data_3MBS # _entry.id 3MBS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3MBS pdb_00003mbs 10.2210/pdb3mbs/pdb NDB NA0515 ? ? RCSB RCSB058353 ? ? WWPDB D_1000058353 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3MBU _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3MBS _pdbx_database_status.recvd_initial_deposition_date 2010-03-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yeh, J.I.' 1 'Pohl, E.' 2 'Truan, D.' 3 'He, W.' 4 'Sheldrick, G.M.' 5 'Achim, C.' 6 # _citation.id primary _citation.title 'The crystal structure of non-modified and bipyridine-modified PNA duplexes.' _citation.journal_abbrev Chemistry _citation.journal_volume 16 _citation.page_first 11867 _citation.page_last 11875 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 0947-6539 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20859960 _citation.pdbx_database_id_DOI 10.1002/chem.201000392 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yeh, J.I.' 1 ? primary 'Pohl, E.' 2 ? primary 'Truan, D.' 3 ? primary 'He, W.' 4 ? primary 'Sheldrick, G.M.' 5 ? primary 'Du, S.' 6 ? primary 'Achim, C.' 7 ? # _cell.entry_id 3MBS _cell.length_a 18.870 _cell.length_b 28.920 _cell.length_c 54.970 _cell.angle_alpha 88.10 _cell.angle_beta 85.75 _cell.angle_gamma 79.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3MBS _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Peptide Nucleic Acid' 2261.329 4 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 5 ? ? ? ? 3 water nat water 18.015 248 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(GPN)(GPN)(CPN)(APN)(TPN)(GPN)(CPN)(CPN)K' _entity_poly.pdbx_seq_one_letter_code_can XXXXXXXXK _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GPN n 1 2 GPN n 1 3 CPN n 1 4 APN n 1 5 TPN n 1 6 GPN n 1 7 CPN n 1 8 CPN n 1 9 LYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'The molecule has been synthesized' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3MBS _struct_ref.pdbx_db_accession 3MBS _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3MBS A 1 ? 9 ? 3MBS 1001 ? 1009 ? 1001 1009 2 1 3MBS B 1 ? 9 ? 3MBS 2001 ? 2009 ? 2001 2009 3 1 3MBS C 1 ? 9 ? 3MBS 3001 ? 3009 ? 3001 3009 4 1 3MBS D 1 ? 9 ? 3MBS 4001 ? 4009 ? 4001 4009 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight APN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE ? 'C11 H16 N7 O3 1' 294.290 CPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE ? 'C10 H16 N5 O4 1' 270.265 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE ? 'C11 H16 N7 O4 1' 310.289 HOH non-polymer . WATER ? 'H2 O' 18.015 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 TPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE ? 'C11 H17 N4 O5 1' 285.276 # _exptl.entry_id 3MBS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 3 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.16 _exptl_crystal.density_percent_sol 61.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp . _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_details ;40% ethylenglycol 0.1 M Na/K/phosphate, pH 6.2, VAPOR DIFFUSION, temperature RTK ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 3 100 ? 1 # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'Double crystal monochromator' 'SINGLE WAVELENGTH' x-ray 2 1 M 'Double crystal monochromator' 'SINGLE WAVELENGTH' x-ray 3 1 M ? 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.8266 1.0 2 1 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'SLS BEAMLINE X10SA' SLS X10SA ? 0.8266 2 SYNCHROTRON 'SLS BEAMLINE X10SA' SLS X10SA ? 0.8266 3 SYNCHROTRON 'APS BEAMLINE 23-ID-B' APS 23-ID-B ? 1 # _reflns.entry_id 3MBS _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.27 _reflns.number_obs 25324 _reflns.number_all 30089 _reflns.percent_possible_obs 91.7 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 21.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2,3 # _refine.entry_id 3MBS _refine.ls_number_reflns_obs 25324 _refine.ls_number_reflns_all 29399 _refine.pdbx_ls_sigma_I -3 _refine.pdbx_ls_sigma_F 4 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.51 _refine.ls_d_res_high 1.27 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.179 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.179 _refine.ls_R_factor_R_free 0.220 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1547 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method thoughout _refine.details 'conjugate gradient refinement against I' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1,2,3 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 624 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 248 _refine_hist.number_atoms_total 892 _refine_hist.d_res_high 1.27 _refine_hist.d_res_low 18.51 # _struct.entry_id 3MBS _struct.title 'Crystal structure of 8mer PNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MBS _struct_keywords.pdbx_keywords 'Peptide Nucleic Acid' _struct_keywords.text 'Peptide Nucleic Acid PNA, Peptide Nucleic Acid' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GPN 1 C ? ? ? 1_555 A GPN 2 N ? ? A GPN 1001 A GPN 1002 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale both ? A GPN 2 C ? ? ? 1_555 A CPN 3 N ? ? A GPN 1002 A CPN 1003 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale3 covale both ? A CPN 3 C ? ? ? 1_555 A APN 4 N ? ? A CPN 1003 A APN 1004 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale4 covale both ? A APN 4 C ? ? ? 1_555 A TPN 5 N ? ? A APN 1004 A TPN 1005 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale5 covale both ? A TPN 5 C ? ? ? 1_555 A GPN 6 N ? ? A TPN 1005 A GPN 1006 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale6 covale both ? A GPN 6 C ? ? ? 1_555 A CPN 7 N ? ? A GPN 1006 A CPN 1007 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale7 covale both ? A CPN 7 C ? ? ? 1_555 A CPN 8 N ? ? A CPN 1007 A CPN 1008 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale8 covale both ? A CPN 8 C ? ? ? 1_555 A LYS 9 N ? ? A CPN 1008 A LYS 1009 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale9 covale both ? B GPN 1 C ? ? ? 1_555 B GPN 2 N ? ? B GPN 2001 B GPN 2002 1_555 ? ? ? ? ? ? ? 1.312 ? ? covale10 covale both ? B GPN 2 C ? ? ? 1_555 B CPN 3 N ? ? B GPN 2002 B CPN 2003 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale11 covale both ? B CPN 3 C ? ? ? 1_555 B APN 4 N ? ? B CPN 2003 B APN 2004 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale12 covale both ? B APN 4 C ? ? ? 1_555 B TPN 5 N ? ? B APN 2004 B TPN 2005 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale13 covale both ? B TPN 5 C ? ? ? 1_555 B GPN 6 N ? ? B TPN 2005 B GPN 2006 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale14 covale both ? B GPN 6 C ? ? ? 1_555 B CPN 7 N ? ? B GPN 2006 B CPN 2007 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale15 covale both ? B CPN 7 C ? ? ? 1_555 B CPN 8 N ? ? B CPN 2007 B CPN 2008 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale16 covale both ? C GPN 1 C ? ? ? 1_555 C GPN 2 N ? ? C GPN 3001 C GPN 3002 1_555 ? ? ? ? ? ? ? 1.357 ? ? covale17 covale both ? C GPN 2 C ? ? ? 1_555 C CPN 3 N ? ? C GPN 3002 C CPN 3003 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale18 covale both ? C CPN 3 C ? ? ? 1_555 C APN 4 N ? ? C CPN 3003 C APN 3004 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale19 covale both ? C APN 4 C ? ? ? 1_555 C TPN 5 N ? ? C APN 3004 C TPN 3005 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale20 covale both ? C TPN 5 C ? ? ? 1_555 C GPN 6 N ? ? C TPN 3005 C GPN 3006 1_555 ? ? ? ? ? ? ? 1.303 ? ? covale21 covale both ? C GPN 6 C ? ? ? 1_555 C CPN 7 N ? ? C GPN 3006 C CPN 3007 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale22 covale both ? C CPN 7 C ? ? ? 1_555 C CPN 8 N ? ? C CPN 3007 C CPN 3008 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale23 covale both ? C CPN 8 C ? ? ? 1_555 C LYS 9 N ? ? C CPN 3008 C LYS 3009 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale24 covale both ? D GPN 1 C ? ? ? 1_555 D GPN 2 N ? ? D GPN 4001 D GPN 4002 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale25 covale both ? D GPN 2 C ? ? ? 1_555 D CPN 3 N ? ? D GPN 4002 D CPN 4003 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale26 covale both ? D CPN 3 C ? ? ? 1_555 D APN 4 N ? ? D CPN 4003 D APN 4004 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale27 covale both ? D APN 4 C ? ? ? 1_555 D TPN 5 N ? ? D APN 4004 D TPN 4005 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale28 covale both ? D TPN 5 C ? ? ? 1_555 D GPN 6 N ? ? D TPN 4005 D GPN 4006 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale29 covale both ? D GPN 6 C ? ? ? 1_555 D CPN 7 N ? ? D GPN 4006 D CPN 4007 1_555 ? ? ? ? ? ? ? 1.357 ? ? covale30 covale both ? D CPN 7 C ? ? ? 1_555 D CPN 8 N ? ? D CPN 4007 D CPN 4008 1_555 ? ? ? ? ? ? ? 1.355 ? ? hydrog1 hydrog ? ? A GPN 1 N1 ? ? ? 1_555 B CPN 8 N3 ? ? A GPN 1001 B CPN 2008 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GPN 1 N2 ? ? ? 1_555 B CPN 8 O2 ? ? A GPN 1001 B CPN 2008 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GPN 1 O6 ? ? ? 1_555 B CPN 8 N4 ? ? A GPN 1001 B CPN 2008 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A GPN 2 N1 ? ? ? 1_555 B CPN 7 N3 ? ? A GPN 1002 B CPN 2007 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A GPN 2 N2 ? ? ? 1_555 B CPN 7 O2 ? ? A GPN 1002 B CPN 2007 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A GPN 2 O6 ? ? ? 1_555 B CPN 7 N4 ? ? A GPN 1002 B CPN 2007 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A CPN 3 N3 ? ? ? 1_555 B GPN 6 N1 ? ? A CPN 1003 B GPN 2006 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A CPN 3 N4 ? ? ? 1_555 B GPN 6 O6 ? ? A CPN 1003 B GPN 2006 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A CPN 3 O2 ? ? ? 1_555 B GPN 6 N2 ? ? A CPN 1003 B GPN 2006 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A APN 4 N1 ? ? ? 1_555 B TPN 5 N3 ? ? A APN 1004 B TPN 2005 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A APN 4 N6 ? ? ? 1_555 B TPN 5 O4 ? ? A APN 1004 B TPN 2005 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A TPN 5 N3 ? ? ? 1_555 B APN 4 N1 ? ? A TPN 1005 B APN 2004 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A TPN 5 O4 ? ? ? 1_555 B APN 4 N6 ? ? A TPN 1005 B APN 2004 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A GPN 6 N1 ? ? ? 1_555 B CPN 3 N3 ? ? A GPN 1006 B CPN 2003 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A GPN 6 N2 ? ? ? 1_555 B CPN 3 O2 ? ? A GPN 1006 B CPN 2003 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A GPN 6 O6 ? ? ? 1_555 B CPN 3 N4 ? ? A GPN 1006 B CPN 2003 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A CPN 7 N3 ? ? ? 1_555 B GPN 2 N1 ? ? A CPN 1007 B GPN 2002 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A CPN 7 N4 ? ? ? 1_555 B GPN 2 O6 ? ? A CPN 1007 B GPN 2002 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A CPN 7 O2 ? ? ? 1_555 B GPN 2 N2 ? ? A CPN 1007 B GPN 2002 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A CPN 8 N3 ? ? ? 1_555 B GPN 1 N1 ? ? A CPN 1008 B GPN 2001 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A CPN 8 N4 ? ? ? 1_555 B GPN 1 O6 ? ? A CPN 1008 B GPN 2001 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A CPN 8 O2 ? ? ? 1_555 B GPN 1 N2 ? ? A CPN 1008 B GPN 2001 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C GPN 1 N1 ? ? ? 1_555 D CPN 8 N3 ? ? C GPN 3001 D CPN 4008 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C GPN 1 N2 ? ? ? 1_555 D CPN 8 O2 ? ? C GPN 3001 D CPN 4008 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C GPN 1 O6 ? ? ? 1_555 D CPN 8 N4 ? ? C GPN 3001 D CPN 4008 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C GPN 2 N1 ? ? ? 1_555 D CPN 7 N3 ? ? C GPN 3002 D CPN 4007 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C GPN 2 N2 ? ? ? 1_555 D CPN 7 O2 ? ? C GPN 3002 D CPN 4007 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C GPN 2 O6 ? ? ? 1_555 D CPN 7 N4 ? ? C GPN 3002 D CPN 4007 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C CPN 3 N3 ? ? ? 1_555 D GPN 6 N1 ? ? C CPN 3003 D GPN 4006 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C CPN 3 N4 ? ? ? 1_555 D GPN 6 O6 ? ? C CPN 3003 D GPN 4006 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C CPN 3 O2 ? ? ? 1_555 D GPN 6 N2 ? ? C CPN 3003 D GPN 4006 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C APN 4 N1 ? ? ? 1_555 D TPN 5 N3 ? ? C APN 3004 D TPN 4005 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C APN 4 N6 ? ? ? 1_555 D TPN 5 O4 ? ? C APN 3004 D TPN 4005 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C TPN 5 N3 ? ? ? 1_555 D APN 4 N1 ? ? C TPN 3005 D APN 4004 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C TPN 5 O4 ? ? ? 1_555 D APN 4 N6 ? ? C TPN 3005 D APN 4004 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C GPN 6 N1 ? ? ? 1_555 D CPN 3 N3 ? ? C GPN 3006 D CPN 4003 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C GPN 6 N2 ? ? ? 1_555 D CPN 3 O2 ? ? C GPN 3006 D CPN 4003 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C GPN 6 O6 ? ? ? 1_555 D CPN 3 N4 ? ? C GPN 3006 D CPN 4003 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C CPN 7 N3 ? ? ? 1_555 D GPN 2 N1 ? ? C CPN 3007 D GPN 4002 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C CPN 7 N4 ? ? ? 1_555 D GPN 2 O6 ? ? C CPN 3007 D GPN 4002 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C CPN 7 O2 ? ? ? 1_555 D GPN 2 N2 ? ? C CPN 3007 D GPN 4002 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C CPN 8 N3 ? ? ? 1_555 D GPN 1 N1 ? ? C CPN 3008 D GPN 4001 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C CPN 8 N4 ? ? ? 1_555 D GPN 1 O6 ? ? C CPN 3008 D GPN 4001 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C CPN 8 O2 ? ? ? 1_555 D GPN 1 N2 ? ? C CPN 3008 D GPN 4001 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 5003 ? 4 'BINDING SITE FOR RESIDUE EDO A 5003' AC2 Software A EDO 5005 ? 6 'BINDING SITE FOR RESIDUE EDO A 5005' AC3 Software B EDO 5004 ? 3 'BINDING SITE FOR RESIDUE EDO B 5004' AC4 Software D EDO 5001 ? 4 'BINDING SITE FOR RESIDUE EDO D 5001' AC5 Software D EDO 5002 ? 6 'BINDING SITE FOR RESIDUE EDO D 5002' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GPN A 2 ? GPN A 1002 . ? 1_555 ? 2 AC1 4 CPN A 3 ? CPN A 1003 . ? 1_555 ? 3 AC1 4 EDO F . ? EDO A 5005 . ? 1_555 ? 4 AC1 4 HOH J . ? HOH A 9004 . ? 1_555 ? 5 AC2 6 GPN A 1 ? GPN A 1001 . ? 1_555 ? 6 AC2 6 GPN A 2 ? GPN A 1002 . ? 1_555 ? 7 AC2 6 EDO E . ? EDO A 5003 . ? 1_555 ? 8 AC2 6 HOH J . ? HOH A 9080 . ? 1_555 ? 9 AC2 6 CPN C 8 ? CPN C 3008 . ? 1_565 ? 10 AC2 6 GPN D 1 ? GPN D 4001 . ? 1_565 ? 11 AC3 3 GPN B 2 ? GPN B 2002 . ? 1_555 ? 12 AC3 3 CPN B 3 ? CPN B 2003 . ? 1_555 ? 13 AC3 3 HOH K . ? HOH B 9071 . ? 1_555 ? 14 AC4 4 GPN D 2 ? GPN D 4002 . ? 1_555 ? 15 AC4 4 CPN D 3 ? CPN D 4003 . ? 1_555 ? 16 AC4 4 EDO I . ? EDO D 5002 . ? 1_555 ? 17 AC4 4 HOH M . ? HOH D 9012 . ? 1_555 ? 18 AC5 6 GPN A 1 ? GPN A 1001 . ? 1_545 ? 19 AC5 6 HOH J . ? HOH A 9044 . ? 1_545 ? 20 AC5 6 CPN B 8 ? CPN B 2008 . ? 1_545 ? 21 AC5 6 GPN D 1 ? GPN D 4001 . ? 1_555 ? 22 AC5 6 GPN D 2 ? GPN D 4002 . ? 1_555 ? 23 AC5 6 EDO H . ? EDO D 5001 . ? 1_555 ? # _database_PDB_matrix.entry_id 3MBS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3MBS _atom_sites.fract_transf_matrix[1][1] 0.052994 _atom_sites.fract_transf_matrix[1][2] -0.009764 _atom_sites.fract_transf_matrix[1][3] -0.003742 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035160 _atom_sites.fract_transf_matrix[2][3] -0.000707 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018246 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GPN 1 1001 1001 GPN GPN A . n A 1 2 GPN 2 1002 1002 GPN GPN A . n A 1 3 CPN 3 1003 1003 CPN CPN A . n A 1 4 APN 4 1004 1004 APN APN A . n A 1 5 TPN 5 1005 1005 TPN TPN A . n A 1 6 GPN 6 1006 1006 GPN GPN A . n A 1 7 CPN 7 1007 1007 CPN CPN A . n A 1 8 CPN 8 1008 1008 CPN CPN A . n A 1 9 LYS 9 1009 1009 LYS LYS A . n B 1 1 GPN 1 2001 2001 GPN GPN B . n B 1 2 GPN 2 2002 2002 GPN GPN B . n B 1 3 CPN 3 2003 2003 CPN CPN B . n B 1 4 APN 4 2004 2004 APN APN B . n B 1 5 TPN 5 2005 2005 TPN TPN B . n B 1 6 GPN 6 2006 2006 GPN GPN B . n B 1 7 CPN 7 2007 2007 CPN CPN B . n B 1 8 CPN 8 2008 2008 CPN CPN B . n B 1 9 LYS 9 2009 ? ? ? B . n C 1 1 GPN 1 3001 3001 GPN GPN C . n C 1 2 GPN 2 3002 3002 GPN GPN C . n C 1 3 CPN 3 3003 3003 CPN CPN C . n C 1 4 APN 4 3004 3004 APN APN C . n C 1 5 TPN 5 3005 3005 TPN TPN C . n C 1 6 GPN 6 3006 3006 GPN GPN C . n C 1 7 CPN 7 3007 3007 CPN CPN C . n C 1 8 CPN 8 3008 3008 CPN CPN C . n C 1 9 LYS 9 3009 3009 LYS LYS C . n D 1 1 GPN 1 4001 4001 GPN GPN D . n D 1 2 GPN 2 4002 4002 GPN GPN D . n D 1 3 CPN 3 4003 4003 CPN CPN D . n D 1 4 APN 4 4004 4004 APN APN D . n D 1 5 TPN 5 4005 4005 TPN TPN D . n D 1 6 GPN 6 4006 4006 GPN GPN D . n D 1 7 CPN 7 4007 4007 CPN CPN D . n D 1 8 CPN 8 4008 4008 CPN CPN D . n D 1 9 LYS 9 4009 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EDO 1 5003 5003 EDO EDO A . F 2 EDO 1 5005 5005 EDO EDO A . G 2 EDO 1 5004 5004 EDO EDO B . H 2 EDO 1 5001 5001 EDO EDO D . I 2 EDO 1 5002 5002 EDO EDO D . J 3 HOH 1 9004 9004 HOH HOH A . J 3 HOH 2 9006 9006 HOH HOH A . J 3 HOH 3 9014 9014 HOH HOH A . J 3 HOH 4 9015 9015 HOH HOH A . J 3 HOH 5 9021 9021 HOH HOH A . J 3 HOH 6 9028 9028 HOH HOH A . J 3 HOH 7 9030 9030 HOH HOH A . J 3 HOH 8 9037 9037 HOH HOH A . J 3 HOH 9 9041 9041 HOH HOH A . J 3 HOH 10 9044 9044 HOH HOH A . J 3 HOH 11 9051 9051 HOH HOH A . J 3 HOH 12 9055 9055 HOH HOH A . J 3 HOH 13 9057 9057 HOH HOH A . J 3 HOH 14 9062 9062 HOH HOH A . J 3 HOH 15 9064 9064 HOH HOH A . J 3 HOH 16 9069 9069 HOH HOH A . J 3 HOH 17 9076 9076 HOH HOH A . J 3 HOH 18 9080 9080 HOH HOH A . J 3 HOH 19 9083 9083 HOH HOH A . J 3 HOH 20 9090 9090 HOH HOH A . J 3 HOH 21 9097 9097 HOH HOH A . J 3 HOH 22 9105 9105 HOH HOH A . J 3 HOH 23 9108 9108 HOH HOH A . J 3 HOH 24 9110 9110 HOH HOH A . J 3 HOH 25 9113 9113 HOH HOH A . J 3 HOH 26 9115 9115 HOH HOH A . J 3 HOH 27 9118 9118 HOH HOH A . J 3 HOH 28 9120 9120 HOH HOH A . J 3 HOH 29 9125 9125 HOH HOH A . J 3 HOH 30 9134 9134 HOH HOH A . J 3 HOH 31 9139 9139 HOH HOH A . J 3 HOH 32 9141 9141 HOH HOH A . J 3 HOH 33 9145 9145 HOH HOH A . J 3 HOH 34 9146 9146 HOH HOH A . J 3 HOH 35 9148 9148 HOH HOH A . J 3 HOH 36 9149 9149 HOH HOH A . J 3 HOH 37 9152 9152 HOH HOH A . J 3 HOH 38 9153 9153 HOH HOH A . J 3 HOH 39 9154 9154 HOH HOH A . J 3 HOH 40 9155 9155 HOH HOH A . J 3 HOH 41 9173 9173 HOH HOH A . J 3 HOH 42 9180 9180 HOH HOH A . J 3 HOH 43 9181 9181 HOH HOH A . J 3 HOH 44 9186 9186 HOH HOH A . J 3 HOH 45 9188 9188 HOH HOH A . J 3 HOH 46 9191 9191 HOH HOH A . J 3 HOH 47 9196 9196 HOH HOH A . J 3 HOH 48 9199 9199 HOH HOH A . J 3 HOH 49 9200 9200 HOH HOH A . J 3 HOH 50 9214 9214 HOH HOH A . J 3 HOH 51 9220 9220 HOH HOH A . J 3 HOH 52 9222 9222 HOH HOH A . J 3 HOH 53 9228 9228 HOH HOH A . J 3 HOH 54 9229 9229 HOH HOH A . J 3 HOH 55 9230 9230 HOH HOH A . J 3 HOH 56 9231 9231 HOH HOH A . J 3 HOH 57 9241 9241 HOH HOH A . J 3 HOH 58 9245 9245 HOH HOH A . J 3 HOH 59 9247 9247 HOH HOH A . J 3 HOH 60 9248 9248 HOH HOH A . J 3 HOH 61 9250 9250 HOH HOH A . K 3 HOH 1 9001 9001 HOH HOH B . K 3 HOH 2 9002 9002 HOH HOH B . K 3 HOH 3 9005 9005 HOH HOH B . K 3 HOH 4 9008 9008 HOH HOH B . K 3 HOH 5 9013 9013 HOH HOH B . K 3 HOH 6 9018 9018 HOH HOH B . K 3 HOH 7 9022 9022 HOH HOH B . K 3 HOH 8 9024 9024 HOH HOH B . K 3 HOH 9 9027 9027 HOH HOH B . K 3 HOH 10 9034 9034 HOH HOH B . K 3 HOH 11 9038 9038 HOH HOH B . K 3 HOH 12 9042 9042 HOH HOH B . K 3 HOH 13 9045 9045 HOH HOH B . K 3 HOH 14 9053 9053 HOH HOH B . K 3 HOH 15 9066 9066 HOH HOH B . K 3 HOH 16 9067 9067 HOH HOH B . K 3 HOH 17 9068 9068 HOH HOH B . K 3 HOH 18 9071 9071 HOH HOH B . K 3 HOH 19 9074 9074 HOH HOH B . K 3 HOH 20 9075 9075 HOH HOH B . K 3 HOH 21 9077 9077 HOH HOH B . K 3 HOH 22 9078 9078 HOH HOH B . K 3 HOH 23 9079 9079 HOH HOH B . K 3 HOH 24 9081 9081 HOH HOH B . K 3 HOH 25 9082 9082 HOH HOH B . K 3 HOH 26 9084 9084 HOH HOH B . K 3 HOH 27 9095 9095 HOH HOH B . K 3 HOH 28 9099 9099 HOH HOH B . K 3 HOH 29 9111 9111 HOH HOH B . K 3 HOH 30 9117 9117 HOH HOH B . K 3 HOH 31 9124 9124 HOH HOH B . K 3 HOH 32 9127 9127 HOH HOH B . K 3 HOH 33 9129 9129 HOH HOH B . K 3 HOH 34 9130 9130 HOH HOH B . K 3 HOH 35 9131 9131 HOH HOH B . K 3 HOH 36 9132 9132 HOH HOH B . K 3 HOH 37 9135 9135 HOH HOH B . K 3 HOH 38 9140 9140 HOH HOH B . K 3 HOH 39 9142 9142 HOH HOH B . K 3 HOH 40 9147 9147 HOH HOH B . K 3 HOH 41 9157 9157 HOH HOH B . K 3 HOH 42 9162 9162 HOH HOH B . K 3 HOH 43 9163 9163 HOH HOH B . K 3 HOH 44 9165 9165 HOH HOH B . K 3 HOH 45 9166 9166 HOH HOH B . K 3 HOH 46 9168 9168 HOH HOH B . K 3 HOH 47 9172 9172 HOH HOH B . K 3 HOH 48 9174 9174 HOH HOH B . K 3 HOH 49 9175 9175 HOH HOH B . K 3 HOH 50 9177 9177 HOH HOH B . K 3 HOH 51 9179 9179 HOH HOH B . K 3 HOH 52 9182 9182 HOH HOH B . K 3 HOH 53 9193 9193 HOH HOH B . K 3 HOH 54 9197 9197 HOH HOH B . K 3 HOH 55 9198 9198 HOH HOH B . K 3 HOH 56 9203 9203 HOH HOH B . K 3 HOH 57 9206 9206 HOH HOH B . K 3 HOH 58 9208 9208 HOH HOH B . K 3 HOH 59 9217 9217 HOH HOH B . K 3 HOH 60 9218 9218 HOH HOH B . K 3 HOH 61 9225 9225 HOH HOH B . K 3 HOH 62 9234 9234 HOH HOH B . K 3 HOH 63 9235 9235 HOH HOH B . K 3 HOH 64 9236 9236 HOH HOH B . K 3 HOH 65 9238 9238 HOH HOH B . K 3 HOH 66 9240 9240 HOH HOH B . K 3 HOH 67 9243 9243 HOH HOH B . K 3 HOH 68 9249 9249 HOH HOH B . L 3 HOH 1 9007 9007 HOH HOH C . L 3 HOH 2 9009 9009 HOH HOH C . L 3 HOH 3 9011 9011 HOH HOH C . L 3 HOH 4 9016 9016 HOH HOH C . L 3 HOH 5 9017 9017 HOH HOH C . L 3 HOH 6 9019 9019 HOH HOH C . L 3 HOH 7 9020 9020 HOH HOH C . L 3 HOH 8 9026 9026 HOH HOH C . L 3 HOH 9 9032 9032 HOH HOH C . L 3 HOH 10 9035 9035 HOH HOH C . L 3 HOH 11 9039 9039 HOH HOH C . L 3 HOH 12 9049 9049 HOH HOH C . L 3 HOH 13 9054 9054 HOH HOH C . L 3 HOH 14 9058 9058 HOH HOH C . L 3 HOH 15 9059 9059 HOH HOH C . L 3 HOH 16 9060 9060 HOH HOH C . L 3 HOH 17 9073 9073 HOH HOH C . L 3 HOH 18 9093 9093 HOH HOH C . L 3 HOH 19 9096 9096 HOH HOH C . L 3 HOH 20 9098 9098 HOH HOH C . L 3 HOH 21 9100 9100 HOH HOH C . L 3 HOH 22 9101 9101 HOH HOH C . L 3 HOH 23 9106 9106 HOH HOH C . L 3 HOH 24 9112 9112 HOH HOH C . L 3 HOH 25 9116 9116 HOH HOH C . L 3 HOH 26 9119 9119 HOH HOH C . L 3 HOH 27 9121 9121 HOH HOH C . L 3 HOH 28 9122 9122 HOH HOH C . L 3 HOH 29 9126 9126 HOH HOH C . L 3 HOH 30 9133 9133 HOH HOH C . L 3 HOH 31 9136 9136 HOH HOH C . L 3 HOH 32 9143 9143 HOH HOH C . L 3 HOH 33 9144 9144 HOH HOH C . L 3 HOH 34 9150 9150 HOH HOH C . L 3 HOH 35 9151 9151 HOH HOH C . L 3 HOH 36 9156 9156 HOH HOH C . L 3 HOH 37 9158 9158 HOH HOH C . L 3 HOH 38 9160 9160 HOH HOH C . L 3 HOH 39 9167 9167 HOH HOH C . L 3 HOH 40 9169 9169 HOH HOH C . L 3 HOH 41 9171 9171 HOH HOH C . L 3 HOH 42 9183 9183 HOH HOH C . L 3 HOH 43 9185 9185 HOH HOH C . L 3 HOH 44 9187 9187 HOH HOH C . L 3 HOH 45 9189 9189 HOH HOH C . L 3 HOH 46 9192 9192 HOH HOH C . L 3 HOH 47 9195 9195 HOH HOH C . L 3 HOH 48 9204 9204 HOH HOH C . L 3 HOH 49 9205 9205 HOH HOH C . L 3 HOH 50 9209 9209 HOH HOH C . L 3 HOH 51 9210 9210 HOH HOH C . L 3 HOH 52 9213 9213 HOH HOH C . L 3 HOH 53 9219 9219 HOH HOH C . L 3 HOH 54 9223 9223 HOH HOH C . L 3 HOH 55 9224 9224 HOH HOH C . L 3 HOH 56 9226 9226 HOH HOH C . L 3 HOH 57 9232 9232 HOH HOH C . L 3 HOH 58 9233 9233 HOH HOH C . L 3 HOH 59 9239 9239 HOH HOH C . L 3 HOH 60 9244 9244 HOH HOH C . M 3 HOH 1 9003 9003 HOH HOH D . M 3 HOH 2 9010 9010 HOH HOH D . M 3 HOH 3 9012 9012 HOH HOH D . M 3 HOH 4 9023 9023 HOH HOH D . M 3 HOH 5 9025 9025 HOH HOH D . M 3 HOH 6 9029 9029 HOH HOH D . M 3 HOH 7 9031 9031 HOH HOH D . M 3 HOH 8 9033 9033 HOH HOH D . M 3 HOH 9 9036 9036 HOH HOH D . M 3 HOH 10 9040 9040 HOH HOH D . M 3 HOH 11 9043 9043 HOH HOH D . M 3 HOH 12 9046 9046 HOH HOH D . M 3 HOH 13 9047 9047 HOH HOH D . M 3 HOH 14 9048 9048 HOH HOH D . M 3 HOH 15 9050 9050 HOH HOH D . M 3 HOH 16 9052 9052 HOH HOH D . M 3 HOH 17 9056 9056 HOH HOH D . M 3 HOH 18 9061 9061 HOH HOH D . M 3 HOH 19 9063 9063 HOH HOH D . M 3 HOH 20 9065 9065 HOH HOH D . M 3 HOH 21 9070 9070 HOH HOH D . M 3 HOH 22 9072 9072 HOH HOH D . M 3 HOH 23 9085 9085 HOH HOH D . M 3 HOH 24 9086 9086 HOH HOH D . M 3 HOH 25 9087 9087 HOH HOH D . M 3 HOH 26 9088 9088 HOH HOH D . M 3 HOH 27 9089 9089 HOH HOH D . M 3 HOH 28 9091 9091 HOH HOH D . M 3 HOH 29 9092 9092 HOH HOH D . M 3 HOH 30 9094 9094 HOH HOH D . M 3 HOH 31 9102 9102 HOH HOH D . M 3 HOH 32 9103 9103 HOH HOH D . M 3 HOH 33 9104 9104 HOH HOH D . M 3 HOH 34 9107 9107 HOH HOH D . M 3 HOH 35 9109 9109 HOH HOH D . M 3 HOH 36 9114 9114 HOH HOH D . M 3 HOH 37 9123 9123 HOH HOH D . M 3 HOH 38 9128 9128 HOH HOH D . M 3 HOH 39 9137 9137 HOH HOH D . M 3 HOH 40 9138 9138 HOH HOH D . M 3 HOH 41 9159 9159 HOH HOH D . M 3 HOH 42 9161 9161 HOH HOH D . M 3 HOH 43 9164 9164 HOH HOH D . M 3 HOH 44 9176 9176 HOH HOH D . M 3 HOH 45 9184 9184 HOH HOH D . M 3 HOH 46 9190 9190 HOH HOH D . M 3 HOH 47 9194 9194 HOH HOH D . M 3 HOH 48 9201 9201 HOH HOH D . M 3 HOH 49 9202 9202 HOH HOH D . M 3 HOH 50 9207 9207 HOH HOH D . M 3 HOH 51 9211 9211 HOH HOH D . M 3 HOH 52 9212 9212 HOH HOH D . M 3 HOH 53 9215 9215 HOH HOH D . M 3 HOH 54 9216 9216 HOH HOH D . M 3 HOH 55 9221 9221 HOH HOH D . M 3 HOH 56 9227 9227 HOH HOH D . M 3 HOH 57 9237 9237 HOH HOH D . M 3 HOH 58 9242 9242 HOH HOH D . M 3 HOH 59 9246 9246 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,J,K 2 1 C,D,H,I,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-03-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2019-12-11 5 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' Advisory 7 5 'Structure model' 'Atomic model' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 3 'Structure model' software 3 4 'Structure model' ndb_struct_na_base_pair 4 4 'Structure model' ndb_struct_na_base_pair_step 5 4 'Structure model' pdbx_distant_solvent_atoms 6 4 'Structure model' pdbx_struct_assembly 7 4 'Structure model' pdbx_struct_assembly_gen 8 4 'Structure model' struct_conn 9 4 'Structure model' struct_conn_type 10 5 'Structure model' atom_site 11 5 'Structure model' atom_site_anisotrop 12 5 'Structure model' chem_comp_atom 13 5 'Structure model' chem_comp_bond 14 5 'Structure model' database_2 15 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 16 5 'Structure model' struct_conn 17 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_atom_site.auth_atom_id' 2 5 'Structure model' '_atom_site.label_atom_id' 3 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 4 5 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 5 5 'Structure model' '_database_2.pdbx_DOI' 6 5 'Structure model' '_database_2.pdbx_database_accession' 7 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 10 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 11 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 12 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXS phasing . ? 1 SHELXD phasing . ? 2 ACORN phasing . ? 3 SHELXL-97 refinement . ? 4 HKL-2000 'data reduction' . ? 5 HKL-2000 'data scaling' . ? 6 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 N _pdbx_validate_rmsd_bond.auth_asym_id_1 C _pdbx_validate_rmsd_bond.auth_comp_id_1 LYS _pdbx_validate_rmsd_bond.auth_seq_id_1 3009 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CA _pdbx_validate_rmsd_bond.auth_asym_id_2 C _pdbx_validate_rmsd_bond.auth_comp_id_2 LYS _pdbx_validate_rmsd_bond.auth_seq_id_2 3009 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.242 _pdbx_validate_rmsd_bond.bond_target_value 1.459 _pdbx_validate_rmsd_bond.bond_deviation -0.217 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.020 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 LYS _pdbx_validate_rmsd_angle.auth_seq_id_1 3009 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 LYS _pdbx_validate_rmsd_angle.auth_seq_id_2 3009 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 LYS _pdbx_validate_rmsd_angle.auth_seq_id_3 3009 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 130.32 _pdbx_validate_rmsd_angle.angle_target_value 111.00 _pdbx_validate_rmsd_angle.angle_deviation 19.32 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 9199 ? 6.27 . 2 1 O ? A HOH 9214 ? 6.09 . 3 1 O ? A HOH 9231 ? 6.48 . 4 1 O ? B HOH 9182 ? 6.83 . 5 1 O ? B HOH 9208 ? 6.27 . 6 1 O ? B HOH 9243 ? 6.64 . 7 1 O ? D HOH 9063 ? 6.26 . 8 1 O ? D HOH 9107 ? 6.49 . 9 1 O ? D HOH 9221 ? 6.19 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C LYS 3009 ? O ? C LYS 9 O 2 1 Y 1 C LYS 3009 ? CB ? C LYS 9 CB 3 1 Y 1 C LYS 3009 ? CG ? C LYS 9 CG 4 1 Y 1 C LYS 3009 ? CD ? C LYS 9 CD 5 1 Y 1 C LYS 3009 ? CE ? C LYS 9 CE 6 1 Y 1 C LYS 3009 ? NZ ? C LYS 9 NZ 7 1 Y 1 D GPN 4001 ? "C2'" ? D GPN 1 "C2'" 8 1 Y 1 D GPN 4001 ? N ? D GPN 1 N 9 1 Y 1 D CPN 4008 ? C ? D CPN 8 C 10 1 Y 1 D CPN 4008 ? O ? D CPN 8 O # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B LYS 2009 ? B LYS 9 2 1 Y 1 D LYS 4009 ? D LYS 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal APN "C8'" C N N 1 APN "C7'" C N N 2 APN "O7'" O N N 3 APN "C5'" C N N 4 APN C C N N 5 APN O O N N 6 APN OXT O N N 7 APN "N4'" N N N 8 APN "C3'" C N N 9 APN "C2'" C N N 10 APN N N N N 11 APN N9 N Y N 12 APN C8 C Y N 13 APN N7 N Y N 14 APN C5 C Y N 15 APN C6 C Y N 16 APN N6 N N N 17 APN N1 N Y N 18 APN C2 C Y N 19 APN N3 N Y N 20 APN C4 C Y N 21 APN "H8'1" H N N 22 APN "H8'2" H N N 23 APN "H5'1" H N N 24 APN "H5'2" H N N 25 APN HXT H N N 26 APN "H3'1" H N N 27 APN "H3'2" H N N 28 APN "H2'1" H N N 29 APN "H2'2" H N N 30 APN H H N N 31 APN H2 H N N 32 APN H3 H N N 33 APN H8 H N N 34 APN HN61 H N N 35 APN HN62 H N N 36 APN H21 H N N 37 CPN "C8'" C N N 38 CPN "C7'" C N N 39 CPN "O7'" O N N 40 CPN "C5'" C N N 41 CPN C C N N 42 CPN O O N N 43 CPN OXT O N N 44 CPN "N4'" N N N 45 CPN "C3'" C N N 46 CPN "C2'" C N N 47 CPN N N N N 48 CPN N1 N N N 49 CPN C2 C N N 50 CPN N3 N N N 51 CPN C4 C N N 52 CPN C5 C N N 53 CPN C6 C N N 54 CPN O2 O N N 55 CPN N4 N N N 56 CPN "H8'1" H N N 57 CPN "H8'2" H N N 58 CPN "H5'1" H N N 59 CPN "H5'2" H N N 60 CPN HXT H N N 61 CPN "H3'1" H N N 62 CPN "H3'2" H N N 63 CPN "H2'1" H N N 64 CPN "H2'2" H N N 65 CPN H H N N 66 CPN H2 H N N 67 CPN H3 H N N 68 CPN H5 H N N 69 CPN H6 H N N 70 CPN HN41 H N N 71 CPN HN42 H N N 72 EDO C1 C N N 73 EDO O1 O N N 74 EDO C2 C N N 75 EDO O2 O N N 76 EDO H11 H N N 77 EDO H12 H N N 78 EDO HO1 H N N 79 EDO H21 H N N 80 EDO H22 H N N 81 EDO HO2 H N N 82 GPN "C8'" C N N 83 GPN "C7'" C N N 84 GPN "O7'" O N N 85 GPN "C5'" C N N 86 GPN C C N N 87 GPN O O N N 88 GPN OXT O N N 89 GPN "N4'" N N N 90 GPN "C3'" C N N 91 GPN "C2'" C N N 92 GPN N N N N 93 GPN N9 N Y N 94 GPN C8 C Y N 95 GPN N7 N Y N 96 GPN C5 C Y N 97 GPN C6 C N N 98 GPN O6 O N N 99 GPN N1 N N N 100 GPN C2 C N N 101 GPN N2 N N N 102 GPN N3 N N N 103 GPN C4 C Y N 104 GPN "H8'1" H N N 105 GPN "H8'2" H N N 106 GPN "H5'1" H N N 107 GPN "H5'2" H N N 108 GPN HXT H N N 109 GPN "H3'1" H N N 110 GPN "H3'2" H N N 111 GPN "H2'1" H N N 112 GPN "H2'2" H N N 113 GPN H H N N 114 GPN H2 H N N 115 GPN H3 H N N 116 GPN H8 H N N 117 GPN HN1 H N N 118 GPN HN21 H N N 119 GPN HN22 H N N 120 HOH O O N N 121 HOH H1 H N N 122 HOH H2 H N N 123 LYS N N N N 124 LYS CA C N S 125 LYS C C N N 126 LYS O O N N 127 LYS CB C N N 128 LYS CG C N N 129 LYS CD C N N 130 LYS CE C N N 131 LYS NZ N N N 132 LYS OXT O N N 133 LYS H H N N 134 LYS H2 H N N 135 LYS HA H N N 136 LYS HB2 H N N 137 LYS HB3 H N N 138 LYS HG2 H N N 139 LYS HG3 H N N 140 LYS HD2 H N N 141 LYS HD3 H N N 142 LYS HE2 H N N 143 LYS HE3 H N N 144 LYS HZ1 H N N 145 LYS HZ2 H N N 146 LYS HZ3 H N N 147 LYS HXT H N N 148 TPN "C8'" C N N 149 TPN "C7'" C N N 150 TPN "O7'" O N N 151 TPN "C5'" C N N 152 TPN C C N N 153 TPN O O N N 154 TPN OXT O N N 155 TPN "N4'" N N N 156 TPN "C3'" C N N 157 TPN "C2'" C N N 158 TPN N N N N 159 TPN N1 N N N 160 TPN C6 C N N 161 TPN C2 C N N 162 TPN O2 O N N 163 TPN N3 N N N 164 TPN C4 C N N 165 TPN O4 O N N 166 TPN C5 C N N 167 TPN C5M C N N 168 TPN "H8'1" H N N 169 TPN "H8'2" H N N 170 TPN "H5'1" H N N 171 TPN "H5'2" H N N 172 TPN HXT H N N 173 TPN "H3'1" H N N 174 TPN "H3'2" H N N 175 TPN "H2'1" H N N 176 TPN "H2'2" H N N 177 TPN H H N N 178 TPN H2 H N N 179 TPN H3 H N N 180 TPN H6 H N N 181 TPN HN3 H N N 182 TPN HM51 H N N 183 TPN HM52 H N N 184 TPN HM53 H N N 185 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal APN "C8'" "C7'" sing N N 1 APN "C8'" N9 sing N N 2 APN "C8'" "H8'1" sing N N 3 APN "C8'" "H8'2" sing N N 4 APN "C7'" "O7'" doub N N 5 APN "C7'" "N4'" sing N N 6 APN "C5'" C sing N N 7 APN "C5'" "N4'" sing N N 8 APN "C5'" "H5'1" sing N N 9 APN "C5'" "H5'2" sing N N 10 APN C O doub N N 11 APN C OXT sing N N 12 APN OXT HXT sing N N 13 APN "N4'" "C3'" sing N N 14 APN "C3'" "C2'" sing N N 15 APN "C3'" "H3'1" sing N N 16 APN "C3'" "H3'2" sing N N 17 APN "C2'" N sing N N 18 APN "C2'" "H2'1" sing N N 19 APN "C2'" "H2'2" sing N N 20 APN N H sing N N 21 APN N H2 sing N N 22 APN N H3 sing N N 23 APN N9 C8 sing Y N 24 APN N9 C4 sing Y N 25 APN C8 N7 doub Y N 26 APN C8 H8 sing N N 27 APN N7 C5 sing Y N 28 APN C5 C6 sing Y N 29 APN C5 C4 doub Y N 30 APN C6 N6 sing N N 31 APN C6 N1 doub Y N 32 APN N6 HN61 sing N N 33 APN N6 HN62 sing N N 34 APN N1 C2 sing Y N 35 APN C2 N3 doub Y N 36 APN C2 H21 sing N N 37 APN N3 C4 sing Y N 38 CPN "C8'" "C7'" sing N N 39 CPN "C8'" N1 sing N N 40 CPN "C8'" "H8'1" sing N N 41 CPN "C8'" "H8'2" sing N N 42 CPN "C7'" "O7'" doub N N 43 CPN "C7'" "N4'" sing N N 44 CPN "C5'" C sing N N 45 CPN "C5'" "N4'" sing N N 46 CPN "C5'" "H5'1" sing N N 47 CPN "C5'" "H5'2" sing N N 48 CPN C O doub N N 49 CPN C OXT sing N N 50 CPN OXT HXT sing N N 51 CPN "N4'" "C3'" sing N N 52 CPN "C3'" "C2'" sing N N 53 CPN "C3'" "H3'1" sing N N 54 CPN "C3'" "H3'2" sing N N 55 CPN "C2'" N sing N N 56 CPN "C2'" "H2'1" sing N N 57 CPN "C2'" "H2'2" sing N N 58 CPN N H sing N N 59 CPN N H2 sing N N 60 CPN N H3 sing N N 61 CPN N1 C2 sing N N 62 CPN N1 C6 sing N N 63 CPN C2 N3 sing N N 64 CPN C2 O2 doub N N 65 CPN N3 C4 doub N N 66 CPN C4 C5 sing N N 67 CPN C4 N4 sing N N 68 CPN C5 C6 doub N N 69 CPN C5 H5 sing N N 70 CPN C6 H6 sing N N 71 CPN N4 HN41 sing N N 72 CPN N4 HN42 sing N N 73 EDO C1 O1 sing N N 74 EDO C1 C2 sing N N 75 EDO C1 H11 sing N N 76 EDO C1 H12 sing N N 77 EDO O1 HO1 sing N N 78 EDO C2 O2 sing N N 79 EDO C2 H21 sing N N 80 EDO C2 H22 sing N N 81 EDO O2 HO2 sing N N 82 GPN "C8'" "C7'" sing N N 83 GPN "C8'" N9 sing N N 84 GPN "C8'" "H8'1" sing N N 85 GPN "C8'" "H8'2" sing N N 86 GPN "C7'" "O7'" doub N N 87 GPN "C7'" "N4'" sing N N 88 GPN "C5'" C sing N N 89 GPN "C5'" "N4'" sing N N 90 GPN "C5'" "H5'1" sing N N 91 GPN "C5'" "H5'2" sing N N 92 GPN C O doub N N 93 GPN C OXT sing N N 94 GPN OXT HXT sing N N 95 GPN "N4'" "C3'" sing N N 96 GPN "C3'" "C2'" sing N N 97 GPN "C3'" "H3'1" sing N N 98 GPN "C3'" "H3'2" sing N N 99 GPN "C2'" N sing N N 100 GPN "C2'" "H2'1" sing N N 101 GPN "C2'" "H2'2" sing N N 102 GPN N H sing N N 103 GPN N H2 sing N N 104 GPN N H3 sing N N 105 GPN N9 C8 sing Y N 106 GPN N9 C4 sing Y N 107 GPN C8 N7 doub Y N 108 GPN C8 H8 sing N N 109 GPN N7 C5 sing Y N 110 GPN C5 C6 sing N N 111 GPN C5 C4 doub Y N 112 GPN C6 O6 doub N N 113 GPN C6 N1 sing N N 114 GPN N1 C2 sing N N 115 GPN N1 HN1 sing N N 116 GPN C2 N2 sing N N 117 GPN C2 N3 doub N N 118 GPN N2 HN21 sing N N 119 GPN N2 HN22 sing N N 120 GPN N3 C4 sing N N 121 HOH O H1 sing N N 122 HOH O H2 sing N N 123 LYS N CA sing N N 124 LYS N H sing N N 125 LYS N H2 sing N N 126 LYS CA C sing N N 127 LYS CA CB sing N N 128 LYS CA HA sing N N 129 LYS C O doub N N 130 LYS C OXT sing N N 131 LYS CB CG sing N N 132 LYS CB HB2 sing N N 133 LYS CB HB3 sing N N 134 LYS CG CD sing N N 135 LYS CG HG2 sing N N 136 LYS CG HG3 sing N N 137 LYS CD CE sing N N 138 LYS CD HD2 sing N N 139 LYS CD HD3 sing N N 140 LYS CE NZ sing N N 141 LYS CE HE2 sing N N 142 LYS CE HE3 sing N N 143 LYS NZ HZ1 sing N N 144 LYS NZ HZ2 sing N N 145 LYS NZ HZ3 sing N N 146 LYS OXT HXT sing N N 147 TPN "C8'" "C7'" sing N N 148 TPN "C8'" N1 sing N N 149 TPN "C8'" "H8'1" sing N N 150 TPN "C8'" "H8'2" sing N N 151 TPN "C7'" "O7'" doub N N 152 TPN "C7'" "N4'" sing N N 153 TPN "C5'" C sing N N 154 TPN "C5'" "N4'" sing N N 155 TPN "C5'" "H5'1" sing N N 156 TPN "C5'" "H5'2" sing N N 157 TPN C O doub N N 158 TPN C OXT sing N N 159 TPN OXT HXT sing N N 160 TPN "N4'" "C3'" sing N N 161 TPN "C3'" "C2'" sing N N 162 TPN "C3'" "H3'1" sing N N 163 TPN "C3'" "H3'2" sing N N 164 TPN "C2'" N sing N N 165 TPN "C2'" "H2'1" sing N N 166 TPN "C2'" "H2'2" sing N N 167 TPN N H sing N N 168 TPN N H2 sing N N 169 TPN N H3 sing N N 170 TPN N1 C6 sing N N 171 TPN N1 C2 sing N N 172 TPN C6 C5 doub N N 173 TPN C6 H6 sing N N 174 TPN C2 O2 doub N N 175 TPN C2 N3 sing N N 176 TPN N3 C4 sing N N 177 TPN N3 HN3 sing N N 178 TPN C4 O4 doub N N 179 TPN C4 C5 sing N N 180 TPN C5 C5M sing N N 181 TPN C5M HM51 sing N N 182 TPN C5M HM52 sing N N 183 TPN C5M HM53 sing N N 184 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3MBS 'double helix' 3MBS 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GPN 1 1_555 B CPN 8 1_555 0.187 -0.186 0.257 5.009 0.969 1.444 1 A_GPN1001:CPN2008_B A 1001 ? B 2008 ? 19 1 1 A GPN 2 1_555 B CPN 7 1_555 0.165 -0.143 0.006 0.347 2.654 -0.442 2 A_GPN1002:CPN2007_B A 1002 ? B 2007 ? 19 1 1 A CPN 3 1_555 B GPN 6 1_555 -0.078 -0.123 0.024 -1.698 2.980 1.544 3 A_CPN1003:GPN2006_B A 1003 ? B 2006 ? 19 1 1 A APN 4 1_555 B TPN 5 1_555 -0.086 -0.114 0.168 0.908 10.108 -2.510 4 A_APN1004:TPN2005_B A 1004 ? B 2005 ? 20 1 1 A TPN 5 1_555 B APN 4 1_555 0.105 -0.079 0.223 -4.284 10.173 -2.640 5 A_TPN1005:APN2004_B A 1005 ? B 2004 ? 20 1 1 A GPN 6 1_555 B CPN 3 1_555 0.160 -0.170 0.074 0.797 3.406 3.522 6 A_GPN1006:CPN2003_B A 1006 ? B 2003 ? 19 1 1 A CPN 7 1_555 B GPN 2 1_555 -0.169 -0.156 0.037 -1.462 1.864 0.443 7 A_CPN1007:GPN2002_B A 1007 ? B 2002 ? 19 1 1 A CPN 8 1_555 B GPN 1 1_555 -0.316 -0.143 0.199 -5.476 -1.681 2.002 8 A_CPN1008:GPN2001_B A 1008 ? B 2001 ? 19 1 1 C GPN 1 1_555 D CPN 8 1_555 -0.193 -0.172 0.232 6.828 0.741 -1.247 9 C_GPN3001:CPN4008_D C 3001 ? D 4008 ? 19 1 1 C GPN 2 1_555 D CPN 7 1_555 -0.172 -0.132 -0.007 -1.720 -1.822 -0.243 10 C_GPN3002:CPN4007_D C 3002 ? D 4007 ? 19 1 1 C CPN 3 1_555 D GPN 6 1_555 0.069 -0.138 0.060 -1.180 -2.304 -2.035 11 C_CPN3003:GPN4006_D C 3003 ? D 4006 ? 19 1 1 C APN 4 1_555 D TPN 5 1_555 0.137 -0.111 0.133 2.485 -9.963 1.517 12 C_APN3004:TPN4005_D C 3004 ? D 4005 ? 20 1 1 C TPN 5 1_555 D APN 4 1_555 -0.069 -0.128 0.198 -1.938 -9.962 3.219 13 C_TPN3005:APN4004_D C 3005 ? D 4004 ? 20 1 1 C GPN 6 1_555 D CPN 3 1_555 -0.136 -0.140 0.090 1.806 -3.884 -2.457 14 C_GPN3006:CPN4003_D C 3006 ? D 4003 ? 19 1 1 C CPN 7 1_555 D GPN 2 1_555 0.233 -0.119 0.059 -0.681 -1.990 -0.526 15 C_CPN3007:GPN4002_D C 3007 ? D 4002 ? 19 1 1 C CPN 8 1_555 D GPN 1 1_555 0.320 -0.088 0.160 -9.780 2.217 -1.190 16 C_CPN3008:GPN4001_D C 3008 ? D 4001 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GPN 1 1_555 B CPN 8 1_555 A GPN 2 1_555 B CPN 7 1_555 -0.484 -2.762 3.371 0.134 0.474 -20.230 7.638 -1.314 3.437 -1.350 0.380 -20.236 1 AA_GPN1001GPN1002:CPN2007CPN2008_BB A 1001 ? B 2008 ? A 1002 ? B 2007 ? 1 A GPN 2 1_555 B CPN 7 1_555 A CPN 3 1_555 B GPN 6 1_555 0.499 -2.866 3.337 -0.137 1.904 -19.446 7.457 1.398 3.602 -5.620 -0.405 -19.539 2 AA_GPN1002CPN1003:GPN2006CPN2007_BB A 1002 ? B 2007 ? A 1003 ? B 2006 ? 1 A CPN 3 1_555 B GPN 6 1_555 A APN 4 1_555 B TPN 5 1_555 -0.272 -1.993 3.156 -1.126 -3.490 -17.797 8.095 -1.437 2.696 11.127 -3.589 -18.167 3 AA_CPN1003APN1004:TPN2005GPN2006_BB A 1003 ? B 2006 ? A 1004 ? B 2005 ? 1 A APN 4 1_555 B TPN 5 1_555 A TPN 5 1_555 B APN 4 1_555 0.173 -2.838 3.377 0.059 0.071 -20.349 7.998 0.516 3.386 -0.201 0.167 -20.349 4 AA_APN1004TPN1005:APN2004TPN2005_BB A 1004 ? B 2005 ? A 1005 ? B 2004 ? 1 A TPN 5 1_555 B APN 4 1_555 A GPN 6 1_555 B CPN 3 1_555 0.467 -2.047 3.084 1.547 -4.330 -16.927 8.973 2.337 2.435 14.369 5.132 -17.536 5 AA_TPN1005GPN1006:CPN2003APN2004_BB A 1005 ? B 2004 ? A 1006 ? B 2003 ? 1 A GPN 6 1_555 B CPN 3 1_555 A CPN 7 1_555 B GPN 2 1_555 -0.463 -2.806 3.337 0.364 0.910 -19.869 7.676 -1.161 3.468 -2.636 1.053 -19.893 6 AA_GPN1006CPN1007:GPN2002CPN2003_BB A 1006 ? B 2003 ? A 1007 ? B 2002 ? 1 A CPN 7 1_555 B GPN 2 1_555 A CPN 8 1_555 B GPN 1 1_555 0.230 -2.871 3.370 0.273 2.128 -19.421 7.339 0.823 3.657 -6.284 0.805 -19.538 7 AA_CPN1007CPN1008:GPN2001GPN2002_BB A 1007 ? B 2002 ? A 1008 ? B 2001 ? 1 C GPN 1 1_555 D CPN 8 1_555 C GPN 2 1_555 D CPN 7 1_555 0.155 -2.929 3.444 0.125 -0.107 18.183 -9.204 -0.416 3.462 -0.338 -0.394 18.184 8 CC_GPN3001GPN3002:CPN4007CPN4008_DD C 3001 ? D 4008 ? C 3002 ? D 4007 ? 1 C GPN 2 1_555 D CPN 7 1_555 C CPN 3 1_555 D GPN 6 1_555 -0.357 -2.817 3.301 -1.140 -2.951 19.576 -6.676 0.455 3.695 -8.606 3.326 19.827 9 CC_GPN3002CPN3003:GPN4006CPN4007_DD C 3002 ? D 4007 ? C 3003 ? D 4006 ? 1 C CPN 3 1_555 D GPN 6 1_555 C APN 4 1_555 D TPN 5 1_555 0.360 -2.062 3.099 -1.769 5.471 18.301 -8.553 -1.846 2.343 16.674 5.392 19.176 10 CC_CPN3003APN3004:TPN4005GPN4006_DD C 3003 ? D 4006 ? C 3004 ? D 4005 ? 1 C APN 4 1_555 D TPN 5 1_555 C TPN 5 1_555 D APN 4 1_555 0.217 -2.875 3.350 -0.877 -2.191 20.075 -7.122 -1.045 3.627 -6.256 2.504 20.212 11 CC_APN3004TPN3005:APN4004TPN4005_DD C 3004 ? D 4005 ? C 3005 ? D 4004 ? 1 C TPN 5 1_555 D APN 4 1_555 C GPN 6 1_555 D CPN 3 1_555 -0.305 -2.052 3.091 2.211 4.838 17.690 -8.662 1.987 2.392 15.290 -6.987 18.466 12 CC_TPN3005GPN3006:CPN4003APN4004_DD C 3005 ? D 4004 ? C 3006 ? D 4003 ? 1 C GPN 6 1_555 D CPN 3 1_555 C CPN 7 1_555 D GPN 2 1_555 0.477 -2.883 3.335 -0.400 -2.110 19.807 -7.278 -1.578 3.608 -6.111 1.157 19.921 13 CC_GPN3006CPN3007:GPN4002CPN4003_DD C 3006 ? D 4003 ? C 3007 ? D 4002 ? 1 C CPN 7 1_555 D GPN 2 1_555 C CPN 8 1_555 D GPN 1 1_555 -0.467 -2.796 3.548 0.737 -1.958 20.127 -6.958 1.707 3.781 -5.583 -2.102 20.234 14 CC_CPN3007CPN3008:GPN4001GPN4002_DD C 3007 ? D 4002 ? C 3008 ? D 4001 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH #