HEADER LYASE,TRANSFERASE/DNA 30-MAR-10 3MDA TITLE DNA POLYMERASE LAMBDA IN COMPLEX WITH ARAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE LAMBDA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL LAMBDA, DNA POLYMERASE KAPPA, DNA POLYMERASE BETA-2, POL COMPND 5 BETA2; COMPND 6 EC: 2.7.7.7, 4.2.99.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3'); COMPND 10 CHAIN: T; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*CP*AP*GP*TP*AP*CP*(CAR))-3'); COMPND 14 CHAIN: P; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: DNA (5'-D(P*GP*CP*CP*G)-3'); COMPND 18 CHAIN: D; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THE DNA FRAGMENT IS CHEMICALLY SYNTHESIZED.; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: THE DNA FRAGMENT IS CHEMICALLY SYNTHESIZED.; SOURCE 17 MOL_ID: 4; SOURCE 18 SYNTHETIC: YES; SOURCE 19 OTHER_DETAILS: THE DNA FRAGMENT IS CHEMICALLY SYNTHESIZED. KEYWDS PROTEIN-DNA COMPLEX, LYASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.GARCIA-DIAZ,M.MURRAY,T.KUNKEL,K.M.CHOU REVDAT 4 21-FEB-24 3MDA 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3MDA 1 REMARK REVDAT 2 09-JUN-10 3MDA 1 JRNL REVDAT 1 28-APR-10 3MDA 0 JRNL AUTH M.GARCIA-DIAZ,M.S.MURRAY,T.A.KUNKEL,K.M.CHOU JRNL TITL INTERACTION BETWEEN DNA POLYMERASE LAMBDA AND ANTICANCER JRNL TITL 2 NUCLEOSIDE ANALOGS. JRNL REF J.BIOL.CHEM. V. 285 16874 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20348107 JRNL DOI 10.1074/JBC.M109.094391 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 3 NUMBER OF REFLECTIONS : 28398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1408 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.5680 - 4.3720 0.99 3288 147 0.1820 0.2540 REMARK 3 2 4.3720 - 3.4720 0.99 3121 173 0.1650 0.2160 REMARK 3 3 3.4720 - 3.0330 0.96 3026 137 0.1880 0.2410 REMARK 3 4 3.0330 - 2.7560 0.92 2874 131 0.2070 0.2660 REMARK 3 5 2.7560 - 2.5590 0.90 2742 147 0.2150 0.2880 REMARK 3 6 2.5590 - 2.4080 0.85 2597 162 0.2100 0.2770 REMARK 3 7 2.4080 - 2.2870 0.83 2551 144 0.2140 0.2890 REMARK 3 8 2.2870 - 2.1880 0.80 2408 133 0.2230 0.2760 REMARK 3 9 2.1880 - 2.1040 0.77 2362 111 0.2380 0.2750 REMARK 3 10 2.1040 - 2.0310 0.66 2021 123 0.2740 0.2980 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 51.23 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.51000 REMARK 3 B22 (A**2) : 9.96500 REMARK 3 B33 (A**2) : -1.45500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3087 REMARK 3 ANGLE : 1.111 4260 REMARK 3 CHIRALITY : 0.062 463 REMARK 3 PLANARITY : 0.004 476 REMARK 3 DIHEDRAL : 19.236 1181 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MDA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.504 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52786 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2-PROPANOL, PH 5.5, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.03400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.08150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.31850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.08150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.03400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.31850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 252 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 VAL A 293 CG1 CG2 REMARK 470 THR A 294 OG1 CG2 REMARK 470 GLN A 297 CG CD OE1 NE2 REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 470 CYS A 543 SG REMARK 470 VAL A 545 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 234 O HOH P 209 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 1 P DG D 1 OP3 -0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC T 1 O4' - C1' - N1 ANGL. DEV. = -4.6 DEGREES REMARK 500 DG T 2 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DG T 2 O4' - C1' - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 DG T 5 O4' - C1' - N9 ANGL. DEV. = -6.4 DEGREES REMARK 500 DT T 10 O4' - C1' - N1 ANGL. DEV. = -7.5 DEGREES REMARK 500 CAR P 7 O3' - P - OP2 ANGL. DEV. = 23.4 DEGREES REMARK 500 DG D 4 O5' - C5' - C4' ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 292 106.93 -56.70 REMARK 500 CYS A 415 -137.38 -114.95 REMARK 500 ARG A 438 -23.89 -140.37 REMARK 500 SER A 463 89.75 -172.01 REMARK 500 SER A 509 -177.54 -69.21 REMARK 500 ASN A 539 -168.67 -79.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 1 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 339 O REMARK 620 2 ILE A 341 O 97.6 REMARK 620 3 ALA A 344 O 86.3 88.5 REMARK 620 4 HOH A 579 O 90.6 91.0 176.8 REMARK 620 5 DA P 5 OP1 161.5 100.8 95.7 87.5 REMARK 620 6 HOH P 8 O 71.7 168.3 85.9 94.0 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 4 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 66 O REMARK 620 2 SER A 463 O 83.7 REMARK 620 3 HOH A 599 O 93.2 159.7 REMARK 620 4 HOH T 76 O 101.9 96.4 103.9 REMARK 620 5 HOH T 145 O 157.8 82.9 93.2 97.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 577 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD1 REMARK 620 2 ASP A 429 OD2 96.9 REMARK 620 3 PPV A 576 O31 163.1 97.3 REMARK 620 4 PPV A 576 O22 83.6 164.5 85.1 REMARK 620 5 HOH A 585 O 91.5 88.4 79.9 107.1 REMARK 620 6 CAR P 7 OP1 76.1 76.5 116.2 88.7 158.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPV A 576 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 577 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MDC RELATED DB: PDB DBREF 3MDA A 252 575 UNP Q9UGP5 DPOLL_HUMAN 252 575 DBREF 3MDA T 1 11 PDB 3MDA 3MDA 1 11 DBREF 3MDA P 1 7 PDB 3MDA 3MDA 1 7 DBREF 3MDA D 1 4 PDB 3MDA 3MDA 1 4 SEQADV 3MDA ALA A 251 UNP Q9UGP5 EXPRESSION TAG SEQRES 1 A 325 ALA HIS ASN LEU HIS ILE THR GLU LYS LEU GLU VAL LEU SEQRES 2 A 325 ALA LYS ALA TYR SER VAL GLN GLY ASP LYS TRP ARG ALA SEQRES 3 A 325 LEU GLY TYR ALA LYS ALA ILE ASN ALA LEU LYS SER PHE SEQRES 4 A 325 HIS LYS PRO VAL THR SER TYR GLN GLU ALA CYS SER ILE SEQRES 5 A 325 PRO GLY ILE GLY LYS ARG MET ALA GLU LYS ILE ILE GLU SEQRES 6 A 325 ILE LEU GLU SER GLY HIS LEU ARG LYS LEU ASP HIS ILE SEQRES 7 A 325 SER GLU SER VAL PRO VAL LEU GLU LEU PHE SER ASN ILE SEQRES 8 A 325 TRP GLY ALA GLY THR LYS THR ALA GLN MET TRP TYR GLN SEQRES 9 A 325 GLN GLY PHE ARG SER LEU GLU ASP ILE ARG SER GLN ALA SEQRES 10 A 325 SER LEU THR THR GLN GLN ALA ILE GLY LEU LYS HIS TYR SEQRES 11 A 325 SER ASP PHE LEU GLU ARG MET PRO ARG GLU GLU ALA THR SEQRES 12 A 325 GLU ILE GLU GLN THR VAL GLN LYS ALA ALA GLN ALA PHE SEQRES 13 A 325 ASN SER GLY LEU LEU CYS VAL ALA CYS GLY SER TYR ARG SEQRES 14 A 325 ARG GLY LYS ALA THR CYS GLY ASP VAL ASP VAL LEU ILE SEQRES 15 A 325 THR HIS PRO ASP GLY ARG SER HIS ARG GLY ILE PHE SER SEQRES 16 A 325 ARG LEU LEU ASP SER LEU ARG GLN GLU GLY PHE LEU THR SEQRES 17 A 325 ASP ASP LEU VAL SER GLN GLU GLU ASN GLY GLN GLN GLN SEQRES 18 A 325 LYS TYR LEU GLY VAL CYS ARG LEU PRO GLY PRO GLY ARG SEQRES 19 A 325 ARG HIS ARG ARG LEU ASP ILE ILE VAL VAL PRO TYR SER SEQRES 20 A 325 GLU PHE ALA CYS ALA LEU LEU TYR PHE THR GLY SER ALA SEQRES 21 A 325 HIS PHE ASN ARG SER MET ARG ALA LEU ALA LYS THR LYS SEQRES 22 A 325 GLY MET SER LEU SER GLU HIS ALA LEU SER THR ALA VAL SEQRES 23 A 325 VAL ARG ASN THR HIS GLY CYS LYS VAL GLY PRO GLY ARG SEQRES 24 A 325 VAL LEU PRO THR PRO THR GLU LYS ASP VAL PHE ARG LEU SEQRES 25 A 325 LEU GLY LEU PRO TYR ARG GLU PRO ALA GLU ARG ASP TRP SEQRES 1 T 11 DC DG DG DC DG DG DT DA DC DT DG SEQRES 1 P 7 DC DA DG DT DA DC CAR SEQRES 1 D 4 DG DC DC DG MODRES 3MDA CAR P 7 DC CYTOSINE ARABINOSE-5'-PHOSPHATE HET CAR P 7 20 HET PPV A 576 9 HET NA A 1 1 HET NA A 4 1 HET MG A 577 1 HETNAM CAR CYTOSINE ARABINOSE-5'-PHOSPHATE HETNAM PPV PYROPHOSPHATE HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION FORMUL 3 CAR C9 H14 N3 O8 P FORMUL 5 PPV H4 O7 P2 FORMUL 6 NA 2(NA 1+) FORMUL 8 MG MG 2+ FORMUL 9 HOH *290(H2 O) HELIX 1 1 ASN A 253 GLN A 270 1 18 HELIX 2 2 ASP A 272 PHE A 289 1 18 HELIX 3 3 SER A 295 ILE A 302 1 8 HELIX 4 4 GLY A 306 SER A 319 1 14 HELIX 5 5 LEU A 322 HIS A 327 5 6 HELIX 6 6 SER A 331 ASN A 340 1 10 HELIX 7 7 GLY A 345 GLN A 355 1 11 HELIX 8 8 SER A 359 ALA A 367 1 9 HELIX 9 9 THR A 370 HIS A 379 1 10 HELIX 10 10 SER A 381 GLU A 385 5 5 HELIX 11 11 ARG A 389 ALA A 405 1 17 HELIX 12 12 CYS A 415 ARG A 420 1 6 HELIX 13 13 ILE A 443 GLU A 454 1 12 HELIX 14 14 PRO A 495 SER A 497 5 3 HELIX 15 15 GLU A 498 GLY A 508 1 11 HELIX 16 16 SER A 509 LYS A 523 1 15 HELIX 17 17 THR A 555 LEU A 563 1 9 HELIX 18 18 GLU A 569 ARG A 573 5 5 SHEET 1 A 2 MET A 387 PRO A 388 0 SHEET 2 A 2 THR A 424 CYS A 425 -1 O CYS A 425 N MET A 387 SHEET 1 B 5 LEU A 411 ALA A 414 0 SHEET 2 B 5 VAL A 428 THR A 433 -1 O LEU A 431 N VAL A 413 SHEET 3 B 5 ARG A 487 VAL A 493 1 O ASP A 490 N VAL A 430 SHEET 4 B 5 LYS A 472 CYS A 477 -1 N CYS A 477 O ARG A 487 SHEET 5 B 5 LEU A 457 VAL A 462 -1 N THR A 458 O VAL A 476 SHEET 1 C 3 SER A 526 LEU A 527 0 SHEET 2 C 3 LEU A 532 THR A 534 -1 O SER A 533 N SER A 526 SHEET 3 C 3 ARG A 549 LEU A 551 -1 O LEU A 551 N LEU A 532 SHEET 1 D 2 VAL A 537 ARG A 538 0 SHEET 2 D 2 LYS A 544 GLY A 546 -1 O GLY A 546 N VAL A 537 LINK O3' DC P 6 P CAR P 7 1555 1555 1.62 LINK NA NA A 1 O SER A 339 1555 1555 2.56 LINK NA NA A 1 O ILE A 341 1555 1555 2.50 LINK NA NA A 1 O ALA A 344 1555 1555 2.45 LINK NA NA A 1 O HOH A 579 1555 1555 2.62 LINK NA NA A 1 OP1 DA P 5 1555 1555 2.45 LINK NA NA A 1 O HOH P 8 1555 1555 2.80 LINK NA NA A 4 O HOH A 66 1555 1555 2.82 LINK NA NA A 4 O SER A 463 1555 1555 2.62 LINK NA NA A 4 O HOH A 599 1555 1555 2.94 LINK NA NA A 4 O HOH T 76 1555 1555 2.91 LINK NA NA A 4 O HOH T 145 1555 1555 2.89 LINK OD1 ASP A 427 MG MG A 577 1555 1555 2.21 LINK OD2 ASP A 429 MG MG A 577 1555 1555 2.25 LINK O31 PPV A 576 MG MG A 577 1555 1555 2.26 LINK O22 PPV A 576 MG MG A 577 1555 1555 2.33 LINK MG MG A 577 O HOH A 585 1555 1555 2.38 LINK MG MG A 577 OP1 CAR P 7 1555 1555 2.89 CISPEP 1 GLY A 508 SER A 509 0 0.86 SITE 1 AC1 13 HOH A 77 HOH A 132 HOH A 210 ARG A 386 SITE 2 AC1 13 GLY A 416 SER A 417 ARG A 420 GLY A 426 SITE 3 AC1 13 ASP A 427 ASP A 429 MG A 577 HOH A 585 SITE 4 AC1 13 CAR P 7 SITE 1 AC2 6 SER A 339 ILE A 341 ALA A 344 HOH A 579 SITE 2 AC2 6 DA P 5 HOH P 8 SITE 1 AC3 5 HOH A 66 SER A 463 HOH A 599 HOH T 76 SITE 2 AC3 5 HOH T 145 SITE 1 AC4 5 ASP A 427 ASP A 429 PPV A 576 HOH A 585 SITE 2 AC4 5 CAR P 7 CRYST1 56.068 62.637 140.163 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017835 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015965 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007135 0.00000