HEADER OXIDOREDUCTASE 29-MAR-10 3MCR TITLE CRYSTAL STRUCTURE OF NADH DEHYDROGENASE SUBUNIT C (TFU_2693) FROM TITLE 2 THERMOBIFIDA FUSCA YX-ER1 AT 2.65 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADH DEHYDROGENASE, SUBUNIT C; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBIFIDA FUSCA; SOURCE 3 ORGANISM_TAXID: 269800; SOURCE 4 STRAIN: YX; SOURCE 5 GENE: TFU_2693; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 20-SEP-23 3MCR 1 REMARK REVDAT 5 01-FEB-23 3MCR 1 REMARK SEQADV LINK REVDAT 4 17-JUL-19 3MCR 1 REMARK REVDAT 3 08-NOV-17 3MCR 1 REMARK REVDAT 2 13-JUL-11 3MCR 1 VERSN REVDAT 1 12-MAY-10 3MCR 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF NADH DEHYDROGENASE SUBUNIT C (TFU_2693) JRNL TITL 2 FROM THERMOBIFIDA FUSCA YX-ER1 AT 2.65 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 8568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 402 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 585 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.4350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1222 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 82.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.75000 REMARK 3 B22 (A**2) : 1.75000 REMARK 3 B33 (A**2) : -3.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.352 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.273 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.206 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.045 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1283 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 853 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1758 ; 1.410 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2061 ; 0.967 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 157 ; 2.987 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 68 ;29.209 ;23.235 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 179 ;11.558 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;11.895 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 191 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1457 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 276 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 780 ; 1.087 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 307 ; 0.174 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1269 ; 2.126 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 503 ; 3.605 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 487 ; 5.754 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): 53.5360 41.0403 31.0986 REMARK 3 T TENSOR REMARK 3 T11: 0.3335 T22: 0.2358 REMARK 3 T33: 0.2211 T12: 0.0136 REMARK 3 T13: -0.0040 T23: -0.0439 REMARK 3 L TENSOR REMARK 3 L11: 2.9653 L22: 1.9070 REMARK 3 L33: 2.7202 L12: 1.0644 REMARK 3 L13: 0.7181 L23: 1.2701 REMARK 3 S TENSOR REMARK 3 S11: -0.0534 S12: -0.0611 S13: 0.2599 REMARK 3 S21: -0.1365 S22: 0.0924 S23: -0.0751 REMARK 3 S31: -0.1782 S32: 0.1546 S33: -0.0390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY REMARK 3 3.COBALT (CO) AND 1,6-HEXANEDIOL (HEZ) FROM THE CRYSTALLIZATION REMARK 3 SOLUTION WERE MODELED INTO THE STRUCTURE. THE MODELING OF COBALT REMARK 3 IS SUPPORTED BY ANOMALOUS DIFFERENCE MAPS. 4. THE ELECTRON REMARK 3 DENSITY CORRESPONDING TO THE N-TERMINAL 59 RESIDUES WAS REMARK 3 DISORDERED AND THIS REGION COULD NOT BE MODELED. REMARK 4 REMARK 4 3MCR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058387. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97922 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8611 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 48.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.950 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.81000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2FUG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0000M 1,6-HEXANEDIOL, 0.0100M COCL2, REMARK 280 0.1M ACETATE PH 4.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.10500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.63200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.63200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.65750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.63200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.63200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.55250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.63200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.63200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 85.65750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.63200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.63200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.55250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.10500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 69.26400 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 69.26400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 57.10500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CO CO A 213 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 5 REMARK 465 GLN A 6 REMARK 465 GLN A 7 REMARK 465 GLY A 8 REMARK 465 LYS A 9 REMARK 465 PRO A 10 REMARK 465 ASN A 11 REMARK 465 LEU A 12 REMARK 465 PRO A 13 REMARK 465 GLU A 14 REMARK 465 LYS A 15 REMARK 465 ASP A 16 REMARK 465 ASN A 17 REMARK 465 LEU A 18 REMARK 465 PRO A 19 REMARK 465 ARG A 20 REMARK 465 GLU A 21 REMARK 465 LEU A 22 REMARK 465 GLY A 23 REMARK 465 THR A 24 REMARK 465 GLN A 25 REMARK 465 ARG A 26 REMARK 465 ILE A 27 REMARK 465 ASN A 28 REMARK 465 SER A 29 REMARK 465 PRO A 30 REMARK 465 ILE A 31 REMARK 465 ALA A 32 REMARK 465 ARG A 33 REMARK 465 MET A 34 REMARK 465 GLY A 35 REMARK 465 MET A 36 REMARK 465 PHE A 37 REMARK 465 GLY A 38 REMARK 465 ALA A 39 REMARK 465 LYS A 40 REMARK 465 THR A 41 REMARK 465 THR A 42 REMARK 465 GLY A 43 REMARK 465 ASP A 44 REMARK 465 THR A 45 REMARK 465 SER A 46 REMARK 465 GLY A 47 REMARK 465 TYR A 48 REMARK 465 GLY A 49 REMARK 465 ARG A 50 REMARK 465 LEU A 51 REMARK 465 ARG A 52 REMARK 465 VAL A 53 REMARK 465 TYR A 54 REMARK 465 ARG A 55 REMARK 465 HIS A 56 REMARK 465 VAL A 57 REMARK 465 ARG A 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 84 CG CD OE1 OE2 REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 100 144.30 -171.16 REMARK 500 ASN A 149 46.25 -142.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 213 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 ASP A 174 OD2 137.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEZ A 214 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 372019 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 1-212 OF THE FULL LENGTH REMARK 999 (252 AMINO ACID) TARGET SEQUENCE. DBREF 3MCR A 1 212 UNP Q47LE6 Q47LE6_THEFY 1 212 SEQADV 3MCR GLY A 0 UNP Q47LE6 EXPRESSION TAG SEQRES 1 A 213 GLY MET THR SER ASN GLY GLN GLN GLY LYS PRO ASN LEU SEQRES 2 A 213 PRO GLU LYS ASP ASN LEU PRO ARG GLU LEU GLY THR GLN SEQRES 3 A 213 ARG ILE ASN SER PRO ILE ALA ARG MET GLY MET PHE GLY SEQRES 4 A 213 ALA LYS THR THR GLY ASP THR SER GLY TYR GLY ARG LEU SEQRES 5 A 213 ARG VAL TYR ARG HIS VAL PRO ALA ALA ALA GLN ARG PRO SEQRES 6 A 213 TYR SER ASP PRO SER ASP PRO ARG THR ALA TYR PHE ASP SEQRES 7 A 213 GLU VAL ALA ASP ALA LEU GLU ARG SER LEU LYS GLU ILE SEQRES 8 A 213 GLY THR PRO TYR ASP THR ALA ILE SER ARG VAL VAL VAL SEQRES 9 A 213 ASP ARG GLY GLU ILE THR PHE HIS VAL GLN ARG GLU HIS SEQRES 10 A 213 LEU LEU ASP VAL ALA THR ARG LEU ARG ASP ASP PRO ALA SEQRES 11 A 213 LEU ARG PHE GLU LEU CYS LEU GLY VAL THR GLY VAL HIS SEQRES 12 A 213 TYR PRO GLU ASP GLU GLY ASN GLU LEU HIS ALA VAL TYR SEQRES 13 A 213 ALA LEU ARG SER ILE THR HIS ASN TYR GLU ILE ARG LEU SEQRES 14 A 213 GLU VAL SER CYS PRO ASP SER ASP PRO HIS ILE PRO SER SEQRES 15 A 213 ILE VAL SER VAL TYR PRO THR ASN ASP TRP HIS GLU ARG SEQRES 16 A 213 GLU ALA TRP ASP PHE PHE GLY ILE ILE PHE ASP GLY HIS SEQRES 17 A 213 PRO ALA LEU THR ARG HET CO A 213 1 HET HEZ A 214 8 HETNAM CO COBALT (II) ION HETNAM HEZ HEXANE-1,6-DIOL FORMUL 2 CO CO 2+ FORMUL 3 HEZ C6 H14 O2 FORMUL 4 HOH *6(H2 O) HELIX 1 1 ASP A 70 ALA A 74 5 5 HELIX 2 2 TYR A 75 ILE A 90 1 16 HELIX 3 3 PRO A 93 ALA A 97 1 5 HELIX 4 4 HIS A 116 ASP A 127 1 12 HELIX 5 5 THR A 188 GLY A 201 1 14 HELIX 6 6 HIS A 207 THR A 211 5 5 SHEET 1 A 5 ILE A 98 ASP A 104 0 SHEET 2 A 5 GLU A 107 VAL A 112 -1 O HIS A 111 N ARG A 100 SHEET 3 A 5 TYR A 164 CYS A 172 1 O ARG A 167 N PHE A 110 SHEET 4 A 5 LEU A 151 SER A 159 -1 N LEU A 157 O ILE A 166 SHEET 5 A 5 LEU A 134 HIS A 142 -1 N THR A 139 O VAL A 154 SHEET 1 B 2 HIS A 178 PRO A 180 0 SHEET 2 B 2 ILE A 203 ASP A 205 1 O ILE A 203 N ILE A 179 LINK NE2 HIS A 142 CO CO A 213 1555 1555 2.15 LINK OD2 ASP A 174 CO CO A 213 1555 1555 1.79 CISPEP 1 ARG A 63 PRO A 64 0 0.59 SITE 1 AC1 2 HIS A 142 ASP A 174 SITE 1 AC2 4 GLY A 140 PHE A 199 PHE A 200 HOH A 220 CRYST1 69.264 69.264 114.210 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014438 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014438 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008756 0.00000