data_3MKW # _entry.id 3MKW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3MKW pdb_00003mkw 10.2210/pdb3mkw/pdb NDB NA0507 ? ? RCSB RCSB058672 ? ? WWPDB D_1000058672 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-05-05 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 4 'Structure model' 1 3 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3MKW _pdbx_database_status.recvd_initial_deposition_date 2010-04-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3MKY 'SopB(155-323)-18mer, I23 crystal form' unspecified PDB 3MKZ 'SopB(155-272)-18mer complex, P21 form' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schumacher, M.A.' 1 'Piro, K.' 2 'Xu, W.' 3 # _citation.id primary _citation.title 'Insight into F plasmid DNA segregation revealed by structures of SopB and SopB-DNA complexes.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 38 _citation.page_first 4514 _citation.page_last 4526 _citation.year 2010 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20236989 _citation.pdbx_database_id_DOI 10.1093/nar/gkq161 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schumacher, M.A.' 1 ? primary 'Piro, K.M.' 2 ? primary 'Xu, W.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3') ; 5517.566 2 ? ? '18 mer sopC repeat' '18-mer sopC repeat' 2 polymer man 'Protein sopB' 15157.027 2 ? ? 'SopB(UNP residues 155-272)' ? 3 non-polymer syn 'SULFATE ION' 96.063 9 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'Plasmid partition protein B' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DT)(DG)(DG)(DG)(DA)(DC)(DC)(DA)(DT)(DG)(DG)(DT)(DC)(DC)(DC)(DA)(DG)' CTGGGACCATGGTCCCAG U,T ? 2 'polypeptide(L)' no no ;MGSSHHHHHHSSGLVPRGSHYRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHPG ELSARSGDALQKAFTDKEELLKQQASNLHEQKKAGVIFEADEVITLLTSVLKTSSASR ; ;MGSSHHHHHHSSGLVPRGSHYRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHPG ELSARSGDALQKAFTDKEELLKQQASNLHEQKKAGVIFEADEVITLLTSVLKTSSASR ; B,P ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'SULFATE ION' _pdbx_entity_nonpoly.comp_id SO4 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DA n 1 7 DC n 1 8 DC n 1 9 DA n 1 10 DT n 1 11 DG n 1 12 DG n 1 13 DT n 1 14 DC n 1 15 DC n 1 16 DC n 1 17 DA n 1 18 DG n 2 1 MET n 2 2 GLY n 2 3 SER n 2 4 SER n 2 5 HIS n 2 6 HIS n 2 7 HIS n 2 8 HIS n 2 9 HIS n 2 10 HIS n 2 11 SER n 2 12 SER n 2 13 GLY n 2 14 LEU n 2 15 VAL n 2 16 PRO n 2 17 ARG n 2 18 GLY n 2 19 SER n 2 20 HIS n 2 21 TYR n 2 22 ARG n 2 23 PRO n 2 24 THR n 2 25 SER n 2 26 ALA n 2 27 TYR n 2 28 GLU n 2 29 ARG n 2 30 GLY n 2 31 GLN n 2 32 ARG n 2 33 TYR n 2 34 ALA n 2 35 SER n 2 36 ARG n 2 37 LEU n 2 38 GLN n 2 39 ASN n 2 40 GLU n 2 41 PHE n 2 42 ALA n 2 43 GLY n 2 44 ASN n 2 45 ILE n 2 46 SER n 2 47 ALA n 2 48 LEU n 2 49 ALA n 2 50 ASP n 2 51 ALA n 2 52 GLU n 2 53 ASN n 2 54 ILE n 2 55 SER n 2 56 ARG n 2 57 LYS n 2 58 ILE n 2 59 ILE n 2 60 THR n 2 61 ARG n 2 62 CYS n 2 63 ILE n 2 64 ASN n 2 65 THR n 2 66 ALA n 2 67 LYS n 2 68 LEU n 2 69 PRO n 2 70 LYS n 2 71 SER n 2 72 VAL n 2 73 VAL n 2 74 ALA n 2 75 LEU n 2 76 PHE n 2 77 SER n 2 78 HIS n 2 79 PRO n 2 80 GLY n 2 81 GLU n 2 82 LEU n 2 83 SER n 2 84 ALA n 2 85 ARG n 2 86 SER n 2 87 GLY n 2 88 ASP n 2 89 ALA n 2 90 LEU n 2 91 GLN n 2 92 LYS n 2 93 ALA n 2 94 PHE n 2 95 THR n 2 96 ASP n 2 97 LYS n 2 98 GLU n 2 99 GLU n 2 100 LEU n 2 101 LEU n 2 102 LYS n 2 103 GLN n 2 104 GLN n 2 105 ALA n 2 106 SER n 2 107 ASN n 2 108 LEU n 2 109 HIS n 2 110 GLU n 2 111 GLN n 2 112 LYS n 2 113 LYS n 2 114 ALA n 2 115 GLY n 2 116 VAL n 2 117 ILE n 2 118 PHE n 2 119 GLU n 2 120 ALA n 2 121 ASP n 2 122 GLU n 2 123 VAL n 2 124 ILE n 2 125 THR n 2 126 LEU n 2 127 LEU n 2 128 THR n 2 129 SER n 2 130 VAL n 2 131 LEU n 2 132 LYS n 2 133 THR n 2 134 SER n 2 135 SER n 2 136 ALA n 2 137 SER n 2 138 ARG n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'B, ECOK12F047, F plasmid, sopB' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K-12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'artificial gene, codon optimized for e. coli expression' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'The DNA was chemically synthesized.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC U . n A 1 2 DT 2 2 2 DT DT U . n A 1 3 DG 3 3 3 DG DG U . n A 1 4 DG 4 4 4 DG DG U . n A 1 5 DG 5 5 5 DG DG U . n A 1 6 DA 6 6 6 DA DA U . n A 1 7 DC 7 7 7 DC DC U . n A 1 8 DC 8 8 8 DC DC U . n A 1 9 DA 9 9 9 DA DA U . n A 1 10 DT 10 10 10 DT DT U . n A 1 11 DG 11 11 11 DG DG U . n A 1 12 DG 12 12 12 DG DG U . n A 1 13 DT 13 13 13 DT DT U . n A 1 14 DC 14 14 14 DC DC U . n A 1 15 DC 15 15 15 DC DC U . n A 1 16 DC 16 16 16 DC DC U . n A 1 17 DA 17 17 17 DA DA U . n A 1 18 DG 18 18 18 DG DG U . n B 1 1 DC 1 1 1 DC DC T . n B 1 2 DT 2 2 2 DT DT T . n B 1 3 DG 3 3 3 DG DG T . n B 1 4 DG 4 4 4 DG DG T . n B 1 5 DG 5 5 5 DG DG T . n B 1 6 DA 6 6 6 DA DA T . n B 1 7 DC 7 7 7 DC DC T . n B 1 8 DC 8 8 8 DC DC T . n B 1 9 DA 9 9 9 DA DA T . n B 1 10 DT 10 10 10 DT DT T . n B 1 11 DG 11 11 11 DG DG T . n B 1 12 DG 12 12 12 DG DG T . n B 1 13 DT 13 13 13 DT DT T . n B 1 14 DC 14 14 14 DC DC T . n B 1 15 DC 15 15 15 DC DC T . n B 1 16 DC 16 16 16 DC DC T . n B 1 17 DA 17 17 17 DA DA T . n B 1 18 DG 18 18 18 DG DG T . n C 2 1 MET 1 135 ? ? ? B . n C 2 2 GLY 2 136 ? ? ? B . n C 2 3 SER 3 137 ? ? ? B . n C 2 4 SER 4 138 ? ? ? B . n C 2 5 HIS 5 139 ? ? ? B . n C 2 6 HIS 6 140 ? ? ? B . n C 2 7 HIS 7 141 ? ? ? B . n C 2 8 HIS 8 142 ? ? ? B . n C 2 9 HIS 9 143 ? ? ? B . n C 2 10 HIS 10 144 ? ? ? B . n C 2 11 SER 11 145 ? ? ? B . n C 2 12 SER 12 146 ? ? ? B . n C 2 13 GLY 13 147 ? ? ? B . n C 2 14 LEU 14 148 ? ? ? B . n C 2 15 VAL 15 149 ? ? ? B . n C 2 16 PRO 16 150 ? ? ? B . n C 2 17 ARG 17 151 ? ? ? B . n C 2 18 GLY 18 152 ? ? ? B . n C 2 19 SER 19 153 ? ? ? B . n C 2 20 HIS 20 154 ? ? ? B . n C 2 21 TYR 21 155 ? ? ? B . n C 2 22 ARG 22 156 ? ? ? B . n C 2 23 PRO 23 157 157 PRO PRO B . n C 2 24 THR 24 158 158 THR THR B . n C 2 25 SER 25 159 159 SER SER B . n C 2 26 ALA 26 160 160 ALA ALA B . n C 2 27 TYR 27 161 161 TYR TYR B . n C 2 28 GLU 28 162 162 GLU GLU B . n C 2 29 ARG 29 163 163 ARG ARG B . n C 2 30 GLY 30 164 164 GLY GLY B . n C 2 31 GLN 31 165 165 GLN GLN B . n C 2 32 ARG 32 166 166 ARG ARG B . n C 2 33 TYR 33 167 167 TYR TYR B . n C 2 34 ALA 34 168 168 ALA ALA B . n C 2 35 SER 35 169 169 SER SER B . n C 2 36 ARG 36 170 170 ARG ARG B . n C 2 37 LEU 37 171 171 LEU LEU B . n C 2 38 GLN 38 172 172 GLN GLN B . n C 2 39 ASN 39 173 173 ASN ASN B . n C 2 40 GLU 40 174 174 GLU GLU B . n C 2 41 PHE 41 175 175 PHE PHE B . n C 2 42 ALA 42 176 176 ALA ALA B . n C 2 43 GLY 43 177 177 GLY GLY B . n C 2 44 ASN 44 178 178 ASN ASN B . n C 2 45 ILE 45 179 179 ILE ILE B . n C 2 46 SER 46 180 180 SER SER B . n C 2 47 ALA 47 181 181 ALA ALA B . n C 2 48 LEU 48 182 182 LEU LEU B . n C 2 49 ALA 49 183 183 ALA ALA B . n C 2 50 ASP 50 184 184 ASP ASP B . n C 2 51 ALA 51 185 185 ALA ALA B . n C 2 52 GLU 52 186 186 GLU GLU B . n C 2 53 ASN 53 187 187 ASN ASN B . n C 2 54 ILE 54 188 188 ILE ILE B . n C 2 55 SER 55 189 189 SER SER B . n C 2 56 ARG 56 190 190 ARG ARG B . n C 2 57 LYS 57 191 191 LYS LYS B . n C 2 58 ILE 58 192 192 ILE ILE B . n C 2 59 ILE 59 193 193 ILE ILE B . n C 2 60 THR 60 194 194 THR THR B . n C 2 61 ARG 61 195 195 ARG ARG B . n C 2 62 CYS 62 196 196 CYS CYS B . n C 2 63 ILE 63 197 197 ILE ILE B . n C 2 64 ASN 64 198 198 ASN ASN B . n C 2 65 THR 65 199 199 THR THR B . n C 2 66 ALA 66 200 200 ALA ALA B . n C 2 67 LYS 67 201 201 LYS LYS B . n C 2 68 LEU 68 202 202 LEU LEU B . n C 2 69 PRO 69 203 203 PRO PRO B . n C 2 70 LYS 70 204 204 LYS LYS B . n C 2 71 SER 71 205 205 SER SER B . n C 2 72 VAL 72 206 206 VAL VAL B . n C 2 73 VAL 73 207 207 VAL VAL B . n C 2 74 ALA 74 208 208 ALA ALA B . n C 2 75 LEU 75 209 209 LEU LEU B . n C 2 76 PHE 76 210 210 PHE PHE B . n C 2 77 SER 77 211 211 SER SER B . n C 2 78 HIS 78 212 212 HIS HIS B . n C 2 79 PRO 79 213 213 PRO PRO B . n C 2 80 GLY 80 214 214 GLY GLY B . n C 2 81 GLU 81 215 215 GLU GLU B . n C 2 82 LEU 82 216 216 LEU LEU B . n C 2 83 SER 83 217 217 SER SER B . n C 2 84 ALA 84 218 218 ALA ALA B . n C 2 85 ARG 85 219 219 ARG ARG B . n C 2 86 SER 86 220 220 SER SER B . n C 2 87 GLY 87 221 221 GLY GLY B . n C 2 88 ASP 88 222 222 ASP ASP B . n C 2 89 ALA 89 223 223 ALA ALA B . n C 2 90 LEU 90 224 224 LEU LEU B . n C 2 91 GLN 91 225 225 GLN GLN B . n C 2 92 LYS 92 226 226 LYS LYS B . n C 2 93 ALA 93 227 227 ALA ALA B . n C 2 94 PHE 94 228 228 PHE PHE B . n C 2 95 THR 95 229 229 THR THR B . n C 2 96 ASP 96 230 230 ASP ASP B . n C 2 97 LYS 97 231 231 LYS LYS B . n C 2 98 GLU 98 232 232 GLU GLU B . n C 2 99 GLU 99 233 233 GLU GLU B . n C 2 100 LEU 100 234 234 LEU LEU B . n C 2 101 LEU 101 235 235 LEU LEU B . n C 2 102 LYS 102 236 236 LYS LYS B . n C 2 103 GLN 103 237 237 GLN GLN B . n C 2 104 GLN 104 238 238 GLN GLN B . n C 2 105 ALA 105 239 239 ALA ALA B . n C 2 106 SER 106 240 240 SER SER B . n C 2 107 ASN 107 241 241 ASN ASN B . n C 2 108 LEU 108 242 242 LEU LEU B . n C 2 109 HIS 109 243 243 HIS HIS B . n C 2 110 GLU 110 244 244 GLU GLU B . n C 2 111 GLN 111 245 245 GLN GLN B . n C 2 112 LYS 112 246 246 LYS LYS B . n C 2 113 LYS 113 247 247 LYS LYS B . n C 2 114 ALA 114 248 248 ALA ALA B . n C 2 115 GLY 115 249 249 GLY GLY B . n C 2 116 VAL 116 250 250 VAL VAL B . n C 2 117 ILE 117 251 251 ILE ILE B . n C 2 118 PHE 118 252 252 PHE PHE B . n C 2 119 GLU 119 253 253 GLU GLU B . n C 2 120 ALA 120 254 254 ALA ALA B . n C 2 121 ASP 121 255 255 ASP ASP B . n C 2 122 GLU 122 256 256 GLU GLU B . n C 2 123 VAL 123 257 257 VAL VAL B . n C 2 124 ILE 124 258 258 ILE ILE B . n C 2 125 THR 125 259 259 THR THR B . n C 2 126 LEU 126 260 260 LEU LEU B . n C 2 127 LEU 127 261 261 LEU LEU B . n C 2 128 THR 128 262 262 THR THR B . n C 2 129 SER 129 263 263 SER SER B . n C 2 130 VAL 130 264 264 VAL VAL B . n C 2 131 LEU 131 265 265 LEU LEU B . n C 2 132 LYS 132 266 266 LYS LYS B . n C 2 133 THR 133 267 267 THR THR B . n C 2 134 SER 134 268 268 SER SER B . n C 2 135 SER 135 269 269 SER SER B . n C 2 136 ALA 136 270 270 ALA ALA B . n C 2 137 SER 137 271 271 SER ALA B . n C 2 138 ARG 138 272 ? ? ? B . n D 2 1 MET 1 135 ? ? ? P . n D 2 2 GLY 2 136 ? ? ? P . n D 2 3 SER 3 137 ? ? ? P . n D 2 4 SER 4 138 ? ? ? P . n D 2 5 HIS 5 139 ? ? ? P . n D 2 6 HIS 6 140 ? ? ? P . n D 2 7 HIS 7 141 ? ? ? P . n D 2 8 HIS 8 142 ? ? ? P . n D 2 9 HIS 9 143 ? ? ? P . n D 2 10 HIS 10 144 ? ? ? P . n D 2 11 SER 11 145 ? ? ? P . n D 2 12 SER 12 146 ? ? ? P . n D 2 13 GLY 13 147 ? ? ? P . n D 2 14 LEU 14 148 ? ? ? P . n D 2 15 VAL 15 149 ? ? ? P . n D 2 16 PRO 16 150 ? ? ? P . n D 2 17 ARG 17 151 ? ? ? P . n D 2 18 GLY 18 152 ? ? ? P . n D 2 19 SER 19 153 ? ? ? P . n D 2 20 HIS 20 154 ? ? ? P . n D 2 21 TYR 21 155 ? ? ? P . n D 2 22 ARG 22 156 ? ? ? P . n D 2 23 PRO 23 157 157 PRO PRO P . n D 2 24 THR 24 158 158 THR THR P . n D 2 25 SER 25 159 159 SER SER P . n D 2 26 ALA 26 160 160 ALA ALA P . n D 2 27 TYR 27 161 161 TYR TYR P . n D 2 28 GLU 28 162 162 GLU GLU P . n D 2 29 ARG 29 163 163 ARG ARG P . n D 2 30 GLY 30 164 164 GLY GLY P . n D 2 31 GLN 31 165 165 GLN GLN P . n D 2 32 ARG 32 166 166 ARG ARG P . n D 2 33 TYR 33 167 167 TYR TYR P . n D 2 34 ALA 34 168 168 ALA ALA P . n D 2 35 SER 35 169 169 SER SER P . n D 2 36 ARG 36 170 170 ARG ARG P . n D 2 37 LEU 37 171 171 LEU LEU P . n D 2 38 GLN 38 172 172 GLN GLN P . n D 2 39 ASN 39 173 173 ASN ASN P . n D 2 40 GLU 40 174 174 GLU GLU P . n D 2 41 PHE 41 175 175 PHE PHE P . n D 2 42 ALA 42 176 176 ALA ALA P . n D 2 43 GLY 43 177 177 GLY GLY P . n D 2 44 ASN 44 178 178 ASN ASN P . n D 2 45 ILE 45 179 179 ILE ILE P . n D 2 46 SER 46 180 180 SER SER P . n D 2 47 ALA 47 181 181 ALA ALA P . n D 2 48 LEU 48 182 182 LEU LEU P . n D 2 49 ALA 49 183 183 ALA ALA P . n D 2 50 ASP 50 184 184 ASP ASP P . n D 2 51 ALA 51 185 185 ALA ALA P . n D 2 52 GLU 52 186 186 GLU GLU P . n D 2 53 ASN 53 187 187 ASN ASN P . n D 2 54 ILE 54 188 188 ILE ILE P . n D 2 55 SER 55 189 189 SER SER P . n D 2 56 ARG 56 190 190 ARG ARG P . n D 2 57 LYS 57 191 191 LYS LYS P . n D 2 58 ILE 58 192 192 ILE ILE P . n D 2 59 ILE 59 193 193 ILE ILE P . n D 2 60 THR 60 194 194 THR THR P . n D 2 61 ARG 61 195 195 ARG ARG P . n D 2 62 CYS 62 196 196 CYS CYS P . n D 2 63 ILE 63 197 197 ILE ILE P . n D 2 64 ASN 64 198 198 ASN ASN P . n D 2 65 THR 65 199 199 THR THR P . n D 2 66 ALA 66 200 200 ALA ALA P . n D 2 67 LYS 67 201 201 LYS LYS P . n D 2 68 LEU 68 202 202 LEU LEU P . n D 2 69 PRO 69 203 203 PRO PRO P . n D 2 70 LYS 70 204 204 LYS LYS P . n D 2 71 SER 71 205 205 SER SER P . n D 2 72 VAL 72 206 206 VAL VAL P . n D 2 73 VAL 73 207 207 VAL VAL P . n D 2 74 ALA 74 208 208 ALA ALA P . n D 2 75 LEU 75 209 209 LEU LEU P . n D 2 76 PHE 76 210 210 PHE PHE P . n D 2 77 SER 77 211 211 SER SER P . n D 2 78 HIS 78 212 212 HIS HIS P . n D 2 79 PRO 79 213 213 PRO PRO P . n D 2 80 GLY 80 214 214 GLY GLY P . n D 2 81 GLU 81 215 215 GLU GLU P . n D 2 82 LEU 82 216 216 LEU LEU P . n D 2 83 SER 83 217 217 SER SER P . n D 2 84 ALA 84 218 218 ALA ALA P . n D 2 85 ARG 85 219 219 ARG ARG P . n D 2 86 SER 86 220 220 SER SER P . n D 2 87 GLY 87 221 221 GLY GLY P . n D 2 88 ASP 88 222 222 ASP ASP P . n D 2 89 ALA 89 223 223 ALA ALA P . n D 2 90 LEU 90 224 224 LEU LEU P . n D 2 91 GLN 91 225 225 GLN GLN P . n D 2 92 LYS 92 226 226 LYS LYS P . n D 2 93 ALA 93 227 227 ALA ALA P . n D 2 94 PHE 94 228 228 PHE PHE P . n D 2 95 THR 95 229 229 THR THR P . n D 2 96 ASP 96 230 230 ASP ASP P . n D 2 97 LYS 97 231 231 LYS LYS P . n D 2 98 GLU 98 232 232 GLU GLU P . n D 2 99 GLU 99 233 233 GLU GLU P . n D 2 100 LEU 100 234 234 LEU LEU P . n D 2 101 LEU 101 235 235 LEU LEU P . n D 2 102 LYS 102 236 236 LYS LYS P . n D 2 103 GLN 103 237 237 GLN GLN P . n D 2 104 GLN 104 238 238 GLN GLN P . n D 2 105 ALA 105 239 239 ALA ALA P . n D 2 106 SER 106 240 240 SER SER P . n D 2 107 ASN 107 241 241 ASN ASN P . n D 2 108 LEU 108 242 242 LEU LEU P . n D 2 109 HIS 109 243 243 HIS HIS P . n D 2 110 GLU 110 244 244 GLU GLU P . n D 2 111 GLN 111 245 245 GLN GLN P . n D 2 112 LYS 112 246 246 LYS LYS P . n D 2 113 LYS 113 247 247 LYS LYS P . n D 2 114 ALA 114 248 248 ALA ALA P . n D 2 115 GLY 115 249 249 GLY GLY P . n D 2 116 VAL 116 250 250 VAL VAL P . n D 2 117 ILE 117 251 251 ILE ILE P . n D 2 118 PHE 118 252 252 PHE PHE P . n D 2 119 GLU 119 253 253 GLU GLU P . n D 2 120 ALA 120 254 254 ALA ALA P . n D 2 121 ASP 121 255 255 ASP ASP P . n D 2 122 GLU 122 256 256 GLU GLU P . n D 2 123 VAL 123 257 257 VAL VAL P . n D 2 124 ILE 124 258 258 ILE ILE P . n D 2 125 THR 125 259 259 THR THR P . n D 2 126 LEU 126 260 260 LEU LEU P . n D 2 127 LEU 127 261 261 LEU LEU P . n D 2 128 THR 128 262 262 THR THR P . n D 2 129 SER 129 263 263 SER SER P . n D 2 130 VAL 130 264 264 VAL VAL P . n D 2 131 LEU 131 265 265 LEU LEU P . n D 2 132 LYS 132 266 266 LYS LYS P . n D 2 133 THR 133 267 267 THR THR P . n D 2 134 SER 134 268 268 SER SER P . n D 2 135 SER 135 269 269 SER SER P . n D 2 136 ALA 136 270 270 ALA ALA P . n D 2 137 SER 137 271 271 SER ALA P . n D 2 138 ARG 138 272 ? ? ? P . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 1 936 936 SO4 SO4 B . F 3 SO4 1 836 836 SO4 SO4 B . G 3 SO4 1 835 835 SO4 SO4 B . H 3 SO4 1 273 135 SO4 SO4 P . I 3 SO4 1 274 235 SO4 SO4 P . J 3 SO4 1 335 335 SO4 SO4 P . K 3 SO4 1 435 435 SO4 SO4 P . L 3 SO4 1 865 865 SO4 SO4 P . M 3 SO4 1 965 965 SO4 SO4 P . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 U DC 1 ? "O5'" ? A DC 1 "O5'" 2 1 Y 1 B SER 271 ? OG ? C SER 137 OG 3 1 Y 1 P SER 271 ? OG ? D SER 137 OG # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 MOLREP phasing . ? 2 CNS refinement 1.2 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 3MKW _cell.length_a 200.460 _cell.length_b 200.460 _cell.length_c 200.460 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3MKW _symmetry.space_group_name_H-M 'I 2 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3MKW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 8.12 _exptl_crystal.density_percent_sol 84.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '25.5% PEG 4000, 0.17 M lithium sulphate, 0.1 M Tris pH 8.0, 15% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4r' _diffrn_detector.pdbx_collection_date 2008-10-12 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator graphite _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.03 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.03 # _reflns.entry_id 3MKW _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 100 _reflns.d_resolution_high 2.99 _reflns.number_obs 26809 _reflns.number_all 26809 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value 0.06 _reflns.pdbx_netI_over_sigmaI 10.6 _reflns.B_iso_Wilson_estimate 0.2 _reflns.pdbx_redundancy 5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.99 _reflns_shell.d_res_low 3.10 _reflns_shell.percent_possible_all 99.0 _reflns_shell.Rmerge_I_obs 0.448 _reflns_shell.pdbx_Rsym_value 0.448 _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_redundancy 4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2800 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3MKW _refine.ls_number_reflns_obs 26808 _refine.ls_number_reflns_all 26800 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 500.03 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 100.23 _refine.ls_d_res_high 2.99 _refine.ls_percent_reflns_obs 98.5 _refine.ls_R_factor_obs 0.233 _refine.ls_R_factor_all 0.234 _refine.ls_R_factor_R_work 0.233 _refine.ls_R_factor_R_free 0.268 _refine.ls_R_factor_R_free_error 0.005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 2666 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 71.6 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.35 _refine.solvent_model_param_bsol 73.0147 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model 'the FL SopB-18mer I23' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3MKW _refine_analyze.Luzzati_coordinate_error_obs 0.45 _refine_analyze.Luzzati_sigma_a_obs 0.49 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.43 _refine_analyze.Luzzati_sigma_a_free 0.53 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1754 _refine_hist.pdbx_number_atoms_nucleic_acid 731 _refine_hist.pdbx_number_atoms_ligand 45 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2530 _refine_hist.d_res_high 2.99 _refine_hist.d_res_low 100.23 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 17.4 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.04 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.99 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 3.49 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 3.92 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 6.06 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.99 _refine_ls_shell.d_res_low 3.18 _refine_ls_shell.number_reflns_R_work 3982 _refine_ls_shell.R_factor_R_work 0.443 _refine_ls_shell.percent_reflns_obs 99.6 _refine_ls_shell.R_factor_R_free 0.417 _refine_ls_shell.R_factor_R_free_error 0.019 _refine_ls_shell.percent_reflns_R_free 10.8 _refine_ls_shell.number_reflns_R_free 480 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 dna-rna_rep.param dna-rna.top 'X-RAY DIFFRACTION' # _struct_ncs_dom.id 1 _struct_ncs_dom.details ? _struct_ncs_dom.pdbx_ens_id 1 # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _database_PDB_matrix.entry_id 3MKW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3MKW _struct.title 'Structure of sopB(155-272)-18mer complex, I23 form' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MKW _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'segregation, sopB, F plasmid, centromere, DNA BINDING PROTEIN-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SOPB_ECOLI P62558 2 ;YRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHPGELSARSGDALQKAFTDKEEL LKQQASNLHEQKKAGVIFEAEEVITLLTSVLKTSSASR ; 155 ? 2 PDB 3MKW 3MKW 1 CTGGGACCATGGTCCCAG 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3MKW B 21 ? 138 ? P62558 155 ? 272 ? 155 272 2 1 3MKW P 21 ? 138 ? P62558 155 ? 272 ? 155 272 3 2 3MKW U 1 ? 18 ? 3MKW 1 ? 18 ? 1 18 4 2 3MKW T 1 ? 18 ? 3MKW 1 ? 18 ? 1 18 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3MKW MET B 1 ? UNP P62558 ? ? 'expression tag' 135 1 1 3MKW GLY B 2 ? UNP P62558 ? ? 'expression tag' 136 2 1 3MKW SER B 3 ? UNP P62558 ? ? 'expression tag' 137 3 1 3MKW SER B 4 ? UNP P62558 ? ? 'expression tag' 138 4 1 3MKW HIS B 5 ? UNP P62558 ? ? 'expression tag' 139 5 1 3MKW HIS B 6 ? UNP P62558 ? ? 'expression tag' 140 6 1 3MKW HIS B 7 ? UNP P62558 ? ? 'expression tag' 141 7 1 3MKW HIS B 8 ? UNP P62558 ? ? 'expression tag' 142 8 1 3MKW HIS B 9 ? UNP P62558 ? ? 'expression tag' 143 9 1 3MKW HIS B 10 ? UNP P62558 ? ? 'expression tag' 144 10 1 3MKW SER B 11 ? UNP P62558 ? ? 'expression tag' 145 11 1 3MKW SER B 12 ? UNP P62558 ? ? 'expression tag' 146 12 1 3MKW GLY B 13 ? UNP P62558 ? ? 'expression tag' 147 13 1 3MKW LEU B 14 ? UNP P62558 ? ? 'expression tag' 148 14 1 3MKW VAL B 15 ? UNP P62558 ? ? 'expression tag' 149 15 1 3MKW PRO B 16 ? UNP P62558 ? ? 'expression tag' 150 16 1 3MKW ARG B 17 ? UNP P62558 ? ? 'expression tag' 151 17 1 3MKW GLY B 18 ? UNP P62558 ? ? 'expression tag' 152 18 1 3MKW SER B 19 ? UNP P62558 ? ? 'expression tag' 153 19 1 3MKW HIS B 20 ? UNP P62558 ? ? 'expression tag' 154 20 1 3MKW ASP B 121 ? UNP P62558 GLU 255 conflict 255 21 2 3MKW MET P 1 ? UNP P62558 ? ? 'expression tag' 135 22 2 3MKW GLY P 2 ? UNP P62558 ? ? 'expression tag' 136 23 2 3MKW SER P 3 ? UNP P62558 ? ? 'expression tag' 137 24 2 3MKW SER P 4 ? UNP P62558 ? ? 'expression tag' 138 25 2 3MKW HIS P 5 ? UNP P62558 ? ? 'expression tag' 139 26 2 3MKW HIS P 6 ? UNP P62558 ? ? 'expression tag' 140 27 2 3MKW HIS P 7 ? UNP P62558 ? ? 'expression tag' 141 28 2 3MKW HIS P 8 ? UNP P62558 ? ? 'expression tag' 142 29 2 3MKW HIS P 9 ? UNP P62558 ? ? 'expression tag' 143 30 2 3MKW HIS P 10 ? UNP P62558 ? ? 'expression tag' 144 31 2 3MKW SER P 11 ? UNP P62558 ? ? 'expression tag' 145 32 2 3MKW SER P 12 ? UNP P62558 ? ? 'expression tag' 146 33 2 3MKW GLY P 13 ? UNP P62558 ? ? 'expression tag' 147 34 2 3MKW LEU P 14 ? UNP P62558 ? ? 'expression tag' 148 35 2 3MKW VAL P 15 ? UNP P62558 ? ? 'expression tag' 149 36 2 3MKW PRO P 16 ? UNP P62558 ? ? 'expression tag' 150 37 2 3MKW ARG P 17 ? UNP P62558 ? ? 'expression tag' 151 38 2 3MKW GLY P 18 ? UNP P62558 ? ? 'expression tag' 152 39 2 3MKW SER P 19 ? UNP P62558 ? ? 'expression tag' 153 40 2 3MKW HIS P 20 ? UNP P62558 ? ? 'expression tag' 154 41 2 3MKW ASP P 121 ? UNP P62558 GLU 255 conflict 255 42 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? tetrameric 4 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 6810 ? 2 MORE -169 ? 2 'SSA (A^2)' 16940 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M 2 1 D,H,I,J,K,L,M 2 2 A,B,C,E,F,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 19_655 -z+3/2,-x+1/2,y+1/2 0.0000000000 0.0000000000 -1.0000000000 300.6900000000 -1.0000000000 0.0000000000 0.0000000000 100.2300000000 0.0000000000 1.0000000000 0.0000000000 100.2300000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER C 25 ? ASN C 39 ? SER B 159 ASN B 173 1 ? 15 HELX_P HELX_P2 2 ASN C 44 ? ASN C 53 ? ASN B 178 ASN B 187 1 ? 10 HELX_P HELX_P3 3 SER C 55 ? LEU C 68 ? SER B 189 LEU B 202 1 ? 14 HELX_P HELX_P4 4 PRO C 69 ? LEU C 75 ? PRO B 203 LEU B 209 1 ? 7 HELX_P HELX_P5 5 HIS C 78 ? LEU C 82 ? HIS B 212 LEU B 216 5 ? 5 HELX_P HELX_P6 6 SER C 83 ? PHE C 94 ? SER B 217 PHE B 228 1 ? 12 HELX_P HELX_P7 7 LYS C 97 ? ALA C 114 ? LYS B 231 ALA B 248 1 ? 18 HELX_P HELX_P8 8 GLU C 119 ? VAL C 130 ? GLU B 253 VAL B 264 1 ? 12 HELX_P HELX_P9 9 LEU C 131 ? ALA C 136 ? LEU B 265 ALA B 270 5 ? 6 HELX_P HELX_P10 10 SER D 25 ? ASN D 39 ? SER P 159 ASN P 173 1 ? 15 HELX_P HELX_P11 11 ASN D 44 ? ASN D 53 ? ASN P 178 ASN P 187 1 ? 10 HELX_P HELX_P12 12 SER D 55 ? LYS D 67 ? SER P 189 LYS P 201 1 ? 13 HELX_P HELX_P13 13 PRO D 69 ? LEU D 75 ? PRO P 203 LEU P 209 1 ? 7 HELX_P HELX_P14 14 HIS D 78 ? LEU D 82 ? HIS P 212 LEU P 216 5 ? 5 HELX_P HELX_P15 15 SER D 83 ? THR D 95 ? SER P 217 THR P 229 1 ? 13 HELX_P HELX_P16 16 LYS D 97 ? ALA D 114 ? LYS P 231 ALA P 248 1 ? 18 HELX_P HELX_P17 17 ALA D 120 ? VAL D 130 ? ALA P 254 VAL P 264 1 ? 11 HELX_P HELX_P18 18 LYS D 132 ? SER D 137 ? LYS P 266 SER P 271 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 18 N1 ? ? U DC 1 T DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 18 O6 ? ? U DC 1 T DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 18 N2 ? ? U DC 1 T DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 17 N1 ? ? U DT 2 T DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 17 N6 ? ? U DT 2 T DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 16 N3 ? ? U DG 3 T DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 16 O2 ? ? U DG 3 T DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 16 N4 ? ? U DG 3 T DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 15 N3 ? ? U DG 4 T DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 15 O2 ? ? U DG 4 T DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 15 N4 ? ? U DG 4 T DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 14 N3 ? ? U DG 5 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 14 O2 ? ? U DG 5 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 14 N4 ? ? U DG 5 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 13 N3 ? ? U DA 6 T DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 13 O4 ? ? U DA 6 T DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 12 N1 ? ? U DC 7 T DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 12 O6 ? ? U DC 7 T DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 12 N2 ? ? U DC 7 T DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 11 N1 ? ? U DC 8 T DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 11 O6 ? ? U DC 8 T DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 11 N2 ? ? U DC 8 T DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 10 N3 ? ? U DA 9 T DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 10 O4 ? ? U DA 9 T DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 9 N1 ? ? U DT 10 T DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 9 N6 ? ? U DT 10 T DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 8 N3 ? ? U DG 11 T DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 8 O2 ? ? U DG 11 T DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 8 N4 ? ? U DG 11 T DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 7 N3 ? ? U DG 12 T DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 7 O2 ? ? U DG 12 T DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 7 N4 ? ? U DG 12 T DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DA 6 N1 ? ? U DT 13 T DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DA 6 N6 ? ? U DT 13 T DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 14 N3 ? ? ? 1_555 B DG 5 N1 ? ? U DC 14 T DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 14 N4 ? ? ? 1_555 B DG 5 O6 ? ? U DC 14 T DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 14 O2 ? ? ? 1_555 B DG 5 N2 ? ? U DC 14 T DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 15 N3 ? ? ? 1_555 B DG 4 N1 ? ? U DC 15 T DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 15 N4 ? ? ? 1_555 B DG 4 O6 ? ? U DC 15 T DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 15 O2 ? ? ? 1_555 B DG 4 N2 ? ? U DC 15 T DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 3 N1 ? ? U DC 16 T DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 3 O6 ? ? U DC 16 T DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 3 N2 ? ? U DC 16 T DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DA 17 N1 ? ? ? 1_555 B DT 2 N3 ? ? U DA 17 T DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DA 17 N6 ? ? ? 1_555 B DT 2 O4 ? ? U DA 17 T DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DG 18 N1 ? ? ? 1_555 B DC 1 N3 ? ? U DG 18 T DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DG 18 N2 ? ? ? 1_555 B DC 1 O2 ? ? U DG 18 T DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DG 18 O6 ? ? ? 1_555 B DC 1 N4 ? ? U DG 18 T DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B SO4 936 ? 2 'BINDING SITE FOR RESIDUE SO4 B 936' AC2 Software B SO4 836 ? 2 'BINDING SITE FOR RESIDUE SO4 B 836' AC3 Software B SO4 835 ? 3 'BINDING SITE FOR RESIDUE SO4 B 835' AC4 Software P SO4 273 ? 2 'BINDING SITE FOR RESIDUE SO4 P 273' AC5 Software P SO4 274 ? 3 'BINDING SITE FOR RESIDUE SO4 P 274' AC6 Software P SO4 335 ? 8 'BINDING SITE FOR RESIDUE SO4 P 335' AC7 Software P SO4 435 ? 2 'BINDING SITE FOR RESIDUE SO4 P 435' AC8 Software P SO4 865 ? 4 'BINDING SITE FOR RESIDUE SO4 P 865' AC9 Software P SO4 965 ? 3 'BINDING SITE FOR RESIDUE SO4 P 965' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ARG C 56 ? ARG B 190 . ? 1_555 ? 2 AC1 2 DC B 15 ? DC T 15 . ? 1_555 ? 3 AC2 2 ARG C 85 ? ARG B 219 . ? 1_555 ? 4 AC2 2 DC A 7 ? DC U 7 . ? 1_555 ? 5 AC3 3 LYS C 67 ? LYS B 201 . ? 1_555 ? 6 AC3 3 GLN C 91 ? GLN B 225 . ? 1_555 ? 7 AC3 3 GLU C 98 ? GLU B 232 . ? 1_555 ? 8 AC4 2 ARG D 85 ? ARG P 219 . ? 1_555 ? 9 AC4 2 DC B 7 ? DC T 7 . ? 19_655 ? 10 AC5 3 SER D 55 ? SER P 189 . ? 1_555 ? 11 AC5 3 ARG D 56 ? ARG P 190 . ? 1_555 ? 12 AC5 3 DC A 15 ? DC U 15 . ? 19_655 ? 13 AC6 8 LEU D 75 ? LEU P 209 . ? 1_555 ? 14 AC6 8 PHE D 76 ? PHE P 210 . ? 1_555 ? 15 AC6 8 SER D 77 ? SER P 211 . ? 1_555 ? 16 AC6 8 GLU D 81 ? GLU P 215 . ? 1_555 ? 17 AC6 8 LYS D 112 ? LYS P 246 . ? 1_555 ? 18 AC6 8 PHE D 118 ? PHE P 252 . ? 1_555 ? 19 AC6 8 GLU D 119 ? GLU P 253 . ? 1_555 ? 20 AC6 8 ALA D 120 ? ALA P 254 . ? 1_555 ? 21 AC7 2 PRO D 69 ? PRO P 203 . ? 1_555 ? 22 AC7 2 LYS D 70 ? LYS P 204 . ? 1_555 ? 23 AC8 4 LYS D 67 ? LYS P 201 . ? 1_555 ? 24 AC8 4 GLN D 91 ? GLN P 225 . ? 1_555 ? 25 AC8 4 PHE D 94 ? PHE P 228 . ? 1_555 ? 26 AC8 4 GLU D 98 ? GLU P 232 . ? 1_555 ? 27 AC9 3 LEU D 131 ? LEU P 265 . ? 1_555 ? 28 AC9 3 LYS D 132 ? LYS P 266 . ? 1_555 ? 29 AC9 3 THR D 133 ? THR P 267 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN B 173 ? ? -114.63 -79.77 2 1 GLU B 174 ? ? -38.54 -18.93 3 1 PHE B 175 ? ? -142.92 23.80 4 1 LYS B 231 ? ? -150.28 36.93 5 1 ALA B 254 ? ? -39.08 -70.34 6 1 SER B 268 ? ? -54.52 -7.48 7 1 ASN P 173 ? ? -111.59 -91.12 8 1 GLU P 174 ? ? -37.56 -22.34 9 1 ALA P 176 ? ? 27.43 84.47 10 1 SER P 189 ? ? -37.45 145.11 11 1 LYS P 231 ? ? -157.60 34.35 12 1 ALA P 254 ? ? 25.75 -94.23 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT U 2 ? ? 0.068 'SIDE CHAIN' 2 1 DG U 12 ? ? 0.069 'SIDE CHAIN' 3 1 DT T 2 ? ? 0.067 'SIDE CHAIN' 4 1 DG T 12 ? ? 0.078 'SIDE CHAIN' 5 1 DG T 18 ? ? 0.057 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B MET 135 ? C MET 1 2 1 Y 1 B GLY 136 ? C GLY 2 3 1 Y 1 B SER 137 ? C SER 3 4 1 Y 1 B SER 138 ? C SER 4 5 1 Y 1 B HIS 139 ? C HIS 5 6 1 Y 1 B HIS 140 ? C HIS 6 7 1 Y 1 B HIS 141 ? C HIS 7 8 1 Y 1 B HIS 142 ? C HIS 8 9 1 Y 1 B HIS 143 ? C HIS 9 10 1 Y 1 B HIS 144 ? C HIS 10 11 1 Y 1 B SER 145 ? C SER 11 12 1 Y 1 B SER 146 ? C SER 12 13 1 Y 1 B GLY 147 ? C GLY 13 14 1 Y 1 B LEU 148 ? C LEU 14 15 1 Y 1 B VAL 149 ? C VAL 15 16 1 Y 1 B PRO 150 ? C PRO 16 17 1 Y 1 B ARG 151 ? C ARG 17 18 1 Y 1 B GLY 152 ? C GLY 18 19 1 Y 1 B SER 153 ? C SER 19 20 1 Y 1 B HIS 154 ? C HIS 20 21 1 Y 1 B TYR 155 ? C TYR 21 22 1 Y 1 B ARG 156 ? C ARG 22 23 1 Y 1 B ARG 272 ? C ARG 138 24 1 Y 1 P MET 135 ? D MET 1 25 1 Y 1 P GLY 136 ? D GLY 2 26 1 Y 1 P SER 137 ? D SER 3 27 1 Y 1 P SER 138 ? D SER 4 28 1 Y 1 P HIS 139 ? D HIS 5 29 1 Y 1 P HIS 140 ? D HIS 6 30 1 Y 1 P HIS 141 ? D HIS 7 31 1 Y 1 P HIS 142 ? D HIS 8 32 1 Y 1 P HIS 143 ? D HIS 9 33 1 Y 1 P HIS 144 ? D HIS 10 34 1 Y 1 P SER 145 ? D SER 11 35 1 Y 1 P SER 146 ? D SER 12 36 1 Y 1 P GLY 147 ? D GLY 13 37 1 Y 1 P LEU 148 ? D LEU 14 38 1 Y 1 P VAL 149 ? D VAL 15 39 1 Y 1 P PRO 150 ? D PRO 16 40 1 Y 1 P ARG 151 ? D ARG 17 41 1 Y 1 P GLY 152 ? D GLY 18 42 1 Y 1 P SER 153 ? D SER 19 43 1 Y 1 P HIS 154 ? D HIS 20 44 1 Y 1 P TYR 155 ? D TYR 21 45 1 Y 1 P ARG 156 ? D ARG 22 46 1 Y 1 P ARG 272 ? D ARG 138 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 ILE N N N N 301 ILE CA C N S 302 ILE C C N N 303 ILE O O N N 304 ILE CB C N S 305 ILE CG1 C N N 306 ILE CG2 C N N 307 ILE CD1 C N N 308 ILE OXT O N N 309 ILE H H N N 310 ILE H2 H N N 311 ILE HA H N N 312 ILE HB H N N 313 ILE HG12 H N N 314 ILE HG13 H N N 315 ILE HG21 H N N 316 ILE HG22 H N N 317 ILE HG23 H N N 318 ILE HD11 H N N 319 ILE HD12 H N N 320 ILE HD13 H N N 321 ILE HXT H N N 322 LEU N N N N 323 LEU CA C N S 324 LEU C C N N 325 LEU O O N N 326 LEU CB C N N 327 LEU CG C N N 328 LEU CD1 C N N 329 LEU CD2 C N N 330 LEU OXT O N N 331 LEU H H N N 332 LEU H2 H N N 333 LEU HA H N N 334 LEU HB2 H N N 335 LEU HB3 H N N 336 LEU HG H N N 337 LEU HD11 H N N 338 LEU HD12 H N N 339 LEU HD13 H N N 340 LEU HD21 H N N 341 LEU HD22 H N N 342 LEU HD23 H N N 343 LEU HXT H N N 344 LYS N N N N 345 LYS CA C N S 346 LYS C C N N 347 LYS O O N N 348 LYS CB C N N 349 LYS CG C N N 350 LYS CD C N N 351 LYS CE C N N 352 LYS NZ N N N 353 LYS OXT O N N 354 LYS H H N N 355 LYS H2 H N N 356 LYS HA H N N 357 LYS HB2 H N N 358 LYS HB3 H N N 359 LYS HG2 H N N 360 LYS HG3 H N N 361 LYS HD2 H N N 362 LYS HD3 H N N 363 LYS HE2 H N N 364 LYS HE3 H N N 365 LYS HZ1 H N N 366 LYS HZ2 H N N 367 LYS HZ3 H N N 368 LYS HXT H N N 369 MET N N N N 370 MET CA C N S 371 MET C C N N 372 MET O O N N 373 MET CB C N N 374 MET CG C N N 375 MET SD S N N 376 MET CE C N N 377 MET OXT O N N 378 MET H H N N 379 MET H2 H N N 380 MET HA H N N 381 MET HB2 H N N 382 MET HB3 H N N 383 MET HG2 H N N 384 MET HG3 H N N 385 MET HE1 H N N 386 MET HE2 H N N 387 MET HE3 H N N 388 MET HXT H N N 389 PHE N N N N 390 PHE CA C N S 391 PHE C C N N 392 PHE O O N N 393 PHE CB C N N 394 PHE CG C Y N 395 PHE CD1 C Y N 396 PHE CD2 C Y N 397 PHE CE1 C Y N 398 PHE CE2 C Y N 399 PHE CZ C Y N 400 PHE OXT O N N 401 PHE H H N N 402 PHE H2 H N N 403 PHE HA H N N 404 PHE HB2 H N N 405 PHE HB3 H N N 406 PHE HD1 H N N 407 PHE HD2 H N N 408 PHE HE1 H N N 409 PHE HE2 H N N 410 PHE HZ H N N 411 PHE HXT H N N 412 PRO N N N N 413 PRO CA C N S 414 PRO C C N N 415 PRO O O N N 416 PRO CB C N N 417 PRO CG C N N 418 PRO CD C N N 419 PRO OXT O N N 420 PRO H H N N 421 PRO HA H N N 422 PRO HB2 H N N 423 PRO HB3 H N N 424 PRO HG2 H N N 425 PRO HG3 H N N 426 PRO HD2 H N N 427 PRO HD3 H N N 428 PRO HXT H N N 429 SER N N N N 430 SER CA C N S 431 SER C C N N 432 SER O O N N 433 SER CB C N N 434 SER OG O N N 435 SER OXT O N N 436 SER H H N N 437 SER H2 H N N 438 SER HA H N N 439 SER HB2 H N N 440 SER HB3 H N N 441 SER HG H N N 442 SER HXT H N N 443 SO4 S S N N 444 SO4 O1 O N N 445 SO4 O2 O N N 446 SO4 O3 O N N 447 SO4 O4 O N N 448 THR N N N N 449 THR CA C N S 450 THR C C N N 451 THR O O N N 452 THR CB C N R 453 THR OG1 O N N 454 THR CG2 C N N 455 THR OXT O N N 456 THR H H N N 457 THR H2 H N N 458 THR HA H N N 459 THR HB H N N 460 THR HG1 H N N 461 THR HG21 H N N 462 THR HG22 H N N 463 THR HG23 H N N 464 THR HXT H N N 465 TYR N N N N 466 TYR CA C N S 467 TYR C C N N 468 TYR O O N N 469 TYR CB C N N 470 TYR CG C Y N 471 TYR CD1 C Y N 472 TYR CD2 C Y N 473 TYR CE1 C Y N 474 TYR CE2 C Y N 475 TYR CZ C Y N 476 TYR OH O N N 477 TYR OXT O N N 478 TYR H H N N 479 TYR H2 H N N 480 TYR HA H N N 481 TYR HB2 H N N 482 TYR HB3 H N N 483 TYR HD1 H N N 484 TYR HD2 H N N 485 TYR HE1 H N N 486 TYR HE2 H N N 487 TYR HH H N N 488 TYR HXT H N N 489 VAL N N N N 490 VAL CA C N S 491 VAL C C N N 492 VAL O O N N 493 VAL CB C N N 494 VAL CG1 C N N 495 VAL CG2 C N N 496 VAL OXT O N N 497 VAL H H N N 498 VAL H2 H N N 499 VAL HA H N N 500 VAL HB H N N 501 VAL HG11 H N N 502 VAL HG12 H N N 503 VAL HG13 H N N 504 VAL HG21 H N N 505 VAL HG22 H N N 506 VAL HG23 H N N 507 VAL HXT H N N 508 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 ILE N CA sing N N 299 ILE N H sing N N 300 ILE N H2 sing N N 301 ILE CA C sing N N 302 ILE CA CB sing N N 303 ILE CA HA sing N N 304 ILE C O doub N N 305 ILE C OXT sing N N 306 ILE CB CG1 sing N N 307 ILE CB CG2 sing N N 308 ILE CB HB sing N N 309 ILE CG1 CD1 sing N N 310 ILE CG1 HG12 sing N N 311 ILE CG1 HG13 sing N N 312 ILE CG2 HG21 sing N N 313 ILE CG2 HG22 sing N N 314 ILE CG2 HG23 sing N N 315 ILE CD1 HD11 sing N N 316 ILE CD1 HD12 sing N N 317 ILE CD1 HD13 sing N N 318 ILE OXT HXT sing N N 319 LEU N CA sing N N 320 LEU N H sing N N 321 LEU N H2 sing N N 322 LEU CA C sing N N 323 LEU CA CB sing N N 324 LEU CA HA sing N N 325 LEU C O doub N N 326 LEU C OXT sing N N 327 LEU CB CG sing N N 328 LEU CB HB2 sing N N 329 LEU CB HB3 sing N N 330 LEU CG CD1 sing N N 331 LEU CG CD2 sing N N 332 LEU CG HG sing N N 333 LEU CD1 HD11 sing N N 334 LEU CD1 HD12 sing N N 335 LEU CD1 HD13 sing N N 336 LEU CD2 HD21 sing N N 337 LEU CD2 HD22 sing N N 338 LEU CD2 HD23 sing N N 339 LEU OXT HXT sing N N 340 LYS N CA sing N N 341 LYS N H sing N N 342 LYS N H2 sing N N 343 LYS CA C sing N N 344 LYS CA CB sing N N 345 LYS CA HA sing N N 346 LYS C O doub N N 347 LYS C OXT sing N N 348 LYS CB CG sing N N 349 LYS CB HB2 sing N N 350 LYS CB HB3 sing N N 351 LYS CG CD sing N N 352 LYS CG HG2 sing N N 353 LYS CG HG3 sing N N 354 LYS CD CE sing N N 355 LYS CD HD2 sing N N 356 LYS CD HD3 sing N N 357 LYS CE NZ sing N N 358 LYS CE HE2 sing N N 359 LYS CE HE3 sing N N 360 LYS NZ HZ1 sing N N 361 LYS NZ HZ2 sing N N 362 LYS NZ HZ3 sing N N 363 LYS OXT HXT sing N N 364 MET N CA sing N N 365 MET N H sing N N 366 MET N H2 sing N N 367 MET CA C sing N N 368 MET CA CB sing N N 369 MET CA HA sing N N 370 MET C O doub N N 371 MET C OXT sing N N 372 MET CB CG sing N N 373 MET CB HB2 sing N N 374 MET CB HB3 sing N N 375 MET CG SD sing N N 376 MET CG HG2 sing N N 377 MET CG HG3 sing N N 378 MET SD CE sing N N 379 MET CE HE1 sing N N 380 MET CE HE2 sing N N 381 MET CE HE3 sing N N 382 MET OXT HXT sing N N 383 PHE N CA sing N N 384 PHE N H sing N N 385 PHE N H2 sing N N 386 PHE CA C sing N N 387 PHE CA CB sing N N 388 PHE CA HA sing N N 389 PHE C O doub N N 390 PHE C OXT sing N N 391 PHE CB CG sing N N 392 PHE CB HB2 sing N N 393 PHE CB HB3 sing N N 394 PHE CG CD1 doub Y N 395 PHE CG CD2 sing Y N 396 PHE CD1 CE1 sing Y N 397 PHE CD1 HD1 sing N N 398 PHE CD2 CE2 doub Y N 399 PHE CD2 HD2 sing N N 400 PHE CE1 CZ doub Y N 401 PHE CE1 HE1 sing N N 402 PHE CE2 CZ sing Y N 403 PHE CE2 HE2 sing N N 404 PHE CZ HZ sing N N 405 PHE OXT HXT sing N N 406 PRO N CA sing N N 407 PRO N CD sing N N 408 PRO N H sing N N 409 PRO CA C sing N N 410 PRO CA CB sing N N 411 PRO CA HA sing N N 412 PRO C O doub N N 413 PRO C OXT sing N N 414 PRO CB CG sing N N 415 PRO CB HB2 sing N N 416 PRO CB HB3 sing N N 417 PRO CG CD sing N N 418 PRO CG HG2 sing N N 419 PRO CG HG3 sing N N 420 PRO CD HD2 sing N N 421 PRO CD HD3 sing N N 422 PRO OXT HXT sing N N 423 SER N CA sing N N 424 SER N H sing N N 425 SER N H2 sing N N 426 SER CA C sing N N 427 SER CA CB sing N N 428 SER CA HA sing N N 429 SER C O doub N N 430 SER C OXT sing N N 431 SER CB OG sing N N 432 SER CB HB2 sing N N 433 SER CB HB3 sing N N 434 SER OG HG sing N N 435 SER OXT HXT sing N N 436 SO4 S O1 doub N N 437 SO4 S O2 doub N N 438 SO4 S O3 sing N N 439 SO4 S O4 sing N N 440 THR N CA sing N N 441 THR N H sing N N 442 THR N H2 sing N N 443 THR CA C sing N N 444 THR CA CB sing N N 445 THR CA HA sing N N 446 THR C O doub N N 447 THR C OXT sing N N 448 THR CB OG1 sing N N 449 THR CB CG2 sing N N 450 THR CB HB sing N N 451 THR OG1 HG1 sing N N 452 THR CG2 HG21 sing N N 453 THR CG2 HG22 sing N N 454 THR CG2 HG23 sing N N 455 THR OXT HXT sing N N 456 TYR N CA sing N N 457 TYR N H sing N N 458 TYR N H2 sing N N 459 TYR CA C sing N N 460 TYR CA CB sing N N 461 TYR CA HA sing N N 462 TYR C O doub N N 463 TYR C OXT sing N N 464 TYR CB CG sing N N 465 TYR CB HB2 sing N N 466 TYR CB HB3 sing N N 467 TYR CG CD1 doub Y N 468 TYR CG CD2 sing Y N 469 TYR CD1 CE1 sing Y N 470 TYR CD1 HD1 sing N N 471 TYR CD2 CE2 doub Y N 472 TYR CD2 HD2 sing N N 473 TYR CE1 CZ doub Y N 474 TYR CE1 HE1 sing N N 475 TYR CE2 CZ sing Y N 476 TYR CE2 HE2 sing N N 477 TYR CZ OH sing N N 478 TYR OH HH sing N N 479 TYR OXT HXT sing N N 480 VAL N CA sing N N 481 VAL N H sing N N 482 VAL N H2 sing N N 483 VAL CA C sing N N 484 VAL CA CB sing N N 485 VAL CA HA sing N N 486 VAL C O doub N N 487 VAL C OXT sing N N 488 VAL CB CG1 sing N N 489 VAL CB CG2 sing N N 490 VAL CB HB sing N N 491 VAL CG1 HG11 sing N N 492 VAL CG1 HG12 sing N N 493 VAL CG1 HG13 sing N N 494 VAL CG2 HG21 sing N N 495 VAL CG2 HG22 sing N N 496 VAL CG2 HG23 sing N N 497 VAL OXT HXT sing N N 498 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3MKW 'double helix' 3MKW 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 18 1_555 -0.368 -0.392 -0.229 0.020 -10.840 -2.040 1 U_DC1:DG18_T U 1 ? T 18 ? 19 1 1 A DT 2 1_555 B DA 17 1_555 0.373 -0.606 -0.130 -8.212 -2.464 -1.167 2 U_DT2:DA17_T U 2 ? T 17 ? 20 1 1 A DG 3 1_555 B DC 16 1_555 -0.007 -0.285 0.290 3.551 -3.517 -4.807 3 U_DG3:DC16_T U 3 ? T 16 ? 19 1 1 A DG 4 1_555 B DC 15 1_555 -0.218 -0.255 0.043 -2.554 -3.269 -2.717 4 U_DG4:DC15_T U 4 ? T 15 ? 19 1 1 A DG 5 1_555 B DC 14 1_555 -0.399 -0.468 -0.005 1.494 -4.995 0.493 5 U_DG5:DC14_T U 5 ? T 14 ? 19 1 1 A DA 6 1_555 B DT 13 1_555 0.285 -0.281 -0.184 1.574 -4.055 -6.162 6 U_DA6:DT13_T U 6 ? T 13 ? 20 1 1 A DC 7 1_555 B DG 12 1_555 0.144 -0.380 -0.226 7.207 -6.765 4.520 7 U_DC7:DG12_T U 7 ? T 12 ? 19 1 1 A DC 8 1_555 B DG 11 1_555 0.295 -0.523 0.000 -7.004 2.088 -3.805 8 U_DC8:DG11_T U 8 ? T 11 ? 19 1 1 A DA 9 1_555 B DT 10 1_555 0.649 -0.316 -0.326 2.016 -8.028 -6.292 9 U_DA9:DT10_T U 9 ? T 10 ? 20 1 1 A DT 10 1_555 B DA 9 1_555 -0.372 -0.237 -0.234 -3.459 -5.620 -1.405 10 U_DT10:DA9_T U 10 ? T 9 ? 20 1 1 A DG 11 1_555 B DC 8 1_555 -0.326 -0.437 0.125 8.928 0.180 -3.229 11 U_DG11:DC8_T U 11 ? T 8 ? 19 1 1 A DG 12 1_555 B DC 7 1_555 0.260 -0.364 -0.368 -8.814 -6.390 -1.728 12 U_DG12:DC7_T U 12 ? T 7 ? 19 1 1 A DT 13 1_555 B DA 6 1_555 -0.573 -0.336 -0.185 -2.124 -4.769 -8.404 13 U_DT13:DA6_T U 13 ? T 6 ? 20 1 1 A DC 14 1_555 B DG 5 1_555 0.291 -0.309 -0.001 1.875 -4.987 1.048 14 U_DC14:DG5_T U 14 ? T 5 ? 19 1 1 A DC 15 1_555 B DG 4 1_555 0.259 -0.308 0.190 0.623 -1.575 0.410 15 U_DC15:DG4_T U 15 ? T 4 ? 19 1 1 A DC 16 1_555 B DG 3 1_555 -0.096 -0.245 0.304 -2.063 -4.678 -2.197 16 U_DC16:DG3_T U 16 ? T 3 ? 19 1 1 A DA 17 1_555 B DT 2 1_555 -0.077 -0.507 0.047 8.386 -3.389 2.087 17 U_DA17:DT2_T U 17 ? T 2 ? 20 1 1 A DG 18 1_555 B DC 1 1_555 0.010 -0.350 -0.140 -1.182 -10.567 -3.643 18 U_DG18:DC1_T U 18 ? T 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 18 1_555 A DT 2 1_555 B DA 17 1_555 0.471 -0.419 3.578 2.635 7.288 39.403 -1.515 -0.360 3.472 10.684 -3.862 40.128 1 UU_DC1DT2:DA17DG18_TT U 1 ? T 18 ? U 2 ? T 17 ? 1 A DT 2 1_555 B DA 17 1_555 A DG 3 1_555 B DC 16 1_555 -0.190 0.025 3.130 -0.605 1.970 31.333 -0.308 0.243 3.129 3.642 1.118 31.399 2 UU_DT2DG3:DC16DA17_TT U 2 ? T 17 ? U 3 ? T 16 ? 1 A DG 3 1_555 B DC 16 1_555 A DG 4 1_555 B DC 15 1_555 0.649 -0.253 3.492 5.555 1.034 35.934 -0.561 -0.203 3.541 1.663 -8.936 36.361 3 UU_DG3DG4:DC15DC16_TT U 3 ? T 16 ? U 4 ? T 15 ? 1 A DG 4 1_555 B DC 15 1_555 A DG 5 1_555 B DC 14 1_555 -0.486 -0.228 3.289 -1.914 3.032 29.617 -1.078 0.543 3.275 5.904 3.728 29.828 4 UU_DG4DG5:DC14DC15_TT U 4 ? T 15 ? U 5 ? T 14 ? 1 A DG 5 1_555 B DC 14 1_555 A DA 6 1_555 B DT 13 1_555 -0.265 -0.259 3.256 1.019 3.260 40.042 -0.744 0.501 3.218 4.750 -1.484 40.182 5 UU_DG5DA6:DT13DC14_TT U 5 ? T 14 ? U 6 ? T 13 ? 1 A DA 6 1_555 B DT 13 1_555 A DC 7 1_555 B DG 12 1_555 0.906 -1.099 3.156 -2.277 3.860 29.457 -2.890 -2.206 2.915 7.535 4.446 29.788 6 UU_DA6DC7:DG12DT13_TT U 6 ? T 13 ? U 7 ? T 12 ? 1 A DC 7 1_555 B DG 12 1_555 A DC 8 1_555 B DG 11 1_555 -0.931 -1.129 3.584 -2.540 5.796 29.444 -3.448 1.234 3.372 11.241 4.926 30.102 7 UU_DC7DC8:DG11DG12_TT U 7 ? T 12 ? U 8 ? T 11 ? 1 A DC 8 1_555 B DG 11 1_555 A DA 9 1_555 B DT 10 1_555 -0.419 0.718 3.223 5.346 5.259 37.745 0.442 1.296 3.204 8.032 -8.165 38.456 8 UU_DC8DA9:DT10DG11_TT U 8 ? T 11 ? U 9 ? T 10 ? 1 A DA 9 1_555 B DT 10 1_555 A DT 10 1_555 B DA 9 1_555 0.265 -0.811 3.349 -0.544 -4.698 28.008 -0.526 -0.672 3.431 -9.621 1.114 28.396 9 UU_DA9DT10:DA9DT10_TT U 9 ? T 10 ? U 10 ? T 9 ? 1 A DT 10 1_555 B DA 9 1_555 A DG 11 1_555 B DC 8 1_555 0.138 0.906 3.118 -4.438 6.005 37.907 0.651 -0.742 3.184 9.135 6.752 38.608 10 UU_DT10DG11:DC8DA9_TT U 10 ? T 9 ? U 11 ? T 8 ? 1 A DG 11 1_555 B DC 8 1_555 A DG 12 1_555 B DC 7 1_555 0.640 -1.200 3.736 3.204 6.203 30.294 -3.568 -0.508 3.475 11.674 -6.031 31.070 11 UU_DG11DG12:DC7DC8_TT U 11 ? T 8 ? U 12 ? T 7 ? 1 A DG 12 1_555 B DC 7 1_555 A DT 13 1_555 B DA 6 1_555 -0.902 -1.111 3.103 0.751 3.143 26.888 -3.109 2.103 2.930 6.728 -1.608 27.078 12 UU_DG12DT13:DA6DC7_TT U 12 ? T 7 ? U 13 ? T 6 ? 1 A DT 13 1_555 B DA 6 1_555 A DC 14 1_555 B DG 5 1_555 0.401 -0.468 3.204 -0.505 3.149 38.855 -1.073 -0.660 3.153 4.724 0.758 38.980 13 UU_DT13DC14:DG5DA6_TT U 13 ? T 6 ? U 14 ? T 5 ? 1 A DC 14 1_555 B DG 5 1_555 A DC 15 1_555 B DG 4 1_555 0.742 -0.077 3.371 -0.139 4.445 32.446 -0.924 -1.341 3.328 7.908 0.247 32.742 14 UU_DC14DC15:DG4DG5_TT U 14 ? T 5 ? U 15 ? T 4 ? 1 A DC 15 1_555 B DG 4 1_555 A DC 16 1_555 B DG 3 1_555 -0.846 -0.082 3.409 -4.232 -2.000 34.995 0.179 0.733 3.484 -3.307 6.999 35.297 15 UU_DC15DC16:DG3DG4_TT U 15 ? T 4 ? U 16 ? T 3 ? 1 A DC 16 1_555 B DG 3 1_555 A DA 17 1_555 B DT 2 1_555 0.357 0.042 3.191 -0.712 2.025 33.553 -0.250 -0.731 3.180 3.504 1.232 33.619 16 UU_DC16DA17:DT2DG3_TT U 16 ? T 3 ? U 17 ? T 2 ? 1 A DA 17 1_555 B DT 2 1_555 A DG 18 1_555 B DC 1 1_555 -0.712 -0.456 3.508 -2.658 6.836 37.008 -1.651 0.734 3.414 10.641 4.137 37.703 17 UU_DA17DG18:DC1DT2_TT U 17 ? T 2 ? U 18 ? T 1 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'the FL SopB-18mer I23' # _atom_sites.entry_id 3MKW _atom_sites.fract_transf_matrix[1][1] 0.004989 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.004989 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004989 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_