data_3MJQ # _entry.id 3MJQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3MJQ pdb_00003mjq 10.2210/pdb3mjq/pdb RCSB RCSB058630 ? ? WWPDB D_1000058630 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id DhR85c _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3MJQ _pdbx_database_status.recvd_initial_deposition_date 2010-04-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vorobiev, S.' 1 'Neely, H.' 2 'Seetharaman, J.' 3 'Wang, D.' 4 'Ciccosanti, C.' 5 'Mao, L.' 6 'Xiao, R.' 7 'Acton, T.B.' 8 'Everett, J.K.' 9 'Montelione, G.T.' 10 'Tong, L.' 11 'Hunt, J.F.' 12 'Northeast Structural Genomics Consortium (NESG)' 13 # _citation.id primary _citation.title 'Crystal structure of the PAS domain of Q24QT8_DESHY protein from Desulfitobacterium hafniense.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vorobiev, S.' 1 ? primary 'Neely, H.' 2 ? primary 'Seetharaman, J.' 3 ? primary 'Wang, D.' 4 ? primary 'Ciccosanti, C.' 5 ? primary 'Mao, L.' 6 ? primary 'Xiao, R.' 7 ? primary 'Acton, T.B.' 8 ? primary 'Everett, J.K.' 9 ? primary 'Montelione, G.T.' 10 ? primary 'Tong, L.' 11 ? primary 'Hunt, J.F.' 12 ? # _cell.entry_id 3MJQ _cell.length_a 49.609 _cell.length_b 49.609 _cell.length_c 190.990 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3MJQ _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'uncharacterized protein' 14639.234 2 ? P35T 'PAS domain' ? 2 water nat water 18.015 18 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)KNFLETIED(MSE)ILIINREGRLLYANTAVPKKLGYTHEEL(MSE)S(MSE)HILTITSAGK(MSE)AEGEKIL AELFAGKKESLPLSLEKKEGTSIPAKARIWQGKWHNEPCLFAIIKDLSKEERASSPPFLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MKNFLETIEDMILIINREGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKESLPLSLEKKEG TSIPAKARIWQGKWHNEPCLFAIIKDLSKEERASSPPFLEHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier DhR85c # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 LYS n 1 3 ASN n 1 4 PHE n 1 5 LEU n 1 6 GLU n 1 7 THR n 1 8 ILE n 1 9 GLU n 1 10 ASP n 1 11 MSE n 1 12 ILE n 1 13 LEU n 1 14 ILE n 1 15 ILE n 1 16 ASN n 1 17 ARG n 1 18 GLU n 1 19 GLY n 1 20 ARG n 1 21 LEU n 1 22 LEU n 1 23 TYR n 1 24 ALA n 1 25 ASN n 1 26 THR n 1 27 ALA n 1 28 VAL n 1 29 PRO n 1 30 LYS n 1 31 LYS n 1 32 LEU n 1 33 GLY n 1 34 TYR n 1 35 THR n 1 36 HIS n 1 37 GLU n 1 38 GLU n 1 39 LEU n 1 40 MSE n 1 41 SER n 1 42 MSE n 1 43 HIS n 1 44 ILE n 1 45 LEU n 1 46 THR n 1 47 ILE n 1 48 THR n 1 49 SER n 1 50 ALA n 1 51 GLY n 1 52 LYS n 1 53 MSE n 1 54 ALA n 1 55 GLU n 1 56 GLY n 1 57 GLU n 1 58 LYS n 1 59 ILE n 1 60 LEU n 1 61 ALA n 1 62 GLU n 1 63 LEU n 1 64 PHE n 1 65 ALA n 1 66 GLY n 1 67 LYS n 1 68 LYS n 1 69 GLU n 1 70 SER n 1 71 LEU n 1 72 PRO n 1 73 LEU n 1 74 SER n 1 75 LEU n 1 76 GLU n 1 77 LYS n 1 78 LYS n 1 79 GLU n 1 80 GLY n 1 81 THR n 1 82 SER n 1 83 ILE n 1 84 PRO n 1 85 ALA n 1 86 LYS n 1 87 ALA n 1 88 ARG n 1 89 ILE n 1 90 TRP n 1 91 GLN n 1 92 GLY n 1 93 LYS n 1 94 TRP n 1 95 HIS n 1 96 ASN n 1 97 GLU n 1 98 PRO n 1 99 CYS n 1 100 LEU n 1 101 PHE n 1 102 ALA n 1 103 ILE n 1 104 ILE n 1 105 LYS n 1 106 ASP n 1 107 LEU n 1 108 SER n 1 109 LYS n 1 110 GLU n 1 111 GLU n 1 112 ARG n 1 113 ALA n 1 114 SER n 1 115 SER n 1 116 PRO n 1 117 PRO n 1 118 PHE n 1 119 LEU n 1 120 GLU n 1 121 HIS n 1 122 HIS n 1 123 HIS n 1 124 HIS n 1 125 HIS n 1 126 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene DSY3815 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Y51 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Desulfitobacterium hafniense' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 138119 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) +Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET 21-23C' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q24QT8_DESHY _struct_ref.pdbx_db_accession Q24QT8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKNFLETIEDMILIINREGRLLYANTAVPKKLGYPHEELMSMHILTITSAGKMAEGEKILAELFAGKKESLPLSLEKKEG TSIPAKARIWQGKWHNEPCLFAIIKDLSKEERASSPPFLE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3MJQ A 1 ? 120 ? Q24QT8 1 ? 120 ? 1 120 2 1 3MJQ B 1 ? 120 ? Q24QT8 1 ? 120 ? 1 120 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3MJQ THR A 35 ? UNP Q24QT8 PRO 35 'engineered mutation' 35 1 1 3MJQ HIS A 121 ? UNP Q24QT8 ? ? 'expression tag' 121 2 1 3MJQ HIS A 122 ? UNP Q24QT8 ? ? 'expression tag' 122 3 1 3MJQ HIS A 123 ? UNP Q24QT8 ? ? 'expression tag' 123 4 1 3MJQ HIS A 124 ? UNP Q24QT8 ? ? 'expression tag' 124 5 1 3MJQ HIS A 125 ? UNP Q24QT8 ? ? 'expression tag' 125 6 1 3MJQ HIS A 126 ? UNP Q24QT8 ? ? 'expression tag' 126 7 2 3MJQ THR B 35 ? UNP Q24QT8 PRO 35 'engineered mutation' 35 8 2 3MJQ HIS B 121 ? UNP Q24QT8 ? ? 'expression tag' 121 9 2 3MJQ HIS B 122 ? UNP Q24QT8 ? ? 'expression tag' 122 10 2 3MJQ HIS B 123 ? UNP Q24QT8 ? ? 'expression tag' 123 11 2 3MJQ HIS B 124 ? UNP Q24QT8 ? ? 'expression tag' 124 12 2 3MJQ HIS B 125 ? UNP Q24QT8 ? ? 'expression tag' 125 13 2 3MJQ HIS B 126 ? UNP Q24QT8 ? ? 'expression tag' 126 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3MJQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.01 _exptl_crystal.density_percent_sol 38.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'microbatch under paraffin oil' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '30% PEG 4000, 0.2M magnesium chloride, 0.1M Tris, pH 8.5, microbatch under paraffin oil, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.pdbx_collection_date 2010-04-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97900 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97900 # _reflns.entry_id 3MJQ _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.60 _reflns.number_obs 7832 _reflns.number_all ? _reflns.percent_possible_obs 98.2 _reflns.pdbx_Rmerge_I_obs 0.115 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.6 _reflns_shell.d_res_low 2.69 _reflns_shell.percent_possible_all 96.7 _reflns_shell.Rmerge_I_obs 0.676 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.98 _reflns_shell.pdbx_redundancy 5.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2774 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3MJQ _refine.ls_number_reflns_obs 7832 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.402 _refine.ls_d_res_high 2.601 _refine.ls_percent_reflns_obs 98.35 _refine.ls_R_factor_obs 0.2390 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2372 _refine.ls_R_factor_R_free 0.2783 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.60 _refine.ls_number_reflns_R_free 360 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.348 _refine.solvent_model_param_bsol 64.356 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.25 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1670 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 1688 _refine_hist.d_res_high 2.601 _refine_hist.d_res_low 34.402 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.009 ? ? 1702 'X-RAY DIFFRACTION' ? f_angle_d 1.566 ? ? 2290 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.613 ? ? 644 'X-RAY DIFFRACTION' ? f_chiral_restr 0.097 ? ? 263 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 283 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.6007 2.9768 2411 0.3491 99.00 0.4118 . . 108 . . . . 'X-RAY DIFFRACTION' . 2.9768 3.7498 2478 0.2328 99.00 0.2865 . . 117 . . . . 'X-RAY DIFFRACTION' . 3.7498 34.4048 2583 0.2129 97.00 0.2494 . . 135 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3MJQ _struct.title ;Crystal structure of the PAS domain of Q24QT8_DESHY protein from Desulfitobacterium hafniense. Northeast Structural Genomics Consortium Target DhR85c. ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MJQ _struct_keywords.pdbx_keywords 'structural genomics, unknown function' _struct_keywords.text 'NESG, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, unknown function' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details 'Dimer according to aggregation screening' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 4 ? ILE A 8 ? PHE A 4 ILE A 8 5 ? 5 HELX_P HELX_P2 2 THR A 26 ? GLY A 33 ? THR A 26 GLY A 33 1 ? 8 HELX_P HELX_P3 3 THR A 35 ? MSE A 42 ? THR A 35 MSE A 42 1 ? 8 HELX_P HELX_P4 4 HIS A 43 ? SER A 49 ? HIS A 43 SER A 49 1 ? 7 HELX_P HELX_P5 5 LYS A 52 ? GLY A 66 ? LYS A 52 GLY A 66 1 ? 15 HELX_P HELX_P6 6 PHE B 4 ? ILE B 8 ? PHE B 4 ILE B 8 5 ? 5 HELX_P HELX_P7 7 THR B 26 ? GLY B 33 ? THR B 26 GLY B 33 1 ? 8 HELX_P HELX_P8 8 THR B 35 ? MSE B 40 ? THR B 35 MSE B 40 1 ? 6 HELX_P HELX_P9 9 HIS B 43 ? SER B 49 ? HIS B 43 SER B 49 1 ? 7 HELX_P HELX_P10 10 LYS B 52 ? GLY B 66 ? LYS B 52 GLY B 66 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 10 C ? ? ? 1_555 A MSE 11 N ? ? A ASP 10 A MSE 11 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A MSE 11 C ? ? ? 1_555 A ILE 12 N ? ? A MSE 11 A ILE 12 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale3 covale both ? A LEU 39 C ? ? ? 1_555 A MSE 40 N ? ? A LEU 39 A MSE 40 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale4 covale both ? A MSE 40 C ? ? ? 1_555 A SER 41 N ? ? A MSE 40 A SER 41 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale5 covale both ? A SER 41 C ? ? ? 1_555 A MSE 42 N ? ? A SER 41 A MSE 42 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale6 covale both ? A MSE 42 C ? ? ? 1_555 A HIS 43 N ? ? A MSE 42 A HIS 43 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale7 covale both ? A LYS 52 C ? ? ? 1_555 A MSE 53 N ? ? A LYS 52 A MSE 53 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale8 covale both ? A MSE 53 C ? ? ? 1_555 A ALA 54 N ? ? A MSE 53 A ALA 54 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale9 covale both ? B ASP 10 C ? ? ? 1_555 B MSE 11 N ? ? B ASP 10 B MSE 11 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale10 covale both ? B MSE 11 C ? ? ? 1_555 B ILE 12 N ? ? B MSE 11 B ILE 12 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale11 covale both ? B LEU 39 C ? ? ? 1_555 B MSE 40 N ? ? B LEU 39 B MSE 40 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale12 covale both ? B MSE 40 C ? ? ? 1_555 B SER 41 N ? ? B MSE 40 B SER 41 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale13 covale both ? B SER 41 C ? ? ? 1_555 B MSE 42 N ? ? B SER 41 B MSE 42 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale14 covale both ? B MSE 42 C ? ? ? 1_555 B HIS 43 N ? ? B MSE 42 B HIS 43 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale15 covale both ? B LYS 52 C ? ? ? 1_555 B MSE 53 N ? ? B LYS 52 B MSE 53 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale16 covale both ? B MSE 53 C ? ? ? 1_555 B ALA 54 N ? ? B MSE 53 B ALA 54 1_555 ? ? ? ? ? ? ? 1.327 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 21 ? ALA A 24 ? LEU A 21 ALA A 24 A 2 MSE A 11 ? ASN A 16 ? MSE A 11 ASN A 16 A 3 PRO A 98 ? ASP A 106 ? PRO A 98 ASP A 106 A 4 SER A 82 ? LYS A 93 ? SER A 82 LYS A 93 A 5 SER A 70 ? GLU A 76 ? SER A 70 GLU A 76 B 1 LEU B 21 ? ALA B 24 ? LEU B 21 ALA B 24 B 2 MSE B 11 ? ASN B 16 ? MSE B 11 ASN B 16 B 3 GLU B 97 ? ASP B 106 ? GLU B 97 ASP B 106 B 4 SER B 82 ? TRP B 94 ? SER B 82 TRP B 94 B 5 SER B 70 ? GLU B 76 ? SER B 70 GLU B 76 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 23 ? O TYR A 23 N ILE A 14 ? N ILE A 14 A 2 3 N MSE A 11 ? N MSE A 11 O ILE A 104 ? O ILE A 104 A 3 4 O PHE A 101 ? O PHE A 101 N TRP A 90 ? N TRP A 90 A 4 5 O ALA A 85 ? O ALA A 85 N LEU A 73 ? N LEU A 73 B 1 2 O LEU B 22 ? O LEU B 22 N ILE B 14 ? N ILE B 14 B 2 3 N MSE B 11 ? N MSE B 11 O ILE B 104 ? O ILE B 104 B 3 4 O PHE B 101 ? O PHE B 101 N TRP B 90 ? N TRP B 90 B 4 5 O ALA B 87 ? O ALA B 87 N LEU B 71 ? N LEU B 71 # _database_PDB_matrix.entry_id 3MJQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3MJQ _atom_sites.fract_transf_matrix[1][1] 0.020158 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020158 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005236 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 LYS 2 2 2 LYS ALA A . n A 1 3 ASN 3 3 3 ASN ALA A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 MSE 11 11 11 MSE MSE A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 HIS 36 36 36 HIS HIS A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 MSE 40 40 40 MSE MSE A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 MSE 42 42 42 MSE MSE A . n A 1 43 HIS 43 43 43 HIS HIS A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 MSE 53 53 53 MSE MSE A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 TRP 90 90 90 TRP TRP A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 TRP 94 94 94 TRP TRP A . n A 1 95 HIS 95 95 95 HIS HIS A . n A 1 96 ASN 96 96 96 ASN ASN A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 CYS 99 99 99 CYS CYS A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 ILE 103 103 103 ILE ILE A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 LYS 109 109 ? ? ? A . n A 1 110 GLU 110 110 ? ? ? A . n A 1 111 GLU 111 111 ? ? ? A . n A 1 112 ARG 112 112 ? ? ? A . n A 1 113 ALA 113 113 ? ? ? A . n A 1 114 SER 114 114 ? ? ? A . n A 1 115 SER 115 115 ? ? ? A . n A 1 116 PRO 116 116 ? ? ? A . n A 1 117 PRO 117 117 ? ? ? A . n A 1 118 PHE 118 118 ? ? ? A . n A 1 119 LEU 119 119 ? ? ? A . n A 1 120 GLU 120 120 ? ? ? A . n A 1 121 HIS 121 121 ? ? ? A . n A 1 122 HIS 122 122 ? ? ? A . n A 1 123 HIS 123 123 ? ? ? A . n A 1 124 HIS 124 124 ? ? ? A . n A 1 125 HIS 125 125 ? ? ? A . n A 1 126 HIS 126 126 ? ? ? A . n B 1 1 MSE 1 1 ? ? ? B . n B 1 2 LYS 2 2 2 LYS ALA B . n B 1 3 ASN 3 3 3 ASN ALA B . n B 1 4 PHE 4 4 4 PHE PHE B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 GLU 6 6 6 GLU GLU B . n B 1 7 THR 7 7 7 THR THR B . n B 1 8 ILE 8 8 8 ILE ILE B . n B 1 9 GLU 9 9 9 GLU GLU B . n B 1 10 ASP 10 10 10 ASP ASP B . n B 1 11 MSE 11 11 11 MSE MSE B . n B 1 12 ILE 12 12 12 ILE ILE B . n B 1 13 LEU 13 13 13 LEU LEU B . n B 1 14 ILE 14 14 14 ILE ILE B . n B 1 15 ILE 15 15 15 ILE ILE B . n B 1 16 ASN 16 16 16 ASN ASN B . n B 1 17 ARG 17 17 17 ARG ARG B . n B 1 18 GLU 18 18 18 GLU GLU B . n B 1 19 GLY 19 19 19 GLY GLY B . n B 1 20 ARG 20 20 20 ARG ARG B . n B 1 21 LEU 21 21 21 LEU LEU B . n B 1 22 LEU 22 22 22 LEU LEU B . n B 1 23 TYR 23 23 23 TYR TYR B . n B 1 24 ALA 24 24 24 ALA ALA B . n B 1 25 ASN 25 25 25 ASN ASN B . n B 1 26 THR 26 26 26 THR THR B . n B 1 27 ALA 27 27 27 ALA ALA B . n B 1 28 VAL 28 28 28 VAL VAL B . n B 1 29 PRO 29 29 29 PRO PRO B . n B 1 30 LYS 30 30 30 LYS LYS B . n B 1 31 LYS 31 31 31 LYS LYS B . n B 1 32 LEU 32 32 32 LEU LEU B . n B 1 33 GLY 33 33 33 GLY GLY B . n B 1 34 TYR 34 34 34 TYR TYR B . n B 1 35 THR 35 35 35 THR THR B . n B 1 36 HIS 36 36 36 HIS HIS B . n B 1 37 GLU 37 37 37 GLU GLU B . n B 1 38 GLU 38 38 38 GLU GLU B . n B 1 39 LEU 39 39 39 LEU LEU B . n B 1 40 MSE 40 40 40 MSE MSE B . n B 1 41 SER 41 41 41 SER SER B . n B 1 42 MSE 42 42 42 MSE MSE B . n B 1 43 HIS 43 43 43 HIS HIS B . n B 1 44 ILE 44 44 44 ILE ILE B . n B 1 45 LEU 45 45 45 LEU LEU B . n B 1 46 THR 46 46 46 THR THR B . n B 1 47 ILE 47 47 47 ILE ILE B . n B 1 48 THR 48 48 48 THR THR B . n B 1 49 SER 49 49 49 SER SER B . n B 1 50 ALA 50 50 50 ALA ALA B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 LYS 52 52 52 LYS LYS B . n B 1 53 MSE 53 53 53 MSE MSE B . n B 1 54 ALA 54 54 54 ALA ALA B . n B 1 55 GLU 55 55 55 GLU GLU B . n B 1 56 GLY 56 56 56 GLY GLY B . n B 1 57 GLU 57 57 57 GLU GLU B . n B 1 58 LYS 58 58 58 LYS LYS B . n B 1 59 ILE 59 59 59 ILE ILE B . n B 1 60 LEU 60 60 60 LEU LEU B . n B 1 61 ALA 61 61 61 ALA ALA B . n B 1 62 GLU 62 62 62 GLU GLU B . n B 1 63 LEU 63 63 63 LEU LEU B . n B 1 64 PHE 64 64 64 PHE PHE B . n B 1 65 ALA 65 65 65 ALA ALA B . n B 1 66 GLY 66 66 66 GLY GLY B . n B 1 67 LYS 67 67 67 LYS LYS B . n B 1 68 LYS 68 68 68 LYS LYS B . n B 1 69 GLU 69 69 69 GLU GLU B . n B 1 70 SER 70 70 70 SER SER B . n B 1 71 LEU 71 71 71 LEU LEU B . n B 1 72 PRO 72 72 72 PRO PRO B . n B 1 73 LEU 73 73 73 LEU LEU B . n B 1 74 SER 74 74 74 SER SER B . n B 1 75 LEU 75 75 75 LEU LEU B . n B 1 76 GLU 76 76 76 GLU GLU B . n B 1 77 LYS 77 77 77 LYS LYS B . n B 1 78 LYS 78 78 78 LYS LYS B . n B 1 79 GLU 79 79 79 GLU GLU B . n B 1 80 GLY 80 80 80 GLY GLY B . n B 1 81 THR 81 81 81 THR THR B . n B 1 82 SER 82 82 82 SER SER B . n B 1 83 ILE 83 83 83 ILE ILE B . n B 1 84 PRO 84 84 84 PRO PRO B . n B 1 85 ALA 85 85 85 ALA ALA B . n B 1 86 LYS 86 86 86 LYS LYS B . n B 1 87 ALA 87 87 87 ALA ALA B . n B 1 88 ARG 88 88 88 ARG ARG B . n B 1 89 ILE 89 89 89 ILE ILE B . n B 1 90 TRP 90 90 90 TRP TRP B . n B 1 91 GLN 91 91 91 GLN GLN B . n B 1 92 GLY 92 92 92 GLY GLY B . n B 1 93 LYS 93 93 93 LYS LYS B . n B 1 94 TRP 94 94 94 TRP TRP B . n B 1 95 HIS 95 95 95 HIS HIS B . n B 1 96 ASN 96 96 96 ASN ASN B . n B 1 97 GLU 97 97 97 GLU GLU B . n B 1 98 PRO 98 98 98 PRO PRO B . n B 1 99 CYS 99 99 99 CYS CYS B . n B 1 100 LEU 100 100 100 LEU LEU B . n B 1 101 PHE 101 101 101 PHE PHE B . n B 1 102 ALA 102 102 102 ALA ALA B . n B 1 103 ILE 103 103 103 ILE ILE B . n B 1 104 ILE 104 104 104 ILE ILE B . n B 1 105 LYS 105 105 105 LYS LYS B . n B 1 106 ASP 106 106 106 ASP ASP B . n B 1 107 LEU 107 107 107 LEU LEU B . n B 1 108 SER 108 108 ? ? ? B . n B 1 109 LYS 109 109 ? ? ? B . n B 1 110 GLU 110 110 ? ? ? B . n B 1 111 GLU 111 111 ? ? ? B . n B 1 112 ARG 112 112 ? ? ? B . n B 1 113 ALA 113 113 ? ? ? B . n B 1 114 SER 114 114 ? ? ? B . n B 1 115 SER 115 115 ? ? ? B . n B 1 116 PRO 116 116 ? ? ? B . n B 1 117 PRO 117 117 ? ? ? B . n B 1 118 PHE 118 118 ? ? ? B . n B 1 119 LEU 119 119 ? ? ? B . n B 1 120 GLU 120 120 ? ? ? B . n B 1 121 HIS 121 121 ? ? ? B . n B 1 122 HIS 122 122 ? ? ? B . n B 1 123 HIS 123 123 ? ? ? B . n B 1 124 HIS 124 124 ? ? ? B . n B 1 125 HIS 125 125 ? ? ? B . n B 1 126 HIS 126 126 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 201 201 HOH WAT A . C 2 HOH 2 203 203 HOH WAT A . C 2 HOH 3 204 204 HOH WAT A . C 2 HOH 4 206 206 HOH WAT A . C 2 HOH 5 207 207 HOH WAT A . C 2 HOH 6 209 209 HOH WAT A . C 2 HOH 7 211 211 HOH WAT A . C 2 HOH 8 213 213 HOH WAT A . C 2 HOH 9 215 215 HOH WAT A . C 2 HOH 10 217 217 HOH WAT A . C 2 HOH 11 218 218 HOH WAT A . D 2 HOH 1 202 202 HOH WAT B . D 2 HOH 2 208 208 HOH WAT B . D 2 HOH 3 210 210 HOH WAT B . D 2 HOH 4 212 212 HOH WAT B . D 2 HOH 5 214 214 HOH WAT B . D 2 HOH 6 216 216 HOH WAT B . D 2 HOH 7 219 219 HOH WAT B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 11 A MSE 11 ? MET SELENOMETHIONINE 2 A MSE 40 A MSE 40 ? MET SELENOMETHIONINE 3 A MSE 42 A MSE 42 ? MET SELENOMETHIONINE 4 A MSE 53 A MSE 53 ? MET SELENOMETHIONINE 5 B MSE 11 B MSE 11 ? MET SELENOMETHIONINE 6 B MSE 40 B MSE 40 ? MET SELENOMETHIONINE 7 B MSE 42 B MSE 42 ? MET SELENOMETHIONINE 8 B MSE 53 B MSE 53 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1510 ? 1 MORE -13 ? 1 'SSA (A^2)' 11210 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-04-28 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2021-10-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 7.9845 20.9950 61.1311 0.4380 0.4507 0.4355 0.0326 -0.0535 -0.0397 2.2411 -0.3716 1.8668 1.6598 0.0948 1.1599 0.0055 0.1209 0.0451 0.0006 -0.2214 -0.0411 -0.2671 -0.2313 0.0000 'X-RAY DIFFRACTION' 2 ? ? ? ? ? 0.4845 0.5077 0.4072 -0.0678 -0.0625 0.0069 -0.0476 0.7424 1.6141 0.2818 -0.2595 0.8945 -0.1306 0.1772 -0.1806 -0.0169 0.1048 0.0690 -0.3791 0.1825 -0.0000 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details 'chain B' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SnB phasing . ? 2 PHENIX refinement '(phenix.refine: 1.6_289)' ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 4 ? ? -56.92 -70.25 2 1 LYS A 78 ? ? -39.85 -33.47 3 1 TRP A 94 ? ? -65.81 -80.14 4 1 HIS A 95 ? ? -106.94 -65.66 5 1 LEU A 107 ? ? -91.81 40.03 6 1 THR B 26 ? ? -34.64 -31.98 7 1 MSE B 40 ? ? -58.97 -2.33 8 1 LYS B 52 ? ? -116.38 70.95 9 1 LYS B 67 ? ? -35.08 -37.84 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 2 ? CG ? A LYS 2 CG 2 1 Y 1 A LYS 2 ? CD ? A LYS 2 CD 3 1 Y 1 A LYS 2 ? CE ? A LYS 2 CE 4 1 Y 1 A LYS 2 ? NZ ? A LYS 2 NZ 5 1 Y 1 A ASN 3 ? CG ? A ASN 3 CG 6 1 Y 1 A ASN 3 ? OD1 ? A ASN 3 OD1 7 1 Y 1 A ASN 3 ? ND2 ? A ASN 3 ND2 8 1 Y 1 B LYS 2 ? CG ? B LYS 2 CG 9 1 Y 1 B LYS 2 ? CD ? B LYS 2 CD 10 1 Y 1 B LYS 2 ? CE ? B LYS 2 CE 11 1 Y 1 B LYS 2 ? NZ ? B LYS 2 NZ 12 1 Y 1 B ASN 3 ? CG ? B ASN 3 CG 13 1 Y 1 B ASN 3 ? OD1 ? B ASN 3 OD1 14 1 Y 1 B ASN 3 ? ND2 ? B ASN 3 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A LYS 109 ? A LYS 109 3 1 Y 1 A GLU 110 ? A GLU 110 4 1 Y 1 A GLU 111 ? A GLU 111 5 1 Y 1 A ARG 112 ? A ARG 112 6 1 Y 1 A ALA 113 ? A ALA 113 7 1 Y 1 A SER 114 ? A SER 114 8 1 Y 1 A SER 115 ? A SER 115 9 1 Y 1 A PRO 116 ? A PRO 116 10 1 Y 1 A PRO 117 ? A PRO 117 11 1 Y 1 A PHE 118 ? A PHE 118 12 1 Y 1 A LEU 119 ? A LEU 119 13 1 Y 1 A GLU 120 ? A GLU 120 14 1 Y 1 A HIS 121 ? A HIS 121 15 1 Y 1 A HIS 122 ? A HIS 122 16 1 Y 1 A HIS 123 ? A HIS 123 17 1 Y 1 A HIS 124 ? A HIS 124 18 1 Y 1 A HIS 125 ? A HIS 125 19 1 Y 1 A HIS 126 ? A HIS 126 20 1 Y 1 B MSE 1 ? B MSE 1 21 1 Y 1 B SER 108 ? B SER 108 22 1 Y 1 B LYS 109 ? B LYS 109 23 1 Y 1 B GLU 110 ? B GLU 110 24 1 Y 1 B GLU 111 ? B GLU 111 25 1 Y 1 B ARG 112 ? B ARG 112 26 1 Y 1 B ALA 113 ? B ALA 113 27 1 Y 1 B SER 114 ? B SER 114 28 1 Y 1 B SER 115 ? B SER 115 29 1 Y 1 B PRO 116 ? B PRO 116 30 1 Y 1 B PRO 117 ? B PRO 117 31 1 Y 1 B PHE 118 ? B PHE 118 32 1 Y 1 B LEU 119 ? B LEU 119 33 1 Y 1 B GLU 120 ? B GLU 120 34 1 Y 1 B HIS 121 ? B HIS 121 35 1 Y 1 B HIS 122 ? B HIS 122 36 1 Y 1 B HIS 123 ? B HIS 123 37 1 Y 1 B HIS 124 ? B HIS 124 38 1 Y 1 B HIS 125 ? B HIS 125 39 1 Y 1 B HIS 126 ? B HIS 126 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'assay for oligomerization' _pdbx_struct_assembly_auth_evidence.details ? #