data_3LWA # _entry.id 3LWA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3LWA RCSB RCSB057809 WWPDB D_1000057809 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC61547.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3LWA _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-02-23 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stein, A.J.' 1 'Weger, A.' 2 'Hendricks, R.' 3 'Cobb, G.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title 'The Crystal Structure of a Secreted Thiol-disulfide Isomerase from Corynebacterium glutamicum to 1.75A' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Stein, A.J.' 1 primary 'Weger, A.' 2 primary 'Hendricks, R.' 3 primary 'Cobb, G.' 4 primary 'Joachimiak, A.' 5 # _cell.entry_id 3LWA _cell.length_a 38.818 _cell.length_b 35.376 _cell.length_c 53.718 _cell.angle_alpha 90.000 _cell.angle_beta 96.690 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.Int_Tables_number 4 _symmetry.entry_id 3LWA _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Secreted thiol-disulfide isomerase' 19824.275 1 ? ? 'sequence database residues 25-187' ? 2 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 3 water nat water 18.015 51 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Thiol-disulfide isomerase, thioredoxins' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SDSTAGTDAVAVGGTFQFHSPDGK(MSE)EIFYDEADRQQLPDIGGDSL(MSE)EEGTQINLSDFENQVVILNAWGQWCA PCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPF(MSE)TAASLGGVPASVIP TTIVLDKQHRPAAVFLREVTSKDVLDVALPLVDEA ; _entity_poly.pdbx_seq_one_letter_code_can ;SDSTAGTDAVAVGGTFQFHSPDGKMEIFYDEADRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDD LQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPA AVFLREVTSKDVLDVALPLVDEA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC61547.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASP n 1 3 SER n 1 4 THR n 1 5 ALA n 1 6 GLY n 1 7 THR n 1 8 ASP n 1 9 ALA n 1 10 VAL n 1 11 ALA n 1 12 VAL n 1 13 GLY n 1 14 GLY n 1 15 THR n 1 16 PHE n 1 17 GLN n 1 18 PHE n 1 19 HIS n 1 20 SER n 1 21 PRO n 1 22 ASP n 1 23 GLY n 1 24 LYS n 1 25 MSE n 1 26 GLU n 1 27 ILE n 1 28 PHE n 1 29 TYR n 1 30 ASP n 1 31 GLU n 1 32 ALA n 1 33 ASP n 1 34 ARG n 1 35 GLN n 1 36 GLN n 1 37 LEU n 1 38 PRO n 1 39 ASP n 1 40 ILE n 1 41 GLY n 1 42 GLY n 1 43 ASP n 1 44 SER n 1 45 LEU n 1 46 MSE n 1 47 GLU n 1 48 GLU n 1 49 GLY n 1 50 THR n 1 51 GLN n 1 52 ILE n 1 53 ASN n 1 54 LEU n 1 55 SER n 1 56 ASP n 1 57 PHE n 1 58 GLU n 1 59 ASN n 1 60 GLN n 1 61 VAL n 1 62 VAL n 1 63 ILE n 1 64 LEU n 1 65 ASN n 1 66 ALA n 1 67 TRP n 1 68 GLY n 1 69 GLN n 1 70 TRP n 1 71 CYS n 1 72 ALA n 1 73 PRO n 1 74 CYS n 1 75 ARG n 1 76 SER n 1 77 GLU n 1 78 SER n 1 79 ASP n 1 80 ASP n 1 81 LEU n 1 82 GLN n 1 83 ILE n 1 84 ILE n 1 85 HIS n 1 86 GLU n 1 87 GLU n 1 88 LEU n 1 89 GLN n 1 90 ALA n 1 91 ALA n 1 92 GLY n 1 93 ASN n 1 94 GLY n 1 95 ASP n 1 96 THR n 1 97 PRO n 1 98 GLY n 1 99 GLY n 1 100 THR n 1 101 VAL n 1 102 LEU n 1 103 GLY n 1 104 ILE n 1 105 ASN n 1 106 VAL n 1 107 ARG n 1 108 ASP n 1 109 TYR n 1 110 SER n 1 111 ARG n 1 112 ASP n 1 113 ILE n 1 114 ALA n 1 115 GLN n 1 116 ASP n 1 117 PHE n 1 118 VAL n 1 119 THR n 1 120 ASP n 1 121 ASN n 1 122 GLY n 1 123 LEU n 1 124 ASP n 1 125 TYR n 1 126 PRO n 1 127 SER n 1 128 ILE n 1 129 TYR n 1 130 ASP n 1 131 PRO n 1 132 PRO n 1 133 PHE n 1 134 MSE n 1 135 THR n 1 136 ALA n 1 137 ALA n 1 138 SER n 1 139 LEU n 1 140 GLY n 1 141 GLY n 1 142 VAL n 1 143 PRO n 1 144 ALA n 1 145 SER n 1 146 VAL n 1 147 ILE n 1 148 PRO n 1 149 THR n 1 150 THR n 1 151 ILE n 1 152 VAL n 1 153 LEU n 1 154 ASP n 1 155 LYS n 1 156 GLN n 1 157 HIS n 1 158 ARG n 1 159 PRO n 1 160 ALA n 1 161 ALA n 1 162 VAL n 1 163 PHE n 1 164 LEU n 1 165 ARG n 1 166 GLU n 1 167 VAL n 1 168 THR n 1 169 SER n 1 170 LYS n 1 171 ASP n 1 172 VAL n 1 173 LEU n 1 174 ASP n 1 175 VAL n 1 176 ALA n 1 177 LEU n 1 178 PRO n 1 179 LEU n 1 180 VAL n 1 181 ASP n 1 182 GLU n 1 183 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'cg0520, Cgl0439' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 13032' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details pMCSG19 _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Corynebacterium glutamicum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1718 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8NT71_CORGL _struct_ref.pdbx_db_accession Q8NT71 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SDSTAGTDAVAVGGTFQFHSPDGKMEIFYDEADRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDD LQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPA AVFLREVTSKDVLDVALPLVDEA ; _struct_ref.pdbx_align_begin 25 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3LWA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 183 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8NT71 _struct_ref_seq.db_align_beg 25 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 207 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 25 _struct_ref_seq.pdbx_auth_seq_align_end 207 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3LWA _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 34.0 _exptl_crystal.density_Matthews 1.86 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.pdbx_details '16% PEG 8000, 20% Glycerol, 0.04M K3PO4, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-01-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Double crystal' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength_list 0.9794 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3LWA _reflns.d_resolution_high 1.750 _reflns.d_resolution_low 50.000 _reflns.number_obs 14734 _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_netI_over_sigmaI 10.700 _reflns.pdbx_chi_squared 2.272 _reflns.pdbx_redundancy 3.600 _reflns.percent_possible_obs 99.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.75 1.81 ? ? ? 0.573 ? ? 1.312 3.70 ? 1434 99.30 ? 1 1.81 1.89 ? ? ? 0.374 ? ? 1.416 3.70 ? 1472 99.70 ? 2 1.89 1.97 ? ? ? 0.254 ? ? 1.361 3.70 ? 1464 99.80 ? 3 1.97 2.07 ? ? ? 0.192 ? ? 1.513 3.70 ? 1498 100.00 ? 4 2.07 2.20 ? ? ? 0.146 ? ? 1.747 3.70 ? 1460 99.70 ? 5 2.20 2.38 ? ? ? 0.118 ? ? 2.036 3.70 ? 1480 99.50 ? 6 2.38 2.61 ? ? ? 0.095 ? ? 2.284 3.70 ? 1491 99.60 ? 7 2.61 2.99 ? ? ? 0.083 ? ? 2.984 3.60 ? 1475 98.80 ? 8 2.99 3.77 ? ? ? 0.058 ? ? 3.402 3.50 ? 1467 98.30 ? 9 3.77 50.00 ? ? ? 0.054 ? ? 4.983 3.40 ? 1493 95.80 ? 10 # _refine.entry_id 3LWA _refine.ls_d_res_high 1.750 _refine.ls_d_res_low 26.680 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.650 _refine.ls_number_reflns_obs 14724 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY ; _refine.ls_R_factor_obs 0.201 _refine.ls_R_factor_R_work 0.200 _refine.ls_R_factor_R_free 0.230 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 751 _refine.B_iso_mean 24.394 _refine.aniso_B[1][1] -0.010 _refine.aniso_B[2][2] -0.010 _refine.aniso_B[3][3] 0.010 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.010 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.946 _refine.pdbx_overall_ESU_R 0.138 _refine.pdbx_overall_ESU_R_Free 0.125 _refine.overall_SU_ML 0.094 _refine.overall_SU_B 2.966 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1251 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 51 _refine_hist.number_atoms_total 1304 _refine_hist.d_res_high 1.750 _refine_hist.d_res_low 26.680 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1279 0.011 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1754 1.331 1.961 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 169 5.920 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 58 38.515 25.345 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 181 13.371 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 11.088 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 203 0.093 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1003 0.006 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 836 0.773 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1344 1.474 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 443 2.592 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 408 4.193 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.746 _refine_ls_shell.d_res_low 1.791 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 93.150 _refine_ls_shell.number_reflns_R_work 954 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.300 _refine_ls_shell.R_factor_R_free 0.307 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1007 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3LWA _struct.title 'The Crystal Structure of a Secreted Thiol-disulfide Isomerase from Corynebacterium glutamicum to 1.75A' _struct.pdbx_descriptor 'Secreted thiol-disulfide isomerase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LWA _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text ;Thiol-disulfide, isomerase, thioredoxin, Corynebacterium, glutamicum, PSI, MCSG, Structural Genomics, Midwest Center for Structural Genomics, Protein Structure Initiative ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 30 ? ARG A 34 ? ASP A 54 ARG A 58 5 ? 5 HELX_P HELX_P2 2 SER A 55 ? GLU A 58 ? SER A 79 GLU A 82 5 ? 4 HELX_P HELX_P3 3 CYS A 71 ? ALA A 91 ? CYS A 95 ALA A 115 1 ? 21 HELX_P HELX_P4 4 SER A 110 ? ASN A 121 ? SER A 134 ASN A 145 1 ? 12 HELX_P HELX_P5 5 PHE A 133 ? LEU A 139 ? PHE A 157 LEU A 163 5 ? 7 HELX_P HELX_P6 6 THR A 168 ? GLU A 182 ? THR A 192 GLU A 206 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LYS 24 C ? ? ? 1_555 A MSE 25 N ? ? A LYS 48 A MSE 49 1_555 ? ? ? ? ? ? ? 1.334 ? covale2 covale ? ? A MSE 25 C ? ? ? 1_555 A GLU 26 N ? ? A MSE 49 A GLU 50 1_555 ? ? ? ? ? ? ? 1.324 ? covale3 covale ? ? A LEU 45 C ? ? ? 1_555 A MSE 46 N ? ? A LEU 69 A MSE 70 1_555 ? ? ? ? ? ? ? 1.333 ? covale4 covale ? ? A MSE 46 C ? ? ? 1_555 A GLU 47 N ? ? A MSE 70 A GLU 71 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale ? ? A PHE 133 C ? ? ? 1_555 A MSE 134 N ? ? A PHE 157 A MSE 158 1_555 ? ? ? ? ? ? ? 1.336 ? covale6 covale ? ? A MSE 134 C ? ? ? 1_555 A THR 135 N ? ? A MSE 158 A THR 159 1_555 ? ? ? ? ? ? ? 1.330 ? metalc1 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 1 A HOH 224 1_555 ? ? ? ? ? ? ? 2.098 ? metalc2 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 1 A HOH 221 1_555 ? ? ? ? ? ? ? 2.102 ? metalc3 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 1 A HOH 226 1_555 ? ? ? ? ? ? ? 2.104 ? metalc4 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 1 A HOH 222 1_555 ? ? ? ? ? ? ? 2.130 ? metalc5 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 1 A HOH 223 1_555 ? ? ? ? ? ? ? 2.177 ? metalc6 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 1 A HOH 225 1_555 ? ? ? ? ? ? ? 2.208 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ILE _struct_mon_prot_cis.label_seq_id 147 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ILE _struct_mon_prot_cis.auth_seq_id 171 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 148 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 172 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.81 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 26 ? PHE A 28 ? GLU A 50 PHE A 52 A 2 PRO A 159 ? PHE A 163 ? PRO A 183 PHE A 187 A 3 THR A 149 ? LEU A 153 ? THR A 173 LEU A 177 A 4 VAL A 61 ? TRP A 67 ? VAL A 85 TRP A 91 A 5 GLY A 99 ? ASN A 105 ? GLY A 123 ASN A 129 A 6 SER A 127 ? TYR A 129 ? SER A 151 TYR A 153 B 1 GLY A 41 ? ASP A 43 ? GLY A 65 ASP A 67 B 2 GLN A 51 ? ASN A 53 ? GLN A 75 ASN A 77 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 27 ? N ILE A 51 O VAL A 162 ? O VAL A 186 A 2 3 O ALA A 160 ? O ALA A 184 N VAL A 152 ? N VAL A 176 A 3 4 O LEU A 153 ? O LEU A 177 N VAL A 62 ? N VAL A 86 A 4 5 N ASN A 65 ? N ASN A 89 O ILE A 104 ? O ILE A 128 A 5 6 N ASN A 105 ? N ASN A 129 O ILE A 128 ? O ILE A 152 B 1 2 N GLY A 42 ? N GLY A 66 O ILE A 52 ? O ILE A 76 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CA A 1' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CA A 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH D . ? HOH A 221 . ? 1_555 ? 2 AC1 6 HOH D . ? HOH A 222 . ? 1_555 ? 3 AC1 6 HOH D . ? HOH A 223 . ? 1_555 ? 4 AC1 6 HOH D . ? HOH A 224 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH A 225 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 226 . ? 1_555 ? 7 AC2 4 SER A 44 ? SER A 68 . ? 1_555 ? 8 AC2 4 LEU A 45 ? LEU A 69 . ? 1_555 ? 9 AC2 4 MSE A 46 ? MSE A 70 . ? 1_555 ? 10 AC2 4 SER A 127 ? SER A 151 . ? 1_555 ? # _atom_sites.entry_id 3LWA _atom_sites.fract_transf_matrix[1][1] 0.025761 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003024 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028268 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018744 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 25 ? ? ? A . n A 1 2 ASP 2 26 ? ? ? A . n A 1 3 SER 3 27 ? ? ? A . n A 1 4 THR 4 28 ? ? ? A . n A 1 5 ALA 5 29 ? ? ? A . n A 1 6 GLY 6 30 ? ? ? A . n A 1 7 THR 7 31 ? ? ? A . n A 1 8 ASP 8 32 ? ? ? A . n A 1 9 ALA 9 33 ? ? ? A . n A 1 10 VAL 10 34 ? ? ? A . n A 1 11 ALA 11 35 ? ? ? A . n A 1 12 VAL 12 36 ? ? ? A . n A 1 13 GLY 13 37 37 GLY GLY A . n A 1 14 GLY 14 38 38 GLY GLY A . n A 1 15 THR 15 39 39 THR THR A . n A 1 16 PHE 16 40 40 PHE PHE A . n A 1 17 GLN 17 41 41 GLN GLN A . n A 1 18 PHE 18 42 42 PHE PHE A . n A 1 19 HIS 19 43 43 HIS HIS A . n A 1 20 SER 20 44 44 SER SER A . n A 1 21 PRO 21 45 45 PRO PRO A . n A 1 22 ASP 22 46 46 ASP ASP A . n A 1 23 GLY 23 47 47 GLY GLY A . n A 1 24 LYS 24 48 48 LYS LYS A . n A 1 25 MSE 25 49 49 MSE MSE A . n A 1 26 GLU 26 50 50 GLU GLU A . n A 1 27 ILE 27 51 51 ILE ILE A . n A 1 28 PHE 28 52 52 PHE PHE A . n A 1 29 TYR 29 53 53 TYR TYR A . n A 1 30 ASP 30 54 54 ASP ASP A . n A 1 31 GLU 31 55 55 GLU GLU A . n A 1 32 ALA 32 56 56 ALA ALA A . n A 1 33 ASP 33 57 57 ASP ASP A . n A 1 34 ARG 34 58 58 ARG ARG A . n A 1 35 GLN 35 59 59 GLN GLN A . n A 1 36 GLN 36 60 60 GLN GLN A . n A 1 37 LEU 37 61 61 LEU LEU A . n A 1 38 PRO 38 62 62 PRO PRO A . n A 1 39 ASP 39 63 63 ASP ASP A . n A 1 40 ILE 40 64 64 ILE ILE A . n A 1 41 GLY 41 65 65 GLY GLY A . n A 1 42 GLY 42 66 66 GLY GLY A . n A 1 43 ASP 43 67 67 ASP ASP A . n A 1 44 SER 44 68 68 SER SER A . n A 1 45 LEU 45 69 69 LEU LEU A . n A 1 46 MSE 46 70 70 MSE MSE A . n A 1 47 GLU 47 71 71 GLU GLU A . n A 1 48 GLU 48 72 72 GLU GLU A . n A 1 49 GLY 49 73 73 GLY GLY A . n A 1 50 THR 50 74 74 THR THR A . n A 1 51 GLN 51 75 75 GLN GLN A . n A 1 52 ILE 52 76 76 ILE ILE A . n A 1 53 ASN 53 77 77 ASN ASN A . n A 1 54 LEU 54 78 78 LEU LEU A . n A 1 55 SER 55 79 79 SER SER A . n A 1 56 ASP 56 80 80 ASP ASP A . n A 1 57 PHE 57 81 81 PHE PHE A . n A 1 58 GLU 58 82 82 GLU GLU A . n A 1 59 ASN 59 83 83 ASN ASN A . n A 1 60 GLN 60 84 84 GLN GLN A . n A 1 61 VAL 61 85 85 VAL VAL A . n A 1 62 VAL 62 86 86 VAL VAL A . n A 1 63 ILE 63 87 87 ILE ILE A . n A 1 64 LEU 64 88 88 LEU LEU A . n A 1 65 ASN 65 89 89 ASN ASN A . n A 1 66 ALA 66 90 90 ALA ALA A . n A 1 67 TRP 67 91 91 TRP TRP A . n A 1 68 GLY 68 92 92 GLY GLY A . n A 1 69 GLN 69 93 93 GLN GLN A . n A 1 70 TRP 70 94 94 TRP TRP A . n A 1 71 CYS 71 95 95 CYS CYS A . n A 1 72 ALA 72 96 96 ALA ALA A . n A 1 73 PRO 73 97 97 PRO PRO A . n A 1 74 CYS 74 98 98 CYS CYS A . n A 1 75 ARG 75 99 99 ARG ARG A . n A 1 76 SER 76 100 100 SER SER A . n A 1 77 GLU 77 101 101 GLU GLU A . n A 1 78 SER 78 102 102 SER SER A . n A 1 79 ASP 79 103 103 ASP ASP A . n A 1 80 ASP 80 104 104 ASP ASP A . n A 1 81 LEU 81 105 105 LEU LEU A . n A 1 82 GLN 82 106 106 GLN GLN A . n A 1 83 ILE 83 107 107 ILE ILE A . n A 1 84 ILE 84 108 108 ILE ILE A . n A 1 85 HIS 85 109 109 HIS HIS A . n A 1 86 GLU 86 110 110 GLU GLU A . n A 1 87 GLU 87 111 111 GLU GLU A . n A 1 88 LEU 88 112 112 LEU LEU A . n A 1 89 GLN 89 113 113 GLN GLN A . n A 1 90 ALA 90 114 114 ALA ALA A . n A 1 91 ALA 91 115 115 ALA ALA A . n A 1 92 GLY 92 116 116 GLY GLY A . n A 1 93 ASN 93 117 ? ? ? A . n A 1 94 GLY 94 118 ? ? ? A . n A 1 95 ASP 95 119 ? ? ? A . n A 1 96 THR 96 120 120 THR THR A . n A 1 97 PRO 97 121 121 PRO PRO A . n A 1 98 GLY 98 122 122 GLY GLY A . n A 1 99 GLY 99 123 123 GLY GLY A . n A 1 100 THR 100 124 124 THR THR A . n A 1 101 VAL 101 125 125 VAL VAL A . n A 1 102 LEU 102 126 126 LEU LEU A . n A 1 103 GLY 103 127 127 GLY GLY A . n A 1 104 ILE 104 128 128 ILE ILE A . n A 1 105 ASN 105 129 129 ASN ASN A . n A 1 106 VAL 106 130 130 VAL VAL A . n A 1 107 ARG 107 131 131 ARG ARG A . n A 1 108 ASP 108 132 132 ASP ASP A . n A 1 109 TYR 109 133 133 TYR TYR A . n A 1 110 SER 110 134 134 SER SER A . n A 1 111 ARG 111 135 135 ARG ARG A . n A 1 112 ASP 112 136 136 ASP ASP A . n A 1 113 ILE 113 137 137 ILE ILE A . n A 1 114 ALA 114 138 138 ALA ALA A . n A 1 115 GLN 115 139 139 GLN GLN A . n A 1 116 ASP 116 140 140 ASP ASP A . n A 1 117 PHE 117 141 141 PHE PHE A . n A 1 118 VAL 118 142 142 VAL VAL A . n A 1 119 THR 119 143 143 THR THR A . n A 1 120 ASP 120 144 144 ASP ASP A . n A 1 121 ASN 121 145 145 ASN ASN A . n A 1 122 GLY 122 146 146 GLY GLY A . n A 1 123 LEU 123 147 147 LEU LEU A . n A 1 124 ASP 124 148 148 ASP ASP A . n A 1 125 TYR 125 149 149 TYR TYR A . n A 1 126 PRO 126 150 150 PRO PRO A . n A 1 127 SER 127 151 151 SER SER A . n A 1 128 ILE 128 152 152 ILE ILE A . n A 1 129 TYR 129 153 153 TYR TYR A . n A 1 130 ASP 130 154 154 ASP ASP A . n A 1 131 PRO 131 155 155 PRO PRO A . n A 1 132 PRO 132 156 156 PRO PRO A . n A 1 133 PHE 133 157 157 PHE PHE A . n A 1 134 MSE 134 158 158 MSE MSE A . n A 1 135 THR 135 159 159 THR THR A . n A 1 136 ALA 136 160 160 ALA ALA A . n A 1 137 ALA 137 161 161 ALA ALA A . n A 1 138 SER 138 162 162 SER SER A . n A 1 139 LEU 139 163 163 LEU LEU A . n A 1 140 GLY 140 164 164 GLY GLY A . n A 1 141 GLY 141 165 165 GLY GLY A . n A 1 142 VAL 142 166 166 VAL VAL A . n A 1 143 PRO 143 167 167 PRO PRO A . n A 1 144 ALA 144 168 168 ALA ALA A . n A 1 145 SER 145 169 169 SER SER A . n A 1 146 VAL 146 170 170 VAL VAL A . n A 1 147 ILE 147 171 171 ILE ILE A . n A 1 148 PRO 148 172 172 PRO PRO A . n A 1 149 THR 149 173 173 THR THR A . n A 1 150 THR 150 174 174 THR THR A . n A 1 151 ILE 151 175 175 ILE ILE A . n A 1 152 VAL 152 176 176 VAL VAL A . n A 1 153 LEU 153 177 177 LEU LEU A . n A 1 154 ASP 154 178 178 ASP ASP A . n A 1 155 LYS 155 179 179 LYS LYS A . n A 1 156 GLN 156 180 180 GLN GLN A . n A 1 157 HIS 157 181 181 HIS HIS A . n A 1 158 ARG 158 182 182 ARG ARG A . n A 1 159 PRO 159 183 183 PRO PRO A . n A 1 160 ALA 160 184 184 ALA ALA A . n A 1 161 ALA 161 185 185 ALA ALA A . n A 1 162 VAL 162 186 186 VAL VAL A . n A 1 163 PHE 163 187 187 PHE PHE A . n A 1 164 LEU 164 188 188 LEU LEU A . n A 1 165 ARG 165 189 189 ARG ARG A . n A 1 166 GLU 166 190 190 GLU GLU A . n A 1 167 VAL 167 191 191 VAL VAL A . n A 1 168 THR 168 192 192 THR THR A . n A 1 169 SER 169 193 193 SER SER A . n A 1 170 LYS 170 194 194 LYS LYS A . n A 1 171 ASP 171 195 195 ASP ASP A . n A 1 172 VAL 172 196 196 VAL VAL A . n A 1 173 LEU 173 197 197 LEU LEU A . n A 1 174 ASP 174 198 198 ASP ASP A . n A 1 175 VAL 175 199 199 VAL VAL A . n A 1 176 ALA 176 200 200 ALA ALA A . n A 1 177 LEU 177 201 201 LEU LEU A . n A 1 178 PRO 178 202 202 PRO PRO A . n A 1 179 LEU 179 203 203 LEU LEU A . n A 1 180 VAL 180 204 204 VAL VAL A . n A 1 181 ASP 181 205 205 ASP ASP A . n A 1 182 GLU 182 206 206 GLU GLU A . n A 1 183 ALA 183 207 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 1 1 CA CA A . C 2 CA 1 2 2 CA CA A . D 3 HOH 1 3 3 HOH HOH A . D 3 HOH 2 4 4 HOH HOH A . D 3 HOH 3 5 5 HOH HOH A . D 3 HOH 4 6 6 HOH HOH A . D 3 HOH 5 7 7 HOH HOH A . D 3 HOH 6 8 8 HOH HOH A . D 3 HOH 7 9 9 HOH HOH A . D 3 HOH 8 10 10 HOH HOH A . D 3 HOH 9 11 11 HOH HOH A . D 3 HOH 10 12 12 HOH HOH A . D 3 HOH 11 13 13 HOH HOH A . D 3 HOH 12 14 14 HOH HOH A . D 3 HOH 13 15 15 HOH HOH A . D 3 HOH 14 16 16 HOH HOH A . D 3 HOH 15 17 17 HOH HOH A . D 3 HOH 16 18 18 HOH HOH A . D 3 HOH 17 19 19 HOH HOH A . D 3 HOH 18 20 20 HOH HOH A . D 3 HOH 19 21 21 HOH HOH A . D 3 HOH 20 22 22 HOH HOH A . D 3 HOH 21 23 23 HOH HOH A . D 3 HOH 22 24 24 HOH HOH A . D 3 HOH 23 208 1 HOH HOH A . D 3 HOH 24 209 2 HOH HOH A . D 3 HOH 25 210 25 HOH HOH A . D 3 HOH 26 211 26 HOH HOH A . D 3 HOH 27 212 27 HOH HOH A . D 3 HOH 28 213 28 HOH HOH A . D 3 HOH 29 214 29 HOH HOH A . D 3 HOH 30 215 30 HOH HOH A . D 3 HOH 31 216 31 HOH HOH A . D 3 HOH 32 217 32 HOH HOH A . D 3 HOH 33 218 33 HOH HOH A . D 3 HOH 34 219 34 HOH HOH A . D 3 HOH 35 220 35 HOH HOH A . D 3 HOH 36 221 36 HOH HOH A . D 3 HOH 37 222 37 HOH HOH A . D 3 HOH 38 223 38 HOH HOH A . D 3 HOH 39 224 39 HOH HOH A . D 3 HOH 40 225 40 HOH HOH A . D 3 HOH 41 226 41 HOH HOH A . D 3 HOH 42 227 42 HOH HOH A . D 3 HOH 43 228 43 HOH HOH A . D 3 HOH 44 229 44 HOH HOH A . D 3 HOH 45 230 45 HOH HOH A . D 3 HOH 46 231 46 HOH HOH A . D 3 HOH 47 232 47 HOH HOH A . D 3 HOH 48 233 48 HOH HOH A . D 3 HOH 49 234 49 HOH HOH A . D 3 HOH 50 235 50 HOH HOH A . D 3 HOH 51 236 51 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 25 A MSE 49 ? MET SELENOMETHIONINE 2 A MSE 46 A MSE 70 ? MET SELENOMETHIONINE 3 A MSE 134 A MSE 158 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 224 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 221 ? 1_555 84.4 ? 2 O ? D HOH . ? A HOH 224 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 226 ? 1_555 96.5 ? 3 O ? D HOH . ? A HOH 221 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 226 ? 1_555 179.1 ? 4 O ? D HOH . ? A HOH 224 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 222 ? 1_555 167.5 ? 5 O ? D HOH . ? A HOH 221 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 222 ? 1_555 83.3 ? 6 O ? D HOH . ? A HOH 226 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 222 ? 1_555 95.8 ? 7 O ? D HOH . ? A HOH 224 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 223 ? 1_555 87.1 ? 8 O ? D HOH . ? A HOH 221 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 223 ? 1_555 93.4 ? 9 O ? D HOH . ? A HOH 226 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 223 ? 1_555 86.7 ? 10 O ? D HOH . ? A HOH 222 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 223 ? 1_555 96.0 ? 11 O ? D HOH . ? A HOH 224 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 225 ? 1_555 89.7 ? 12 O ? D HOH . ? A HOH 221 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 225 ? 1_555 94.4 ? 13 O ? D HOH . ? A HOH 226 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 225 ? 1_555 85.6 ? 14 O ? D HOH . ? A HOH 222 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 225 ? 1_555 88.8 ? 15 O ? D HOH . ? A HOH 223 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 225 ? 1_555 171.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 5 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 6 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 7 SHELX . ? ? ? ? phasing ? ? ? 8 MLPHARE . ? ? ? ? phasing ? ? ? 9 RESOLVE . ? ? ? ? phasing ? ? ? 10 ARP/wARP . ? ? ? ? 'model building' ? ? ? 11 Coot . ? ? ? ? 'model building' ? ? ? 12 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LEU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 188 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -101.69 _pdbx_validate_torsion.psi 41.58 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 41 ? CG ? A GLN 17 CG 2 1 Y 1 A GLN 41 ? CD ? A GLN 17 CD 3 1 Y 1 A GLN 41 ? OE1 ? A GLN 17 OE1 4 1 Y 1 A GLN 41 ? NE2 ? A GLN 17 NE2 5 1 Y 1 A HIS 43 ? CG ? A HIS 19 CG 6 1 Y 1 A HIS 43 ? ND1 ? A HIS 19 ND1 7 1 Y 1 A HIS 43 ? CD2 ? A HIS 19 CD2 8 1 Y 1 A HIS 43 ? CE1 ? A HIS 19 CE1 9 1 Y 1 A HIS 43 ? NE2 ? A HIS 19 NE2 10 1 Y 1 A ASP 46 ? CG ? A ASP 22 CG 11 1 Y 1 A ASP 46 ? OD1 ? A ASP 22 OD1 12 1 Y 1 A ASP 46 ? OD2 ? A ASP 22 OD2 13 1 Y 1 A LYS 48 ? CG ? A LYS 24 CG 14 1 Y 1 A LYS 48 ? CD ? A LYS 24 CD 15 1 Y 1 A LYS 48 ? CE ? A LYS 24 CE 16 1 Y 1 A LYS 48 ? NZ ? A LYS 24 NZ 17 1 Y 1 A ASP 57 ? CG ? A ASP 33 CG 18 1 Y 1 A ASP 57 ? OD1 ? A ASP 33 OD1 19 1 Y 1 A ASP 57 ? OD2 ? A ASP 33 OD2 20 1 Y 1 A GLU 71 ? CG ? A GLU 47 CG 21 1 Y 1 A GLU 71 ? CD ? A GLU 47 CD 22 1 Y 1 A GLU 71 ? OE1 ? A GLU 47 OE1 23 1 Y 1 A GLU 71 ? OE2 ? A GLU 47 OE2 24 1 Y 1 A ASP 136 ? CG ? A ASP 112 CG 25 1 Y 1 A ASP 136 ? OD1 ? A ASP 112 OD1 26 1 Y 1 A ASP 136 ? OD2 ? A ASP 112 OD2 27 1 Y 1 A MSE 158 ? CG ? A MSE 134 CG 28 1 Y 1 A MSE 158 ? SE ? A MSE 134 SE 29 1 Y 1 A MSE 158 ? CE ? A MSE 134 CE 30 1 Y 1 A GLU 190 ? CG ? A GLU 166 CG 31 1 Y 1 A GLU 190 ? CD ? A GLU 166 CD 32 1 Y 1 A GLU 190 ? OE1 ? A GLU 166 OE1 33 1 Y 1 A GLU 190 ? OE2 ? A GLU 166 OE2 34 1 Y 1 A LYS 194 ? CG ? A LYS 170 CG 35 1 Y 1 A LYS 194 ? CD ? A LYS 170 CD 36 1 Y 1 A LYS 194 ? CE ? A LYS 170 CE 37 1 Y 1 A LYS 194 ? NZ ? A LYS 170 NZ 38 1 Y 1 A GLU 206 ? CG ? A GLU 182 CG 39 1 Y 1 A GLU 206 ? CD ? A GLU 182 CD 40 1 Y 1 A GLU 206 ? OE1 ? A GLU 182 OE1 41 1 Y 1 A GLU 206 ? OE2 ? A GLU 182 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 25 ? A SER 1 2 1 Y 1 A ASP 26 ? A ASP 2 3 1 Y 1 A SER 27 ? A SER 3 4 1 Y 1 A THR 28 ? A THR 4 5 1 Y 1 A ALA 29 ? A ALA 5 6 1 Y 1 A GLY 30 ? A GLY 6 7 1 Y 1 A THR 31 ? A THR 7 8 1 Y 1 A ASP 32 ? A ASP 8 9 1 Y 1 A ALA 33 ? A ALA 9 10 1 Y 1 A VAL 34 ? A VAL 10 11 1 Y 1 A ALA 35 ? A ALA 11 12 1 Y 1 A VAL 36 ? A VAL 12 13 1 Y 1 A ASN 117 ? A ASN 93 14 1 Y 1 A GLY 118 ? A GLY 94 15 1 Y 1 A ASP 119 ? A ASP 95 16 1 Y 1 A ALA 207 ? A ALA 183 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH #