data_3LQZ # _entry.id 3LQZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3LQZ RCSB RCSB057620 WWPDB D_1000057620 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3LQZ _pdbx_database_status.recvd_initial_deposition_date 2010-02-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Dai, S.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of HLA-DP2 and implications for chronic beryllium disease.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 107 _citation.page_first 7425 _citation.page_last 7430 _citation.year 2010 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20356827 _citation.pdbx_database_id_DOI 10.1073/pnas.1001772107 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dai, S.' 1 ? primary 'Murphy, G.A.' 2 ? primary 'Crawford, F.' 3 ? primary 'Mack, D.G.' 4 ? primary 'Falta, M.T.' 5 ? primary 'Marrack, P.' 6 ? primary 'Kappler, J.W.' 7 ? primary 'Fontenot, A.P.' 8 ? # _cell.entry_id 3LQZ _cell.length_a 157.2823 _cell.length_b 157.2823 _cell.length_c 61.8048 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LQZ _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HLA class II histocompatibility antigen, DP alpha 1 chain' 20943.336 1 ? ? ? ? 2 polymer man 'HLA-DP2 beta chain linked with DRa peptide' 24463.326 1 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 3 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'HLA-SB alpha chain, MHC class II DP3-alpha, DP(W3), DP(W4)' 2 'Major histocompatibility complex, class II, DP beta 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;IKADHVSTYAAFVQTHRPTGEFMFEFDEDEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHT QATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTFVPSAEDF YDCRVEHWGLDQPLLKHWEAQ ; ;IKADHVSTYAAFVQTHRPTGEFMFEFDEDEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHT QATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTFVPSAEDF YDCRVEHWGLDQPLLKHWEAQ ; A ? 2 'polypeptide(L)' no no ;RKFHYLPFLPSTGGSLVPRGSGGGGSPENYLFQGRQECYAFNGTQRFLERYIYNREEFVRFDSDVGEFRAVTELGRPDEE YWNSQKDILEEERAVPDRMCRHNYELGGPMTLQRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEET AGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQ ; ;RKFHYLPFLPSTGGSLVPRGSGGGGSPENYLFQGRQECYAFNGTQRFLERYIYNREEFVRFDSDVGEFRAVTELGRPDEE YWNSQKDILEEERAVPDRMCRHNYELGGPMTLQRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEET AGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQ ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 LYS n 1 3 ALA n 1 4 ASP n 1 5 HIS n 1 6 VAL n 1 7 SER n 1 8 THR n 1 9 TYR n 1 10 ALA n 1 11 ALA n 1 12 PHE n 1 13 VAL n 1 14 GLN n 1 15 THR n 1 16 HIS n 1 17 ARG n 1 18 PRO n 1 19 THR n 1 20 GLY n 1 21 GLU n 1 22 PHE n 1 23 MET n 1 24 PHE n 1 25 GLU n 1 26 PHE n 1 27 ASP n 1 28 GLU n 1 29 ASP n 1 30 GLU n 1 31 MET n 1 32 PHE n 1 33 TYR n 1 34 VAL n 1 35 ASP n 1 36 LEU n 1 37 ASP n 1 38 LYS n 1 39 LYS n 1 40 GLU n 1 41 THR n 1 42 VAL n 1 43 TRP n 1 44 HIS n 1 45 LEU n 1 46 GLU n 1 47 GLU n 1 48 PHE n 1 49 GLY n 1 50 GLN n 1 51 ALA n 1 52 PHE n 1 53 SER n 1 54 PHE n 1 55 GLU n 1 56 ALA n 1 57 GLN n 1 58 GLY n 1 59 GLY n 1 60 LEU n 1 61 ALA n 1 62 ASN n 1 63 ILE n 1 64 ALA n 1 65 ILE n 1 66 LEU n 1 67 ASN n 1 68 ASN n 1 69 ASN n 1 70 LEU n 1 71 ASN n 1 72 THR n 1 73 LEU n 1 74 ILE n 1 75 GLN n 1 76 ARG n 1 77 SER n 1 78 ASN n 1 79 HIS n 1 80 THR n 1 81 GLN n 1 82 ALA n 1 83 THR n 1 84 ASN n 1 85 ASP n 1 86 PRO n 1 87 PRO n 1 88 GLU n 1 89 VAL n 1 90 THR n 1 91 VAL n 1 92 PHE n 1 93 PRO n 1 94 LYS n 1 95 GLU n 1 96 PRO n 1 97 VAL n 1 98 GLU n 1 99 LEU n 1 100 GLY n 1 101 GLN n 1 102 PRO n 1 103 ASN n 1 104 THR n 1 105 LEU n 1 106 ILE n 1 107 CYS n 1 108 HIS n 1 109 ILE n 1 110 ASP n 1 111 LYS n 1 112 PHE n 1 113 PHE n 1 114 PRO n 1 115 PRO n 1 116 VAL n 1 117 LEU n 1 118 ASN n 1 119 VAL n 1 120 THR n 1 121 TRP n 1 122 LEU n 1 123 CYS n 1 124 ASN n 1 125 GLY n 1 126 GLU n 1 127 LEU n 1 128 VAL n 1 129 THR n 1 130 GLU n 1 131 GLY n 1 132 VAL n 1 133 ALA n 1 134 GLU n 1 135 SER n 1 136 LEU n 1 137 PHE n 1 138 LEU n 1 139 PRO n 1 140 ARG n 1 141 THR n 1 142 ASP n 1 143 TYR n 1 144 SER n 1 145 PHE n 1 146 HIS n 1 147 LYS n 1 148 PHE n 1 149 HIS n 1 150 TYR n 1 151 LEU n 1 152 THR n 1 153 PHE n 1 154 VAL n 1 155 PRO n 1 156 SER n 1 157 ALA n 1 158 GLU n 1 159 ASP n 1 160 PHE n 1 161 TYR n 1 162 ASP n 1 163 CYS n 1 164 ARG n 1 165 VAL n 1 166 GLU n 1 167 HIS n 1 168 TRP n 1 169 GLY n 1 170 LEU n 1 171 ASP n 1 172 GLN n 1 173 PRO n 1 174 LEU n 1 175 LEU n 1 176 LYS n 1 177 HIS n 1 178 TRP n 1 179 GLU n 1 180 ALA n 1 181 GLN n 2 1 ARG n 2 2 LYS n 2 3 PHE n 2 4 HIS n 2 5 TYR n 2 6 LEU n 2 7 PRO n 2 8 PHE n 2 9 LEU n 2 10 PRO n 2 11 SER n 2 12 THR n 2 13 GLY n 2 14 GLY n 2 15 SER n 2 16 LEU n 2 17 VAL n 2 18 PRO n 2 19 ARG n 2 20 GLY n 2 21 SER n 2 22 GLY n 2 23 GLY n 2 24 GLY n 2 25 GLY n 2 26 SER n 2 27 PRO n 2 28 GLU n 2 29 ASN n 2 30 TYR n 2 31 LEU n 2 32 PHE n 2 33 GLN n 2 34 GLY n 2 35 ARG n 2 36 GLN n 2 37 GLU n 2 38 CYS n 2 39 TYR n 2 40 ALA n 2 41 PHE n 2 42 ASN n 2 43 GLY n 2 44 THR n 2 45 GLN n 2 46 ARG n 2 47 PHE n 2 48 LEU n 2 49 GLU n 2 50 ARG n 2 51 TYR n 2 52 ILE n 2 53 TYR n 2 54 ASN n 2 55 ARG n 2 56 GLU n 2 57 GLU n 2 58 PHE n 2 59 VAL n 2 60 ARG n 2 61 PHE n 2 62 ASP n 2 63 SER n 2 64 ASP n 2 65 VAL n 2 66 GLY n 2 67 GLU n 2 68 PHE n 2 69 ARG n 2 70 ALA n 2 71 VAL n 2 72 THR n 2 73 GLU n 2 74 LEU n 2 75 GLY n 2 76 ARG n 2 77 PRO n 2 78 ASP n 2 79 GLU n 2 80 GLU n 2 81 TYR n 2 82 TRP n 2 83 ASN n 2 84 SER n 2 85 GLN n 2 86 LYS n 2 87 ASP n 2 88 ILE n 2 89 LEU n 2 90 GLU n 2 91 GLU n 2 92 GLU n 2 93 ARG n 2 94 ALA n 2 95 VAL n 2 96 PRO n 2 97 ASP n 2 98 ARG n 2 99 MET n 2 100 CYS n 2 101 ARG n 2 102 HIS n 2 103 ASN n 2 104 TYR n 2 105 GLU n 2 106 LEU n 2 107 GLY n 2 108 GLY n 2 109 PRO n 2 110 MET n 2 111 THR n 2 112 LEU n 2 113 GLN n 2 114 ARG n 2 115 ARG n 2 116 VAL n 2 117 GLN n 2 118 PRO n 2 119 ARG n 2 120 VAL n 2 121 ASN n 2 122 VAL n 2 123 SER n 2 124 PRO n 2 125 SER n 2 126 LYS n 2 127 LYS n 2 128 GLY n 2 129 PRO n 2 130 LEU n 2 131 GLN n 2 132 HIS n 2 133 HIS n 2 134 ASN n 2 135 LEU n 2 136 LEU n 2 137 VAL n 2 138 CYS n 2 139 HIS n 2 140 VAL n 2 141 THR n 2 142 ASP n 2 143 PHE n 2 144 TYR n 2 145 PRO n 2 146 GLY n 2 147 SER n 2 148 ILE n 2 149 GLN n 2 150 VAL n 2 151 ARG n 2 152 TRP n 2 153 PHE n 2 154 LEU n 2 155 ASN n 2 156 GLY n 2 157 GLN n 2 158 GLU n 2 159 GLU n 2 160 THR n 2 161 ALA n 2 162 GLY n 2 163 VAL n 2 164 VAL n 2 165 SER n 2 166 THR n 2 167 ASN n 2 168 LEU n 2 169 ILE n 2 170 ARG n 2 171 ASN n 2 172 GLY n 2 173 ASP n 2 174 TRP n 2 175 THR n 2 176 PHE n 2 177 GLN n 2 178 ILE n 2 179 LEU n 2 180 VAL n 2 181 MET n 2 182 LEU n 2 183 GLU n 2 184 MET n 2 185 THR n 2 186 PRO n 2 187 GLN n 2 188 GLN n 2 189 GLY n 2 190 ASP n 2 191 VAL n 2 192 TYR n 2 193 THR n 2 194 CYS n 2 195 GLN n 2 196 VAL n 2 197 GLU n 2 198 HIS n 2 199 THR n 2 200 SER n 2 201 LEU n 2 202 ASP n 2 203 SER n 2 204 PRO n 2 205 VAL n 2 206 THR n 2 207 VAL n 2 208 GLU n 2 209 TRP n 2 210 LYS n 2 211 ALA n 2 212 GLN n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? 'HLA-DP1A, HLA-DPA1, HLA-DPA1*0103, HLASB' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'unidentified baculovirus' 10469 ? ? ? ? ? ? BTI-Tn-5B1-4 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? human ? 'DAMA-245O6.7-001, HLA-DPB1, HLA-DPB1*0201' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'unidentified baculovirus' 10469 ? ? ? ? ? ? BTI-Tn-5B1-4 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DPA1_HUMAN P20036 1 ;IKADHVSTYAAFVQTHRPTGEFMFEFDEDEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHT QATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTFVPSAEDF YDCRVEHWGLDQPLLKHWEAQ ; 32 ? 2 UNP Q5EP54_HUMAN Q5EP54 2 ;PENYLFQGRQECYAFNGTQRFLERYIYNREEFVRFDSDVGEFRAVTELGRPDEEYWNSQKDILEEERAVPDRMCRHNYEL GGPMTLQRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRNGDWTFQILVMLEMTP QQGDVYTCQVEHTSLDSPVTVEWKAQ ; 33 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3LQZ A 1 ? 181 ? P20036 32 ? 212 ? 1 181 2 2 3LQZ B 27 ? 212 ? Q5EP54 33 ? 218 ? 4 189 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 3LQZ ARG B 1 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -22 1 2 3LQZ LYS B 2 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -21 2 2 3LQZ PHE B 3 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -20 3 2 3LQZ HIS B 4 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -19 4 2 3LQZ TYR B 5 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -18 5 2 3LQZ LEU B 6 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -17 6 2 3LQZ PRO B 7 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -16 7 2 3LQZ PHE B 8 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -15 8 2 3LQZ LEU B 9 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -14 9 2 3LQZ PRO B 10 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -13 10 2 3LQZ SER B 11 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -12 11 2 3LQZ THR B 12 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -11 12 2 3LQZ GLY B 13 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -10 13 2 3LQZ GLY B 14 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -9 14 2 3LQZ SER B 15 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -8 15 2 3LQZ LEU B 16 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -7 16 2 3LQZ VAL B 17 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -6 17 2 3LQZ PRO B 18 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -5 18 2 3LQZ ARG B 19 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -4 19 2 3LQZ GLY B 20 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -3 20 2 3LQZ SER B 21 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -2 21 2 3LQZ GLY B 22 ? UNP Q5EP54 ? ? 'SEE REMARK 999' -1 22 2 3LQZ GLY B 23 ? UNP Q5EP54 ? ? 'SEE REMARK 999' 0 23 2 3LQZ GLY B 24 ? UNP Q5EP54 ? ? 'SEE REMARK 999' 1 24 2 3LQZ GLY B 25 ? UNP Q5EP54 ? ? 'SEE REMARK 999' 2 25 2 3LQZ SER B 26 ? UNP Q5EP54 ? ? 'SEE REMARK 999' 3 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3LQZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.86 _exptl_crystal.density_percent_sol 74.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '20% PEG4000, 300mM Sodium Chloride, HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 170 ? 1 2 ? ? 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'ALS BEAMLINE 8.2.2' ALS 8.2.2 ? 1.0 2 SYNCHROTRON 'APS BEAMLINE 19-ID' APS 19-ID ? 1.0 # _reflns.entry_id 3LQZ _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 136.08 _reflns.d_resolution_high 3.25 _reflns.number_obs 12053 _reflns.number_all ? _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.25 _reflns_shell.d_res_low 3.283 _reflns_shell.percent_possible_all 89.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 6.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3LQZ _refine.ls_number_reflns_obs 11332 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50 _refine.ls_d_res_high 3.25 _refine.ls_percent_reflns_obs 86.16 _refine.ls_R_factor_obs 0.21865 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21693 _refine.ls_R_factor_R_free 0.25094 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 645 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.930 _refine.correlation_coeff_Fo_to_Fc_free 0.907 _refine.B_iso_mean 93.721 _refine.aniso_B[1][1] 5.94 _refine.aniso_B[2][2] 5.94 _refine.aniso_B[3][3] -8.91 _refine.aniso_B[1][2] 2.97 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.439 _refine.overall_SU_ML 0.355 _refine.overall_SU_B 49.178 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3114 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3156 _refine_hist.d_res_high 3.25 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 3252 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.490 1.947 ? 4426 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.719 5.000 ? 375 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 41.920 24.246 ? 179 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 21.430 15.000 ? 506 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.275 15.000 ? 20 'X-RAY DIFFRACTION' ? r_chiral_restr 0.096 0.200 ? 467 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 2564 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.228 0.200 ? 1383 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.319 0.200 ? 2177 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.182 0.200 ? 89 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.221 0.200 ? 26 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.079 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.364 1.500 ? 1930 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.672 2.000 ? 3076 'X-RAY DIFFRACTION' ? r_scbond_it 0.957 3.000 ? 1488 'X-RAY DIFFRACTION' ? r_scangle_it 1.661 4.500 ? 1350 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.25 _refine_ls_shell.d_res_low 3.283 _refine_ls_shell.number_reflns_R_work 902 _refine_ls_shell.R_factor_R_work 0.338 _refine_ls_shell.percent_reflns_obs 88.89 _refine_ls_shell.R_factor_R_free 0.370 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3LQZ _struct.title 'Crystal Structure of HLA-DP2' _struct.pdbx_descriptor 'HLA class II histocompatibility antigen, DP alpha 1 chain, HLA-DP2 beta chain linked with DRa peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LQZ _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'HLA, MHC, Immune, Disulfide bond, Glycoprotein, Immune response, Membrane, MHC II, Transmembrane, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 45 ? GLN A 50 ? LEU A 45 GLN A 50 1 ? 6 HELX_P HELX_P2 2 GLU A 55 ? ARG A 76 ? GLU A 55 ARG A 76 1 ? 22 HELX_P HELX_P3 3 THR B 72 ? LEU B 74 ? THR B 49 LEU B 51 5 ? 3 HELX_P HELX_P4 4 GLY B 75 ? SER B 84 ? GLY B 52 SER B 61 1 ? 10 HELX_P HELX_P5 5 GLN B 85 ? VAL B 95 ? GLN B 62 VAL B 72 1 ? 11 HELX_P HELX_P6 6 ARG B 98 ? LEU B 112 ? ARG B 75 LEU B 89 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 107 SG ? ? ? 1_555 A CYS 163 SG ? ? A CYS 107 A CYS 163 1_555 ? ? ? ? ? ? ? 2.062 ? ? disulf2 disulf ? ? B CYS 38 SG ? ? ? 1_555 B CYS 100 SG ? ? B CYS 15 B CYS 77 1_555 ? ? ? ? ? ? ? 2.059 ? ? disulf3 disulf ? ? B CYS 138 SG ? ? ? 1_555 B CYS 194 SG ? ? B CYS 115 B CYS 171 1_555 ? ? ? ? ? ? ? 2.052 ? ? covale1 covale one ? A ASN 78 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 78 A NAG 183 1_555 ? ? ? ? ? ? ? 1.459 ? N-Glycosylation covale2 covale one ? A ASN 118 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 118 A NAG 182 1_555 ? ? ? ? ? ? ? 1.458 ? N-Glycosylation covale3 covale one ? B ASN 42 ND2 ? ? ? 1_555 E NAG . C1 ? ? B ASN 19 B NAG 190 1_555 ? ? ? ? ? ? ? 1.454 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 113 A . ? PHE 113 A PRO 114 A ? PRO 114 A 1 -0.90 2 TYR 144 B . ? TYR 121 B PRO 145 B ? PRO 122 B 1 -1.30 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 4 ? C ? 4 ? D ? 4 ? E ? 4 ? F ? 4 ? G ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel G 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 40 ? TRP A 43 ? GLU A 40 TRP A 43 A 2 ASP A 29 ? ASP A 35 ? ASP A 29 ASP A 35 A 3 GLY A 20 ? PHE A 26 ? GLY A 20 PHE A 26 A 4 HIS A 5 ? GLN A 14 ? HIS A 5 GLN A 14 A 5 LEU B 31 ? ALA B 40 ? LEU B 8 ALA B 17 A 6 GLN B 45 ? TYR B 53 ? GLN B 22 TYR B 30 A 7 GLU B 56 ? ASP B 62 ? GLU B 33 ASP B 39 A 8 PHE B 68 ? ALA B 70 ? PHE B 45 ALA B 47 B 1 GLU A 88 ? PRO A 93 ? GLU A 88 PRO A 93 B 2 ASN A 103 ? PHE A 112 ? ASN A 103 PHE A 112 B 3 PHE A 145 ? PHE A 153 ? PHE A 145 PHE A 153 B 4 VAL A 132 ? GLU A 134 ? VAL A 132 GLU A 134 C 1 GLU A 88 ? PRO A 93 ? GLU A 88 PRO A 93 C 2 ASN A 103 ? PHE A 112 ? ASN A 103 PHE A 112 C 3 PHE A 145 ? PHE A 153 ? PHE A 145 PHE A 153 C 4 LEU A 138 ? PRO A 139 ? LEU A 138 PRO A 139 D 1 GLU A 126 ? LEU A 127 ? GLU A 126 LEU A 127 D 2 ASN A 118 ? CYS A 123 ? ASN A 118 CYS A 123 D 3 TYR A 161 ? GLU A 166 ? TYR A 161 GLU A 166 D 4 LEU A 174 ? TRP A 178 ? LEU A 174 TRP A 178 E 1 VAL B 122 ? SER B 123 ? VAL B 99 SER B 100 E 2 LEU B 135 ? PHE B 143 ? LEU B 112 PHE B 120 E 3 PHE B 176 ? GLU B 183 ? PHE B 153 GLU B 160 E 4 VAL B 164 ? SER B 165 ? VAL B 141 SER B 142 F 1 VAL B 122 ? SER B 123 ? VAL B 99 SER B 100 F 2 LEU B 135 ? PHE B 143 ? LEU B 112 PHE B 120 F 3 PHE B 176 ? GLU B 183 ? PHE B 153 GLU B 160 F 4 ILE B 169 ? ARG B 170 ? ILE B 146 ARG B 147 G 1 GLN B 157 ? GLU B 158 ? GLN B 134 GLU B 135 G 2 ILE B 148 ? LEU B 154 ? ILE B 125 LEU B 131 G 3 TYR B 192 ? HIS B 198 ? TYR B 169 HIS B 175 G 4 THR B 206 ? TRP B 209 ? THR B 183 TRP B 186 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 42 ? O VAL A 42 N TYR A 33 ? N TYR A 33 A 2 3 O ASP A 29 ? O ASP A 29 N PHE A 26 ? N PHE A 26 A 3 4 O MET A 23 ? O MET A 23 N ALA A 10 ? N ALA A 10 A 4 5 N SER A 7 ? N SER A 7 O CYS B 38 ? O CYS B 15 A 5 6 N GLN B 33 ? N GLN B 10 O ILE B 52 ? O ILE B 29 A 6 7 N TYR B 53 ? N TYR B 30 O GLU B 56 ? O GLU B 33 A 7 8 N ARG B 60 ? N ARG B 37 O ARG B 69 ? O ARG B 46 B 1 2 N PHE A 92 ? N PHE A 92 O ILE A 106 ? O ILE A 106 B 2 3 N LEU A 105 ? N LEU A 105 O LEU A 151 ? O LEU A 151 B 3 4 O TYR A 150 ? O TYR A 150 N ALA A 133 ? N ALA A 133 C 1 2 N PHE A 92 ? N PHE A 92 O ILE A 106 ? O ILE A 106 C 2 3 N LEU A 105 ? N LEU A 105 O LEU A 151 ? O LEU A 151 C 3 4 O HIS A 146 ? O HIS A 146 N LEU A 138 ? N LEU A 138 D 1 2 O GLU A 126 ? O GLU A 126 N CYS A 123 ? N CYS A 123 D 2 3 N ASN A 118 ? N ASN A 118 O GLU A 166 ? O GLU A 166 D 3 4 N CYS A 163 ? N CYS A 163 O LYS A 176 ? O LYS A 176 E 1 2 N SER B 123 ? N SER B 100 O VAL B 137 ? O VAL B 114 E 2 3 N VAL B 140 ? N VAL B 117 O ILE B 178 ? O ILE B 155 E 3 4 O MET B 181 ? O MET B 158 N VAL B 164 ? N VAL B 141 F 1 2 N SER B 123 ? N SER B 100 O VAL B 137 ? O VAL B 114 F 2 3 N VAL B 140 ? N VAL B 117 O ILE B 178 ? O ILE B 155 F 3 4 O GLN B 177 ? O GLN B 154 N ILE B 169 ? N ILE B 146 G 1 2 O GLN B 157 ? O GLN B 134 N LEU B 154 ? N LEU B 131 G 2 3 N ARG B 151 ? N ARG B 128 O GLN B 195 ? O GLN B 172 G 3 4 N CYS B 194 ? N CYS B 171 O VAL B 207 ? O VAL B 184 # _database_PDB_matrix.entry_id 3LQZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3LQZ _atom_sites.fract_transf_matrix[1][1] 0.006362 _atom_sites.fract_transf_matrix[1][2] 0.003673 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007347 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016172 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.text 'NAG B 190 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 1 1 ILE ILE A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 HIS 5 5 5 HIS HIS A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 HIS 16 16 16 HIS HIS A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 MET 23 23 23 MET MET A . n A 1 24 PHE 24 24 24 PHE PHE A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 PHE 26 26 26 PHE PHE A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 MET 31 31 31 MET MET A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 TRP 43 43 43 TRP TRP A . n A 1 44 HIS 44 44 44 HIS HIS A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 GLN 75 75 75 GLN GLN A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 HIS 79 79 79 HIS HIS A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 GLN 81 81 81 GLN GLN A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 PHE 92 92 92 PHE PHE A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 GLN 101 101 101 GLN GLN A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 CYS 107 107 107 CYS CYS A . n A 1 108 HIS 108 108 108 HIS HIS A . n A 1 109 ILE 109 109 109 ILE ILE A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 PHE 113 113 113 PHE PHE A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 PRO 115 115 115 PRO PRO A . n A 1 116 VAL 116 116 116 VAL VAL A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 ASN 118 118 118 ASN ASN A . n A 1 119 VAL 119 119 119 VAL VAL A . n A 1 120 THR 120 120 120 THR THR A . n A 1 121 TRP 121 121 121 TRP TRP A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 CYS 123 123 123 CYS CYS A . n A 1 124 ASN 124 124 124 ASN ASN A . n A 1 125 GLY 125 125 125 GLY GLY A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 THR 129 129 129 THR THR A . n A 1 130 GLU 130 130 130 GLU GLU A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 ALA 133 133 133 ALA ALA A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 SER 135 135 135 SER SER A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 PHE 137 137 137 PHE PHE A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 PRO 139 139 139 PRO PRO A . n A 1 140 ARG 140 140 140 ARG ARG A . n A 1 141 THR 141 141 141 THR THR A . n A 1 142 ASP 142 142 142 ASP ASP A . n A 1 143 TYR 143 143 143 TYR TYR A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 PHE 145 145 145 PHE PHE A . n A 1 146 HIS 146 146 146 HIS HIS A . n A 1 147 LYS 147 147 147 LYS LYS A . n A 1 148 PHE 148 148 148 PHE PHE A . n A 1 149 HIS 149 149 149 HIS HIS A . n A 1 150 TYR 150 150 150 TYR TYR A . n A 1 151 LEU 151 151 151 LEU LEU A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 PHE 153 153 153 PHE PHE A . n A 1 154 VAL 154 154 154 VAL VAL A . n A 1 155 PRO 155 155 155 PRO PRO A . n A 1 156 SER 156 156 156 SER SER A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 GLU 158 158 158 GLU GLU A . n A 1 159 ASP 159 159 159 ASP ASP A . n A 1 160 PHE 160 160 160 PHE PHE A . n A 1 161 TYR 161 161 161 TYR TYR A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 CYS 163 163 163 CYS CYS A . n A 1 164 ARG 164 164 164 ARG ARG A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 GLU 166 166 166 GLU GLU A . n A 1 167 HIS 167 167 167 HIS HIS A . n A 1 168 TRP 168 168 168 TRP TRP A . n A 1 169 GLY 169 169 169 GLY GLY A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 ASP 171 171 171 ASP ASP A . n A 1 172 GLN 172 172 172 GLN GLN A . n A 1 173 PRO 173 173 173 PRO PRO A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 LEU 175 175 175 LEU LEU A . n A 1 176 LYS 176 176 176 LYS LYS A . n A 1 177 HIS 177 177 177 HIS HIS A . n A 1 178 TRP 178 178 178 TRP TRP A . n A 1 179 GLU 179 179 179 GLU GLU A . n A 1 180 ALA 180 180 180 ALA ALA A . n A 1 181 GLN 181 181 181 GLN GLN A . n B 2 1 ARG 1 -22 -22 ARG ARG B . n B 2 2 LYS 2 -21 -21 LYS LYS B . n B 2 3 PHE 3 -20 -20 PHE PHE B . n B 2 4 HIS 4 -19 -19 HIS HIS B . n B 2 5 TYR 5 -18 -18 TYR TYR B . n B 2 6 LEU 6 -17 -17 LEU LEU B . n B 2 7 PRO 7 -16 -16 PRO PRO B . n B 2 8 PHE 8 -15 -15 PHE PHE B . n B 2 9 LEU 9 -14 -14 LEU LEU B . n B 2 10 PRO 10 -13 -13 PRO PRO B . n B 2 11 SER 11 -12 -12 SER SER B . n B 2 12 THR 12 -11 -11 THR THR B . n B 2 13 GLY 13 -10 -10 GLY GLY B . n B 2 14 GLY 14 -9 -9 GLY GLY B . n B 2 15 SER 15 -8 -8 SER SER B . n B 2 16 LEU 16 -7 ? ? ? B . n B 2 17 VAL 17 -6 ? ? ? B . n B 2 18 PRO 18 -5 ? ? ? B . n B 2 19 ARG 19 -4 ? ? ? B . n B 2 20 GLY 20 -3 ? ? ? B . n B 2 21 SER 21 -2 ? ? ? B . n B 2 22 GLY 22 -1 ? ? ? B . n B 2 23 GLY 23 0 ? ? ? B . n B 2 24 GLY 24 1 ? ? ? B . n B 2 25 GLY 25 2 ? ? ? B . n B 2 26 SER 26 3 3 SER SER B . n B 2 27 PRO 27 4 4 PRO PRO B . n B 2 28 GLU 28 5 5 GLU GLU B . n B 2 29 ASN 29 6 6 ASN ASN B . n B 2 30 TYR 30 7 7 TYR TYR B . n B 2 31 LEU 31 8 8 LEU LEU B . n B 2 32 PHE 32 9 9 PHE PHE B . n B 2 33 GLN 33 10 10 GLN GLN B . n B 2 34 GLY 34 11 11 GLY GLY B . n B 2 35 ARG 35 12 12 ARG ARG B . n B 2 36 GLN 36 13 13 GLN GLN B . n B 2 37 GLU 37 14 14 GLU GLU B . n B 2 38 CYS 38 15 15 CYS CYS B . n B 2 39 TYR 39 16 16 TYR TYR B . n B 2 40 ALA 40 17 17 ALA ALA B . n B 2 41 PHE 41 18 18 PHE PHE B . n B 2 42 ASN 42 19 19 ASN ASN B . n B 2 43 GLY 43 20 20 GLY GLY B . n B 2 44 THR 44 21 21 THR THR B . n B 2 45 GLN 45 22 22 GLN GLN B . n B 2 46 ARG 46 23 23 ARG ARG B . n B 2 47 PHE 47 24 24 PHE PHE B . n B 2 48 LEU 48 25 25 LEU LEU B . n B 2 49 GLU 49 26 26 GLU GLU B . n B 2 50 ARG 50 27 27 ARG ARG B . n B 2 51 TYR 51 28 28 TYR TYR B . n B 2 52 ILE 52 29 29 ILE ILE B . n B 2 53 TYR 53 30 30 TYR TYR B . n B 2 54 ASN 54 31 31 ASN ASN B . n B 2 55 ARG 55 32 32 ARG ARG B . n B 2 56 GLU 56 33 33 GLU GLU B . n B 2 57 GLU 57 34 34 GLU GLU B . n B 2 58 PHE 58 35 35 PHE PHE B . n B 2 59 VAL 59 36 36 VAL VAL B . n B 2 60 ARG 60 37 37 ARG ARG B . n B 2 61 PHE 61 38 38 PHE PHE B . n B 2 62 ASP 62 39 39 ASP ASP B . n B 2 63 SER 63 40 40 SER SER B . n B 2 64 ASP 64 41 41 ASP ASP B . n B 2 65 VAL 65 42 42 VAL VAL B . n B 2 66 GLY 66 43 43 GLY GLY B . n B 2 67 GLU 67 44 44 GLU GLU B . n B 2 68 PHE 68 45 45 PHE PHE B . n B 2 69 ARG 69 46 46 ARG ARG B . n B 2 70 ALA 70 47 47 ALA ALA B . n B 2 71 VAL 71 48 48 VAL VAL B . n B 2 72 THR 72 49 49 THR THR B . n B 2 73 GLU 73 50 50 GLU GLU B . n B 2 74 LEU 74 51 51 LEU LEU B . n B 2 75 GLY 75 52 52 GLY GLY B . n B 2 76 ARG 76 53 53 ARG ARG B . n B 2 77 PRO 77 54 54 PRO PRO B . n B 2 78 ASP 78 55 55 ASP ASP B . n B 2 79 GLU 79 56 56 GLU GLU B . n B 2 80 GLU 80 57 57 GLU GLU B . n B 2 81 TYR 81 58 58 TYR TYR B . n B 2 82 TRP 82 59 59 TRP TRP B . n B 2 83 ASN 83 60 60 ASN ASN B . n B 2 84 SER 84 61 61 SER SER B . n B 2 85 GLN 85 62 62 GLN GLN B . n B 2 86 LYS 86 63 63 LYS LYS B . n B 2 87 ASP 87 64 64 ASP ASP B . n B 2 88 ILE 88 65 65 ILE ILE B . n B 2 89 LEU 89 66 66 LEU LEU B . n B 2 90 GLU 90 67 67 GLU GLU B . n B 2 91 GLU 91 68 68 GLU GLU B . n B 2 92 GLU 92 69 69 GLU GLU B . n B 2 93 ARG 93 70 70 ARG ARG B . n B 2 94 ALA 94 71 71 ALA ALA B . n B 2 95 VAL 95 72 72 VAL VAL B . n B 2 96 PRO 96 73 73 PRO PRO B . n B 2 97 ASP 97 74 74 ASP ASP B . n B 2 98 ARG 98 75 75 ARG ARG B . n B 2 99 MET 99 76 76 MET MET B . n B 2 100 CYS 100 77 77 CYS CYS B . n B 2 101 ARG 101 78 78 ARG ARG B . n B 2 102 HIS 102 79 79 HIS HIS B . n B 2 103 ASN 103 80 80 ASN ASN B . n B 2 104 TYR 104 81 81 TYR TYR B . n B 2 105 GLU 105 82 82 GLU GLU B . n B 2 106 LEU 106 83 83 LEU LEU B . n B 2 107 GLY 107 84 84 GLY GLY B . n B 2 108 GLY 108 85 85 GLY GLY B . n B 2 109 PRO 109 86 86 PRO PRO B . n B 2 110 MET 110 87 87 MET MET B . n B 2 111 THR 111 88 88 THR THR B . n B 2 112 LEU 112 89 89 LEU LEU B . n B 2 113 GLN 113 90 90 GLN GLN B . n B 2 114 ARG 114 91 91 ARG ARG B . n B 2 115 ARG 115 92 92 ARG ARG B . n B 2 116 VAL 116 93 93 VAL VAL B . n B 2 117 GLN 117 94 94 GLN GLN B . n B 2 118 PRO 118 95 95 PRO PRO B . n B 2 119 ARG 119 96 96 ARG ARG B . n B 2 120 VAL 120 97 97 VAL VAL B . n B 2 121 ASN 121 98 98 ASN ASN B . n B 2 122 VAL 122 99 99 VAL VAL B . n B 2 123 SER 123 100 100 SER SER B . n B 2 124 PRO 124 101 101 PRO PRO B . n B 2 125 SER 125 102 102 SER SER B . n B 2 126 LYS 126 103 103 LYS LYS B . n B 2 127 LYS 127 104 104 LYS LYS B . n B 2 128 GLY 128 105 105 GLY GLY B . n B 2 129 PRO 129 106 ? ? ? B . n B 2 130 LEU 130 107 ? ? ? B . n B 2 131 GLN 131 108 ? ? ? B . n B 2 132 HIS 132 109 ? ? ? B . n B 2 133 HIS 133 110 110 HIS HIS B . n B 2 134 ASN 134 111 111 ASN ASN B . n B 2 135 LEU 135 112 112 LEU LEU B . n B 2 136 LEU 136 113 113 LEU LEU B . n B 2 137 VAL 137 114 114 VAL VAL B . n B 2 138 CYS 138 115 115 CYS CYS B . n B 2 139 HIS 139 116 116 HIS HIS B . n B 2 140 VAL 140 117 117 VAL VAL B . n B 2 141 THR 141 118 118 THR THR B . n B 2 142 ASP 142 119 119 ASP ASP B . n B 2 143 PHE 143 120 120 PHE PHE B . n B 2 144 TYR 144 121 121 TYR TYR B . n B 2 145 PRO 145 122 122 PRO PRO B . n B 2 146 GLY 146 123 123 GLY GLY B . n B 2 147 SER 147 124 124 SER SER B . n B 2 148 ILE 148 125 125 ILE ILE B . n B 2 149 GLN 149 126 126 GLN GLN B . n B 2 150 VAL 150 127 127 VAL VAL B . n B 2 151 ARG 151 128 128 ARG ARG B . n B 2 152 TRP 152 129 129 TRP TRP B . n B 2 153 PHE 153 130 130 PHE PHE B . n B 2 154 LEU 154 131 131 LEU LEU B . n B 2 155 ASN 155 132 132 ASN ASN B . n B 2 156 GLY 156 133 133 GLY GLY B . n B 2 157 GLN 157 134 134 GLN GLN B . n B 2 158 GLU 158 135 135 GLU GLU B . n B 2 159 GLU 159 136 136 GLU GLU B . n B 2 160 THR 160 137 137 THR THR B . n B 2 161 ALA 161 138 138 ALA ALA B . n B 2 162 GLY 162 139 139 GLY GLY B . n B 2 163 VAL 163 140 140 VAL VAL B . n B 2 164 VAL 164 141 141 VAL VAL B . n B 2 165 SER 165 142 142 SER SER B . n B 2 166 THR 166 143 143 THR THR B . n B 2 167 ASN 167 144 144 ASN ASN B . n B 2 168 LEU 168 145 145 LEU LEU B . n B 2 169 ILE 169 146 146 ILE ILE B . n B 2 170 ARG 170 147 147 ARG ARG B . n B 2 171 ASN 171 148 148 ASN ASN B . n B 2 172 GLY 172 149 149 GLY GLY B . n B 2 173 ASP 173 150 150 ASP ASP B . n B 2 174 TRP 174 151 151 TRP TRP B . n B 2 175 THR 175 152 152 THR THR B . n B 2 176 PHE 176 153 153 PHE PHE B . n B 2 177 GLN 177 154 154 GLN GLN B . n B 2 178 ILE 178 155 155 ILE ILE B . n B 2 179 LEU 179 156 156 LEU LEU B . n B 2 180 VAL 180 157 157 VAL VAL B . n B 2 181 MET 181 158 158 MET MET B . n B 2 182 LEU 182 159 159 LEU LEU B . n B 2 183 GLU 183 160 160 GLU GLU B . n B 2 184 MET 184 161 161 MET MET B . n B 2 185 THR 185 162 162 THR THR B . n B 2 186 PRO 186 163 163 PRO PRO B . n B 2 187 GLN 187 164 164 GLN GLN B . n B 2 188 GLN 188 165 165 GLN GLN B . n B 2 189 GLY 189 166 166 GLY GLY B . n B 2 190 ASP 190 167 167 ASP ASP B . n B 2 191 VAL 191 168 168 VAL VAL B . n B 2 192 TYR 192 169 169 TYR TYR B . n B 2 193 THR 193 170 170 THR THR B . n B 2 194 CYS 194 171 171 CYS CYS B . n B 2 195 GLN 195 172 172 GLN GLN B . n B 2 196 VAL 196 173 173 VAL VAL B . n B 2 197 GLU 197 174 174 GLU GLU B . n B 2 198 HIS 198 175 175 HIS HIS B . n B 2 199 THR 199 176 176 THR THR B . n B 2 200 SER 200 177 177 SER SER B . n B 2 201 LEU 201 178 178 LEU LEU B . n B 2 202 ASP 202 179 179 ASP ASP B . n B 2 203 SER 203 180 180 SER SER B . n B 2 204 PRO 204 181 181 PRO PRO B . n B 2 205 VAL 205 182 182 VAL VAL B . n B 2 206 THR 206 183 183 THR THR B . n B 2 207 VAL 207 184 184 VAL VAL B . n B 2 208 GLU 208 185 185 GLU GLU B . n B 2 209 TRP 209 186 186 TRP TRP B . n B 2 210 LYS 210 187 187 LYS LYS B . n B 2 211 ALA 211 188 188 ALA ALA B . n B 2 212 GLN 212 189 189 GLN GLN B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 182 1 NAG NAG A . D 3 NAG 1 183 3 NAG NAG A . E 3 NAG 1 190 2 NAG NAG B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B ASN 42 B ASN 19 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 118 A ASN 118 ? ASN 'GLYCOSYLATION SITE' 3 A ASN 78 A ASN 78 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6860 ? 1 MORE -16 ? 1 'SSA (A^2)' 19550 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-04-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2019-09-04 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' Other 7 4 'Structure model' Advisory 8 4 'Structure model' 'Atomic model' 9 4 'Structure model' 'Data collection' 10 4 'Structure model' 'Derived calculations' 11 4 'Structure model' 'Non-polymer description' 12 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' cell 2 3 'Structure model' struct_conn 3 4 'Structure model' atom_site 4 4 'Structure model' chem_comp 5 4 'Structure model' database_PDB_caveat 6 4 'Structure model' entity 7 4 'Structure model' pdbx_chem_comp_identifier 8 4 'Structure model' pdbx_entity_nonpoly 9 4 'Structure model' pdbx_nonpoly_scheme 10 4 'Structure model' pdbx_validate_chiral 11 4 'Structure model' struct_asym 12 4 'Structure model' struct_conn 13 4 'Structure model' struct_site 14 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_cell.length_a' 2 3 'Structure model' '_cell.length_b' 3 3 'Structure model' '_cell.length_c' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_atom_site.B_iso_or_equiv' 6 4 'Structure model' '_atom_site.Cartn_x' 7 4 'Structure model' '_atom_site.Cartn_y' 8 4 'Structure model' '_atom_site.Cartn_z' 9 4 'Structure model' '_atom_site.auth_atom_id' 10 4 'Structure model' '_atom_site.auth_comp_id' 11 4 'Structure model' '_atom_site.label_atom_id' 12 4 'Structure model' '_atom_site.label_comp_id' 13 4 'Structure model' '_atom_site.label_entity_id' 14 4 'Structure model' '_atom_site.type_symbol' 15 4 'Structure model' '_chem_comp.formula' 16 4 'Structure model' '_chem_comp.formula_weight' 17 4 'Structure model' '_chem_comp.id' 18 4 'Structure model' '_chem_comp.mon_nstd_flag' 19 4 'Structure model' '_chem_comp.name' 20 4 'Structure model' '_chem_comp.type' 21 4 'Structure model' '_pdbx_nonpoly_scheme.entity_id' 22 4 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 23 4 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 24 4 'Structure model' '_struct_asym.entity_id' 25 4 'Structure model' '_struct_conn.pdbx_dist_value' 26 4 'Structure model' '_struct_conn.pdbx_role' 27 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 28 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 54.0400 -37.2810 5.3790 -0.3006 -0.2296 -0.2938 -0.0666 -0.1266 -0.0450 1.8359 2.3171 4.3693 0.4828 -1.6206 -0.2668 0.0777 -0.0119 -0.0659 -0.1584 0.2297 0.2631 -0.0476 -0.8404 -0.5076 'X-RAY DIFFRACTION' 2 ? refined 51.8590 -53.4290 2.2190 -0.4210 -0.3195 -0.2652 -0.2041 -0.1996 -0.0155 2.5036 1.9270 4.2617 0.6654 -1.3225 -0.8028 -0.0501 -0.0407 0.0908 -0.1263 -0.2653 -0.0557 -0.0530 0.1003 -0.3247 'X-RAY DIFFRACTION' 3 ? refined 70.2640 -41.6900 -11.0350 -0.2836 -0.4628 -0.0249 -0.1997 0.0796 0.0229 1.6055 11.0906 3.0329 -3.7948 0.2394 -3.0525 0.5502 -0.9247 0.3745 0.7031 0.7665 -0.6661 -1.4606 1.5095 1.0758 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 181 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 3 B 189 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 B -22 B -8 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.3.0040 ? 3 HKL-2000 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 3LQZ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'DRA PEPTIDE + LINKER + HLA-DP2 BETA CHAIN' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 17 ? ? 0.31 -77.18 2 1 GLU A 28 ? ? 71.90 -15.12 3 1 MET A 31 ? ? -90.07 -62.71 4 1 GLN A 75 ? ? -74.57 -80.21 5 1 ARG A 76 ? ? -62.33 54.29 6 1 SER A 77 ? ? -175.50 19.77 7 1 ASN A 78 ? ? 39.27 36.52 8 1 LEU A 99 ? ? -26.68 114.22 9 1 PRO A 102 ? ? -36.21 125.30 10 1 THR A 129 ? ? -109.52 -68.25 11 1 GLU A 134 ? ? -170.74 149.50 12 1 PHE A 137 ? ? -59.50 91.90 13 1 PRO A 155 ? ? -47.88 94.17 14 1 ASP A 159 ? ? 179.40 120.65 15 1 LEU A 170 ? ? -103.29 -160.00 16 1 ASP A 171 ? ? -169.97 -24.69 17 1 PHE B 18 ? ? -112.67 -124.30 18 1 ARG B 32 ? ? 82.16 -19.32 19 1 ARG B 37 ? ? -179.71 144.45 20 1 PRO B 73 ? ? -38.55 -25.20 21 1 ARG B 75 ? ? -78.75 -95.41 22 1 THR B 88 ? ? -104.05 -64.12 23 1 PRO B 101 ? ? -64.34 -153.82 24 1 SER B 102 ? ? 135.52 82.46 25 1 LYS B 103 ? ? -126.65 -87.07 26 1 LYS B 104 ? ? -59.52 -176.38 27 1 ASN B 111 ? ? -170.05 121.36 28 1 ASP B 119 ? ? 70.94 60.16 29 1 ASP B 150 ? ? -153.94 31.45 30 1 THR B 162 ? ? -152.48 77.04 31 1 GLN B 164 ? ? -91.49 -85.49 32 1 GLN B 165 ? ? -152.24 -67.31 33 1 SER B 177 ? ? -70.44 -73.54 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C1 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id B _pdbx_validate_chiral.auth_comp_id NAG _pdbx_validate_chiral.auth_seq_id 190 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B LEU -7 ? B LEU 16 2 1 Y 1 B VAL -6 ? B VAL 17 3 1 Y 1 B PRO -5 ? B PRO 18 4 1 Y 1 B ARG -4 ? B ARG 19 5 1 Y 1 B GLY -3 ? B GLY 20 6 1 Y 1 B SER -2 ? B SER 21 7 1 Y 1 B GLY -1 ? B GLY 22 8 1 Y 1 B GLY 0 ? B GLY 23 9 1 Y 1 B GLY 1 ? B GLY 24 10 1 Y 1 B GLY 2 ? B GLY 25 11 1 Y 1 B PRO 106 ? B PRO 129 12 1 Y 1 B LEU 107 ? B LEU 130 13 1 Y 1 B GLN 108 ? B GLN 131 14 1 Y 1 B HIS 109 ? B HIS 132 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG #