data_3MK8 # _entry.id 3MK8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3MK8 pdb_00003mk8 10.2210/pdb3mk8/pdb RCSB RCSB058648 ? ? WWPDB D_1000058648 ? ? # _pdbx_database_status.entry_id 3MK8 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-04-14 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stewart, M.' 1 'Fire, E.' 2 'Keating, A.E.' 3 'Walensky, L.D.' 4 # _citation.id primary _citation.title 'The MCL-1 BH3 helix is an exclusive MCL-1 inhibitor and apoptosis sensitizer.' _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_volume 6 _citation.page_first 595 _citation.page_last 601 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1552-4450 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20562877 _citation.pdbx_database_id_DOI 10.1038/nchembio.391 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stewart, M.L.' 1 ? primary 'Fire, E.' 2 ? primary 'Keating, A.E.' 3 ? primary 'Walensky, L.D.' 4 ? # _cell.length_a 44.505 _cell.length_b 56.866 _cell.length_c 63.984 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3MK8 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3MK8 _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Induced myeloid leukemia cell differentiation protein Mcl-1' 17937.359 1 ? ? 'MCL-1, residues 172-327' ? 2 polymer syn 'Induced myeloid leukemia cell differentiation protein Mcl-1' 2399.813 1 ? ? 'MCL-1, residues 208-228' ? 3 water nat water 18.015 70 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Bcl-2-related protein EAT/mcl1, mcl1/EAT, Bcl-2-like protein 3, Bcl2-L-3' 2 'Bcl-2-related protein EAT/mcl1, mcl1/EAT, Bcl-2-like protein 3, Bcl2-L-3' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSDELYRQSLEIISRYLREQATGAKDTKPMGRSGATSRKALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRV MIHVFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWLVKQRGWDGFVEFFHVEDLEGG ; ;GSDELYRQSLEIISRYLREQATGAKDTKPMGRSGATSRKALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRV MIHVFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWLVKQRGWDGFVEFFHVEDLEGG ; A ? 2 'polypeptide(L)' no yes 'KALETLRRVGDGV(MK8)RNH(MK8)TAF' KALETLRRVGDGVLRNHLTAF B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ASP n 1 4 GLU n 1 5 LEU n 1 6 TYR n 1 7 ARG n 1 8 GLN n 1 9 SER n 1 10 LEU n 1 11 GLU n 1 12 ILE n 1 13 ILE n 1 14 SER n 1 15 ARG n 1 16 TYR n 1 17 LEU n 1 18 ARG n 1 19 GLU n 1 20 GLN n 1 21 ALA n 1 22 THR n 1 23 GLY n 1 24 ALA n 1 25 LYS n 1 26 ASP n 1 27 THR n 1 28 LYS n 1 29 PRO n 1 30 MET n 1 31 GLY n 1 32 ARG n 1 33 SER n 1 34 GLY n 1 35 ALA n 1 36 THR n 1 37 SER n 1 38 ARG n 1 39 LYS n 1 40 ALA n 1 41 LEU n 1 42 GLU n 1 43 THR n 1 44 LEU n 1 45 ARG n 1 46 ARG n 1 47 VAL n 1 48 GLY n 1 49 ASP n 1 50 GLY n 1 51 VAL n 1 52 GLN n 1 53 ARG n 1 54 ASN n 1 55 HIS n 1 56 GLU n 1 57 THR n 1 58 ALA n 1 59 PHE n 1 60 GLN n 1 61 GLY n 1 62 MET n 1 63 LEU n 1 64 ARG n 1 65 LYS n 1 66 LEU n 1 67 ASP n 1 68 ILE n 1 69 LYS n 1 70 ASN n 1 71 GLU n 1 72 ASP n 1 73 ASP n 1 74 VAL n 1 75 LYS n 1 76 SER n 1 77 LEU n 1 78 SER n 1 79 ARG n 1 80 VAL n 1 81 MET n 1 82 ILE n 1 83 HIS n 1 84 VAL n 1 85 PHE n 1 86 SER n 1 87 ASP n 1 88 GLY n 1 89 VAL n 1 90 THR n 1 91 ASN n 1 92 TRP n 1 93 GLY n 1 94 ARG n 1 95 ILE n 1 96 VAL n 1 97 THR n 1 98 LEU n 1 99 ILE n 1 100 SER n 1 101 PHE n 1 102 GLY n 1 103 ALA n 1 104 PHE n 1 105 VAL n 1 106 ALA n 1 107 LYS n 1 108 HIS n 1 109 LEU n 1 110 LYS n 1 111 THR n 1 112 ILE n 1 113 ASN n 1 114 GLN n 1 115 GLU n 1 116 SER n 1 117 CYS n 1 118 ILE n 1 119 GLU n 1 120 PRO n 1 121 LEU n 1 122 ALA n 1 123 GLU n 1 124 SER n 1 125 ILE n 1 126 THR n 1 127 ASP n 1 128 VAL n 1 129 LEU n 1 130 VAL n 1 131 ARG n 1 132 THR n 1 133 LYS n 1 134 ARG n 1 135 ASP n 1 136 TRP n 1 137 LEU n 1 138 VAL n 1 139 LYS n 1 140 GLN n 1 141 ARG n 1 142 GLY n 1 143 TRP n 1 144 ASP n 1 145 GLY n 1 146 PHE n 1 147 VAL n 1 148 GLU n 1 149 PHE n 1 150 PHE n 1 151 HIS n 1 152 VAL n 1 153 GLU n 1 154 ASP n 1 155 LEU n 1 156 GLU n 1 157 GLY n 1 158 GLY n 2 1 LYS n 2 2 ALA n 2 3 LEU n 2 4 GLU n 2 5 THR n 2 6 LEU n 2 7 ARG n 2 8 ARG n 2 9 VAL n 2 10 GLY n 2 11 ASP n 2 12 GLY n 2 13 VAL n 2 14 MK8 n 2 15 ARG n 2 16 ASN n 2 17 HIS n 2 18 MK8 n 2 19 THR n 2 20 ALA n 2 21 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BCL2L3, MCL-1, MCL1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MCL1_HUMAN Q07820 1 ;DELYRQSLEIISRYLREQATGAKDTKPMGRSGATSRKALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMI HVFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWLVKQRGWDGFVEFFHVEDLEGG ; 172 ? 2 UNP MCL1_HUMAN Q07820 2 KALETLRRVGDGVQRNHETAF 208 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3MK8 A 3 ? 158 ? Q07820 172 ? 327 ? 172 327 2 2 3MK8 B 1 ? 21 ? Q07820 208 ? 228 ? 4 24 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3MK8 GLY A 1 ? UNP Q07820 ? ? 'expression tag' 170 1 1 3MK8 SER A 2 ? UNP Q07820 ? ? 'expression tag' 171 2 2 3MK8 MK8 B 14 ? UNP Q07820 GLN 221 'engineered mutation' 17 3 2 3MK8 MK8 B 18 ? UNP Q07820 GLU 225 'engineered mutation' 21 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MK8 'L-peptide linking' n 2-methyl-L-norleucine ? 'C7 H15 N O2' 145.199 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3MK8 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.99 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 38.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details 'PEG MME 2000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 200 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-06-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator Crystal _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.541800 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_wavelength_list 1.541800 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C # _reflns.entry_id 3MK8 _reflns.d_resolution_high 2.320 _reflns.d_resolution_low 50.000 _reflns.number_obs 7405 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI 13.600 _reflns.pdbx_chi_squared 1.344 _reflns.pdbx_redundancy 7.000 _reflns.percent_possible_obs 99.300 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all 7460 _reflns.pdbx_Rsym_value 0.048 _reflns.B_iso_Wilson_estimate 61.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.32 _reflns_shell.d_res_low 2.40 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs 4.8 _reflns_shell.pdbx_Rsym_value 0.384 _reflns_shell.pdbx_chi_squared 0.579 _reflns_shell.pdbx_redundancy 6.80 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 730 _reflns_shell.percent_possible_all 100.00 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3MK8 _refine.ls_d_res_high 2.321 _refine.ls_d_res_low 42.505 _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.110 _refine.ls_number_reflns_obs 7370 _refine.ls_number_reflns_all 7460 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details Random _refine.details 'Used TLS refinement.' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.233 _refine.ls_R_factor_R_work 0.231 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.275 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.590 _refine.ls_number_reflns_R_free 338 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 86.236 _refine.solvent_model_param_bsol 126.643 _refine.solvent_model_param_ksol 0.333 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.000 _refine.aniso_B[2][2] 0.000 _refine.aniso_B[3][3] 0.000 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.480 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.110 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.900 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'Chain A (MCL-1) of 3KJ0' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 222.53 _refine.B_iso_min 29.76 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1281 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 70 _refine_hist.number_atoms_total 1351 _refine_hist.d_res_high 2.321 _refine_hist.d_res_low 42.505 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 1300 0.002 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 1749 0.591 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 196 0.039 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 222 0.001 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 483 13.149 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.321 2.42 2 100.000 3463 . 0.273 0.342 . 173 . 3636 3463 . 'X-RAY DIFFRACTION' 2.924 42.512 2 99.000 3569 . 0.216 0.257 . 165 . 3734 3570 . 'X-RAY DIFFRACTION' # _struct.entry_id 3MK8 _struct.title 'The MCL-1 BH3 Helix is an Exclusive MCL-1 Inhibitor and Apoptosis Sensitizer' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MK8 _struct_keywords.text 'MCL-1, MCL-1 SAHB D, staple, SAHB, BCL-2 family, apoptosis, anti-apoptotic, APOPTOSIS-APOPTOSIS REGULATOR complex' _struct_keywords.pdbx_keywords 'APOPTOSIS/APOPTOSIS REGULATOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 3 ? GLN A 20 ? ASP A 172 GLN A 189 1 ? 18 HELX_P HELX_P2 2 ALA A 35 ? HIS A 55 ? ALA A 204 HIS A 224 1 ? 21 HELX_P HELX_P3 3 THR A 57 ? ASP A 67 ? THR A 226 ASP A 236 1 ? 11 HELX_P HELX_P4 4 ASN A 70 ? LYS A 75 ? ASN A 239 LYS A 244 1 ? 6 HELX_P HELX_P5 5 LYS A 75 ? PHE A 85 ? LYS A 244 PHE A 254 1 ? 11 HELX_P HELX_P6 6 SER A 86 ? GLY A 88 ? SER A 255 GLY A 257 5 ? 3 HELX_P HELX_P7 7 ASN A 91 ? THR A 111 ? ASN A 260 THR A 280 1 ? 21 HELX_P HELX_P8 8 GLN A 114 ? SER A 116 ? GLN A 283 SER A 285 5 ? 3 HELX_P HELX_P9 9 CYS A 117 ? THR A 132 ? CYS A 286 THR A 301 1 ? 16 HELX_P HELX_P10 10 LYS A 133 ? GLN A 140 ? LYS A 302 GLN A 309 1 ? 8 HELX_P HELX_P11 11 ARG A 141 ? PHE A 150 ? ARG A 310 PHE A 319 1 ? 10 HELX_P HELX_P12 12 GLU B 4 ? THR B 19 ? GLU B 7 THR B 22 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B VAL 13 C ? ? ? 1_555 B MK8 14 N ? ? B VAL 16 B MK8 17 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale both ? B MK8 14 C ? ? ? 1_555 B ARG 15 N ? ? B MK8 17 B ARG 18 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale none ? B MK8 14 CE ? ? ? 1_555 B MK8 18 CE ? ? B MK8 17 B MK8 21 1_555 ? ? ? ? ? ? ? 1.389 ? ? covale4 covale both ? B HIS 17 C ? ? ? 1_555 B MK8 18 N ? ? B HIS 20 B MK8 21 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale5 covale both ? B MK8 18 C ? ? ? 1_555 B THR 19 N ? ? B MK8 21 B THR 22 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 3MK8 _atom_sites.fract_transf_matrix[1][1] 0.022469 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017585 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015629 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 170 ? ? ? A . n A 1 2 SER 2 171 ? ? ? A . n A 1 3 ASP 3 172 172 ASP ASP A . n A 1 4 GLU 4 173 173 GLU GLU A . n A 1 5 LEU 5 174 174 LEU LEU A . n A 1 6 TYR 6 175 175 TYR TYR A . n A 1 7 ARG 7 176 176 ARG ARG A . n A 1 8 GLN 8 177 177 GLN GLN A . n A 1 9 SER 9 178 178 SER SER A . n A 1 10 LEU 10 179 179 LEU LEU A . n A 1 11 GLU 11 180 180 GLU GLU A . n A 1 12 ILE 12 181 181 ILE ILE A . n A 1 13 ILE 13 182 182 ILE ILE A . n A 1 14 SER 14 183 183 SER SER A . n A 1 15 ARG 15 184 184 ARG ARG A . n A 1 16 TYR 16 185 185 TYR TYR A . n A 1 17 LEU 17 186 186 LEU LEU A . n A 1 18 ARG 18 187 187 ARG ARG A . n A 1 19 GLU 19 188 188 GLU GLU A . n A 1 20 GLN 20 189 189 GLN GLN A . n A 1 21 ALA 21 190 190 ALA ALA A . n A 1 22 THR 22 191 191 THR THR A . n A 1 23 GLY 23 192 192 GLY GLY A . n A 1 24 ALA 24 193 193 ALA ALA A . n A 1 25 LYS 25 194 ? ? ? A . n A 1 26 ASP 26 195 ? ? ? A . n A 1 27 THR 27 196 ? ? ? A . n A 1 28 LYS 28 197 ? ? ? A . n A 1 29 PRO 29 198 ? ? ? A . n A 1 30 MET 30 199 ? ? ? A . n A 1 31 GLY 31 200 ? ? ? A . n A 1 32 ARG 32 201 ? ? ? A . n A 1 33 SER 33 202 202 SER SER A . n A 1 34 GLY 34 203 203 GLY GLY A . n A 1 35 ALA 35 204 204 ALA ALA A . n A 1 36 THR 36 205 205 THR THR A . n A 1 37 SER 37 206 206 SER SER A . n A 1 38 ARG 38 207 207 ARG ARG A . n A 1 39 LYS 39 208 208 LYS LYS A . n A 1 40 ALA 40 209 209 ALA ALA A . n A 1 41 LEU 41 210 210 LEU LEU A . n A 1 42 GLU 42 211 211 GLU GLU A . n A 1 43 THR 43 212 212 THR THR A . n A 1 44 LEU 44 213 213 LEU LEU A . n A 1 45 ARG 45 214 214 ARG ARG A . n A 1 46 ARG 46 215 215 ARG ARG A . n A 1 47 VAL 47 216 216 VAL VAL A . n A 1 48 GLY 48 217 217 GLY GLY A . n A 1 49 ASP 49 218 218 ASP ASP A . n A 1 50 GLY 50 219 219 GLY GLY A . n A 1 51 VAL 51 220 220 VAL VAL A . n A 1 52 GLN 52 221 221 GLN GLN A . n A 1 53 ARG 53 222 222 ARG ARG A . n A 1 54 ASN 54 223 223 ASN ASN A . n A 1 55 HIS 55 224 224 HIS HIS A . n A 1 56 GLU 56 225 225 GLU GLU A . n A 1 57 THR 57 226 226 THR THR A . n A 1 58 ALA 58 227 227 ALA ALA A . n A 1 59 PHE 59 228 228 PHE PHE A . n A 1 60 GLN 60 229 229 GLN GLN A . n A 1 61 GLY 61 230 230 GLY GLY A . n A 1 62 MET 62 231 231 MET MET A . n A 1 63 LEU 63 232 232 LEU LEU A . n A 1 64 ARG 64 233 233 ARG ARG A . n A 1 65 LYS 65 234 234 LYS LYS A . n A 1 66 LEU 66 235 235 LEU LEU A . n A 1 67 ASP 67 236 236 ASP ASP A . n A 1 68 ILE 68 237 237 ILE ILE A . n A 1 69 LYS 69 238 238 LYS LYS A . n A 1 70 ASN 70 239 239 ASN ASN A . n A 1 71 GLU 71 240 240 GLU GLU A . n A 1 72 ASP 72 241 241 ASP ASP A . n A 1 73 ASP 73 242 242 ASP ASP A . n A 1 74 VAL 74 243 243 VAL VAL A . n A 1 75 LYS 75 244 244 LYS LYS A . n A 1 76 SER 76 245 245 SER SER A . n A 1 77 LEU 77 246 246 LEU LEU A . n A 1 78 SER 78 247 247 SER SER A . n A 1 79 ARG 79 248 248 ARG ARG A . n A 1 80 VAL 80 249 249 VAL VAL A . n A 1 81 MET 81 250 250 MET MET A . n A 1 82 ILE 82 251 251 ILE ILE A . n A 1 83 HIS 83 252 252 HIS HIS A . n A 1 84 VAL 84 253 253 VAL VAL A . n A 1 85 PHE 85 254 254 PHE PHE A . n A 1 86 SER 86 255 255 SER SER A . n A 1 87 ASP 87 256 256 ASP ASP A . n A 1 88 GLY 88 257 257 GLY GLY A . n A 1 89 VAL 89 258 258 VAL VAL A . n A 1 90 THR 90 259 259 THR THR A . n A 1 91 ASN 91 260 260 ASN ASN A . n A 1 92 TRP 92 261 261 TRP TRP A . n A 1 93 GLY 93 262 262 GLY GLY A . n A 1 94 ARG 94 263 263 ARG ARG A . n A 1 95 ILE 95 264 264 ILE ILE A . n A 1 96 VAL 96 265 265 VAL VAL A . n A 1 97 THR 97 266 266 THR THR A . n A 1 98 LEU 98 267 267 LEU LEU A . n A 1 99 ILE 99 268 268 ILE ILE A . n A 1 100 SER 100 269 269 SER SER A . n A 1 101 PHE 101 270 270 PHE PHE A . n A 1 102 GLY 102 271 271 GLY GLY A . n A 1 103 ALA 103 272 272 ALA ALA A . n A 1 104 PHE 104 273 273 PHE PHE A . n A 1 105 VAL 105 274 274 VAL VAL A . n A 1 106 ALA 106 275 275 ALA ALA A . n A 1 107 LYS 107 276 276 LYS LYS A . n A 1 108 HIS 108 277 277 HIS HIS A . n A 1 109 LEU 109 278 278 LEU LEU A . n A 1 110 LYS 110 279 279 LYS LYS A . n A 1 111 THR 111 280 280 THR THR A . n A 1 112 ILE 112 281 281 ILE ILE A . n A 1 113 ASN 113 282 282 ASN ASN A . n A 1 114 GLN 114 283 283 GLN GLN A . n A 1 115 GLU 115 284 284 GLU GLU A . n A 1 116 SER 116 285 285 SER SER A . n A 1 117 CYS 117 286 286 CYS CYS A . n A 1 118 ILE 118 287 287 ILE ILE A . n A 1 119 GLU 119 288 288 GLU GLU A . n A 1 120 PRO 120 289 289 PRO PRO A . n A 1 121 LEU 121 290 290 LEU LEU A . n A 1 122 ALA 122 291 291 ALA ALA A . n A 1 123 GLU 123 292 292 GLU GLU A . n A 1 124 SER 124 293 293 SER SER A . n A 1 125 ILE 125 294 294 ILE ILE A . n A 1 126 THR 126 295 295 THR THR A . n A 1 127 ASP 127 296 296 ASP ASP A . n A 1 128 VAL 128 297 297 VAL VAL A . n A 1 129 LEU 129 298 298 LEU LEU A . n A 1 130 VAL 130 299 299 VAL VAL A . n A 1 131 ARG 131 300 300 ARG ARG A . n A 1 132 THR 132 301 301 THR THR A . n A 1 133 LYS 133 302 302 LYS LYS A . n A 1 134 ARG 134 303 303 ARG ARG A . n A 1 135 ASP 135 304 304 ASP ASP A . n A 1 136 TRP 136 305 305 TRP TRP A . n A 1 137 LEU 137 306 306 LEU LEU A . n A 1 138 VAL 138 307 307 VAL VAL A . n A 1 139 LYS 139 308 308 LYS LYS A . n A 1 140 GLN 140 309 309 GLN GLN A . n A 1 141 ARG 141 310 310 ARG ARG A . n A 1 142 GLY 142 311 311 GLY GLY A . n A 1 143 TRP 143 312 312 TRP TRP A . n A 1 144 ASP 144 313 313 ASP ASP A . n A 1 145 GLY 145 314 314 GLY GLY A . n A 1 146 PHE 146 315 315 PHE PHE A . n A 1 147 VAL 147 316 316 VAL VAL A . n A 1 148 GLU 148 317 317 GLU GLU A . n A 1 149 PHE 149 318 318 PHE PHE A . n A 1 150 PHE 150 319 319 PHE PHE A . n A 1 151 HIS 151 320 320 HIS HIS A . n A 1 152 VAL 152 321 ? ? ? A . n A 1 153 GLU 153 322 ? ? ? A . n A 1 154 ASP 154 323 ? ? ? A . n A 1 155 LEU 155 324 ? ? ? A . n A 1 156 GLU 156 325 ? ? ? A . n A 1 157 GLY 157 326 ? ? ? A . n A 1 158 GLY 158 327 ? ? ? A . n B 2 1 LYS 1 4 ? ? ? B . n B 2 2 ALA 2 5 5 ALA ALA B . n B 2 3 LEU 3 6 6 LEU LEU B . n B 2 4 GLU 4 7 7 GLU GLU B . n B 2 5 THR 5 8 8 THR THR B . n B 2 6 LEU 6 9 9 LEU LEU B . n B 2 7 ARG 7 10 10 ARG ARG B . n B 2 8 ARG 8 11 11 ARG ARG B . n B 2 9 VAL 9 12 12 VAL VAL B . n B 2 10 GLY 10 13 13 GLY GLY B . n B 2 11 ASP 11 14 14 ASP ASP B . n B 2 12 GLY 12 15 15 GLY GLY B . n B 2 13 VAL 13 16 16 VAL VAL B . n B 2 14 MK8 14 17 17 MK8 MK8 B . n B 2 15 ARG 15 18 18 ARG ARG B . n B 2 16 ASN 16 19 19 ASN ASN B . n B 2 17 HIS 17 20 20 HIS HIS B . n B 2 18 MK8 18 21 21 MK8 MK8 B . n B 2 19 THR 19 22 22 THR THR B . n B 2 20 ALA 20 23 23 ALA ALA B . n B 2 21 PHE 21 24 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 2 2 HOH HOH A . C 3 HOH 2 3 3 HOH HOH A . C 3 HOH 3 5 5 HOH HOH A . C 3 HOH 4 6 6 HOH HOH A . C 3 HOH 5 8 8 HOH HOH A . C 3 HOH 6 11 11 HOH HOH A . C 3 HOH 7 15 15 HOH HOH A . C 3 HOH 8 17 17 HOH HOH A . C 3 HOH 9 18 18 HOH HOH A . C 3 HOH 10 19 19 HOH HOH A . C 3 HOH 11 21 21 HOH HOH A . C 3 HOH 12 22 22 HOH HOH A . C 3 HOH 13 23 23 HOH HOH A . C 3 HOH 14 24 24 HOH HOH A . C 3 HOH 15 25 25 HOH HOH A . C 3 HOH 16 26 26 HOH HOH A . C 3 HOH 17 27 27 HOH HOH A . C 3 HOH 18 28 28 HOH HOH A . C 3 HOH 19 29 29 HOH HOH A . C 3 HOH 20 31 31 HOH HOH A . C 3 HOH 21 34 34 HOH HOH A . C 3 HOH 22 35 35 HOH HOH A . C 3 HOH 23 36 36 HOH HOH A . C 3 HOH 24 37 37 HOH HOH A . C 3 HOH 25 38 38 HOH HOH A . C 3 HOH 26 39 39 HOH HOH A . C 3 HOH 27 40 40 HOH HOH A . C 3 HOH 28 43 43 HOH HOH A . C 3 HOH 29 44 44 HOH HOH A . C 3 HOH 30 45 45 HOH HOH A . C 3 HOH 31 46 46 HOH HOH A . C 3 HOH 32 47 47 HOH HOH A . C 3 HOH 33 48 48 HOH HOH A . C 3 HOH 34 49 49 HOH HOH A . C 3 HOH 35 50 50 HOH HOH A . C 3 HOH 36 51 51 HOH HOH A . C 3 HOH 37 52 52 HOH HOH A . C 3 HOH 38 54 54 HOH HOH A . C 3 HOH 39 58 58 HOH HOH A . C 3 HOH 40 59 59 HOH HOH A . C 3 HOH 41 60 60 HOH HOH A . C 3 HOH 42 61 61 HOH HOH A . C 3 HOH 43 65 65 HOH HOH A . C 3 HOH 44 66 66 HOH HOH A . C 3 HOH 45 67 67 HOH HOH A . C 3 HOH 46 68 68 HOH HOH A . C 3 HOH 47 69 69 HOH HOH A . C 3 HOH 48 70 70 HOH HOH A . C 3 HOH 49 73 73 HOH HOH A . C 3 HOH 50 74 74 HOH HOH A . C 3 HOH 51 75 75 HOH HOH A . C 3 HOH 52 76 76 HOH HOH A . C 3 HOH 53 86 86 HOH HOH A . C 3 HOH 54 87 87 HOH HOH A . C 3 HOH 55 88 88 HOH HOH A . D 3 HOH 1 25 13 HOH HOH B . D 3 HOH 2 33 33 HOH HOH B . D 3 HOH 3 41 41 HOH HOH B . D 3 HOH 4 42 42 HOH HOH B . D 3 HOH 5 55 55 HOH HOH B . D 3 HOH 6 56 56 HOH HOH B . D 3 HOH 7 57 57 HOH HOH B . D 3 HOH 8 62 62 HOH HOH B . D 3 HOH 9 64 64 HOH HOH B . D 3 HOH 10 71 71 HOH HOH B . D 3 HOH 11 77 77 HOH HOH B . D 3 HOH 12 78 78 HOH HOH B . D 3 HOH 13 79 79 HOH HOH B . D 3 HOH 14 80 80 HOH HOH B . D 3 HOH 15 85 85 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B MK8 14 B MK8 17 ? LEU 2-METHYL-L-NORLEUCINE 2 B MK8 18 B MK8 21 ? LEU 2-METHYL-L-NORLEUCINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1530 ? 1 MORE -13 ? 1 'SSA (A^2)' 8400 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2021-10-06 5 'Structure model' 1 4 2023-09-06 6 'Structure model' 1 5 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Refinement description' 7 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' pdbx_initial_refinement_model 8 6 'Structure model' chem_comp_atom 9 6 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_dist_value' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 15 4 'Structure model' '_struct_ref_seq_dif.details' 16 6 'Structure model' '_chem_comp_atom.atom_id' 17 6 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -0.9009 -0.5265 5.5716 0.2466 0.2364 0.2119 0.0198 0.0008 0.0289 8.2003 5.0525 10.8354 -1.5783 -2.8662 1.0037 -0.5054 0.2712 0.2410 0.1458 0.0711 0.3251 0.4273 0.3285 0.2651 'X-RAY DIFFRACTION' 2 ? refined 11.2759 -0.9951 -2.6372 0.3078 1.3822 0.4909 0.1393 -0.0119 -0.0340 1.8939 1.8089 4.4399 0.8098 -0.9019 -1.2720 -0.1867 -0.5233 0.7419 -1.2008 -0.0908 -0.6704 0.0400 0.5683 1.1881 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 172 A 320 'Chain A' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 5 B 23 'Chain B' ? ? ? ? ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 PHENIX . ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.100 'Jan. 22, 2010' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # _pdbx_entry_details.entry_id 3MK8 _pdbx_entry_details.nonpolymer_details 'AUTHOR STATES THAT THE BRIDGE OF TWO MK8 IS FORMED BY A DOUBLE BOND' _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 236 ? ? 57.43 132.16 2 1 PHE A 254 ? ? -94.36 33.60 3 1 ASP A 256 ? ? -69.08 12.60 4 1 ASN A 282 ? ? 69.74 -7.14 5 1 GLN A 283 ? ? -84.88 43.30 6 1 PHE A 319 ? ? -80.37 49.68 7 1 MK8 B 21 ? ? -58.48 -9.13 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A THR 191 ? OG1 ? A THR 22 OG1 2 1 Y 1 A THR 191 ? CG2 ? A THR 22 CG2 3 1 Y 1 A ASP 236 ? CG ? A ASP 67 CG 4 1 Y 1 A ASP 236 ? OD1 ? A ASP 67 OD1 5 1 Y 1 A ASP 236 ? OD2 ? A ASP 67 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 170 ? A GLY 1 2 1 Y 1 A SER 171 ? A SER 2 3 1 Y 1 A LYS 194 ? A LYS 25 4 1 Y 1 A ASP 195 ? A ASP 26 5 1 Y 1 A THR 196 ? A THR 27 6 1 Y 1 A LYS 197 ? A LYS 28 7 1 Y 1 A PRO 198 ? A PRO 29 8 1 Y 1 A MET 199 ? A MET 30 9 1 Y 1 A GLY 200 ? A GLY 31 10 1 Y 1 A ARG 201 ? A ARG 32 11 1 Y 1 A VAL 321 ? A VAL 152 12 1 Y 1 A GLU 322 ? A GLU 153 13 1 Y 1 A ASP 323 ? A ASP 154 14 1 Y 1 A LEU 324 ? A LEU 155 15 1 Y 1 A GLU 325 ? A GLU 156 16 1 Y 1 A GLY 326 ? A GLY 157 17 1 Y 1 A GLY 327 ? A GLY 158 18 1 Y 1 B LYS 4 ? B LYS 1 19 1 Y 1 B PHE 24 ? B PHE 21 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MK8 C C N N 250 MK8 N N N N 251 MK8 O O N N 252 MK8 CA C N S 253 MK8 CB C N N 254 MK8 CD C N N 255 MK8 CE C N N 256 MK8 CG C N N 257 MK8 CB1 C N N 258 MK8 OXT O N N 259 MK8 H H N N 260 MK8 H2 H N N 261 MK8 HB H N N 262 MK8 HBA H N N 263 MK8 HD H N N 264 MK8 HDA H N N 265 MK8 HE H N N 266 MK8 HEA H N N 267 MK8 HEB H N N 268 MK8 HG H N N 269 MK8 HGA H N N 270 MK8 HB1 H N N 271 MK8 HB1A H N N 272 MK8 HB1B H N N 273 MK8 HXT H N N 274 PHE N N N N 275 PHE CA C N S 276 PHE C C N N 277 PHE O O N N 278 PHE CB C N N 279 PHE CG C Y N 280 PHE CD1 C Y N 281 PHE CD2 C Y N 282 PHE CE1 C Y N 283 PHE CE2 C Y N 284 PHE CZ C Y N 285 PHE OXT O N N 286 PHE H H N N 287 PHE H2 H N N 288 PHE HA H N N 289 PHE HB2 H N N 290 PHE HB3 H N N 291 PHE HD1 H N N 292 PHE HD2 H N N 293 PHE HE1 H N N 294 PHE HE2 H N N 295 PHE HZ H N N 296 PHE HXT H N N 297 PRO N N N N 298 PRO CA C N S 299 PRO C C N N 300 PRO O O N N 301 PRO CB C N N 302 PRO CG C N N 303 PRO CD C N N 304 PRO OXT O N N 305 PRO H H N N 306 PRO HA H N N 307 PRO HB2 H N N 308 PRO HB3 H N N 309 PRO HG2 H N N 310 PRO HG3 H N N 311 PRO HD2 H N N 312 PRO HD3 H N N 313 PRO HXT H N N 314 SER N N N N 315 SER CA C N S 316 SER C C N N 317 SER O O N N 318 SER CB C N N 319 SER OG O N N 320 SER OXT O N N 321 SER H H N N 322 SER H2 H N N 323 SER HA H N N 324 SER HB2 H N N 325 SER HB3 H N N 326 SER HG H N N 327 SER HXT H N N 328 THR N N N N 329 THR CA C N S 330 THR C C N N 331 THR O O N N 332 THR CB C N R 333 THR OG1 O N N 334 THR CG2 C N N 335 THR OXT O N N 336 THR H H N N 337 THR H2 H N N 338 THR HA H N N 339 THR HB H N N 340 THR HG1 H N N 341 THR HG21 H N N 342 THR HG22 H N N 343 THR HG23 H N N 344 THR HXT H N N 345 TRP N N N N 346 TRP CA C N S 347 TRP C C N N 348 TRP O O N N 349 TRP CB C N N 350 TRP CG C Y N 351 TRP CD1 C Y N 352 TRP CD2 C Y N 353 TRP NE1 N Y N 354 TRP CE2 C Y N 355 TRP CE3 C Y N 356 TRP CZ2 C Y N 357 TRP CZ3 C Y N 358 TRP CH2 C Y N 359 TRP OXT O N N 360 TRP H H N N 361 TRP H2 H N N 362 TRP HA H N N 363 TRP HB2 H N N 364 TRP HB3 H N N 365 TRP HD1 H N N 366 TRP HE1 H N N 367 TRP HE3 H N N 368 TRP HZ2 H N N 369 TRP HZ3 H N N 370 TRP HH2 H N N 371 TRP HXT H N N 372 TYR N N N N 373 TYR CA C N S 374 TYR C C N N 375 TYR O O N N 376 TYR CB C N N 377 TYR CG C Y N 378 TYR CD1 C Y N 379 TYR CD2 C Y N 380 TYR CE1 C Y N 381 TYR CE2 C Y N 382 TYR CZ C Y N 383 TYR OH O N N 384 TYR OXT O N N 385 TYR H H N N 386 TYR H2 H N N 387 TYR HA H N N 388 TYR HB2 H N N 389 TYR HB3 H N N 390 TYR HD1 H N N 391 TYR HD2 H N N 392 TYR HE1 H N N 393 TYR HE2 H N N 394 TYR HH H N N 395 TYR HXT H N N 396 VAL N N N N 397 VAL CA C N S 398 VAL C C N N 399 VAL O O N N 400 VAL CB C N N 401 VAL CG1 C N N 402 VAL CG2 C N N 403 VAL OXT O N N 404 VAL H H N N 405 VAL H2 H N N 406 VAL HA H N N 407 VAL HB H N N 408 VAL HG11 H N N 409 VAL HG12 H N N 410 VAL HG13 H N N 411 VAL HG21 H N N 412 VAL HG22 H N N 413 VAL HG23 H N N 414 VAL HXT H N N 415 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 MK8 C CA sing N N 237 MK8 C OXT sing N N 238 MK8 N H sing N N 239 MK8 N H2 sing N N 240 MK8 O C doub N N 241 MK8 CA N sing N N 242 MK8 CA CB sing N N 243 MK8 CB HB sing N N 244 MK8 CB HBA sing N N 245 MK8 CD CG sing N N 246 MK8 CD HD sing N N 247 MK8 CD HDA sing N N 248 MK8 CE CD sing N N 249 MK8 CE HE sing N N 250 MK8 CE HEA sing N N 251 MK8 CE HEB sing N N 252 MK8 CG CB sing N N 253 MK8 CG HG sing N N 254 MK8 CG HGA sing N N 255 MK8 CB1 CA sing N N 256 MK8 CB1 HB1 sing N N 257 MK8 CB1 HB1A sing N N 258 MK8 CB1 HB1B sing N N 259 MK8 OXT HXT sing N N 260 PHE N CA sing N N 261 PHE N H sing N N 262 PHE N H2 sing N N 263 PHE CA C sing N N 264 PHE CA CB sing N N 265 PHE CA HA sing N N 266 PHE C O doub N N 267 PHE C OXT sing N N 268 PHE CB CG sing N N 269 PHE CB HB2 sing N N 270 PHE CB HB3 sing N N 271 PHE CG CD1 doub Y N 272 PHE CG CD2 sing Y N 273 PHE CD1 CE1 sing Y N 274 PHE CD1 HD1 sing N N 275 PHE CD2 CE2 doub Y N 276 PHE CD2 HD2 sing N N 277 PHE CE1 CZ doub Y N 278 PHE CE1 HE1 sing N N 279 PHE CE2 CZ sing Y N 280 PHE CE2 HE2 sing N N 281 PHE CZ HZ sing N N 282 PHE OXT HXT sing N N 283 PRO N CA sing N N 284 PRO N CD sing N N 285 PRO N H sing N N 286 PRO CA C sing N N 287 PRO CA CB sing N N 288 PRO CA HA sing N N 289 PRO C O doub N N 290 PRO C OXT sing N N 291 PRO CB CG sing N N 292 PRO CB HB2 sing N N 293 PRO CB HB3 sing N N 294 PRO CG CD sing N N 295 PRO CG HG2 sing N N 296 PRO CG HG3 sing N N 297 PRO CD HD2 sing N N 298 PRO CD HD3 sing N N 299 PRO OXT HXT sing N N 300 SER N CA sing N N 301 SER N H sing N N 302 SER N H2 sing N N 303 SER CA C sing N N 304 SER CA CB sing N N 305 SER CA HA sing N N 306 SER C O doub N N 307 SER C OXT sing N N 308 SER CB OG sing N N 309 SER CB HB2 sing N N 310 SER CB HB3 sing N N 311 SER OG HG sing N N 312 SER OXT HXT sing N N 313 THR N CA sing N N 314 THR N H sing N N 315 THR N H2 sing N N 316 THR CA C sing N N 317 THR CA CB sing N N 318 THR CA HA sing N N 319 THR C O doub N N 320 THR C OXT sing N N 321 THR CB OG1 sing N N 322 THR CB CG2 sing N N 323 THR CB HB sing N N 324 THR OG1 HG1 sing N N 325 THR CG2 HG21 sing N N 326 THR CG2 HG22 sing N N 327 THR CG2 HG23 sing N N 328 THR OXT HXT sing N N 329 TRP N CA sing N N 330 TRP N H sing N N 331 TRP N H2 sing N N 332 TRP CA C sing N N 333 TRP CA CB sing N N 334 TRP CA HA sing N N 335 TRP C O doub N N 336 TRP C OXT sing N N 337 TRP CB CG sing N N 338 TRP CB HB2 sing N N 339 TRP CB HB3 sing N N 340 TRP CG CD1 doub Y N 341 TRP CG CD2 sing Y N 342 TRP CD1 NE1 sing Y N 343 TRP CD1 HD1 sing N N 344 TRP CD2 CE2 doub Y N 345 TRP CD2 CE3 sing Y N 346 TRP NE1 CE2 sing Y N 347 TRP NE1 HE1 sing N N 348 TRP CE2 CZ2 sing Y N 349 TRP CE3 CZ3 doub Y N 350 TRP CE3 HE3 sing N N 351 TRP CZ2 CH2 doub Y N 352 TRP CZ2 HZ2 sing N N 353 TRP CZ3 CH2 sing Y N 354 TRP CZ3 HZ3 sing N N 355 TRP CH2 HH2 sing N N 356 TRP OXT HXT sing N N 357 TYR N CA sing N N 358 TYR N H sing N N 359 TYR N H2 sing N N 360 TYR CA C sing N N 361 TYR CA CB sing N N 362 TYR CA HA sing N N 363 TYR C O doub N N 364 TYR C OXT sing N N 365 TYR CB CG sing N N 366 TYR CB HB2 sing N N 367 TYR CB HB3 sing N N 368 TYR CG CD1 doub Y N 369 TYR CG CD2 sing Y N 370 TYR CD1 CE1 sing Y N 371 TYR CD1 HD1 sing N N 372 TYR CD2 CE2 doub Y N 373 TYR CD2 HD2 sing N N 374 TYR CE1 CZ doub Y N 375 TYR CE1 HE1 sing N N 376 TYR CE2 CZ sing Y N 377 TYR CE2 HE2 sing N N 378 TYR CZ OH sing N N 379 TYR OH HH sing N N 380 TYR OXT HXT sing N N 381 VAL N CA sing N N 382 VAL N H sing N N 383 VAL N H2 sing N N 384 VAL CA C sing N N 385 VAL CA CB sing N N 386 VAL CA HA sing N N 387 VAL C O doub N N 388 VAL C OXT sing N N 389 VAL CB CG1 sing N N 390 VAL CB CG2 sing N N 391 VAL CB HB sing N N 392 VAL CG1 HG11 sing N N 393 VAL CG1 HG12 sing N N 394 VAL CG1 HG13 sing N N 395 VAL CG2 HG21 sing N N 396 VAL CG2 HG22 sing N N 397 VAL CG2 HG23 sing N N 398 VAL OXT HXT sing N N 399 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3KJ0 _pdbx_initial_refinement_model.details 'Chain A (MCL-1) of 3KJ0' #