data_3MD4 # _entry.id 3MD4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3MD4 pdb_00003md4 10.2210/pdb3md4/pdb RCSB RCSB058399 ? ? WWPDB D_1000058399 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-05-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 3MD4 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-03-29 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yee, V.C.' 1 'Lee, S.' 2 # _citation.id primary _citation.title 'Diversity in the cross-beta spine structure of prion peptides' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lee, S.' 1 ? primary 'Yee, V.C.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Major prion protein' 626.724 2 ? ? 'PrP 127-132' 'Prion peptide' 2 water nat water 18.015 9 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name PrP # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GYMLGS _entity_poly.pdbx_seq_one_letter_code_can GYMLGS _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 TYR n 1 3 MET n 1 4 LEU n 1 5 GLY n 1 6 SER n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthetic peptide' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 127 127 GLY GLY A . n A 1 2 TYR 2 128 128 TYR TYR A . n A 1 3 MET 3 129 129 MET MET A . n A 1 4 LEU 4 130 130 LEU LEU A . n A 1 5 GLY 5 131 131 GLY GLY A . n A 1 6 SER 6 132 132 SER SER A . n B 1 1 GLY 1 127 127 GLY GLY B . n B 1 2 TYR 2 128 128 TYR TYR B . n B 1 3 MET 3 129 129 MET MET B . n B 1 4 LEU 4 130 130 LEU LEU B . n B 1 5 GLY 5 131 131 GLY GLY B . n B 1 6 SER 6 132 132 SER SER B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 6 6 HOH HOH A . C 2 HOH 2 7 7 HOH HOH A . C 2 HOH 3 8 8 HOH HOH A . C 2 HOH 4 9 9 HOH HOH A . D 2 HOH 1 1 1 HOH HOH B . D 2 HOH 2 2 2 HOH HOH B . D 2 HOH 3 3 3 HOH HOH B . D 2 HOH 4 4 4 HOH HOH B . D 2 HOH 5 5 5 HOH HOH B . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 REFMAC 5.5.0088 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.100 'Jan. 22, 2010' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _cell.length_a 9.439 _cell.length_b 17.792 _cell.length_c 44.561 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3MD4 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3MD4 _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3MD4 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.49 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 17.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1 M HEPES pH 7.5, 2.0 M ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-03-31 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91840 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.91840 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3MD4 _reflns.d_resolution_high 1.150 _reflns.d_resolution_low 50.000 _reflns.number_obs 2627 _reflns.pdbx_Rmerge_I_obs 0.102 _reflns.pdbx_netI_over_sigmaI 11.100 _reflns.pdbx_chi_squared 1.001 _reflns.pdbx_redundancy 5.600 _reflns.percent_possible_obs 87.600 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.15 1.19 ? ? ? 0.186 ? ? 1.094 3.00 ? 197 65.20 1 1 1.19 1.24 ? ? ? 0.171 ? ? 0.981 3.20 ? 201 75.80 2 1 1.24 1.30 ? ? ? 0.159 ? ? 1.130 3.90 ? 240 80.30 3 1 1.30 1.36 ? ? ? 0.160 ? ? 1.064 4.40 ? 238 81.00 4 1 1.36 1.45 ? ? ? 0.148 ? ? 0.952 5.20 ? 266 95.00 5 1 1.45 1.56 ? ? ? 0.120 ? ? 0.959 5.70 ? 289 96.30 6 1 1.56 1.72 ? ? ? 0.118 ? ? 0.937 6.40 ? 275 95.20 7 1 1.72 1.97 ? ? ? 0.107 ? ? 0.971 6.90 ? 298 96.10 8 1 1.97 2.48 ? ? ? 0.083 ? ? 0.977 7.50 ? 307 99.00 9 1 2.48 50.00 ? ? ? 0.081 ? ? 1.070 7.20 ? 316 90.50 10 1 # _refine.entry_id 3MD4 _refine.ls_d_res_high 1.150 _refine.ls_d_res_low 22.280 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 87.830 _refine.ls_number_reflns_obs 2612 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.150 _refine.ls_R_factor_R_work 0.149 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.169 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.400 _refine.ls_number_reflns_R_free 116 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 6.768 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.330 _refine.aniso_B[2][2] 0.360 _refine.aniso_B[3][3] -0.030 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.966 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.046 _refine.pdbx_overall_ESU_R_Free 0.042 _refine.overall_SU_ML 0.024 _refine.overall_SU_B 1.155 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 30.33 _refine.B_iso_min 2.00 _refine.occupancy_max 1.00 _refine.occupancy_min 0.40 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 86 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 9 _refine_hist.number_atoms_total 95 _refine_hist.d_res_high 1.150 _refine_hist.d_res_low 22.280 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 92 0.015 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 121 1.454 2.103 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 12 4.404 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 2 2.937 20.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17 10.670 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 11 0.125 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 68 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 59 1.839 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 88 2.939 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 33 3.258 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 32 4.156 4.500 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 92 1.508 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_free 12 9.673 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 91 5.066 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.150 _refine_ls_shell.d_res_low 1.180 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 60.590 _refine_ls_shell.number_reflns_R_work 136 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.150 _refine_ls_shell.R_factor_R_free 0.206 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 7 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 143 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3MD4 _struct.title 'Prion peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MD4 _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text ;Prion peptide, Amyloid, Cell membrane, Disulfide bond, Glycoprotein, Golgi apparatus, GPI-anchor, Lipoprotein, Membrane, Prion, MEMBRANE PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PRIO_HUMAN _struct_ref.pdbx_db_accession P04156 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GYMLGS _struct_ref.pdbx_align_begin 127 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3MD4 A 1 ? 6 ? P04156 127 ? 132 ? 127 132 2 1 3MD4 B 1 ? 6 ? P04156 127 ? 132 ? 127 132 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 3 'ABSA (A^2)' 370 ? 3 MORE -2 ? 3 'SSA (A^2)' 1490 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D 3 1 A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'Two molecules in the asymmetric unit, but the biological unit is believed to be a monomer' # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 2 ? GLY A 5 ? TYR A 128 GLY A 131 A 2 TYR B 2 ? GLY B 5 ? TYR B 128 GLY B 131 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id MET _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 3 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id MET _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 129 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id LEU _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 4 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id LEU _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 130 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal GLY N N N N 1 GLY CA C N N 2 GLY C C N N 3 GLY O O N N 4 GLY OXT O N N 5 GLY H H N N 6 GLY H2 H N N 7 GLY HA2 H N N 8 GLY HA3 H N N 9 GLY HXT H N N 10 HOH O O N N 11 HOH H1 H N N 12 HOH H2 H N N 13 LEU N N N N 14 LEU CA C N S 15 LEU C C N N 16 LEU O O N N 17 LEU CB C N N 18 LEU CG C N N 19 LEU CD1 C N N 20 LEU CD2 C N N 21 LEU OXT O N N 22 LEU H H N N 23 LEU H2 H N N 24 LEU HA H N N 25 LEU HB2 H N N 26 LEU HB3 H N N 27 LEU HG H N N 28 LEU HD11 H N N 29 LEU HD12 H N N 30 LEU HD13 H N N 31 LEU HD21 H N N 32 LEU HD22 H N N 33 LEU HD23 H N N 34 LEU HXT H N N 35 MET N N N N 36 MET CA C N S 37 MET C C N N 38 MET O O N N 39 MET CB C N N 40 MET CG C N N 41 MET SD S N N 42 MET CE C N N 43 MET OXT O N N 44 MET H H N N 45 MET H2 H N N 46 MET HA H N N 47 MET HB2 H N N 48 MET HB3 H N N 49 MET HG2 H N N 50 MET HG3 H N N 51 MET HE1 H N N 52 MET HE2 H N N 53 MET HE3 H N N 54 MET HXT H N N 55 SER N N N N 56 SER CA C N S 57 SER C C N N 58 SER O O N N 59 SER CB C N N 60 SER OG O N N 61 SER OXT O N N 62 SER H H N N 63 SER H2 H N N 64 SER HA H N N 65 SER HB2 H N N 66 SER HB3 H N N 67 SER HG H N N 68 SER HXT H N N 69 TYR N N N N 70 TYR CA C N S 71 TYR C C N N 72 TYR O O N N 73 TYR CB C N N 74 TYR CG C Y N 75 TYR CD1 C Y N 76 TYR CD2 C Y N 77 TYR CE1 C Y N 78 TYR CE2 C Y N 79 TYR CZ C Y N 80 TYR OH O N N 81 TYR OXT O N N 82 TYR H H N N 83 TYR H2 H N N 84 TYR HA H N N 85 TYR HB2 H N N 86 TYR HB3 H N N 87 TYR HD1 H N N 88 TYR HD2 H N N 89 TYR HE1 H N N 90 TYR HE2 H N N 91 TYR HH H N N 92 TYR HXT H N N 93 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLY N CA sing N N 1 GLY N H sing N N 2 GLY N H2 sing N N 3 GLY CA C sing N N 4 GLY CA HA2 sing N N 5 GLY CA HA3 sing N N 6 GLY C O doub N N 7 GLY C OXT sing N N 8 GLY OXT HXT sing N N 9 HOH O H1 sing N N 10 HOH O H2 sing N N 11 LEU N CA sing N N 12 LEU N H sing N N 13 LEU N H2 sing N N 14 LEU CA C sing N N 15 LEU CA CB sing N N 16 LEU CA HA sing N N 17 LEU C O doub N N 18 LEU C OXT sing N N 19 LEU CB CG sing N N 20 LEU CB HB2 sing N N 21 LEU CB HB3 sing N N 22 LEU CG CD1 sing N N 23 LEU CG CD2 sing N N 24 LEU CG HG sing N N 25 LEU CD1 HD11 sing N N 26 LEU CD1 HD12 sing N N 27 LEU CD1 HD13 sing N N 28 LEU CD2 HD21 sing N N 29 LEU CD2 HD22 sing N N 30 LEU CD2 HD23 sing N N 31 LEU OXT HXT sing N N 32 MET N CA sing N N 33 MET N H sing N N 34 MET N H2 sing N N 35 MET CA C sing N N 36 MET CA CB sing N N 37 MET CA HA sing N N 38 MET C O doub N N 39 MET C OXT sing N N 40 MET CB CG sing N N 41 MET CB HB2 sing N N 42 MET CB HB3 sing N N 43 MET CG SD sing N N 44 MET CG HG2 sing N N 45 MET CG HG3 sing N N 46 MET SD CE sing N N 47 MET CE HE1 sing N N 48 MET CE HE2 sing N N 49 MET CE HE3 sing N N 50 MET OXT HXT sing N N 51 SER N CA sing N N 52 SER N H sing N N 53 SER N H2 sing N N 54 SER CA C sing N N 55 SER CA CB sing N N 56 SER CA HA sing N N 57 SER C O doub N N 58 SER C OXT sing N N 59 SER CB OG sing N N 60 SER CB HB2 sing N N 61 SER CB HB3 sing N N 62 SER OG HG sing N N 63 SER OXT HXT sing N N 64 TYR N CA sing N N 65 TYR N H sing N N 66 TYR N H2 sing N N 67 TYR CA C sing N N 68 TYR CA CB sing N N 69 TYR CA HA sing N N 70 TYR C O doub N N 71 TYR C OXT sing N N 72 TYR CB CG sing N N 73 TYR CB HB2 sing N N 74 TYR CB HB3 sing N N 75 TYR CG CD1 doub Y N 76 TYR CG CD2 sing Y N 77 TYR CD1 CE1 sing Y N 78 TYR CD1 HD1 sing N N 79 TYR CD2 CE2 doub Y N 80 TYR CD2 HD2 sing N N 81 TYR CE1 CZ doub Y N 82 TYR CE1 HE1 sing N N 83 TYR CE2 CZ sing Y N 84 TYR CE2 HE2 sing N N 85 TYR CZ OH sing N N 86 TYR OH HH sing N N 87 TYR OXT HXT sing N N 88 # _atom_sites.entry_id 3MD4 _atom_sites.fract_transf_matrix[1][1] 0.105943 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.056205 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022441 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_