data_3LPT # _entry.id 3LPT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3LPT pdb_00003lpt 10.2210/pdb3lpt/pdb RCSB RCSB057578 ? ? WWPDB D_1000057578 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1HYV . unspecified PDB 3LPU . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3LPT _pdbx_database_status.recvd_initial_deposition_date 2010-02-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nicolet, S.' 1 'Christ, F.' 2 'Voet, A.' 3 'Marchand, A.' 4 'Strelkov, S.V.' 5 'de Maeyer, M.' 6 'Chaltin, P.' 7 'Debyzer, Z.' 8 # _citation.id primary _citation.title 'Rational design of small-molecule inhibitors of the LEDGF/p75-integrase interaction and HIV replication.' _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_volume 6 _citation.page_first 442 _citation.page_last 448 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1552-4450 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20473303 _citation.pdbx_database_id_DOI 10.1038/nchembio.370 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Christ, F.' 1 ? primary 'Voet, A.' 2 ? primary 'Marchand, A.' 3 ? primary 'Nicolet, S.' 4 ? primary 'Desimmie, B.A.' 5 ? primary 'Marchand, D.' 6 ? primary 'Bardiot, D.' 7 ? primary 'Van der Veken, N.J.' 8 ? primary 'Van Remoortel, B.' 9 ? primary 'Strelkov, S.V.' 10 ? primary 'De Maeyer, M.' 11 ? primary 'Chaltin, P.' 12 ? primary 'Debyser, Z.' 13 ? # _cell.entry_id 3LPT _cell.length_a 72.000 _cell.length_b 72.000 _cell.length_c 65.490 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LPT _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Integrase 18434.723 1 ? F185K 'HIV integrase core domain' ? 2 non-polymer syn '(6-chloro-2-oxo-4-phenyl-1,2-dihydroquinolin-3-yl)acetic acid' 313.735 1 ? ? ? ? 3 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 4 ? ? ? ? 4 non-polymer syn '2-[3-[3-(2-hydroxyethoxy)propoxy]propoxy]ethanol' 222.279 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 6 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 7 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 8 water nat water 18.015 95 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSHMHGQVDCSPGIWQLD(CAF)THLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFT STTVKAA(CAF)WWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGE RIVDIIATDIQTKE ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTV KAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIAT DIQTKE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 HIS n 1 6 GLY n 1 7 GLN n 1 8 VAL n 1 9 ASP n 1 10 CYS n 1 11 SER n 1 12 PRO n 1 13 GLY n 1 14 ILE n 1 15 TRP n 1 16 GLN n 1 17 LEU n 1 18 ASP n 1 19 CAF n 1 20 THR n 1 21 HIS n 1 22 LEU n 1 23 GLU n 1 24 GLY n 1 25 LYS n 1 26 VAL n 1 27 ILE n 1 28 LEU n 1 29 VAL n 1 30 ALA n 1 31 VAL n 1 32 HIS n 1 33 VAL n 1 34 ALA n 1 35 SER n 1 36 GLY n 1 37 TYR n 1 38 ILE n 1 39 GLU n 1 40 ALA n 1 41 GLU n 1 42 VAL n 1 43 ILE n 1 44 PRO n 1 45 ALA n 1 46 GLU n 1 47 THR n 1 48 GLY n 1 49 GLN n 1 50 GLU n 1 51 THR n 1 52 ALA n 1 53 TYR n 1 54 PHE n 1 55 LEU n 1 56 LEU n 1 57 LYS n 1 58 LEU n 1 59 ALA n 1 60 GLY n 1 61 ARG n 1 62 TRP n 1 63 PRO n 1 64 VAL n 1 65 LYS n 1 66 THR n 1 67 VAL n 1 68 HIS n 1 69 THR n 1 70 ASP n 1 71 ASN n 1 72 GLY n 1 73 SER n 1 74 ASN n 1 75 PHE n 1 76 THR n 1 77 SER n 1 78 THR n 1 79 THR n 1 80 VAL n 1 81 LYS n 1 82 ALA n 1 83 ALA n 1 84 CAF n 1 85 TRP n 1 86 TRP n 1 87 ALA n 1 88 GLY n 1 89 ILE n 1 90 LYS n 1 91 GLN n 1 92 GLU n 1 93 PHE n 1 94 GLY n 1 95 ILE n 1 96 PRO n 1 97 TYR n 1 98 ASN n 1 99 PRO n 1 100 GLN n 1 101 SER n 1 102 GLN n 1 103 GLY n 1 104 VAL n 1 105 ILE n 1 106 GLU n 1 107 SER n 1 108 MET n 1 109 ASN n 1 110 LYS n 1 111 GLU n 1 112 LEU n 1 113 LYS n 1 114 LYS n 1 115 ILE n 1 116 ILE n 1 117 GLY n 1 118 GLN n 1 119 VAL n 1 120 ARG n 1 121 ASP n 1 122 GLN n 1 123 ALA n 1 124 GLU n 1 125 HIS n 1 126 LEU n 1 127 LYS n 1 128 THR n 1 129 ALA n 1 130 VAL n 1 131 GLN n 1 132 MET n 1 133 ALA n 1 134 VAL n 1 135 PHE n 1 136 ILE n 1 137 HIS n 1 138 ASN n 1 139 LYS n 1 140 LYS n 1 141 ARG n 1 142 LYS n 1 143 GLY n 1 144 GLY n 1 145 ILE n 1 146 GLY n 1 147 GLY n 1 148 TYR n 1 149 SER n 1 150 ALA n 1 151 GLY n 1 152 GLU n 1 153 ARG n 1 154 ILE n 1 155 VAL n 1 156 ASP n 1 157 ILE n 1 158 ILE n 1 159 ALA n 1 160 THR n 1 161 ASP n 1 162 ILE n 1 163 GLN n 1 164 THR n 1 165 LYS n 1 166 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q76353_9HIV1 _struct_ref.pdbx_db_accession Q76353 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAA CWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQ TKE ; _struct_ref.pdbx_align_begin 50 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3LPT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 166 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q76353 _struct_ref_seq.db_align_beg 50 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 212 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 50 _struct_ref_seq.pdbx_auth_seq_align_end 212 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3LPT GLY A 1 ? UNP Q76353 ? ? 'expression tag' 47 1 1 3LPT SER A 2 ? UNP Q76353 ? ? 'expression tag' 48 2 1 3LPT HIS A 3 ? UNP Q76353 ? ? 'expression tag' 49 3 1 3LPT LYS A 139 ? UNP Q76353 PHE 185 'engineered mutation' 185 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 723 non-polymer . '(6-chloro-2-oxo-4-phenyl-1,2-dihydroquinolin-3-yl)acetic acid' ? 'C17 H12 Cl N O3' 313.735 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CAF 'L-peptide linking' n S-DIMETHYLARSINOYL-CYSTEINE 'CYSTEIN-S-YL CACODYLATE' 'C5 H12 As N O3 S' 241.140 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 P03 non-polymer . '2-[3-[3-(2-hydroxyethoxy)propoxy]propoxy]ethanol' ? 'C10 H22 O5' 222.279 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3LPT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.66 _exptl_crystal.density_percent_sol 53.79 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '10% (w/v) PEG 8000, 0.1M Na cacodylate pH 6.5, 0.1M (NH4)2SO4, 5mM DTT, VAPOR DIFFUSION, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2008-08-08 _diffrn_detector.details 'Dynamically bendable mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ;LN2 cooled fixed-exit Si(111) monochromator ; _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9999 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9999 # _reflns.entry_id 3LPT _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 35.99 _reflns.d_resolution_high 2.0 _reflns.number_obs 13564 _reflns.number_all ? _reflns.percent_possible_obs 99.46 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.089 _reflns.pdbx_netI_over_sigmaI 5.8 _reflns.B_iso_Wilson_estimate 33.3 _reflns.pdbx_redundancy 4.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.11 _reflns_shell.percent_possible_all 7.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.277 _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.pdbx_redundancy 4.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3LPT _refine.ls_number_reflns_obs 12843 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 2 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 31.55 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.28 _refine.ls_R_factor_obs 0.23321 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23120 _refine.ls_R_factor_R_free 0.27235 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 686 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.918 _refine.correlation_coeff_Fo_to_Fc_free 0.888 _refine.B_iso_mean 33.393 _refine.aniso_B[1][1] 0.10 _refine.aniso_B[2][2] 0.10 _refine.aniso_B[3][3] -0.15 _refine.aniso_B[1][2] 0.05 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.198 _refine.pdbx_overall_ESU_R_Free 0.178 _refine.overall_SU_ML 0.117 _refine.overall_SU_B 3.985 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1131 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 82 _refine_hist.number_atoms_solvent 95 _refine_hist.number_atoms_total 1308 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 31.55 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.022 ? 1245 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.147 1.995 ? 1671 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.833 5.000 ? 145 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.081 24.600 ? 50 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.671 15.000 ? 204 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.070 15.000 ? 5 'X-RAY DIFFRACTION' ? r_chiral_restr 0.081 0.200 ? 179 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.021 ? 884 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.881 1.500 ? 721 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.651 2.000 ? 1164 'X-RAY DIFFRACTION' ? r_scbond_it 1.981 3.000 ? 524 'X-RAY DIFFRACTION' ? r_scangle_it 3.257 4.500 ? 506 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.number_reflns_R_work 941 _refine_ls_shell.R_factor_R_work 0.262 _refine_ls_shell.percent_reflns_obs 99.50 _refine_ls_shell.R_factor_R_free 0.300 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 47 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3LPT _struct.title 'HIV integrase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LPT _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'HIV, integrase, LEDGF/p75, small molecule, inhibitor, Endonuclease, Hydrolase, Nuclease, Transferase, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 6 ? L N N 7 ? M N N 8 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 47 ? TRP A 62 ? THR A 93 TRP A 108 1 ? 16 HELX_P HELX_P2 2 ASN A 71 ? THR A 76 ? ASN A 117 THR A 122 5 ? 6 HELX_P HELX_P3 3 SER A 77 ? GLY A 88 ? SER A 123 GLY A 134 1 ? 12 HELX_P HELX_P4 4 SER A 107 ? ARG A 120 ? SER A 153 ARG A 166 1 ? 14 HELX_P HELX_P5 5 ASP A 121 ? ALA A 123 ? ASP A 167 ALA A 169 5 ? 3 HELX_P HELX_P6 6 HIS A 125 ? LYS A 140 ? HIS A 171 LYS A 186 1 ? 16 HELX_P HELX_P7 7 SER A 149 ? GLN A 163 ? SER A 195 GLN A 209 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 18 C ? ? ? 1_555 A CAF 19 N ? ? A ASP 64 A CAF 65 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? A CAF 19 C ? ? ? 1_555 A THR 20 N ? ? A CAF 65 A THR 66 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A ALA 83 C ? ? ? 1_555 A CAF 84 N ? ? A ALA 129 A CAF 130 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale4 covale both ? A CAF 84 C ? ? ? 1_555 A TRP 85 N ? ? A CAF 130 A TRP 131 1_555 ? ? ? ? ? ? ? 1.332 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 38 ? ILE A 43 ? ILE A 84 ILE A 89 A 2 LYS A 25 ? HIS A 32 ? LYS A 71 HIS A 78 A 3 ILE A 14 ? LEU A 22 ? ILE A 60 LEU A 68 A 4 THR A 66 ? HIS A 68 ? THR A 112 HIS A 114 A 5 LYS A 90 ? GLN A 91 ? LYS A 136 GLN A 137 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 39 ? O GLU A 85 N ALA A 30 ? N ALA A 76 A 2 3 O VAL A 29 ? O VAL A 75 N ASP A 18 ? N ASP A 64 A 3 4 N TRP A 15 ? N TRP A 61 O HIS A 68 ? O HIS A 114 A 4 5 N VAL A 67 ? N VAL A 113 O LYS A 90 ? O LYS A 136 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 723 1 ? 14 'BINDING SITE FOR RESIDUE 723 A 1' AC2 Software A PEG 213 ? 6 'BINDING SITE FOR RESIDUE PEG A 213' AC3 Software A PEG 2 ? 5 'BINDING SITE FOR RESIDUE PEG A 2' AC4 Software A PEG 3 ? 5 'BINDING SITE FOR RESIDUE PEG A 3' AC5 Software A P03 4 ? 3 'BINDING SITE FOR RESIDUE P03 A 4' AC6 Software A PEG 5 ? 3 'BINDING SITE FOR RESIDUE PEG A 5' AC7 Software A SO4 470 ? 4 'BINDING SITE FOR RESIDUE SO4 A 470' AC8 Software A SO4 471 ? 8 'BINDING SITE FOR RESIDUE SO4 A 471' AC9 Software A SO4 472 ? 6 'BINDING SITE FOR RESIDUE SO4 A 472' BC1 Software A CA 473 ? 2 'BINDING SITE FOR RESIDUE CA A 473' BC2 Software A CL 474 ? 3 'BINDING SITE FOR RESIDUE CL A 474' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 THR A 78 ? THR A 124 . ? 1_555 ? 2 AC1 14 THR A 79 ? THR A 125 . ? 1_555 ? 3 AC1 14 ALA A 82 ? ALA A 128 . ? 1_555 ? 4 AC1 14 ALA A 83 ? ALA A 129 . ? 1_555 ? 5 AC1 14 GLN A 122 ? GLN A 168 . ? 4_555 ? 6 AC1 14 GLU A 124 ? GLU A 170 . ? 4_555 ? 7 AC1 14 HIS A 125 ? HIS A 171 . ? 4_555 ? 8 AC1 14 THR A 128 ? THR A 174 . ? 4_555 ? 9 AC1 14 MET A 132 ? MET A 178 . ? 4_555 ? 10 AC1 14 HOH M . ? HOH A 447 . ? 1_555 ? 11 AC1 14 HOH M . ? HOH A 452 . ? 4_555 ? 12 AC1 14 HOH M . ? HOH A 456 . ? 1_555 ? 13 AC1 14 HOH M . ? HOH A 461 . ? 4_555 ? 14 AC1 14 CL L . ? CL A 474 . ? 4_555 ? 15 AC2 6 HIS A 68 ? HIS A 114 . ? 2_655 ? 16 AC2 6 THR A 78 ? THR A 124 . ? 1_555 ? 17 AC2 6 LYS A 81 ? LYS A 127 . ? 1_555 ? 18 AC2 6 TRP A 85 ? TRP A 131 . ? 1_555 ? 19 AC2 6 ILE A 95 ? ILE A 141 . ? 2_655 ? 20 AC2 6 TYR A 97 ? TYR A 143 . ? 2_655 ? 21 AC3 5 VAL A 33 ? VAL A 79 . ? 1_555 ? 22 AC3 5 SER A 35 ? SER A 81 . ? 1_555 ? 23 AC3 5 GLY A 36 ? GLY A 82 . ? 1_555 ? 24 AC3 5 GLU A 106 ? GLU A 152 . ? 1_555 ? 25 AC3 5 ARG A 153 ? ARG A 199 . ? 1_555 ? 26 AC4 5 GLN A 49 ? GLN A 95 . ? 1_555 ? 27 AC4 5 GLU A 50 ? GLU A 96 . ? 1_555 ? 28 AC4 5 TYR A 53 ? TYR A 99 . ? 1_555 ? 29 AC4 5 LYS A 127 ? LYS A 173 . ? 4_555 ? 30 AC4 5 HOH M . ? HOH A 425 . ? 1_555 ? 31 AC5 3 ASP A 121 ? ASP A 167 . ? 1_555 ? 32 AC5 3 HOH M . ? HOH A 462 . ? 1_555 ? 33 AC5 3 CL L . ? CL A 474 . ? 1_555 ? 34 AC6 3 ILE A 157 ? ILE A 203 . ? 1_555 ? 35 AC6 3 ASP A 161 ? ASP A 207 . ? 1_555 ? 36 AC6 3 HOH M . ? HOH A 415 . ? 1_555 ? 37 AC7 4 THR A 20 ? THR A 66 . ? 1_555 ? 38 AC7 4 HIS A 21 ? HIS A 67 . ? 1_555 ? 39 AC7 4 LYS A 113 ? LYS A 159 . ? 1_555 ? 40 AC7 4 HOH M . ? HOH A 459 . ? 1_555 ? 41 AC8 8 GLY A 48 ? GLY A 94 . ? 1_555 ? 42 AC8 8 SER A 77 ? SER A 123 . ? 1_555 ? 43 AC8 8 THR A 78 ? THR A 124 . ? 1_555 ? 44 AC8 8 THR A 79 ? THR A 125 . ? 1_555 ? 45 AC8 8 LYS A 140 ? LYS A 186 . ? 5_664 ? 46 AC8 8 HOH M . ? HOH A 326 . ? 1_555 ? 47 AC8 8 HOH M . ? HOH A 402 . ? 1_555 ? 48 AC8 8 HOH M . ? HOH A 429 . ? 1_555 ? 49 AC9 6 LYS A 25 ? LYS A 71 . ? 1_555 ? 50 AC9 6 ARG A 120 ? ARG A 166 . ? 1_555 ? 51 AC9 6 GLU A 124 ? GLU A 170 . ? 1_555 ? 52 AC9 6 HIS A 125 ? HIS A 171 . ? 1_555 ? 53 AC9 6 LEU A 126 ? LEU A 172 . ? 1_555 ? 54 AC9 6 HOH M . ? HOH A 322 . ? 1_555 ? 55 BC1 2 THR A 78 ? THR A 124 . ? 1_555 ? 56 BC1 2 LYS A 114 ? LYS A 160 . ? 5_664 ? 57 BC2 3 723 B . ? 723 A 1 . ? 4_555 ? 58 BC2 3 P03 F . ? P03 A 4 . ? 1_555 ? 59 BC2 3 HOH M . ? HOH A 452 . ? 1_555 ? # _database_PDB_matrix.entry_id 3LPT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3LPT _atom_sites.fract_transf_matrix[1][1] 0.013889 _atom_sites.fract_transf_matrix[1][2] 0.008019 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016038 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015270 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol AS C CA CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 47 ? ? ? A . n A 1 2 SER 2 48 ? ? ? A . n A 1 3 HIS 3 49 ? ? ? A . n A 1 4 MET 4 50 ? ? ? A . n A 1 5 HIS 5 51 ? ? ? A . n A 1 6 GLY 6 52 ? ? ? A . n A 1 7 GLN 7 53 ? ? ? A . n A 1 8 VAL 8 54 ? ? ? A . n A 1 9 ASP 9 55 55 ASP ASP A . n A 1 10 CYS 10 56 56 CYS CYS A . n A 1 11 SER 11 57 57 SER SER A . n A 1 12 PRO 12 58 58 PRO PRO A . n A 1 13 GLY 13 59 59 GLY GLY A . n A 1 14 ILE 14 60 60 ILE ILE A . n A 1 15 TRP 15 61 61 TRP TRP A . n A 1 16 GLN 16 62 62 GLN GLN A . n A 1 17 LEU 17 63 63 LEU LEU A . n A 1 18 ASP 18 64 64 ASP ASP A . n A 1 19 CAF 19 65 65 CAF CAF A . n A 1 20 THR 20 66 66 THR THR A . n A 1 21 HIS 21 67 67 HIS HIS A . n A 1 22 LEU 22 68 68 LEU LEU A . n A 1 23 GLU 23 69 69 GLU GLU A . n A 1 24 GLY 24 70 70 GLY GLY A . n A 1 25 LYS 25 71 71 LYS LYS A . n A 1 26 VAL 26 72 72 VAL VAL A . n A 1 27 ILE 27 73 73 ILE ILE A . n A 1 28 LEU 28 74 74 LEU LEU A . n A 1 29 VAL 29 75 75 VAL VAL A . n A 1 30 ALA 30 76 76 ALA ALA A . n A 1 31 VAL 31 77 77 VAL VAL A . n A 1 32 HIS 32 78 78 HIS HIS A . n A 1 33 VAL 33 79 79 VAL VAL A . n A 1 34 ALA 34 80 80 ALA ALA A . n A 1 35 SER 35 81 81 SER SER A . n A 1 36 GLY 36 82 82 GLY GLY A . n A 1 37 TYR 37 83 83 TYR TYR A . n A 1 38 ILE 38 84 84 ILE ILE A . n A 1 39 GLU 39 85 85 GLU GLU A . n A 1 40 ALA 40 86 86 ALA ALA A . n A 1 41 GLU 41 87 87 GLU GLU A . n A 1 42 VAL 42 88 88 VAL VAL A . n A 1 43 ILE 43 89 89 ILE ILE A . n A 1 44 PRO 44 90 90 PRO PRO A . n A 1 45 ALA 45 91 91 ALA ALA A . n A 1 46 GLU 46 92 92 GLU GLU A . n A 1 47 THR 47 93 93 THR THR A . n A 1 48 GLY 48 94 94 GLY GLY A . n A 1 49 GLN 49 95 95 GLN GLN A . n A 1 50 GLU 50 96 96 GLU GLU A . n A 1 51 THR 51 97 97 THR THR A . n A 1 52 ALA 52 98 98 ALA ALA A . n A 1 53 TYR 53 99 99 TYR TYR A . n A 1 54 PHE 54 100 100 PHE PHE A . n A 1 55 LEU 55 101 101 LEU LEU A . n A 1 56 LEU 56 102 102 LEU LEU A . n A 1 57 LYS 57 103 103 LYS LYS A . n A 1 58 LEU 58 104 104 LEU LEU A . n A 1 59 ALA 59 105 105 ALA ALA A . n A 1 60 GLY 60 106 106 GLY GLY A . n A 1 61 ARG 61 107 107 ARG ARG A . n A 1 62 TRP 62 108 108 TRP TRP A . n A 1 63 PRO 63 109 109 PRO PRO A . n A 1 64 VAL 64 110 110 VAL VAL A . n A 1 65 LYS 65 111 111 LYS LYS A . n A 1 66 THR 66 112 112 THR THR A . n A 1 67 VAL 67 113 113 VAL VAL A . n A 1 68 HIS 68 114 114 HIS HIS A . n A 1 69 THR 69 115 115 THR THR A . n A 1 70 ASP 70 116 116 ASP ASP A . n A 1 71 ASN 71 117 117 ASN ASN A . n A 1 72 GLY 72 118 118 GLY GLY A . n A 1 73 SER 73 119 119 SER SER A . n A 1 74 ASN 74 120 120 ASN ASN A . n A 1 75 PHE 75 121 121 PHE PHE A . n A 1 76 THR 76 122 122 THR THR A . n A 1 77 SER 77 123 123 SER SER A . n A 1 78 THR 78 124 124 THR THR A . n A 1 79 THR 79 125 125 THR THR A . n A 1 80 VAL 80 126 126 VAL VAL A . n A 1 81 LYS 81 127 127 LYS LYS A . n A 1 82 ALA 82 128 128 ALA ALA A . n A 1 83 ALA 83 129 129 ALA ALA A . n A 1 84 CAF 84 130 130 CAF CAF A . n A 1 85 TRP 85 131 131 TRP TRP A . n A 1 86 TRP 86 132 132 TRP TRP A . n A 1 87 ALA 87 133 133 ALA ALA A . n A 1 88 GLY 88 134 134 GLY GLY A . n A 1 89 ILE 89 135 135 ILE ILE A . n A 1 90 LYS 90 136 136 LYS LYS A . n A 1 91 GLN 91 137 137 GLN GLN A . n A 1 92 GLU 92 138 138 GLU GLU A . n A 1 93 PHE 93 139 139 PHE PHE A . n A 1 94 GLY 94 140 140 GLY GLY A . n A 1 95 ILE 95 141 141 ILE ILE A . n A 1 96 PRO 96 142 142 PRO PRO A . n A 1 97 TYR 97 143 143 TYR TYR A . n A 1 98 ASN 98 144 144 ASN ASN A . n A 1 99 PRO 99 145 ? ? ? A . n A 1 100 GLN 100 146 ? ? ? A . n A 1 101 SER 101 147 ? ? ? A . n A 1 102 GLN 102 148 ? ? ? A . n A 1 103 GLY 103 149 ? ? ? A . n A 1 104 VAL 104 150 ? ? ? A . n A 1 105 ILE 105 151 ? ? ? A . n A 1 106 GLU 106 152 152 GLU GLU A . n A 1 107 SER 107 153 153 SER SER A . n A 1 108 MET 108 154 154 MET MET A . n A 1 109 ASN 109 155 155 ASN ASN A . n A 1 110 LYS 110 156 156 LYS LYS A . n A 1 111 GLU 111 157 157 GLU GLU A . n A 1 112 LEU 112 158 158 LEU LEU A . n A 1 113 LYS 113 159 159 LYS LYS A . n A 1 114 LYS 114 160 160 LYS LYS A . n A 1 115 ILE 115 161 161 ILE ILE A . n A 1 116 ILE 116 162 162 ILE ILE A . n A 1 117 GLY 117 163 163 GLY GLY A . n A 1 118 GLN 118 164 164 GLN GLN A . n A 1 119 VAL 119 165 165 VAL VAL A . n A 1 120 ARG 120 166 166 ARG ARG A . n A 1 121 ASP 121 167 167 ASP ASP A . n A 1 122 GLN 122 168 168 GLN GLN A . n A 1 123 ALA 123 169 169 ALA ALA A . n A 1 124 GLU 124 170 170 GLU GLU A . n A 1 125 HIS 125 171 171 HIS HIS A . n A 1 126 LEU 126 172 172 LEU LEU A . n A 1 127 LYS 127 173 173 LYS LYS A . n A 1 128 THR 128 174 174 THR THR A . n A 1 129 ALA 129 175 175 ALA ALA A . n A 1 130 VAL 130 176 176 VAL VAL A . n A 1 131 GLN 131 177 177 GLN GLN A . n A 1 132 MET 132 178 178 MET MET A . n A 1 133 ALA 133 179 179 ALA ALA A . n A 1 134 VAL 134 180 180 VAL VAL A . n A 1 135 PHE 135 181 181 PHE PHE A . n A 1 136 ILE 136 182 182 ILE ILE A . n A 1 137 HIS 137 183 183 HIS HIS A . n A 1 138 ASN 138 184 184 ASN ASN A . n A 1 139 LYS 139 185 185 LYS LYS A . n A 1 140 LYS 140 186 186 LYS LYS A . n A 1 141 ARG 141 187 187 ARG ARG A . n A 1 142 LYS 142 188 188 LYS LYS A . n A 1 143 GLY 143 189 ? ? ? A . n A 1 144 GLY 144 190 ? ? ? A . n A 1 145 ILE 145 191 ? ? ? A . n A 1 146 GLY 146 192 ? ? ? A . n A 1 147 GLY 147 193 193 GLY GLY A . n A 1 148 TYR 148 194 194 TYR TYR A . n A 1 149 SER 149 195 195 SER SER A . n A 1 150 ALA 150 196 196 ALA ALA A . n A 1 151 GLY 151 197 197 GLY GLY A . n A 1 152 GLU 152 198 198 GLU GLU A . n A 1 153 ARG 153 199 199 ARG ARG A . n A 1 154 ILE 154 200 200 ILE ILE A . n A 1 155 VAL 155 201 201 VAL VAL A . n A 1 156 ASP 156 202 202 ASP ASP A . n A 1 157 ILE 157 203 203 ILE ILE A . n A 1 158 ILE 158 204 204 ILE ILE A . n A 1 159 ALA 159 205 205 ALA ALA A . n A 1 160 THR 160 206 206 THR THR A . n A 1 161 ASP 161 207 207 ASP ASP A . n A 1 162 ILE 162 208 208 ILE ILE A . n A 1 163 GLN 163 209 209 GLN GLN A . n A 1 164 THR 164 210 ? ? ? A . n A 1 165 LYS 165 211 ? ? ? A . n A 1 166 GLU 166 212 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 723 1 1 1 723 723 A . C 3 PEG 1 213 1 PEG PEG A . D 3 PEG 1 2 2 PEG PEG A . E 3 PEG 1 3 3 PEG PEG A . F 4 P03 1 4 4 P03 P03 A . G 3 PEG 1 5 5 PEG PEG A . H 5 SO4 1 470 470 SO4 SO4 A . I 5 SO4 1 471 471 SO4 SO4 A . J 5 SO4 1 472 472 SO4 SO4 A . K 6 CA 1 473 473 CA CA A . L 7 CL 1 474 474 CL CL A . M 8 HOH 1 304 304 HOH HOH A . M 8 HOH 2 305 305 HOH HOH A . M 8 HOH 3 306 306 HOH HOH A . M 8 HOH 4 307 307 HOH HOH A . M 8 HOH 5 308 308 HOH HOH A . M 8 HOH 6 309 309 HOH HOH A . M 8 HOH 7 310 310 HOH HOH A . M 8 HOH 8 312 312 HOH HOH A . M 8 HOH 9 313 313 HOH HOH A . M 8 HOH 10 314 314 HOH HOH A . M 8 HOH 11 315 315 HOH HOH A . M 8 HOH 12 316 316 HOH HOH A . M 8 HOH 13 317 317 HOH HOH A . M 8 HOH 14 320 320 HOH HOH A . M 8 HOH 15 321 321 HOH HOH A . M 8 HOH 16 322 322 HOH HOH A . M 8 HOH 17 324 324 HOH HOH A . M 8 HOH 18 326 326 HOH HOH A . M 8 HOH 19 327 327 HOH HOH A . M 8 HOH 20 330 330 HOH HOH A . M 8 HOH 21 333 333 HOH HOH A . M 8 HOH 22 336 336 HOH HOH A . M 8 HOH 23 339 339 HOH HOH A . M 8 HOH 24 341 341 HOH HOH A . M 8 HOH 25 344 344 HOH HOH A . M 8 HOH 26 347 347 HOH HOH A . M 8 HOH 27 349 349 HOH HOH A . M 8 HOH 28 351 351 HOH HOH A . M 8 HOH 29 354 354 HOH HOH A . M 8 HOH 30 358 358 HOH HOH A . M 8 HOH 31 360 360 HOH HOH A . M 8 HOH 32 361 361 HOH HOH A . M 8 HOH 33 363 363 HOH HOH A . M 8 HOH 34 371 371 HOH HOH A . M 8 HOH 35 373 373 HOH HOH A . M 8 HOH 36 377 377 HOH HOH A . M 8 HOH 37 378 378 HOH HOH A . M 8 HOH 38 379 379 HOH HOH A . M 8 HOH 39 381 381 HOH HOH A . M 8 HOH 40 384 384 HOH HOH A . M 8 HOH 41 386 386 HOH HOH A . M 8 HOH 42 388 388 HOH HOH A . M 8 HOH 43 390 390 HOH HOH A . M 8 HOH 44 391 391 HOH HOH A . M 8 HOH 45 392 392 HOH HOH A . M 8 HOH 46 394 394 HOH HOH A . M 8 HOH 47 395 395 HOH HOH A . M 8 HOH 48 397 397 HOH HOH A . M 8 HOH 49 398 398 HOH HOH A . M 8 HOH 50 401 401 HOH HOH A . M 8 HOH 51 402 402 HOH HOH A . M 8 HOH 52 403 403 HOH HOH A . M 8 HOH 53 404 404 HOH HOH A . M 8 HOH 54 405 405 HOH HOH A . M 8 HOH 55 406 406 HOH HOH A . M 8 HOH 56 414 414 HOH HOH A . M 8 HOH 57 415 415 HOH HOH A . M 8 HOH 58 418 418 HOH HOH A . M 8 HOH 59 425 425 HOH HOH A . M 8 HOH 60 426 426 HOH HOH A . M 8 HOH 61 428 428 HOH HOH A . M 8 HOH 62 429 429 HOH HOH A . M 8 HOH 63 431 431 HOH HOH A . M 8 HOH 64 432 432 HOH HOH A . M 8 HOH 65 434 434 HOH HOH A . M 8 HOH 66 438 438 HOH HOH A . M 8 HOH 67 441 441 HOH HOH A . M 8 HOH 68 442 442 HOH HOH A . M 8 HOH 69 443 443 HOH HOH A . M 8 HOH 70 444 444 HOH HOH A . M 8 HOH 71 445 445 HOH HOH A . M 8 HOH 72 446 446 HOH HOH A . M 8 HOH 73 447 447 HOH HOH A . M 8 HOH 74 448 448 HOH HOH A . M 8 HOH 75 449 449 HOH HOH A . M 8 HOH 76 450 450 HOH HOH A . M 8 HOH 77 451 451 HOH HOH A . M 8 HOH 78 452 452 HOH HOH A . M 8 HOH 79 453 453 HOH HOH A . M 8 HOH 80 454 454 HOH HOH A . M 8 HOH 81 455 455 HOH HOH A . M 8 HOH 82 456 456 HOH HOH A . M 8 HOH 83 457 457 HOH HOH A . M 8 HOH 84 458 458 HOH HOH A . M 8 HOH 85 459 459 HOH HOH A . M 8 HOH 86 460 460 HOH HOH A . M 8 HOH 87 461 461 HOH HOH A . M 8 HOH 88 462 462 HOH HOH A . M 8 HOH 89 463 463 HOH HOH A . M 8 HOH 90 464 464 HOH HOH A . M 8 HOH 91 465 465 HOH HOH A . M 8 HOH 92 466 466 HOH HOH A . M 8 HOH 93 467 467 HOH HOH A . M 8 HOH 94 468 468 HOH HOH A . M 8 HOH 95 469 469 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CAF 19 A CAF 65 ? CYS S-DIMETHYLARSINOYL-CYSTEINE 2 A CAF 84 A CAF 130 ? CYS S-DIMETHYLARSINOYL-CYSTEINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2990 ? 1 MORE -20 ? 1 'SSA (A^2)' 13770 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-05-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2015-12-09 4 'Structure model' 1 3 2017-11-01 5 'Structure model' 1 4 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_ref_seq_dif.details' 5 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 REFMAC refinement 5.5.0109 ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 56 ? ? -149.60 -4.97 2 1 SER A 153 ? ? 34.29 61.01 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A CAF 65 ? CE2 ? A CAF 19 CE2 2 1 Y 1 A CAF 130 ? CE2 ? A CAF 84 CE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 47 ? A GLY 1 2 1 Y 1 A SER 48 ? A SER 2 3 1 Y 1 A HIS 49 ? A HIS 3 4 1 Y 1 A MET 50 ? A MET 4 5 1 Y 1 A HIS 51 ? A HIS 5 6 1 Y 1 A GLY 52 ? A GLY 6 7 1 Y 1 A GLN 53 ? A GLN 7 8 1 Y 1 A VAL 54 ? A VAL 8 9 1 Y 1 A PRO 145 ? A PRO 99 10 1 Y 1 A GLN 146 ? A GLN 100 11 1 Y 1 A SER 147 ? A SER 101 12 1 Y 1 A GLN 148 ? A GLN 102 13 1 Y 1 A GLY 149 ? A GLY 103 14 1 Y 1 A VAL 150 ? A VAL 104 15 1 Y 1 A ILE 151 ? A ILE 105 16 1 Y 1 A GLY 189 ? A GLY 143 17 1 Y 1 A GLY 190 ? A GLY 144 18 1 Y 1 A ILE 191 ? A ILE 145 19 1 Y 1 A GLY 192 ? A GLY 146 20 1 Y 1 A THR 210 ? A THR 164 21 1 Y 1 A LYS 211 ? A LYS 165 22 1 Y 1 A GLU 212 ? A GLU 166 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(6-chloro-2-oxo-4-phenyl-1,2-dihydroquinolin-3-yl)acetic acid' 723 3 'DI(HYDROXYETHYL)ETHER' PEG 4 '2-[3-[3-(2-hydroxyethoxy)propoxy]propoxy]ethanol' P03 5 'SULFATE ION' SO4 6 'CALCIUM ION' CA 7 'CHLORIDE ION' CL 8 water HOH #