data_3M6F # _entry.id 3M6F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3M6F pdb_00003m6f 10.2210/pdb3m6f/pdb RCSB RCSB058166 ? ? WWPDB D_1000058166 ? ? # _pdbx_database_status.entry_id 3M6F _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-03-15 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Sheriff, S.' _audit_author.pdbx_ordinal 1 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Small molecule antagonist of leukocyte function associated antigen-1 (LFA-1): structure-activity relationships leading to the identification of 6-((5S,9R)-9-(4-cyanophenyl)-3-(3,5-dichlorophenyl)-1-methyl-2,4-dioxo-1,3,7-triazaspiro[4.4]nonan-7-yl)nicotinic acid (BMS-688521). ; J.Med.Chem. 53 3814 3830 2010 JMCMAR US 0022-2623 0151 ? 20405922 10.1021/jm100348u 1 ;Discovery and Development of 5-[(5S,9R)-9-(4-Cyanophenyl)-3-(3,5-dichlorophenyl)-1-methyl-2,4-dioxo-1,3,7-triazaspiro [4.4]non-7-yl]methyl]-3-thiophenecarboxylicacid (BMS-587101) -- Small Molecule Antagonist of LFA-1 ; J.Med.Chem. 49 6946 6949 2006 JMCMAR US 0022-2623 0151 ? 17125246 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Watterson, S.H.' 1 ? primary 'Xiao, Z.' 2 ? primary 'Dodd, D.S.' 3 ? primary 'Tortolani, D.R.' 4 ? primary 'Vaccaro, W.' 5 ? primary 'Potin, D.' 6 ? primary 'Launay, M.' 7 ? primary 'Stetsko, D.K.' 8 ? primary 'Skala, S.' 9 ? primary 'Davis, P.M.' 10 ? primary 'Lee, D.' 11 ? primary 'Yang, X.' 12 ? primary 'McIntyre, K.W.' 13 ? primary 'Balimane, P.' 14 ? primary 'Patel, K.' 15 ? primary 'Yang, Z.' 16 ? primary 'Marathe, P.' 17 ? primary 'Kadiyala, P.' 18 ? primary 'Tebben, A.J.' 19 ? primary 'Sheriff, S.' 20 ? primary 'Chang, C.Y.' 21 ? primary 'Ziemba, T.' 22 ? primary 'Zhang, H.' 23 ? primary 'Chen, B.C.' 24 ? primary 'DelMonte, A.J.' 25 ? primary 'Aranibar, N.' 26 ? primary 'McKinnon, M.' 27 ? primary 'Barrish, J.C.' 28 ? primary 'Suchard, S.J.' 29 ? primary 'Murali Dhar, T.G.' 30 ? 1 'Potin, D.' 31 ? 1 'Launay, M.' 32 ? 1 'Monatlik, F.' 33 ? 1 'Malabre, P.' 34 ? 1 'Fabreguettes, M.' 35 ? 1 'Fouquet, A.' 36 ? 1 'Maillet, M.' 37 ? 1 'Nicolai, E.' 38 ? 1 'Dorgeret, L.' 39 ? 1 'Chevallier, F.' 40 ? 1 'Besse, D.' 41 ? 1 'Dufort, M.' 42 ? 1 'Caussade, F.' 43 ? 1 'Ahmad, S.Z.' 44 ? 1 'Stetsko, D.K.' 45 ? 1 'Skala, S.' 46 ? 1 'Davis, P.M.' 47 ? 1 'Balimane, P.' 48 ? 1 'Patel, K.' 49 ? 1 'Yang, Z.' 50 ? 1 'Marathe, P.' 51 ? 1 'Postelneck, J.' 52 ? 1 'Townsend, R.M.' 53 ? 1 'Sheriff, S.' 54 ? 1 'Einspahr, H.' 55 ? 1 'Kish, K.' 56 ? 1 'Malley, M.F.' 57 ? 1 'Gougoutas, J.Z.' 58 ? 1 'Kadiyala, P.' 59 ? 1 'Cheney, D.L.' 60 ? 1 'Tejwani, R.W.' 61 ? 1 'Murphy, D.K.' 62 ? 1 'Mcintyre, K.W.' 63 ? 1 'Yang, X.' 64 ? 1 'Chao, S.' 65 ? 1 'Leith, L.' 66 ? 1 'Xiao, Z.' 67 ? 1 'Mathur, A.' 68 ? 1 'Chen, B.-C.' 69 ? 1 'Wu, D.-R.' 70 ? 1 'Traeger, S.C.' 71 ? 1 'McKinnon, M.' 72 ? 1 'Barrish, J.C.' 73 ? 1 'Robl, J.A.' 74 ? 1 'Iwanowicz, E.J.' 75 ? 1 'Suchard, S.J.' 76 ? 1 'Dhar, T.G.M.' 77 ? # _cell.entry_id 3M6F _cell.length_a 40.600 _cell.length_b 63.600 _cell.length_c 63.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3M6F _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Integrin alpha-L' 20935.980 1 ? ? 'UNP residues 154-332' ? 2 non-polymer syn '6-[(5S,9R)-9-(4-cyanophenyl)-3-(3,5-dichlorophenyl)-1-methyl-2,4-dioxo-1,3,7-triazaspiro[4.4]non-7-yl]pyridine-3-carboxylic acid' 536.366 1 ? ? ? ? 3 non-polymer syn 'NITRATE ION' 62.005 1 ? ? ? ? 4 water nat water 18.015 101 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Leukocyte adhesion glycoprotein LFA-1 alpha chain, LFA-1A, Leukocyte function-associated molecule 1 alpha chain, CD11 antigen-like family member A ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLL LTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASE FVKILDTFEKLKDLFTELQKKIY ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLL LTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASE FVKILDTFEKLKDLFTELQKKIY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ASN n 1 6 VAL n 1 7 ASP n 1 8 LEU n 1 9 VAL n 1 10 PHE n 1 11 LEU n 1 12 PHE n 1 13 ASP n 1 14 GLY n 1 15 SER n 1 16 MET n 1 17 SER n 1 18 LEU n 1 19 GLN n 1 20 PRO n 1 21 ASP n 1 22 GLU n 1 23 PHE n 1 24 GLN n 1 25 LYS n 1 26 ILE n 1 27 LEU n 1 28 ASP n 1 29 PHE n 1 30 MET n 1 31 LYS n 1 32 ASP n 1 33 VAL n 1 34 MET n 1 35 LYS n 1 36 LYS n 1 37 LEU n 1 38 SER n 1 39 ASN n 1 40 THR n 1 41 SER n 1 42 TYR n 1 43 GLN n 1 44 PHE n 1 45 ALA n 1 46 ALA n 1 47 VAL n 1 48 GLN n 1 49 PHE n 1 50 SER n 1 51 THR n 1 52 SER n 1 53 TYR n 1 54 LYS n 1 55 THR n 1 56 GLU n 1 57 PHE n 1 58 ASP n 1 59 PHE n 1 60 SER n 1 61 ASP n 1 62 TYR n 1 63 VAL n 1 64 LYS n 1 65 ARG n 1 66 LYS n 1 67 ASP n 1 68 PRO n 1 69 ASP n 1 70 ALA n 1 71 LEU n 1 72 LEU n 1 73 LYS n 1 74 HIS n 1 75 VAL n 1 76 LYS n 1 77 HIS n 1 78 MET n 1 79 LEU n 1 80 LEU n 1 81 LEU n 1 82 THR n 1 83 ASN n 1 84 THR n 1 85 PHE n 1 86 GLY n 1 87 ALA n 1 88 ILE n 1 89 ASN n 1 90 TYR n 1 91 VAL n 1 92 ALA n 1 93 THR n 1 94 GLU n 1 95 VAL n 1 96 PHE n 1 97 ARG n 1 98 GLU n 1 99 GLU n 1 100 LEU n 1 101 GLY n 1 102 ALA n 1 103 ARG n 1 104 PRO n 1 105 ASP n 1 106 ALA n 1 107 THR n 1 108 LYS n 1 109 VAL n 1 110 LEU n 1 111 ILE n 1 112 ILE n 1 113 ILE n 1 114 THR n 1 115 ASP n 1 116 GLY n 1 117 GLU n 1 118 ALA n 1 119 THR n 1 120 ASP n 1 121 SER n 1 122 GLY n 1 123 ASN n 1 124 ILE n 1 125 ASP n 1 126 ALA n 1 127 ALA n 1 128 LYS n 1 129 ASP n 1 130 ILE n 1 131 ILE n 1 132 ARG n 1 133 TYR n 1 134 ILE n 1 135 ILE n 1 136 GLY n 1 137 ILE n 1 138 GLY n 1 139 LYS n 1 140 HIS n 1 141 PHE n 1 142 GLN n 1 143 THR n 1 144 LYS n 1 145 GLU n 1 146 SER n 1 147 GLN n 1 148 GLU n 1 149 THR n 1 150 LEU n 1 151 HIS n 1 152 LYS n 1 153 PHE n 1 154 ALA n 1 155 SER n 1 156 LYS n 1 157 PRO n 1 158 ALA n 1 159 SER n 1 160 GLU n 1 161 PHE n 1 162 VAL n 1 163 LYS n 1 164 ILE n 1 165 LEU n 1 166 ASP n 1 167 THR n 1 168 PHE n 1 169 GLU n 1 170 LYS n 1 171 LEU n 1 172 LYS n 1 173 ASP n 1 174 LEU n 1 175 PHE n 1 176 THR n 1 177 GLU n 1 178 LEU n 1 179 GLN n 1 180 LYS n 1 181 LYS n 1 182 ILE n 1 183 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ITGAL, CD11A' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'REFOLDED FROM UREA MOL_ID: 2' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET11C _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ITAL_HUMAN _struct_ref.pdbx_db_accession P20701 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNT FGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKI LDTFEKLKDLFTELQKKIY ; _struct_ref.pdbx_align_begin 154 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3M6F _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 183 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P20701 _struct_ref_seq.db_align_beg 154 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 332 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 129 _struct_ref_seq.pdbx_auth_seq_align_end 307 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3M6F GLY A 1 ? UNP P20701 ? ? 'expression tag' 125 1 1 3M6F SER A 2 ? UNP P20701 ? ? 'expression tag' 126 2 1 3M6F HIS A 3 ? UNP P20701 ? ? 'expression tag' 127 3 1 3M6F MET A 4 ? UNP P20701 ? ? 'expression tag' 128 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BJZ non-polymer . '6-[(5S,9R)-9-(4-cyanophenyl)-3-(3,5-dichlorophenyl)-1-methyl-2,4-dioxo-1,3,7-triazaspiro[4.4]non-7-yl]pyridine-3-carboxylic acid' ? 'C26 H19 Cl2 N5 O4' 536.366 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NO3 non-polymer . 'NITRATE ION' ? 'N O3 -1' 62.005 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3M6F _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.95 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 36.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp 100.000000 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 92' _diffrn_detector.pdbx_collection_date 2003-11-12 _diffrn_detector.details 'MICROMAX CONFOCAL' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54178 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E' _diffrn_source.pdbx_wavelength_list 1.54178 _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.entry_id 3M6F _reflns.d_resolution_high 1.850 _reflns.d_resolution_low 50.000 _reflns.number_obs 13552 _reflns.pdbx_Rmerge_I_obs 0.086 _reflns.pdbx_netI_over_sigmaI 23.000 _reflns.pdbx_redundancy 6.800 _reflns.percent_possible_obs 93.300 _reflns.B_iso_Wilson_estimate 15.600 _reflns.observed_criterion_sigma_I 0.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 1.92 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.310 _reflns_shell.meanI_over_sigI_obs 5.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_redundancy 6.60 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.percent_possible_all 76.80 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3M6F _refine.ls_d_res_high 1.850 _refine.ls_d_res_low 28.400 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF 1179626.000 _refine.pdbx_data_cutoff_low_absF 0.000 _refine.ls_percent_reflns_obs 93.100 _refine.ls_number_reflns_obs 13520 _refine.ls_number_reflns_all 13520 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.193 _refine.ls_R_factor_R_work 0.192 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.227 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 685 _refine.ls_R_factor_R_free_error 0.009 _refine.B_iso_mean 17.851 _refine.solvent_model_param_bsol 48.915 _refine.solvent_model_param_ksol 0.406 _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.aniso_B[1][1] -0.960 _refine.aniso_B[2][2] 2.020 _refine.aniso_B[3][3] -1.060 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT MODEL' _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 1LFA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 46.07 _refine.B_iso_min 7.48 _refine.occupancy_max 1.00 _refine.occupancy_min 0.00 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3M6F _refine_analyze.Luzzati_coordinate_error_obs 0.190 _refine_analyze.Luzzati_sigma_a_obs 0.100 _refine_analyze.Luzzati_d_res_low_obs 5.000 _refine_analyze.Luzzati_coordinate_error_free 0.240 _refine_analyze.Luzzati_sigma_a_free 0.180 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1451 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 41 _refine_hist.number_atoms_solvent 101 _refine_hist.number_atoms_total 1593 _refine_hist.d_res_high 1.850 _refine_hist.d_res_low 28.400 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.006 ? ? 'X-RAY DIFFRACTION' ? c_angle_deg ? 1.100 ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? 21.800 ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? 0.680 ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? 1.200 1.500 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 1.710 2.000 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? 1.980 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? 2.710 2.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.850 _refine_ls_shell.d_res_low 1.930 _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.percent_reflns_obs 78.700 _refine_ls_shell.number_reflns_R_work 1339 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.214 _refine_ls_shell.R_factor_R_free 0.270 _refine_ls_shell.percent_reflns_R_free 4.900 _refine_ls_shell.number_reflns_R_free 69 _refine_ls_shell.R_factor_R_free_error 0.033 _refine_ls_shell.number_reflns_all 1408 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine.R_factor_all_no_cutoff 0.193 _pdbx_refine.R_factor_obs_no_cutoff 0.192 _pdbx_refine.free_R_factor_no_cutoff 0.227 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 685 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.100 _pdbx_refine.free_R_error_no_cutoff 0.0090 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 3M6F _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM ION.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM COMBINED.TOP 'X-RAY DIFFRACTION' 5 BJZ.PAR BJZ.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 3M6F _struct.title ;CD11A I-domain complexed with 6-((5S,9R)-9-(4-CYANOPHENYL)-3-(3,5-DICHLOROPHENYL)-1-METHYL-2,4-DIOXO-1,3,7- TRIAZASPIRO[4.4]NON-7-YL)NICOTINIC ACID ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3M6F _struct_keywords.text ;LFA1, INHIBITOR, Alternative splicing, Calcium, Cell adhesion, Disulfide bond, Glycoprotein, Integrin, Magnesium, Membrane, Polymorphism, Receptor, Transmembrane ; _struct_keywords.pdbx_keywords 'CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 19 ? LEU A 37 ? GLN A 143 LEU A 161 1 ? 19 HELX_P HELX_P2 2 ASP A 58 ? LYS A 66 ? ASP A 182 LYS A 190 1 ? 9 HELX_P HELX_P3 3 ASP A 67 ? LEU A 72 ? ASP A 191 LEU A 196 1 ? 6 HELX_P HELX_P4 4 ASN A 83 ? VAL A 95 ? ASN A 207 VAL A 219 1 ? 13 HELX_P HELX_P5 5 ARG A 97 ? GLY A 101 ? ARG A 221 GLY A 225 5 ? 5 HELX_P HELX_P6 6 ILE A 124 ? LYS A 128 ? ILE A 248 LYS A 252 5 ? 5 HELX_P HELX_P7 7 LYS A 139 ? GLN A 142 ? LYS A 263 GLN A 266 5 ? 4 HELX_P HELX_P8 8 THR A 143 ? GLU A 148 ? THR A 267 GLU A 272 1 ? 6 HELX_P HELX_P9 9 THR A 149 ? ALA A 154 ? THR A 273 ALA A 278 5 ? 6 HELX_P HELX_P10 10 PRO A 157 ? PHE A 161 ? PRO A 281 PHE A 285 1 ? 5 HELX_P HELX_P11 11 GLU A 169 ? LYS A 181 ? GLU A 293 LYS A 305 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 156 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 280 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 157 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 281 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.39 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 53 ? PHE A 57 ? TYR A 177 PHE A 181 A 2 TYR A 42 ? PHE A 49 ? TYR A 166 PHE A 173 A 3 VAL A 6 ? ASP A 13 ? VAL A 130 ASP A 137 A 4 THR A 107 ? THR A 114 ? THR A 231 THR A 238 A 5 ILE A 131 ? ILE A 137 ? ILE A 255 ILE A 261 A 6 VAL A 162 ? LEU A 165 ? VAL A 286 LEU A 289 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 54 ? O LYS A 178 N GLN A 48 ? N GLN A 172 A 2 3 O GLN A 43 ? O GLN A 167 N LEU A 8 ? N LEU A 132 A 3 4 N VAL A 9 ? N VAL A 133 O ILE A 111 ? O ILE A 235 A 4 5 N ILE A 112 ? N ILE A 236 O ILE A 135 ? O ILE A 259 A 5 6 N GLY A 136 ? N GLY A 260 O LYS A 163 ? O LYS A 287 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BJZ 1 ? 10 'BINDING SITE FOR RESIDUE BJZ A 1' AC2 Software A NO3 401 ? 5 'BINDING SITE FOR RESIDUE NO3 A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 TYR A 42 ? TYR A 166 . ? 1_555 ? 2 AC1 10 THR A 107 ? THR A 231 . ? 1_555 ? 3 AC1 10 ILE A 111 ? ILE A 235 . ? 1_555 ? 4 AC1 10 ILE A 131 ? ILE A 255 . ? 1_555 ? 5 AC1 10 TYR A 133 ? TYR A 257 . ? 1_555 ? 6 AC1 10 ILE A 135 ? ILE A 259 . ? 1_555 ? 7 AC1 10 LYS A 163 ? LYS A 287 . ? 1_555 ? 8 AC1 10 LEU A 178 ? LEU A 302 . ? 1_555 ? 9 AC1 10 HOH D . ? HOH A 408 . ? 1_555 ? 10 AC1 10 HOH D . ? HOH A 447 . ? 1_555 ? 11 AC2 5 LYS A 152 ? LYS A 276 . ? 1_555 ? 12 AC2 5 LYS A 156 ? LYS A 280 . ? 1_555 ? 13 AC2 5 HOH D . ? HOH A 444 . ? 4_456 ? 14 AC2 5 HOH D . ? HOH A 460 . ? 1_555 ? 15 AC2 5 HOH D . ? HOH A 491 . ? 1_555 ? # _database_PDB_matrix.entry_id 3M6F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3M6F _atom_sites.fract_transf_matrix[1][1] 0.024631 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015723 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015848 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 125 ? ? ? A . n A 1 2 SER 2 126 ? ? ? A . n A 1 3 HIS 3 127 ? ? ? A . n A 1 4 MET 4 128 128 MET MET A . n A 1 5 ASN 5 129 129 ASN ASN A . n A 1 6 VAL 6 130 130 VAL VAL A . n A 1 7 ASP 7 131 131 ASP ASP A . n A 1 8 LEU 8 132 132 LEU LEU A . n A 1 9 VAL 9 133 133 VAL VAL A . n A 1 10 PHE 10 134 134 PHE PHE A . n A 1 11 LEU 11 135 135 LEU LEU A . n A 1 12 PHE 12 136 136 PHE PHE A . n A 1 13 ASP 13 137 137 ASP ASP A . n A 1 14 GLY 14 138 138 GLY GLY A . n A 1 15 SER 15 139 139 SER SER A . n A 1 16 MET 16 140 140 MET MET A . n A 1 17 SER 17 141 141 SER SER A . n A 1 18 LEU 18 142 142 LEU LEU A . n A 1 19 GLN 19 143 143 GLN GLN A . n A 1 20 PRO 20 144 144 PRO PRO A . n A 1 21 ASP 21 145 145 ASP ASP A . n A 1 22 GLU 22 146 146 GLU GLU A . n A 1 23 PHE 23 147 147 PHE PHE A . n A 1 24 GLN 24 148 148 GLN GLN A . n A 1 25 LYS 25 149 149 LYS LYS A . n A 1 26 ILE 26 150 150 ILE ILE A . n A 1 27 LEU 27 151 151 LEU LEU A . n A 1 28 ASP 28 152 152 ASP ASP A . n A 1 29 PHE 29 153 153 PHE PHE A . n A 1 30 MET 30 154 154 MET MET A . n A 1 31 LYS 31 155 155 LYS LYS A . n A 1 32 ASP 32 156 156 ASP ASP A . n A 1 33 VAL 33 157 157 VAL VAL A . n A 1 34 MET 34 158 158 MET MET A . n A 1 35 LYS 35 159 159 LYS LYS A . n A 1 36 LYS 36 160 160 LYS LYS A . n A 1 37 LEU 37 161 161 LEU LEU A . n A 1 38 SER 38 162 162 SER SER A . n A 1 39 ASN 39 163 163 ASN ASN A . n A 1 40 THR 40 164 164 THR THR A . n A 1 41 SER 41 165 165 SER SER A . n A 1 42 TYR 42 166 166 TYR TYR A . n A 1 43 GLN 43 167 167 GLN GLN A . n A 1 44 PHE 44 168 168 PHE PHE A . n A 1 45 ALA 45 169 169 ALA ALA A . n A 1 46 ALA 46 170 170 ALA ALA A . n A 1 47 VAL 47 171 171 VAL VAL A . n A 1 48 GLN 48 172 172 GLN GLN A . n A 1 49 PHE 49 173 173 PHE PHE A . n A 1 50 SER 50 174 174 SER SER A . n A 1 51 THR 51 175 175 THR THR A . n A 1 52 SER 52 176 176 SER SER A . n A 1 53 TYR 53 177 177 TYR TYR A . n A 1 54 LYS 54 178 178 LYS LYS A . n A 1 55 THR 55 179 179 THR THR A . n A 1 56 GLU 56 180 180 GLU GLU A . n A 1 57 PHE 57 181 181 PHE PHE A . n A 1 58 ASP 58 182 182 ASP ASP A . n A 1 59 PHE 59 183 183 PHE PHE A . n A 1 60 SER 60 184 184 SER SER A . n A 1 61 ASP 61 185 185 ASP ASP A . n A 1 62 TYR 62 186 186 TYR TYR A . n A 1 63 VAL 63 187 187 VAL VAL A . n A 1 64 LYS 64 188 188 LYS LYS A . n A 1 65 ARG 65 189 189 ARG ARG A . n A 1 66 LYS 66 190 190 LYS LYS A . n A 1 67 ASP 67 191 191 ASP ASP A . n A 1 68 PRO 68 192 192 PRO PRO A . n A 1 69 ASP 69 193 193 ASP ASP A . n A 1 70 ALA 70 194 194 ALA ALA A . n A 1 71 LEU 71 195 195 LEU LEU A . n A 1 72 LEU 72 196 196 LEU LEU A . n A 1 73 LYS 73 197 197 LYS LYS A . n A 1 74 HIS 74 198 198 HIS HIS A . n A 1 75 VAL 75 199 199 VAL VAL A . n A 1 76 LYS 76 200 200 LYS LYS A . n A 1 77 HIS 77 201 201 HIS HIS A . n A 1 78 MET 78 202 202 MET MET A . n A 1 79 LEU 79 203 203 LEU LEU A . n A 1 80 LEU 80 204 204 LEU LEU A . n A 1 81 LEU 81 205 205 LEU LEU A . n A 1 82 THR 82 206 206 THR THR A . n A 1 83 ASN 83 207 207 ASN ASN A . n A 1 84 THR 84 208 208 THR THR A . n A 1 85 PHE 85 209 209 PHE PHE A . n A 1 86 GLY 86 210 210 GLY GLY A . n A 1 87 ALA 87 211 211 ALA ALA A . n A 1 88 ILE 88 212 212 ILE ILE A . n A 1 89 ASN 89 213 213 ASN ASN A . n A 1 90 TYR 90 214 214 TYR TYR A . n A 1 91 VAL 91 215 215 VAL VAL A . n A 1 92 ALA 92 216 216 ALA ALA A . n A 1 93 THR 93 217 217 THR THR A . n A 1 94 GLU 94 218 218 GLU GLU A . n A 1 95 VAL 95 219 219 VAL VAL A . n A 1 96 PHE 96 220 220 PHE PHE A . n A 1 97 ARG 97 221 221 ARG ARG A . n A 1 98 GLU 98 222 222 GLU GLU A . n A 1 99 GLU 99 223 223 GLU GLU A . n A 1 100 LEU 100 224 224 LEU LEU A . n A 1 101 GLY 101 225 225 GLY GLY A . n A 1 102 ALA 102 226 226 ALA ALA A . n A 1 103 ARG 103 227 227 ARG ARG A . n A 1 104 PRO 104 228 228 PRO PRO A . n A 1 105 ASP 105 229 229 ASP ASP A . n A 1 106 ALA 106 230 230 ALA ALA A . n A 1 107 THR 107 231 231 THR THR A . n A 1 108 LYS 108 232 232 LYS LYS A . n A 1 109 VAL 109 233 233 VAL VAL A . n A 1 110 LEU 110 234 234 LEU LEU A . n A 1 111 ILE 111 235 235 ILE ILE A . n A 1 112 ILE 112 236 236 ILE ILE A . n A 1 113 ILE 113 237 237 ILE ILE A . n A 1 114 THR 114 238 238 THR THR A . n A 1 115 ASP 115 239 239 ASP ASP A . n A 1 116 GLY 116 240 240 GLY GLY A . n A 1 117 GLU 117 241 241 GLU GLU A . n A 1 118 ALA 118 242 242 ALA ALA A . n A 1 119 THR 119 243 243 THR THR A . n A 1 120 ASP 120 244 244 ASP ASP A . n A 1 121 SER 121 245 245 SER SER A . n A 1 122 GLY 122 246 246 GLY GLY A . n A 1 123 ASN 123 247 247 ASN ASN A . n A 1 124 ILE 124 248 248 ILE ILE A . n A 1 125 ASP 125 249 249 ASP ASP A . n A 1 126 ALA 126 250 250 ALA ALA A . n A 1 127 ALA 127 251 251 ALA ALA A . n A 1 128 LYS 128 252 252 LYS LYS A . n A 1 129 ASP 129 253 253 ASP ASP A . n A 1 130 ILE 130 254 254 ILE ILE A . n A 1 131 ILE 131 255 255 ILE ILE A . n A 1 132 ARG 132 256 256 ARG ARG A . n A 1 133 TYR 133 257 257 TYR TYR A . n A 1 134 ILE 134 258 258 ILE ILE A . n A 1 135 ILE 135 259 259 ILE ILE A . n A 1 136 GLY 136 260 260 GLY GLY A . n A 1 137 ILE 137 261 261 ILE ILE A . n A 1 138 GLY 138 262 262 GLY GLY A . n A 1 139 LYS 139 263 263 LYS LYS A . n A 1 140 HIS 140 264 264 HIS HIS A . n A 1 141 PHE 141 265 265 PHE PHE A . n A 1 142 GLN 142 266 266 GLN GLN A . n A 1 143 THR 143 267 267 THR THR A . n A 1 144 LYS 144 268 268 LYS LYS A . n A 1 145 GLU 145 269 269 GLU GLU A . n A 1 146 SER 146 270 270 SER SER A . n A 1 147 GLN 147 271 271 GLN GLN A . n A 1 148 GLU 148 272 272 GLU GLU A . n A 1 149 THR 149 273 273 THR THR A . n A 1 150 LEU 150 274 274 LEU LEU A . n A 1 151 HIS 151 275 275 HIS HIS A . n A 1 152 LYS 152 276 276 LYS LYS A . n A 1 153 PHE 153 277 277 PHE PHE A . n A 1 154 ALA 154 278 278 ALA ALA A . n A 1 155 SER 155 279 279 SER SER A . n A 1 156 LYS 156 280 280 LYS LYS A . n A 1 157 PRO 157 281 281 PRO PRO A . n A 1 158 ALA 158 282 282 ALA ALA A . n A 1 159 SER 159 283 283 SER SER A . n A 1 160 GLU 160 284 284 GLU GLU A . n A 1 161 PHE 161 285 285 PHE PHE A . n A 1 162 VAL 162 286 286 VAL VAL A . n A 1 163 LYS 163 287 287 LYS LYS A . n A 1 164 ILE 164 288 288 ILE ILE A . n A 1 165 LEU 165 289 289 LEU LEU A . n A 1 166 ASP 166 290 290 ASP ASP A . n A 1 167 THR 167 291 291 THR THR A . n A 1 168 PHE 168 292 292 PHE PHE A . n A 1 169 GLU 169 293 293 GLU GLU A . n A 1 170 LYS 170 294 294 LYS LYS A . n A 1 171 LEU 171 295 295 LEU LEU A . n A 1 172 LYS 172 296 296 LYS LYS A . n A 1 173 ASP 173 297 297 ASP ASP A . n A 1 174 LEU 174 298 298 LEU LEU A . n A 1 175 PHE 175 299 299 PHE PHE A . n A 1 176 THR 176 300 300 THR THR A . n A 1 177 GLU 177 301 301 GLU GLU A . n A 1 178 LEU 178 302 302 LEU LEU A . n A 1 179 GLN 179 303 303 GLN GLN A . n A 1 180 LYS 180 304 304 LYS LYS A . n A 1 181 LYS 181 305 305 LYS LYS A . n A 1 182 ILE 182 306 306 ILE ILE A . n A 1 183 TYR 183 307 307 TYR TYR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BJZ 1 1 1 BJZ BJZ A . C 3 NO3 1 401 401 NO3 NO3 A . D 4 HOH 1 402 402 HOH HOH A . D 4 HOH 2 403 403 HOH HOH A . D 4 HOH 3 404 404 HOH HOH A . D 4 HOH 4 405 405 HOH HOH A . D 4 HOH 5 406 406 HOH HOH A . D 4 HOH 6 407 407 HOH HOH A . D 4 HOH 7 408 408 HOH HOH A . D 4 HOH 8 409 409 HOH HOH A . D 4 HOH 9 410 410 HOH HOH A . D 4 HOH 10 411 411 HOH HOH A . D 4 HOH 11 412 412 HOH HOH A . D 4 HOH 12 413 413 HOH HOH A . D 4 HOH 13 414 414 HOH HOH A . D 4 HOH 14 415 415 HOH HOH A . D 4 HOH 15 416 416 HOH HOH A . D 4 HOH 16 417 417 HOH HOH A . D 4 HOH 17 418 418 HOH HOH A . D 4 HOH 18 419 419 HOH HOH A . D 4 HOH 19 420 420 HOH HOH A . D 4 HOH 20 421 421 HOH HOH A . D 4 HOH 21 422 422 HOH HOH A . D 4 HOH 22 423 423 HOH HOH A . D 4 HOH 23 424 424 HOH HOH A . D 4 HOH 24 425 425 HOH HOH A . D 4 HOH 25 426 426 HOH HOH A . D 4 HOH 26 427 427 HOH HOH A . D 4 HOH 27 428 428 HOH HOH A . D 4 HOH 28 429 429 HOH HOH A . D 4 HOH 29 430 430 HOH HOH A . D 4 HOH 30 431 431 HOH HOH A . D 4 HOH 31 432 432 HOH HOH A . D 4 HOH 32 433 433 HOH HOH A . D 4 HOH 33 434 434 HOH HOH A . D 4 HOH 34 435 435 HOH HOH A . D 4 HOH 35 436 436 HOH HOH A . D 4 HOH 36 437 437 HOH HOH A . D 4 HOH 37 438 438 HOH HOH A . D 4 HOH 38 439 439 HOH HOH A . D 4 HOH 39 440 440 HOH HOH A . D 4 HOH 40 441 441 HOH HOH A . D 4 HOH 41 442 442 HOH HOH A . D 4 HOH 42 443 443 HOH HOH A . D 4 HOH 43 444 444 HOH HOH A . D 4 HOH 44 445 445 HOH HOH A . D 4 HOH 45 446 446 HOH HOH A . D 4 HOH 46 447 447 HOH HOH A . D 4 HOH 47 448 448 HOH HOH A . D 4 HOH 48 449 449 HOH HOH A . D 4 HOH 49 450 450 HOH HOH A . D 4 HOH 50 451 451 HOH HOH A . D 4 HOH 51 452 452 HOH HOH A . D 4 HOH 52 453 453 HOH HOH A . D 4 HOH 53 454 454 HOH HOH A . D 4 HOH 54 455 455 HOH HOH A . D 4 HOH 55 456 456 HOH HOH A . D 4 HOH 56 457 457 HOH HOH A . D 4 HOH 57 458 458 HOH HOH A . D 4 HOH 58 459 459 HOH HOH A . D 4 HOH 59 460 460 HOH HOH A . D 4 HOH 60 461 461 HOH HOH A . D 4 HOH 61 462 462 HOH HOH A . D 4 HOH 62 463 463 HOH HOH A . D 4 HOH 63 464 464 HOH HOH A . D 4 HOH 64 465 465 HOH HOH A . D 4 HOH 65 466 466 HOH HOH A . D 4 HOH 66 467 467 HOH HOH A . D 4 HOH 67 468 468 HOH HOH A . D 4 HOH 68 469 469 HOH HOH A . D 4 HOH 69 470 470 HOH HOH A . D 4 HOH 70 471 471 HOH HOH A . D 4 HOH 71 472 472 HOH HOH A . D 4 HOH 72 473 473 HOH HOH A . D 4 HOH 73 474 474 HOH HOH A . D 4 HOH 74 475 475 HOH HOH A . D 4 HOH 75 476 476 HOH HOH A . D 4 HOH 76 477 477 HOH HOH A . D 4 HOH 77 478 478 HOH HOH A . D 4 HOH 78 479 479 HOH HOH A . D 4 HOH 79 480 480 HOH HOH A . D 4 HOH 80 481 481 HOH HOH A . D 4 HOH 81 482 482 HOH HOH A . D 4 HOH 82 483 483 HOH HOH A . D 4 HOH 83 484 484 HOH HOH A . D 4 HOH 84 485 485 HOH HOH A . D 4 HOH 85 486 486 HOH HOH A . D 4 HOH 86 487 487 HOH HOH A . D 4 HOH 87 488 488 HOH HOH A . D 4 HOH 88 489 489 HOH HOH A . D 4 HOH 89 490 490 HOH HOH A . D 4 HOH 90 491 491 HOH HOH A . D 4 HOH 91 492 492 HOH HOH A . D 4 HOH 92 493 493 HOH HOH A . D 4 HOH 93 494 494 HOH HOH A . D 4 HOH 94 495 495 HOH HOH A . D 4 HOH 95 496 496 HOH HOH A . D 4 HOH 96 497 497 HOH HOH A . D 4 HOH 97 498 498 HOH HOH A . D 4 HOH 98 499 499 HOH HOH A . D 4 HOH 99 500 500 HOH HOH A . D 4 HOH 100 501 501 HOH HOH A . D 4 HOH 101 502 502 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-05-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-04-04 4 'Structure model' 1 3 2018-04-11 5 'Structure model' 1 4 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Data collection' 4 4 'Structure model' 'Data collection' 5 5 'Structure model' Advisory 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' diffrn_source 2 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 3 4 'Structure model' diffrn_source 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 7 5 'Structure model' pdbx_initial_refinement_model 8 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 9 5 'Structure model' struct_ref_seq_dif 10 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_diffrn_source.type' 2 4 'Structure model' '_diffrn_source.source' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_ref_seq_dif.details' 6 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 2 PDB_EXTRACT 3.100 'Jan. 22, 2010' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 DENZO . ? ? ? ? 'data reduction' ? ? ? 4 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 5 AMoRE . ? ? ? ? phasing ? ? ? 6 CNX 2005 ? ? ? ? refinement ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 164 ? ? -121.79 -169.19 2 1 SER A 174 ? ? -147.80 -105.54 3 1 LEU A 204 ? ? -124.39 -131.13 4 1 ASP A 244 ? ? -103.53 -159.63 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 128 ? CB ? A MET 4 CB 2 1 Y 1 A MET 128 ? CG ? A MET 4 CG 3 1 Y 1 A MET 128 ? SD ? A MET 4 SD 4 1 Y 1 A MET 128 ? CE ? A MET 4 CE 5 1 Y 0 A ASP 145 ? CG ? A ASP 21 CG 6 1 Y 0 A ASP 145 ? OD1 ? A ASP 21 OD1 7 1 Y 0 A ASP 145 ? OD2 ? A ASP 21 OD2 8 1 Y 0 A LYS 268 ? CD ? A LYS 144 CD 9 1 Y 0 A LYS 268 ? CE ? A LYS 144 CE 10 1 Y 0 A LYS 268 ? NZ ? A LYS 144 NZ 11 1 Y 0 A ASP 290 ? CG ? A ASP 166 CG 12 1 Y 0 A ASP 290 ? OD1 ? A ASP 166 OD1 13 1 Y 0 A ASP 290 ? OD2 ? A ASP 166 OD2 14 1 Y 0 A GLU 301 ? CD ? A GLU 177 CD 15 1 Y 0 A GLU 301 ? OE1 ? A GLU 177 OE1 16 1 Y 0 A GLU 301 ? OE2 ? A GLU 177 OE2 17 1 Y 0 A GLN 303 ? CD ? A GLN 179 CD 18 1 Y 0 A GLN 303 ? OE1 ? A GLN 179 OE1 19 1 Y 0 A GLN 303 ? NE2 ? A GLN 179 NE2 20 1 Y 0 A TYR 307 ? OXT ? A TYR 183 OXT # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 125 ? A GLY 1 2 1 Y 1 A SER 126 ? A SER 2 3 1 Y 1 A HIS 127 ? A HIS 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BJZ C1 C Y N 74 BJZ C2 C Y N 75 BJZ C4 C Y N 76 BJZ C5 C Y N 77 BJZ C7 C Y N 78 BJZ C8 C Y N 79 BJZ CL10 CL N N 80 BJZ N11 N N N 81 BJZ C12 C N N 82 BJZ N13 N N N 83 BJZ C14 C N S 84 BJZ C15 C N N 85 BJZ O16 O N N 86 BJZ C17 C N N 87 BJZ N20 N N N 88 BJZ C21 C N N 89 BJZ C24 C N R 90 BJZ C26 C Y N 91 BJZ C27 C Y N 92 BJZ C29 C Y N 93 BJZ C31 C Y N 94 BJZ C32 C Y N 95 BJZ C34 C Y N 96 BJZ C36 C N N 97 BJZ N37 N N N 98 BJZ C38 C Y N 99 BJZ N39 N Y N 100 BJZ C40 C Y N 101 BJZ C42 C Y N 102 BJZ C43 C Y N 103 BJZ C45 C Y N 104 BJZ C47 C N N 105 BJZ O48 O N N 106 BJZ O49 O N N 107 BJZ C51 C N N 108 BJZ O55 O N N 109 BJZ CL56 CL N N 110 BJZ H2 H N N 111 BJZ H5 H N N 112 BJZ H8 H N N 113 BJZ H17 H N N 114 BJZ H17A H N N 115 BJZ H21 H N N 116 BJZ H21A H N N 117 BJZ H24 H N N 118 BJZ H27 H N N 119 BJZ H29 H N N 120 BJZ H32 H N N 121 BJZ H34 H N N 122 BJZ H40 H N N 123 BJZ H43 H N N 124 BJZ H45 H N N 125 BJZ HO49 H N N 126 BJZ H51 H N N 127 BJZ H51A H N N 128 BJZ H51B H N N 129 GLN N N N N 130 GLN CA C N S 131 GLN C C N N 132 GLN O O N N 133 GLN CB C N N 134 GLN CG C N N 135 GLN CD C N N 136 GLN OE1 O N N 137 GLN NE2 N N N 138 GLN OXT O N N 139 GLN H H N N 140 GLN H2 H N N 141 GLN HA H N N 142 GLN HB2 H N N 143 GLN HB3 H N N 144 GLN HG2 H N N 145 GLN HG3 H N N 146 GLN HE21 H N N 147 GLN HE22 H N N 148 GLN HXT H N N 149 GLU N N N N 150 GLU CA C N S 151 GLU C C N N 152 GLU O O N N 153 GLU CB C N N 154 GLU CG C N N 155 GLU CD C N N 156 GLU OE1 O N N 157 GLU OE2 O N N 158 GLU OXT O N N 159 GLU H H N N 160 GLU H2 H N N 161 GLU HA H N N 162 GLU HB2 H N N 163 GLU HB3 H N N 164 GLU HG2 H N N 165 GLU HG3 H N N 166 GLU HE2 H N N 167 GLU HXT H N N 168 GLY N N N N 169 GLY CA C N N 170 GLY C C N N 171 GLY O O N N 172 GLY OXT O N N 173 GLY H H N N 174 GLY H2 H N N 175 GLY HA2 H N N 176 GLY HA3 H N N 177 GLY HXT H N N 178 HIS N N N N 179 HIS CA C N S 180 HIS C C N N 181 HIS O O N N 182 HIS CB C N N 183 HIS CG C Y N 184 HIS ND1 N Y N 185 HIS CD2 C Y N 186 HIS CE1 C Y N 187 HIS NE2 N Y N 188 HIS OXT O N N 189 HIS H H N N 190 HIS H2 H N N 191 HIS HA H N N 192 HIS HB2 H N N 193 HIS HB3 H N N 194 HIS HD1 H N N 195 HIS HD2 H N N 196 HIS HE1 H N N 197 HIS HE2 H N N 198 HIS HXT H N N 199 HOH O O N N 200 HOH H1 H N N 201 HOH H2 H N N 202 ILE N N N N 203 ILE CA C N S 204 ILE C C N N 205 ILE O O N N 206 ILE CB C N S 207 ILE CG1 C N N 208 ILE CG2 C N N 209 ILE CD1 C N N 210 ILE OXT O N N 211 ILE H H N N 212 ILE H2 H N N 213 ILE HA H N N 214 ILE HB H N N 215 ILE HG12 H N N 216 ILE HG13 H N N 217 ILE HG21 H N N 218 ILE HG22 H N N 219 ILE HG23 H N N 220 ILE HD11 H N N 221 ILE HD12 H N N 222 ILE HD13 H N N 223 ILE HXT H N N 224 LEU N N N N 225 LEU CA C N S 226 LEU C C N N 227 LEU O O N N 228 LEU CB C N N 229 LEU CG C N N 230 LEU CD1 C N N 231 LEU CD2 C N N 232 LEU OXT O N N 233 LEU H H N N 234 LEU H2 H N N 235 LEU HA H N N 236 LEU HB2 H N N 237 LEU HB3 H N N 238 LEU HG H N N 239 LEU HD11 H N N 240 LEU HD12 H N N 241 LEU HD13 H N N 242 LEU HD21 H N N 243 LEU HD22 H N N 244 LEU HD23 H N N 245 LEU HXT H N N 246 LYS N N N N 247 LYS CA C N S 248 LYS C C N N 249 LYS O O N N 250 LYS CB C N N 251 LYS CG C N N 252 LYS CD C N N 253 LYS CE C N N 254 LYS NZ N N N 255 LYS OXT O N N 256 LYS H H N N 257 LYS H2 H N N 258 LYS HA H N N 259 LYS HB2 H N N 260 LYS HB3 H N N 261 LYS HG2 H N N 262 LYS HG3 H N N 263 LYS HD2 H N N 264 LYS HD3 H N N 265 LYS HE2 H N N 266 LYS HE3 H N N 267 LYS HZ1 H N N 268 LYS HZ2 H N N 269 LYS HZ3 H N N 270 LYS HXT H N N 271 MET N N N N 272 MET CA C N S 273 MET C C N N 274 MET O O N N 275 MET CB C N N 276 MET CG C N N 277 MET SD S N N 278 MET CE C N N 279 MET OXT O N N 280 MET H H N N 281 MET H2 H N N 282 MET HA H N N 283 MET HB2 H N N 284 MET HB3 H N N 285 MET HG2 H N N 286 MET HG3 H N N 287 MET HE1 H N N 288 MET HE2 H N N 289 MET HE3 H N N 290 MET HXT H N N 291 NO3 N N N N 292 NO3 O1 O N N 293 NO3 O2 O N N 294 NO3 O3 O N N 295 PHE N N N N 296 PHE CA C N S 297 PHE C C N N 298 PHE O O N N 299 PHE CB C N N 300 PHE CG C Y N 301 PHE CD1 C Y N 302 PHE CD2 C Y N 303 PHE CE1 C Y N 304 PHE CE2 C Y N 305 PHE CZ C Y N 306 PHE OXT O N N 307 PHE H H N N 308 PHE H2 H N N 309 PHE HA H N N 310 PHE HB2 H N N 311 PHE HB3 H N N 312 PHE HD1 H N N 313 PHE HD2 H N N 314 PHE HE1 H N N 315 PHE HE2 H N N 316 PHE HZ H N N 317 PHE HXT H N N 318 PRO N N N N 319 PRO CA C N S 320 PRO C C N N 321 PRO O O N N 322 PRO CB C N N 323 PRO CG C N N 324 PRO CD C N N 325 PRO OXT O N N 326 PRO H H N N 327 PRO HA H N N 328 PRO HB2 H N N 329 PRO HB3 H N N 330 PRO HG2 H N N 331 PRO HG3 H N N 332 PRO HD2 H N N 333 PRO HD3 H N N 334 PRO HXT H N N 335 SER N N N N 336 SER CA C N S 337 SER C C N N 338 SER O O N N 339 SER CB C N N 340 SER OG O N N 341 SER OXT O N N 342 SER H H N N 343 SER H2 H N N 344 SER HA H N N 345 SER HB2 H N N 346 SER HB3 H N N 347 SER HG H N N 348 SER HXT H N N 349 THR N N N N 350 THR CA C N S 351 THR C C N N 352 THR O O N N 353 THR CB C N R 354 THR OG1 O N N 355 THR CG2 C N N 356 THR OXT O N N 357 THR H H N N 358 THR H2 H N N 359 THR HA H N N 360 THR HB H N N 361 THR HG1 H N N 362 THR HG21 H N N 363 THR HG22 H N N 364 THR HG23 H N N 365 THR HXT H N N 366 TYR N N N N 367 TYR CA C N S 368 TYR C C N N 369 TYR O O N N 370 TYR CB C N N 371 TYR CG C Y N 372 TYR CD1 C Y N 373 TYR CD2 C Y N 374 TYR CE1 C Y N 375 TYR CE2 C Y N 376 TYR CZ C Y N 377 TYR OH O N N 378 TYR OXT O N N 379 TYR H H N N 380 TYR H2 H N N 381 TYR HA H N N 382 TYR HB2 H N N 383 TYR HB3 H N N 384 TYR HD1 H N N 385 TYR HD2 H N N 386 TYR HE1 H N N 387 TYR HE2 H N N 388 TYR HH H N N 389 TYR HXT H N N 390 VAL N N N N 391 VAL CA C N S 392 VAL C C N N 393 VAL O O N N 394 VAL CB C N N 395 VAL CG1 C N N 396 VAL CG2 C N N 397 VAL OXT O N N 398 VAL H H N N 399 VAL H2 H N N 400 VAL HA H N N 401 VAL HB H N N 402 VAL HG11 H N N 403 VAL HG12 H N N 404 VAL HG13 H N N 405 VAL HG21 H N N 406 VAL HG22 H N N 407 VAL HG23 H N N 408 VAL HXT H N N 409 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BJZ CL56 C1 sing N N 70 BJZ C2 C1 doub Y N 71 BJZ C1 C8 sing Y N 72 BJZ C2 C4 sing Y N 73 BJZ C2 H2 sing N N 74 BJZ N11 C4 sing N N 75 BJZ C4 C5 doub Y N 76 BJZ C5 C7 sing Y N 77 BJZ C5 H5 sing N N 78 BJZ C8 C7 doub Y N 79 BJZ C7 CL10 sing N N 80 BJZ C8 H8 sing N N 81 BJZ C15 N11 sing N N 82 BJZ N11 C12 sing N N 83 BJZ N13 C12 sing N N 84 BJZ C12 O55 doub N N 85 BJZ C14 N13 sing N N 86 BJZ N13 C51 sing N N 87 BJZ C24 C14 sing N N 88 BJZ C17 C14 sing N N 89 BJZ C14 C15 sing N N 90 BJZ O16 C15 doub N N 91 BJZ N20 C17 sing N N 92 BJZ C17 H17 sing N N 93 BJZ C17 H17A sing N N 94 BJZ C38 N20 sing N N 95 BJZ C21 N20 sing N N 96 BJZ C21 C24 sing N N 97 BJZ C21 H21 sing N N 98 BJZ C21 H21A sing N N 99 BJZ C26 C24 sing N N 100 BJZ C24 H24 sing N N 101 BJZ C34 C26 doub Y N 102 BJZ C26 C27 sing Y N 103 BJZ C27 C29 doub Y N 104 BJZ C27 H27 sing N N 105 BJZ C31 C29 sing Y N 106 BJZ C29 H29 sing N N 107 BJZ C32 C31 doub Y N 108 BJZ C31 C36 sing N N 109 BJZ C34 C32 sing Y N 110 BJZ C32 H32 sing N N 111 BJZ C34 H34 sing N N 112 BJZ C36 N37 trip N N 113 BJZ C45 C38 doub Y N 114 BJZ C38 N39 sing Y N 115 BJZ C40 N39 doub Y N 116 BJZ C42 C40 sing Y N 117 BJZ C40 H40 sing N N 118 BJZ C47 C42 sing N N 119 BJZ C43 C42 doub Y N 120 BJZ C43 C45 sing Y N 121 BJZ C43 H43 sing N N 122 BJZ C45 H45 sing N N 123 BJZ O48 C47 doub N N 124 BJZ C47 O49 sing N N 125 BJZ O49 HO49 sing N N 126 BJZ C51 H51 sing N N 127 BJZ C51 H51A sing N N 128 BJZ C51 H51B sing N N 129 GLN N CA sing N N 130 GLN N H sing N N 131 GLN N H2 sing N N 132 GLN CA C sing N N 133 GLN CA CB sing N N 134 GLN CA HA sing N N 135 GLN C O doub N N 136 GLN C OXT sing N N 137 GLN CB CG sing N N 138 GLN CB HB2 sing N N 139 GLN CB HB3 sing N N 140 GLN CG CD sing N N 141 GLN CG HG2 sing N N 142 GLN CG HG3 sing N N 143 GLN CD OE1 doub N N 144 GLN CD NE2 sing N N 145 GLN NE2 HE21 sing N N 146 GLN NE2 HE22 sing N N 147 GLN OXT HXT sing N N 148 GLU N CA sing N N 149 GLU N H sing N N 150 GLU N H2 sing N N 151 GLU CA C sing N N 152 GLU CA CB sing N N 153 GLU CA HA sing N N 154 GLU C O doub N N 155 GLU C OXT sing N N 156 GLU CB CG sing N N 157 GLU CB HB2 sing N N 158 GLU CB HB3 sing N N 159 GLU CG CD sing N N 160 GLU CG HG2 sing N N 161 GLU CG HG3 sing N N 162 GLU CD OE1 doub N N 163 GLU CD OE2 sing N N 164 GLU OE2 HE2 sing N N 165 GLU OXT HXT sing N N 166 GLY N CA sing N N 167 GLY N H sing N N 168 GLY N H2 sing N N 169 GLY CA C sing N N 170 GLY CA HA2 sing N N 171 GLY CA HA3 sing N N 172 GLY C O doub N N 173 GLY C OXT sing N N 174 GLY OXT HXT sing N N 175 HIS N CA sing N N 176 HIS N H sing N N 177 HIS N H2 sing N N 178 HIS CA C sing N N 179 HIS CA CB sing N N 180 HIS CA HA sing N N 181 HIS C O doub N N 182 HIS C OXT sing N N 183 HIS CB CG sing N N 184 HIS CB HB2 sing N N 185 HIS CB HB3 sing N N 186 HIS CG ND1 sing Y N 187 HIS CG CD2 doub Y N 188 HIS ND1 CE1 doub Y N 189 HIS ND1 HD1 sing N N 190 HIS CD2 NE2 sing Y N 191 HIS CD2 HD2 sing N N 192 HIS CE1 NE2 sing Y N 193 HIS CE1 HE1 sing N N 194 HIS NE2 HE2 sing N N 195 HIS OXT HXT sing N N 196 HOH O H1 sing N N 197 HOH O H2 sing N N 198 ILE N CA sing N N 199 ILE N H sing N N 200 ILE N H2 sing N N 201 ILE CA C sing N N 202 ILE CA CB sing N N 203 ILE CA HA sing N N 204 ILE C O doub N N 205 ILE C OXT sing N N 206 ILE CB CG1 sing N N 207 ILE CB CG2 sing N N 208 ILE CB HB sing N N 209 ILE CG1 CD1 sing N N 210 ILE CG1 HG12 sing N N 211 ILE CG1 HG13 sing N N 212 ILE CG2 HG21 sing N N 213 ILE CG2 HG22 sing N N 214 ILE CG2 HG23 sing N N 215 ILE CD1 HD11 sing N N 216 ILE CD1 HD12 sing N N 217 ILE CD1 HD13 sing N N 218 ILE OXT HXT sing N N 219 LEU N CA sing N N 220 LEU N H sing N N 221 LEU N H2 sing N N 222 LEU CA C sing N N 223 LEU CA CB sing N N 224 LEU CA HA sing N N 225 LEU C O doub N N 226 LEU C OXT sing N N 227 LEU CB CG sing N N 228 LEU CB HB2 sing N N 229 LEU CB HB3 sing N N 230 LEU CG CD1 sing N N 231 LEU CG CD2 sing N N 232 LEU CG HG sing N N 233 LEU CD1 HD11 sing N N 234 LEU CD1 HD12 sing N N 235 LEU CD1 HD13 sing N N 236 LEU CD2 HD21 sing N N 237 LEU CD2 HD22 sing N N 238 LEU CD2 HD23 sing N N 239 LEU OXT HXT sing N N 240 LYS N CA sing N N 241 LYS N H sing N N 242 LYS N H2 sing N N 243 LYS CA C sing N N 244 LYS CA CB sing N N 245 LYS CA HA sing N N 246 LYS C O doub N N 247 LYS C OXT sing N N 248 LYS CB CG sing N N 249 LYS CB HB2 sing N N 250 LYS CB HB3 sing N N 251 LYS CG CD sing N N 252 LYS CG HG2 sing N N 253 LYS CG HG3 sing N N 254 LYS CD CE sing N N 255 LYS CD HD2 sing N N 256 LYS CD HD3 sing N N 257 LYS CE NZ sing N N 258 LYS CE HE2 sing N N 259 LYS CE HE3 sing N N 260 LYS NZ HZ1 sing N N 261 LYS NZ HZ2 sing N N 262 LYS NZ HZ3 sing N N 263 LYS OXT HXT sing N N 264 MET N CA sing N N 265 MET N H sing N N 266 MET N H2 sing N N 267 MET CA C sing N N 268 MET CA CB sing N N 269 MET CA HA sing N N 270 MET C O doub N N 271 MET C OXT sing N N 272 MET CB CG sing N N 273 MET CB HB2 sing N N 274 MET CB HB3 sing N N 275 MET CG SD sing N N 276 MET CG HG2 sing N N 277 MET CG HG3 sing N N 278 MET SD CE sing N N 279 MET CE HE1 sing N N 280 MET CE HE2 sing N N 281 MET CE HE3 sing N N 282 MET OXT HXT sing N N 283 NO3 N O1 doub N N 284 NO3 N O2 sing N N 285 NO3 N O3 sing N N 286 PHE N CA sing N N 287 PHE N H sing N N 288 PHE N H2 sing N N 289 PHE CA C sing N N 290 PHE CA CB sing N N 291 PHE CA HA sing N N 292 PHE C O doub N N 293 PHE C OXT sing N N 294 PHE CB CG sing N N 295 PHE CB HB2 sing N N 296 PHE CB HB3 sing N N 297 PHE CG CD1 doub Y N 298 PHE CG CD2 sing Y N 299 PHE CD1 CE1 sing Y N 300 PHE CD1 HD1 sing N N 301 PHE CD2 CE2 doub Y N 302 PHE CD2 HD2 sing N N 303 PHE CE1 CZ doub Y N 304 PHE CE1 HE1 sing N N 305 PHE CE2 CZ sing Y N 306 PHE CE2 HE2 sing N N 307 PHE CZ HZ sing N N 308 PHE OXT HXT sing N N 309 PRO N CA sing N N 310 PRO N CD sing N N 311 PRO N H sing N N 312 PRO CA C sing N N 313 PRO CA CB sing N N 314 PRO CA HA sing N N 315 PRO C O doub N N 316 PRO C OXT sing N N 317 PRO CB CG sing N N 318 PRO CB HB2 sing N N 319 PRO CB HB3 sing N N 320 PRO CG CD sing N N 321 PRO CG HG2 sing N N 322 PRO CG HG3 sing N N 323 PRO CD HD2 sing N N 324 PRO CD HD3 sing N N 325 PRO OXT HXT sing N N 326 SER N CA sing N N 327 SER N H sing N N 328 SER N H2 sing N N 329 SER CA C sing N N 330 SER CA CB sing N N 331 SER CA HA sing N N 332 SER C O doub N N 333 SER C OXT sing N N 334 SER CB OG sing N N 335 SER CB HB2 sing N N 336 SER CB HB3 sing N N 337 SER OG HG sing N N 338 SER OXT HXT sing N N 339 THR N CA sing N N 340 THR N H sing N N 341 THR N H2 sing N N 342 THR CA C sing N N 343 THR CA CB sing N N 344 THR CA HA sing N N 345 THR C O doub N N 346 THR C OXT sing N N 347 THR CB OG1 sing N N 348 THR CB CG2 sing N N 349 THR CB HB sing N N 350 THR OG1 HG1 sing N N 351 THR CG2 HG21 sing N N 352 THR CG2 HG22 sing N N 353 THR CG2 HG23 sing N N 354 THR OXT HXT sing N N 355 TYR N CA sing N N 356 TYR N H sing N N 357 TYR N H2 sing N N 358 TYR CA C sing N N 359 TYR CA CB sing N N 360 TYR CA HA sing N N 361 TYR C O doub N N 362 TYR C OXT sing N N 363 TYR CB CG sing N N 364 TYR CB HB2 sing N N 365 TYR CB HB3 sing N N 366 TYR CG CD1 doub Y N 367 TYR CG CD2 sing Y N 368 TYR CD1 CE1 sing Y N 369 TYR CD1 HD1 sing N N 370 TYR CD2 CE2 doub Y N 371 TYR CD2 HD2 sing N N 372 TYR CE1 CZ doub Y N 373 TYR CE1 HE1 sing N N 374 TYR CE2 CZ sing Y N 375 TYR CE2 HE2 sing N N 376 TYR CZ OH sing N N 377 TYR OH HH sing N N 378 TYR OXT HXT sing N N 379 VAL N CA sing N N 380 VAL N H sing N N 381 VAL N H2 sing N N 382 VAL CA C sing N N 383 VAL CA CB sing N N 384 VAL CA HA sing N N 385 VAL C O doub N N 386 VAL C OXT sing N N 387 VAL CB CG1 sing N N 388 VAL CB CG2 sing N N 389 VAL CB HB sing N N 390 VAL CG1 HG11 sing N N 391 VAL CG1 HG12 sing N N 392 VAL CG1 HG13 sing N N 393 VAL CG2 HG21 sing N N 394 VAL CG2 HG22 sing N N 395 VAL CG2 HG23 sing N N 396 VAL OXT HXT sing N N 397 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '6-[(5S,9R)-9-(4-cyanophenyl)-3-(3,5-dichlorophenyl)-1-methyl-2,4-dioxo-1,3,7-triazaspiro[4.4]non-7-yl]pyridine-3-carboxylic acid' BJZ 3 'NITRATE ION' NO3 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1LFA _pdbx_initial_refinement_model.details 'PDB ENTRY 1LFA' #