data_3MOJ # _entry.id 3MOJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3MOJ pdb_00003moj 10.2210/pdb3moj/pdb NDB NA0529 ? ? RCSB RCSB058803 ? ? WWPDB D_1000058803 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-08-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3MOJ _pdbx_database_status.recvd_initial_deposition_date 2010-04-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hardin, J.W.' 1 'Hu, Y.' 2 'McKay, D.B.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Structure of the RNA binding domain of a DEAD-box helicase bound to its ribosomal RNA target reveals a novel mode of recognition by an RNA recognition motif. ; J.Mol.Biol. 402 412 427 2010 JMOBAK UK 0022-2836 0070 ? 20673833 10.1016/j.jmb.2010.07.040 1 ;The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold. ; Rna 12 959 967 2006 RNARFU UK 1355-8382 2122 ? 16611943 10.1261/rna.5906 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hardin, J.W.' 1 ? primary 'Hu, Y.X.' 2 ? primary 'McKay, D.B.' 3 ? 1 'Wang, S.' 4 ? 1 'Hu, Y.' 5 ? 1 'Overgaard, M.T.' 6 ? 1 'Karginov, F.V.' 7 ? 1 'Uhlenbeck, O.C.' 8 ? 1 'McKay, D.B.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA (69-MER)' 23860.158 1 ? ? ;E. coli 23 S ribosomal RNA (nucleotides 2508-2580 with GAAA tetraloop in nucleotides 2530-2533 and A2581 at 3' end) ; ? 2 polymer man 'ATP-dependent RNA helicase dbpA' 8291.884 1 3.6.1.- ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGCUCAUCACAUCCUGGGGCUGGAAACGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUA GGCUCAUCACAUCCUGGGGCUGGAAACGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUA A ? 2 'polypeptide(L)' no no MKLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLKVMKNTTVKGKQLKVNKANK MKLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLKVMKNTTVKGKQLKVNKANK B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 U n 1 5 C n 1 6 A n 1 7 U n 1 8 C n 1 9 A n 1 10 C n 1 11 A n 1 12 U n 1 13 C n 1 14 C n 1 15 U n 1 16 G n 1 17 G n 1 18 G n 1 19 G n 1 20 C n 1 21 U n 1 22 G n 1 23 G n 1 24 A n 1 25 A n 1 26 A n 1 27 C n 1 28 G n 1 29 G n 1 30 U n 1 31 C n 1 32 C n 1 33 C n 1 34 A n 1 35 A n 1 36 G n 1 37 G n 1 38 G n 1 39 U n 1 40 A n 1 41 U n 1 42 G n 1 43 G n 1 44 C n 1 45 U n 1 46 G n 1 47 U n 1 48 U n 1 49 C n 1 50 G n 1 51 C n 1 52 C n 1 53 A n 1 54 U n 1 55 U n 1 56 U n 1 57 A n 1 58 A n 1 59 A n 1 60 G n 1 61 U n 1 62 G n 1 63 G n 1 64 U n 1 65 A n 1 66 C n 1 67 G n 1 68 C n 1 69 G n 1 70 A n 1 71 G n 1 72 C n 1 73 U n 1 74 A n 2 1 MET n 2 2 LYS n 2 3 LEU n 2 4 TYR n 2 5 PHE n 2 6 ASN n 2 7 GLY n 2 8 GLY n 2 9 LYS n 2 10 LYS n 2 11 LYS n 2 12 LYS n 2 13 ILE n 2 14 ARG n 2 15 ALA n 2 16 VAL n 2 17 ASP n 2 18 PHE n 2 19 VAL n 2 20 GLY n 2 21 THR n 2 22 ILE n 2 23 ALA n 2 24 LYS n 2 25 ILE n 2 26 ASP n 2 27 GLY n 2 28 VAL n 2 29 SER n 2 30 ALA n 2 31 ASP n 2 32 ASP n 2 33 ILE n 2 34 GLY n 2 35 ILE n 2 36 ILE n 2 37 THR n 2 38 ILE n 2 39 MET n 2 40 ASP n 2 41 ASN n 2 42 ALA n 2 43 SER n 2 44 TYR n 2 45 VAL n 2 46 GLU n 2 47 ILE n 2 48 LEU n 2 49 ASN n 2 50 GLY n 2 51 LYS n 2 52 GLY n 2 53 PRO n 2 54 HIS n 2 55 VAL n 2 56 LEU n 2 57 LYS n 2 58 VAL n 2 59 MET n 2 60 LYS n 2 61 ASN n 2 62 THR n 2 63 THR n 2 64 VAL n 2 65 LYS n 2 66 GLY n 2 67 LYS n 2 68 GLN n 2 69 LEU n 2 70 LYS n 2 71 VAL n 2 72 ASN n 2 73 LYS n 2 74 ALA n 2 75 ASN n 2 76 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? ? ? 'dbpA, deaD, yxiN, BSU39110, SS8E' ? ? ? ? ? ? 'Bacillus subtilis' 1423 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL23(DE3)' ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 2508 2508 G G A . n A 1 2 G 2 2509 2509 G G A . n A 1 3 C 3 2510 2510 C C A . n A 1 4 U 4 2511 2511 U U A . n A 1 5 C 5 2512 2512 C C A . n A 1 6 A 6 2513 2513 A A A . n A 1 7 U 7 2514 2514 U U A . n A 1 8 C 8 2515 2515 C C A . n A 1 9 A 9 2516 2516 A A A . n A 1 10 C 10 2517 2517 C C A . n A 1 11 A 11 2518 2518 A A A . n A 1 12 U 12 2519 2519 U U A . n A 1 13 C 13 2520 2520 C C A . n A 1 14 C 14 2521 2521 C C A . n A 1 15 U 15 2522 2522 U U A . n A 1 16 G 16 2523 2523 G G A . n A 1 17 G 17 2524 2524 G G A . n A 1 18 G 18 2525 2525 G G A . n A 1 19 G 19 2526 2526 G G A . n A 1 20 C 20 2527 2527 C C A . n A 1 21 U 21 2528 2528 U U A . n A 1 22 G 22 2529 2529 G G A . n A 1 23 G 23 2530 2530 G G A . n A 1 24 A 24 2531 2531 A A A . n A 1 25 A 25 2532 2532 A A A . n A 1 26 A 26 2533 2533 A A A . n A 1 27 C 27 2534 2534 C C A . n A 1 28 G 28 2535 2535 G G A . n A 1 29 G 29 2536 2536 G G A . n A 1 30 U 30 2537 2537 U U A . n A 1 31 C 31 2538 2538 C C A . n A 1 32 C 32 2539 2539 C C A . n A 1 33 C 33 2540 2540 C C A . n A 1 34 A 34 2541 2541 A A A . n A 1 35 A 35 2542 2542 A A A . n A 1 36 G 36 2543 2543 G G A . n A 1 37 G 37 2544 2544 G G A . n A 1 38 G 38 2545 2545 G G A . n A 1 39 U 39 2546 2546 U U A . n A 1 40 A 40 2547 2547 A A A . n A 1 41 U 41 2548 2548 U U A . n A 1 42 G 42 2549 2549 G G A . n A 1 43 G 43 2550 2550 G G A . n A 1 44 C 44 2551 2551 C C A . n A 1 45 U 45 2552 2552 U U A . n A 1 46 G 46 2553 2553 G G A . n A 1 47 U 47 2554 2554 U U A . n A 1 48 U 48 2555 2555 U U A . n A 1 49 C 49 2556 2556 C C A . n A 1 50 G 50 2557 2557 G G A . n A 1 51 C 51 2558 2558 C C A . n A 1 52 C 52 2559 2559 C C A . n A 1 53 A 53 2560 2560 A A A . n A 1 54 U 54 2561 2561 U U A . n A 1 55 U 55 2562 2562 U U A . n A 1 56 U 56 2563 2563 U U A . n A 1 57 A 57 2564 2564 A A A . n A 1 58 A 58 2565 2565 A A A . n A 1 59 A 59 2566 2566 A A A . n A 1 60 G 60 2567 2567 G G A . n A 1 61 U 61 2568 2568 U U A . n A 1 62 G 62 2569 2569 G G A . n A 1 63 G 63 2570 2570 G G A . n A 1 64 U 64 2571 2571 U U A . n A 1 65 A 65 2572 ? ? ? A . n A 1 66 C 66 2573 ? ? ? A . n A 1 67 G 67 2574 ? ? ? A . n A 1 68 C 68 2575 ? ? ? A . n A 1 69 G 69 2576 ? ? ? A . n A 1 70 A 70 2577 2577 A A A . n A 1 71 G 71 2578 2578 G G A . n A 1 72 C 72 2579 2579 C C A . n A 1 73 U 73 2580 2580 U U A . n A 1 74 A 74 2581 2581 A A A . n B 2 1 MET 1 404 404 MET MET B . n B 2 2 LYS 2 405 405 LYS LYS B . n B 2 3 LEU 3 406 406 LEU LEU B . n B 2 4 TYR 4 407 407 TYR TYR B . n B 2 5 PHE 5 408 408 PHE PHE B . n B 2 6 ASN 6 409 409 ASN ASN B . n B 2 7 GLY 7 410 410 GLY GLY B . n B 2 8 GLY 8 411 411 GLY GLY B . n B 2 9 LYS 9 412 412 LYS LYS B . n B 2 10 LYS 10 413 413 LYS LYS B . n B 2 11 LYS 11 414 414 LYS LYS B . n B 2 12 LYS 12 415 415 LYS LYS B . n B 2 13 ILE 13 416 416 ILE ILE B . n B 2 14 ARG 14 417 417 ARG ARG B . n B 2 15 ALA 15 418 418 ALA ALA B . n B 2 16 VAL 16 419 419 VAL VAL B . n B 2 17 ASP 17 420 420 ASP ASP B . n B 2 18 PHE 18 421 421 PHE PHE B . n B 2 19 VAL 19 422 422 VAL VAL B . n B 2 20 GLY 20 423 423 GLY GLY B . n B 2 21 THR 21 424 424 THR THR B . n B 2 22 ILE 22 425 425 ILE ILE B . n B 2 23 ALA 23 426 426 ALA ALA B . n B 2 24 LYS 24 427 427 LYS LYS B . n B 2 25 ILE 25 428 428 ILE ILE B . n B 2 26 ASP 26 429 429 ASP ASP B . n B 2 27 GLY 27 430 430 GLY GLY B . n B 2 28 VAL 28 431 431 VAL VAL B . n B 2 29 SER 29 432 432 SER SER B . n B 2 30 ALA 30 433 433 ALA ALA B . n B 2 31 ASP 31 434 434 ASP ASP B . n B 2 32 ASP 32 435 435 ASP ASP B . n B 2 33 ILE 33 436 436 ILE ILE B . n B 2 34 GLY 34 437 437 GLY GLY B . n B 2 35 ILE 35 438 438 ILE ILE B . n B 2 36 ILE 36 439 439 ILE ILE B . n B 2 37 THR 37 440 440 THR THR B . n B 2 38 ILE 38 441 441 ILE ILE B . n B 2 39 MET 39 442 442 MET MET B . n B 2 40 ASP 40 443 443 ASP ASP B . n B 2 41 ASN 41 444 444 ASN ASN B . n B 2 42 ALA 42 445 445 ALA ALA B . n B 2 43 SER 43 446 446 SER SER B . n B 2 44 TYR 44 447 447 TYR TYR B . n B 2 45 VAL 45 448 448 VAL VAL B . n B 2 46 GLU 46 449 449 GLU GLU B . n B 2 47 ILE 47 450 450 ILE ILE B . n B 2 48 LEU 48 451 451 LEU LEU B . n B 2 49 ASN 49 452 452 ASN ASN B . n B 2 50 GLY 50 453 453 GLY GLY B . n B 2 51 LYS 51 454 454 LYS LYS B . n B 2 52 GLY 52 455 455 GLY GLY B . n B 2 53 PRO 53 456 456 PRO PRO B . n B 2 54 HIS 54 457 457 HIS HIS B . n B 2 55 VAL 55 458 458 VAL VAL B . n B 2 56 LEU 56 459 459 LEU LEU B . n B 2 57 LYS 57 460 460 LYS LYS B . n B 2 58 VAL 58 461 461 VAL VAL B . n B 2 59 MET 59 462 462 MET MET B . n B 2 60 LYS 60 463 463 LYS LYS B . n B 2 61 ASN 61 464 464 ASN ASN B . n B 2 62 THR 62 465 465 THR THR B . n B 2 63 THR 63 466 466 THR THR B . n B 2 64 VAL 64 467 467 VAL VAL B . n B 2 65 LYS 65 468 468 LYS LYS B . n B 2 66 GLY 66 469 469 GLY GLY B . n B 2 67 LYS 67 470 470 LYS LYS B . n B 2 68 GLN 68 471 471 GLN GLN B . n B 2 69 LEU 69 472 472 LEU LEU B . n B 2 70 LYS 70 473 473 LYS LYS B . n B 2 71 VAL 71 474 474 VAL VAL B . n B 2 72 ASN 72 475 475 ASN ASN B . n B 2 73 LYS 73 476 476 LYS LYS B . n B 2 74 ALA 74 477 477 ALA ALA B . n B 2 75 ASN 75 478 478 ASN ASN B . n B 2 76 LYS 76 479 ? ? ? B . n # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ALS 'data collection' BOS ? 1 PHENIX 'model building' . ? 2 PHENIX refinement '(phenix.refine: 1.5_2)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # _cell.entry_id 3MOJ _cell.length_a 45.010 _cell.length_b 91.63 _cell.length_c 115.28 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3MOJ _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3MOJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.70 _exptl_crystal.density_percent_sol 66.73 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details ;20 mg/ml protein-RNA complex with RNA in 5% molar excess, 5 mM Tris-HCL, 200 mM potassium acetate, 26-30% PEG-3350, pH 8.0, VAPOR DIFFUSION, temperature 290K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 Tris-HCL ? ? ? 1 2 1 'potassium acetate' ? ? ? 1 3 1 PEG-3350 ? ? ? 1 4 2 Tris-HCL ? ? ? 1 5 2 'potassium acetate' ? ? ? 1 6 2 PEG-3350 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-08-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal, Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 3MOJ _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50. _reflns.d_resolution_high 2.9 _reflns.number_obs 10490 _reflns.number_all 11090 _reflns.percent_possible_obs 94.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.054 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.9 _reflns_shell.d_res_low 3.0 _reflns_shell.percent_possible_all 71.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.296 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3MOJ _refine.ls_number_reflns_obs 9995 _refine.ls_number_reflns_all 11043 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.05 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.896 _refine.ls_d_res_high 2.902 _refine.ls_percent_reflns_obs 90.51 _refine.ls_R_factor_obs 0.2158 _refine.ls_R_factor_all 0.216 _refine.ls_R_factor_R_work 0.2090 _refine.ls_R_factor_R_free 0.2749 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.40 _refine.ls_number_reflns_R_free 1039 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.230 _refine.solvent_model_param_bsol 50.000 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details '10% random' _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.31 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 570 _refine_hist.pdbx_number_atoms_nucleic_acid 1473 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2043 _refine_hist.d_res_high 2.902 _refine_hist.d_res_low 19.896 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.005 ? ? 2221 'X-RAY DIFFRACTION' ? f_angle_d 1.060 ? ? 3329 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 20.935 ? ? 904 'X-RAY DIFFRACTION' ? f_chiral_restr 0.048 ? ? 436 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 164 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.902 3.0549 899 0.2656 64.00 0.3219 . . 92 . . . . 'X-RAY DIFFRACTION' . 3.0549 3.2455 1185 0.2274 87.00 0.3158 . . 160 . . . . 'X-RAY DIFFRACTION' . 3.2455 3.4949 1309 0.2143 94.00 0.2646 . . 161 . . . . 'X-RAY DIFFRACTION' . 3.4949 3.8443 1324 0.2012 96.00 0.2666 . . 154 . . . . 'X-RAY DIFFRACTION' . 3.8443 4.3953 1368 0.2106 96.00 0.2850 . . 142 . . . . 'X-RAY DIFFRACTION' . 4.3953 5.5180 1400 0.1941 98.00 0.2670 . . 166 . . . . 'X-RAY DIFFRACTION' . 5.5180 19.8967 1471 0.2061 97.00 0.2642 . . 164 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3MOJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3MOJ _struct.title 'Structure of the RNA binding domain of the Bacillus subtilis YxiN protein complexed with a fragment of 23S ribosomal RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MOJ _struct_keywords.pdbx_keywords 'RNA binding protein/RNA' _struct_keywords.text 'RNA, RNA recognition motif, RNA binding protein, ribosomal RNA, RNA binding protein-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DBPA_BACSU P42305 2 MKLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLKVMKNTTVKGKQLKVNKANK 404 ? 2 PDB 3MOJ 3MOJ 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3MOJ B 1 ? 76 ? P42305 404 ? 479 ? 404 479 2 2 3MOJ A 1 ? 74 ? 3MOJ 2508 ? 2581 ? 2508 2581 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1770 ? 1 MORE -9 ? 1 'SSA (A^2)' 15940 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY B 8 ? LYS B 12 ? GLY B 411 LYS B 415 5 ? 5 HELX_P HELX_P2 2 ARG B 14 ? LYS B 24 ? ARG B 417 LYS B 427 1 ? 11 HELX_P HELX_P3 3 SER B 29 ? ASP B 31 ? SER B 432 ASP B 434 5 ? 3 HELX_P HELX_P4 4 LYS B 51 ? LYS B 60 ? LYS B 454 LYS B 463 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N2 ? ? ? 1_555 A U 73 O2 ? ? A G 2508 A U 2580 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A A 74 N7 ? ? A G 2508 A A 2581 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog3 hydrog ? ? A G 1 N3 ? ? ? 1_555 A A 74 N6 ? ? A G 2508 A A 2581 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 72 N3 ? ? A G 2509 A C 2579 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 72 O2 ? ? A G 2509 A C 2579 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 72 N4 ? ? A G 2509 A C 2579 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 71 N1 ? ? A C 2510 A G 2578 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 71 O6 ? ? A C 2510 A G 2578 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 71 N2 ? ? A C 2510 A G 2578 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 64 N3 ? ? A A 2513 A U 2571 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog11 hydrog ? ? A U 7 O2 ? ? ? 1_555 A G 63 N2 ? ? A U 2514 A G 2570 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog12 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 62 N1 ? ? A C 2515 A G 2569 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 62 O6 ? ? A C 2515 A G 2569 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 62 N2 ? ? A C 2515 A G 2569 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 63 O6 ? ? A C 2515 A G 2570 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog16 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 61 N3 ? ? A A 2516 A U 2568 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog17 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 60 N2 ? ? A C 2517 A G 2567 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog18 hydrog ? ? A A 11 N1 ? ? ? 1_555 A U 39 N3 ? ? A A 2518 A U 2546 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 39 O4 ? ? A A 2518 A U 2546 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 12 N3 ? ? ? 1_555 A G 38 O6 ? ? A U 2519 A G 2545 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog21 hydrog ? ? A U 12 O2 ? ? ? 1_555 A G 38 N1 ? ? A U 2519 A G 2545 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog22 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 37 N1 ? ? A C 2520 A G 2544 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 2520 A G 2544 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 37 N2 ? ? A C 2520 A G 2544 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 36 N1 ? ? A C 2521 A G 2543 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 36 O6 ? ? A C 2521 A G 2543 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 36 N2 ? ? A C 2521 A G 2543 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 15 N3 ? ? ? 1_555 A A 35 N1 ? ? A U 2522 A A 2542 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog29 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 2523 A C 2540 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 2523 A C 2540 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 2523 A C 2540 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 2524 A C 2539 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 2524 A C 2539 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 2524 A C 2539 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 2525 A C 2538 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 2525 A C 2538 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 2525 A C 2538 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 19 N1 ? ? ? 1_555 A U 30 O2 ? ? A G 2526 A U 2537 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog39 hydrog ? ? A G 19 O6 ? ? ? 1_555 A U 30 N3 ? ? A G 2526 A U 2537 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog40 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 2527 A G 2536 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 2527 A G 2536 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 2527 A G 2536 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A U 21 N3 ? ? ? 1_555 A G 28 O6 ? ? A U 2528 A G 2535 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog44 hydrog ? ? A U 21 O2 ? ? ? 1_555 A G 28 N1 ? ? A U 2528 A G 2535 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog45 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 2529 A C 2534 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 2529 A C 2534 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 2529 A C 2534 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 23 N2 ? ? ? 1_555 A A 26 N7 ? ? A G 2530 A A 2533 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog49 hydrog ? ? A G 37 N2 ? ? ? 1_555 A A 58 N3 ? ? A G 2544 A A 2565 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog50 hydrog ? ? A U 41 N3 ? ? ? 1_555 A A 53 N1 ? ? A U 2548 A A 2560 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog51 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 52 N3 ? ? A G 2549 A C 2559 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 52 O2 ? ? A G 2549 A C 2559 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 52 N4 ? ? A G 2549 A C 2559 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 43 N1 ? ? ? 1_555 A C 51 N3 ? ? A G 2550 A C 2558 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 43 N2 ? ? ? 1_555 A C 51 O2 ? ? A G 2550 A C 2558 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 43 O6 ? ? ? 1_555 A C 51 N4 ? ? A G 2550 A C 2558 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 50 O6 ? ? A C 2551 A G 2557 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE B 33 ? ILE B 38 ? ILE B 436 ILE B 441 A 2 SER B 43 ? ILE B 47 ? SER B 446 ILE B 450 A 3 LYS B 2 ? PHE B 5 ? LYS B 405 PHE B 408 A 4 VAL B 71 ? LYS B 73 ? VAL B 474 LYS B 476 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR B 37 ? N THR B 440 O TYR B 44 ? O TYR B 447 A 2 3 O VAL B 45 ? O VAL B 448 N LEU B 3 ? N LEU B 406 A 3 4 N TYR B 4 ? N TYR B 407 O ASN B 72 ? O ASN B 475 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A C 2551 ? ? "O3'" A C 2551 ? ? P A U 2552 ? ? 130.34 119.70 10.64 1.20 Y 2 1 "C1'" A A 2566 ? ? "O4'" A A 2566 ? ? "C4'" A A 2566 ? ? 105.47 109.70 -4.23 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN B 409 ? ? -72.24 39.98 2 1 LYS B 427 ? ? -73.25 47.42 3 1 ASP B 429 ? ? -51.48 98.80 4 1 LYS B 460 ? ? -81.83 40.52 5 1 VAL B 461 ? ? -154.45 -25.99 6 1 LYS B 463 ? ? -35.62 -36.97 7 1 LYS B 470 ? ? -166.68 97.06 8 1 ASN B 475 ? ? 171.47 167.89 9 1 LYS B 476 ? ? -37.56 125.47 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A A 2572 ? A A 65 2 1 Y 1 A C 2573 ? A C 66 3 1 Y 1 A G 2574 ? A G 67 4 1 Y 1 A C 2575 ? A C 68 5 1 Y 1 A G 2576 ? A G 69 6 1 Y 1 B LYS 479 ? B LYS 76 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 G OP3 O N N 146 G P P N N 147 G OP1 O N N 148 G OP2 O N N 149 G "O5'" O N N 150 G "C5'" C N N 151 G "C4'" C N R 152 G "O4'" O N N 153 G "C3'" C N S 154 G "O3'" O N N 155 G "C2'" C N R 156 G "O2'" O N N 157 G "C1'" C N R 158 G N9 N Y N 159 G C8 C Y N 160 G N7 N Y N 161 G C5 C Y N 162 G C6 C N N 163 G O6 O N N 164 G N1 N N N 165 G C2 C N N 166 G N2 N N N 167 G N3 N N N 168 G C4 C Y N 169 G HOP3 H N N 170 G HOP2 H N N 171 G "H5'" H N N 172 G "H5''" H N N 173 G "H4'" H N N 174 G "H3'" H N N 175 G "HO3'" H N N 176 G "H2'" H N N 177 G "HO2'" H N N 178 G "H1'" H N N 179 G H8 H N N 180 G H1 H N N 181 G H21 H N N 182 G H22 H N N 183 GLN N N N N 184 GLN CA C N S 185 GLN C C N N 186 GLN O O N N 187 GLN CB C N N 188 GLN CG C N N 189 GLN CD C N N 190 GLN OE1 O N N 191 GLN NE2 N N N 192 GLN OXT O N N 193 GLN H H N N 194 GLN H2 H N N 195 GLN HA H N N 196 GLN HB2 H N N 197 GLN HB3 H N N 198 GLN HG2 H N N 199 GLN HG3 H N N 200 GLN HE21 H N N 201 GLN HE22 H N N 202 GLN HXT H N N 203 GLU N N N N 204 GLU CA C N S 205 GLU C C N N 206 GLU O O N N 207 GLU CB C N N 208 GLU CG C N N 209 GLU CD C N N 210 GLU OE1 O N N 211 GLU OE2 O N N 212 GLU OXT O N N 213 GLU H H N N 214 GLU H2 H N N 215 GLU HA H N N 216 GLU HB2 H N N 217 GLU HB3 H N N 218 GLU HG2 H N N 219 GLU HG3 H N N 220 GLU HE2 H N N 221 GLU HXT H N N 222 GLY N N N N 223 GLY CA C N N 224 GLY C C N N 225 GLY O O N N 226 GLY OXT O N N 227 GLY H H N N 228 GLY H2 H N N 229 GLY HA2 H N N 230 GLY HA3 H N N 231 GLY HXT H N N 232 HIS N N N N 233 HIS CA C N S 234 HIS C C N N 235 HIS O O N N 236 HIS CB C N N 237 HIS CG C Y N 238 HIS ND1 N Y N 239 HIS CD2 C Y N 240 HIS CE1 C Y N 241 HIS NE2 N Y N 242 HIS OXT O N N 243 HIS H H N N 244 HIS H2 H N N 245 HIS HA H N N 246 HIS HB2 H N N 247 HIS HB3 H N N 248 HIS HD1 H N N 249 HIS HD2 H N N 250 HIS HE1 H N N 251 HIS HE2 H N N 252 HIS HXT H N N 253 ILE N N N N 254 ILE CA C N S 255 ILE C C N N 256 ILE O O N N 257 ILE CB C N S 258 ILE CG1 C N N 259 ILE CG2 C N N 260 ILE CD1 C N N 261 ILE OXT O N N 262 ILE H H N N 263 ILE H2 H N N 264 ILE HA H N N 265 ILE HB H N N 266 ILE HG12 H N N 267 ILE HG13 H N N 268 ILE HG21 H N N 269 ILE HG22 H N N 270 ILE HG23 H N N 271 ILE HD11 H N N 272 ILE HD12 H N N 273 ILE HD13 H N N 274 ILE HXT H N N 275 LEU N N N N 276 LEU CA C N S 277 LEU C C N N 278 LEU O O N N 279 LEU CB C N N 280 LEU CG C N N 281 LEU CD1 C N N 282 LEU CD2 C N N 283 LEU OXT O N N 284 LEU H H N N 285 LEU H2 H N N 286 LEU HA H N N 287 LEU HB2 H N N 288 LEU HB3 H N N 289 LEU HG H N N 290 LEU HD11 H N N 291 LEU HD12 H N N 292 LEU HD13 H N N 293 LEU HD21 H N N 294 LEU HD22 H N N 295 LEU HD23 H N N 296 LEU HXT H N N 297 LYS N N N N 298 LYS CA C N S 299 LYS C C N N 300 LYS O O N N 301 LYS CB C N N 302 LYS CG C N N 303 LYS CD C N N 304 LYS CE C N N 305 LYS NZ N N N 306 LYS OXT O N N 307 LYS H H N N 308 LYS H2 H N N 309 LYS HA H N N 310 LYS HB2 H N N 311 LYS HB3 H N N 312 LYS HG2 H N N 313 LYS HG3 H N N 314 LYS HD2 H N N 315 LYS HD3 H N N 316 LYS HE2 H N N 317 LYS HE3 H N N 318 LYS HZ1 H N N 319 LYS HZ2 H N N 320 LYS HZ3 H N N 321 LYS HXT H N N 322 MET N N N N 323 MET CA C N S 324 MET C C N N 325 MET O O N N 326 MET CB C N N 327 MET CG C N N 328 MET SD S N N 329 MET CE C N N 330 MET OXT O N N 331 MET H H N N 332 MET H2 H N N 333 MET HA H N N 334 MET HB2 H N N 335 MET HB3 H N N 336 MET HG2 H N N 337 MET HG3 H N N 338 MET HE1 H N N 339 MET HE2 H N N 340 MET HE3 H N N 341 MET HXT H N N 342 PHE N N N N 343 PHE CA C N S 344 PHE C C N N 345 PHE O O N N 346 PHE CB C N N 347 PHE CG C Y N 348 PHE CD1 C Y N 349 PHE CD2 C Y N 350 PHE CE1 C Y N 351 PHE CE2 C Y N 352 PHE CZ C Y N 353 PHE OXT O N N 354 PHE H H N N 355 PHE H2 H N N 356 PHE HA H N N 357 PHE HB2 H N N 358 PHE HB3 H N N 359 PHE HD1 H N N 360 PHE HD2 H N N 361 PHE HE1 H N N 362 PHE HE2 H N N 363 PHE HZ H N N 364 PHE HXT H N N 365 PRO N N N N 366 PRO CA C N S 367 PRO C C N N 368 PRO O O N N 369 PRO CB C N N 370 PRO CG C N N 371 PRO CD C N N 372 PRO OXT O N N 373 PRO H H N N 374 PRO HA H N N 375 PRO HB2 H N N 376 PRO HB3 H N N 377 PRO HG2 H N N 378 PRO HG3 H N N 379 PRO HD2 H N N 380 PRO HD3 H N N 381 PRO HXT H N N 382 SER N N N N 383 SER CA C N S 384 SER C C N N 385 SER O O N N 386 SER CB C N N 387 SER OG O N N 388 SER OXT O N N 389 SER H H N N 390 SER H2 H N N 391 SER HA H N N 392 SER HB2 H N N 393 SER HB3 H N N 394 SER HG H N N 395 SER HXT H N N 396 THR N N N N 397 THR CA C N S 398 THR C C N N 399 THR O O N N 400 THR CB C N R 401 THR OG1 O N N 402 THR CG2 C N N 403 THR OXT O N N 404 THR H H N N 405 THR H2 H N N 406 THR HA H N N 407 THR HB H N N 408 THR HG1 H N N 409 THR HG21 H N N 410 THR HG22 H N N 411 THR HG23 H N N 412 THR HXT H N N 413 TYR N N N N 414 TYR CA C N S 415 TYR C C N N 416 TYR O O N N 417 TYR CB C N N 418 TYR CG C Y N 419 TYR CD1 C Y N 420 TYR CD2 C Y N 421 TYR CE1 C Y N 422 TYR CE2 C Y N 423 TYR CZ C Y N 424 TYR OH O N N 425 TYR OXT O N N 426 TYR H H N N 427 TYR H2 H N N 428 TYR HA H N N 429 TYR HB2 H N N 430 TYR HB3 H N N 431 TYR HD1 H N N 432 TYR HD2 H N N 433 TYR HE1 H N N 434 TYR HE2 H N N 435 TYR HH H N N 436 TYR HXT H N N 437 U OP3 O N N 438 U P P N N 439 U OP1 O N N 440 U OP2 O N N 441 U "O5'" O N N 442 U "C5'" C N N 443 U "C4'" C N R 444 U "O4'" O N N 445 U "C3'" C N S 446 U "O3'" O N N 447 U "C2'" C N R 448 U "O2'" O N N 449 U "C1'" C N R 450 U N1 N N N 451 U C2 C N N 452 U O2 O N N 453 U N3 N N N 454 U C4 C N N 455 U O4 O N N 456 U C5 C N N 457 U C6 C N N 458 U HOP3 H N N 459 U HOP2 H N N 460 U "H5'" H N N 461 U "H5''" H N N 462 U "H4'" H N N 463 U "H3'" H N N 464 U "HO3'" H N N 465 U "H2'" H N N 466 U "HO2'" H N N 467 U "H1'" H N N 468 U H3 H N N 469 U H5 H N N 470 U H6 H N N 471 VAL N N N N 472 VAL CA C N S 473 VAL C C N N 474 VAL O O N N 475 VAL CB C N N 476 VAL CG1 C N N 477 VAL CG2 C N N 478 VAL OXT O N N 479 VAL H H N N 480 VAL H2 H N N 481 VAL HA H N N 482 VAL HB H N N 483 VAL HG11 H N N 484 VAL HG12 H N N 485 VAL HG13 H N N 486 VAL HG21 H N N 487 VAL HG22 H N N 488 VAL HG23 H N N 489 VAL HXT H N N 490 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 GLN N CA sing N N 185 GLN N H sing N N 186 GLN N H2 sing N N 187 GLN CA C sing N N 188 GLN CA CB sing N N 189 GLN CA HA sing N N 190 GLN C O doub N N 191 GLN C OXT sing N N 192 GLN CB CG sing N N 193 GLN CB HB2 sing N N 194 GLN CB HB3 sing N N 195 GLN CG CD sing N N 196 GLN CG HG2 sing N N 197 GLN CG HG3 sing N N 198 GLN CD OE1 doub N N 199 GLN CD NE2 sing N N 200 GLN NE2 HE21 sing N N 201 GLN NE2 HE22 sing N N 202 GLN OXT HXT sing N N 203 GLU N CA sing N N 204 GLU N H sing N N 205 GLU N H2 sing N N 206 GLU CA C sing N N 207 GLU CA CB sing N N 208 GLU CA HA sing N N 209 GLU C O doub N N 210 GLU C OXT sing N N 211 GLU CB CG sing N N 212 GLU CB HB2 sing N N 213 GLU CB HB3 sing N N 214 GLU CG CD sing N N 215 GLU CG HG2 sing N N 216 GLU CG HG3 sing N N 217 GLU CD OE1 doub N N 218 GLU CD OE2 sing N N 219 GLU OE2 HE2 sing N N 220 GLU OXT HXT sing N N 221 GLY N CA sing N N 222 GLY N H sing N N 223 GLY N H2 sing N N 224 GLY CA C sing N N 225 GLY CA HA2 sing N N 226 GLY CA HA3 sing N N 227 GLY C O doub N N 228 GLY C OXT sing N N 229 GLY OXT HXT sing N N 230 HIS N CA sing N N 231 HIS N H sing N N 232 HIS N H2 sing N N 233 HIS CA C sing N N 234 HIS CA CB sing N N 235 HIS CA HA sing N N 236 HIS C O doub N N 237 HIS C OXT sing N N 238 HIS CB CG sing N N 239 HIS CB HB2 sing N N 240 HIS CB HB3 sing N N 241 HIS CG ND1 sing Y N 242 HIS CG CD2 doub Y N 243 HIS ND1 CE1 doub Y N 244 HIS ND1 HD1 sing N N 245 HIS CD2 NE2 sing Y N 246 HIS CD2 HD2 sing N N 247 HIS CE1 NE2 sing Y N 248 HIS CE1 HE1 sing N N 249 HIS NE2 HE2 sing N N 250 HIS OXT HXT sing N N 251 ILE N CA sing N N 252 ILE N H sing N N 253 ILE N H2 sing N N 254 ILE CA C sing N N 255 ILE CA CB sing N N 256 ILE CA HA sing N N 257 ILE C O doub N N 258 ILE C OXT sing N N 259 ILE CB CG1 sing N N 260 ILE CB CG2 sing N N 261 ILE CB HB sing N N 262 ILE CG1 CD1 sing N N 263 ILE CG1 HG12 sing N N 264 ILE CG1 HG13 sing N N 265 ILE CG2 HG21 sing N N 266 ILE CG2 HG22 sing N N 267 ILE CG2 HG23 sing N N 268 ILE CD1 HD11 sing N N 269 ILE CD1 HD12 sing N N 270 ILE CD1 HD13 sing N N 271 ILE OXT HXT sing N N 272 LEU N CA sing N N 273 LEU N H sing N N 274 LEU N H2 sing N N 275 LEU CA C sing N N 276 LEU CA CB sing N N 277 LEU CA HA sing N N 278 LEU C O doub N N 279 LEU C OXT sing N N 280 LEU CB CG sing N N 281 LEU CB HB2 sing N N 282 LEU CB HB3 sing N N 283 LEU CG CD1 sing N N 284 LEU CG CD2 sing N N 285 LEU CG HG sing N N 286 LEU CD1 HD11 sing N N 287 LEU CD1 HD12 sing N N 288 LEU CD1 HD13 sing N N 289 LEU CD2 HD21 sing N N 290 LEU CD2 HD22 sing N N 291 LEU CD2 HD23 sing N N 292 LEU OXT HXT sing N N 293 LYS N CA sing N N 294 LYS N H sing N N 295 LYS N H2 sing N N 296 LYS CA C sing N N 297 LYS CA CB sing N N 298 LYS CA HA sing N N 299 LYS C O doub N N 300 LYS C OXT sing N N 301 LYS CB CG sing N N 302 LYS CB HB2 sing N N 303 LYS CB HB3 sing N N 304 LYS CG CD sing N N 305 LYS CG HG2 sing N N 306 LYS CG HG3 sing N N 307 LYS CD CE sing N N 308 LYS CD HD2 sing N N 309 LYS CD HD3 sing N N 310 LYS CE NZ sing N N 311 LYS CE HE2 sing N N 312 LYS CE HE3 sing N N 313 LYS NZ HZ1 sing N N 314 LYS NZ HZ2 sing N N 315 LYS NZ HZ3 sing N N 316 LYS OXT HXT sing N N 317 MET N CA sing N N 318 MET N H sing N N 319 MET N H2 sing N N 320 MET CA C sing N N 321 MET CA CB sing N N 322 MET CA HA sing N N 323 MET C O doub N N 324 MET C OXT sing N N 325 MET CB CG sing N N 326 MET CB HB2 sing N N 327 MET CB HB3 sing N N 328 MET CG SD sing N N 329 MET CG HG2 sing N N 330 MET CG HG3 sing N N 331 MET SD CE sing N N 332 MET CE HE1 sing N N 333 MET CE HE2 sing N N 334 MET CE HE3 sing N N 335 MET OXT HXT sing N N 336 PHE N CA sing N N 337 PHE N H sing N N 338 PHE N H2 sing N N 339 PHE CA C sing N N 340 PHE CA CB sing N N 341 PHE CA HA sing N N 342 PHE C O doub N N 343 PHE C OXT sing N N 344 PHE CB CG sing N N 345 PHE CB HB2 sing N N 346 PHE CB HB3 sing N N 347 PHE CG CD1 doub Y N 348 PHE CG CD2 sing Y N 349 PHE CD1 CE1 sing Y N 350 PHE CD1 HD1 sing N N 351 PHE CD2 CE2 doub Y N 352 PHE CD2 HD2 sing N N 353 PHE CE1 CZ doub Y N 354 PHE CE1 HE1 sing N N 355 PHE CE2 CZ sing Y N 356 PHE CE2 HE2 sing N N 357 PHE CZ HZ sing N N 358 PHE OXT HXT sing N N 359 PRO N CA sing N N 360 PRO N CD sing N N 361 PRO N H sing N N 362 PRO CA C sing N N 363 PRO CA CB sing N N 364 PRO CA HA sing N N 365 PRO C O doub N N 366 PRO C OXT sing N N 367 PRO CB CG sing N N 368 PRO CB HB2 sing N N 369 PRO CB HB3 sing N N 370 PRO CG CD sing N N 371 PRO CG HG2 sing N N 372 PRO CG HG3 sing N N 373 PRO CD HD2 sing N N 374 PRO CD HD3 sing N N 375 PRO OXT HXT sing N N 376 SER N CA sing N N 377 SER N H sing N N 378 SER N H2 sing N N 379 SER CA C sing N N 380 SER CA CB sing N N 381 SER CA HA sing N N 382 SER C O doub N N 383 SER C OXT sing N N 384 SER CB OG sing N N 385 SER CB HB2 sing N N 386 SER CB HB3 sing N N 387 SER OG HG sing N N 388 SER OXT HXT sing N N 389 THR N CA sing N N 390 THR N H sing N N 391 THR N H2 sing N N 392 THR CA C sing N N 393 THR CA CB sing N N 394 THR CA HA sing N N 395 THR C O doub N N 396 THR C OXT sing N N 397 THR CB OG1 sing N N 398 THR CB CG2 sing N N 399 THR CB HB sing N N 400 THR OG1 HG1 sing N N 401 THR CG2 HG21 sing N N 402 THR CG2 HG22 sing N N 403 THR CG2 HG23 sing N N 404 THR OXT HXT sing N N 405 TYR N CA sing N N 406 TYR N H sing N N 407 TYR N H2 sing N N 408 TYR CA C sing N N 409 TYR CA CB sing N N 410 TYR CA HA sing N N 411 TYR C O doub N N 412 TYR C OXT sing N N 413 TYR CB CG sing N N 414 TYR CB HB2 sing N N 415 TYR CB HB3 sing N N 416 TYR CG CD1 doub Y N 417 TYR CG CD2 sing Y N 418 TYR CD1 CE1 sing Y N 419 TYR CD1 HD1 sing N N 420 TYR CD2 CE2 doub Y N 421 TYR CD2 HD2 sing N N 422 TYR CE1 CZ doub Y N 423 TYR CE1 HE1 sing N N 424 TYR CE2 CZ sing Y N 425 TYR CE2 HE2 sing N N 426 TYR CZ OH sing N N 427 TYR OH HH sing N N 428 TYR OXT HXT sing N N 429 U OP3 P sing N N 430 U OP3 HOP3 sing N N 431 U P OP1 doub N N 432 U P OP2 sing N N 433 U P "O5'" sing N N 434 U OP2 HOP2 sing N N 435 U "O5'" "C5'" sing N N 436 U "C5'" "C4'" sing N N 437 U "C5'" "H5'" sing N N 438 U "C5'" "H5''" sing N N 439 U "C4'" "O4'" sing N N 440 U "C4'" "C3'" sing N N 441 U "C4'" "H4'" sing N N 442 U "O4'" "C1'" sing N N 443 U "C3'" "O3'" sing N N 444 U "C3'" "C2'" sing N N 445 U "C3'" "H3'" sing N N 446 U "O3'" "HO3'" sing N N 447 U "C2'" "O2'" sing N N 448 U "C2'" "C1'" sing N N 449 U "C2'" "H2'" sing N N 450 U "O2'" "HO2'" sing N N 451 U "C1'" N1 sing N N 452 U "C1'" "H1'" sing N N 453 U N1 C2 sing N N 454 U N1 C6 sing N N 455 U C2 O2 doub N N 456 U C2 N3 sing N N 457 U N3 C4 sing N N 458 U N3 H3 sing N N 459 U C4 O4 doub N N 460 U C4 C5 sing N N 461 U C5 C6 doub N N 462 U C5 H5 sing N N 463 U C6 H6 sing N N 464 VAL N CA sing N N 465 VAL N H sing N N 466 VAL N H2 sing N N 467 VAL CA C sing N N 468 VAL CA CB sing N N 469 VAL CA HA sing N N 470 VAL C O doub N N 471 VAL C OXT sing N N 472 VAL CB CG1 sing N N 473 VAL CB CG2 sing N N 474 VAL CB HB sing N N 475 VAL CG1 HG11 sing N N 476 VAL CG1 HG12 sing N N 477 VAL CG1 HG13 sing N N 478 VAL CG2 HG21 sing N N 479 VAL CG2 HG22 sing N N 480 VAL CG2 HG23 sing N N 481 VAL OXT HXT sing N N 482 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3MOJ 'double helix' 3MOJ 'a-form double helix' 3MOJ 'b-form double helix' 3MOJ 'hairpin loop' 3MOJ tetraloop 3MOJ 'bulge loop' 3MOJ 'mismatched base pair' 3MOJ 'internal loop' 3MOJ 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A U 73 1_555 0.366 0.426 0.322 -2.104 -27.132 10.735 1 A_G2508:U2580_A A 2508 ? A 2580 ? ? ? 1 A G 2 1_555 A C 72 1_555 0.913 -0.386 -1.219 -15.913 -28.404 6.277 2 A_G2509:C2579_A A 2509 ? A 2579 ? 19 1 1 A C 3 1_555 A G 71 1_555 -1.393 -0.700 -2.121 5.421 -1.620 2.198 3 A_C2510:G2578_A A 2510 ? A 2578 ? 19 1 1 A A 6 1_555 A U 64 1_555 -1.392 -0.041 -1.394 -25.630 -23.331 29.073 4 A_A2513:U2571_A A 2513 ? A 2571 ? ? 1 1 A U 7 1_555 A G 63 1_555 -1.749 -0.001 -0.584 1.447 17.403 -3.352 5 A_U2514:G2570_A A 2514 ? A 2570 ? ? 1 1 A C 8 1_555 A G 62 1_555 -0.979 0.142 -0.769 17.663 -10.863 7.190 6 A_C2515:G2569_A A 2515 ? A 2569 ? 19 1 1 A A 9 1_555 A U 61 1_555 0.456 0.527 -1.036 -32.490 -18.368 16.683 7 A_A2516:U2568_A A 2516 ? A 2568 ? ? ? 1 A C 10 1_555 A G 60 1_555 -1.568 0.244 -0.759 4.691 -9.545 9.050 8 A_C2517:G2567_A A 2517 ? A 2567 ? ? 1 1 A A 11 1_555 A U 39 1_555 0.543 0.017 -0.544 -14.364 -14.087 -7.317 9 A_A2518:U2546_A A 2518 ? A 2546 ? 20 1 1 A U 12 1_555 A G 38 1_555 1.520 -0.633 -0.140 8.001 -16.562 -0.244 10 A_U2519:G2545_A A 2519 ? A 2545 ? 28 1 1 A C 13 1_555 A G 37 1_555 0.173 -0.272 -0.263 11.674 -18.289 4.516 11 A_C2520:G2544_A A 2520 ? A 2544 ? 19 1 1 A C 14 1_555 A G 36 1_555 -0.183 0.060 -0.298 9.175 -8.510 -1.605 12 A_C2521:G2543_A A 2521 ? A 2543 ? 19 1 1 A U 15 1_555 A A 35 1_555 0.589 0.146 0.093 25.283 6.258 10.703 13 A_U2522:A2542_A A 2522 ? A 2542 ? ? 1 1 A G 16 1_555 A C 33 1_555 -0.153 -0.153 0.298 -0.786 -10.005 -2.087 14 A_G2523:C2540_A A 2523 ? A 2540 ? 19 1 1 A G 17 1_555 A C 32 1_555 0.032 0.118 0.538 4.475 -3.553 2.373 15 A_G2524:C2539_A A 2524 ? A 2539 ? 19 1 1 A G 18 1_555 A C 31 1_555 0.298 0.033 0.184 -10.782 -8.519 4.584 16 A_G2525:C2538_A A 2525 ? A 2538 ? 19 1 1 A G 19 1_555 A U 30 1_555 -1.140 -0.391 -0.777 -6.789 -15.945 -9.166 17 A_G2526:U2537_A A 2526 ? A 2537 ? 28 1 1 A C 20 1_555 A G 29 1_555 0.714 -0.017 -0.604 12.780 -17.908 5.038 18 A_C2527:G2536_A A 2527 ? A 2536 ? 19 1 1 A U 21 1_555 A G 28 1_555 1.970 -0.550 -0.756 10.608 -11.488 1.662 19 A_U2528:G2535_A A 2528 ? A 2535 ? 28 1 1 A G 22 1_555 A C 27 1_555 -0.117 -0.400 0.157 7.761 8.696 -2.957 20 A_G2529:C2534_A A 2529 ? A 2534 ? 19 1 1 A G 23 1_555 A A 26 1_555 6.873 -4.834 0.535 24.959 5.240 -12.881 21 A_G2530:A2533_A A 2530 ? A 2533 ? ? ? 1 A U 41 1_555 A A 53 1_555 -0.332 0.227 0.273 -7.430 -14.751 9.391 22 A_U2548:A2560_A A 2548 ? A 2560 ? ? ? 1 A G 42 1_555 A C 52 1_555 -0.485 0.071 0.281 -0.424 -9.636 5.784 23 A_G2549:C2559_A A 2549 ? A 2559 ? 19 1 1 A G 43 1_555 A C 51 1_555 0.569 -0.199 0.343 -1.535 -5.805 -2.643 24 A_G2550:C2558_A A 2550 ? A 2558 ? 19 1 1 A C 44 1_555 A G 50 1_555 0.019 0.343 0.054 -1.477 3.013 -8.822 25 A_C2551:G2557_A A 2551 ? A 2557 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A U 73 1_555 A G 2 1_555 A C 72 1_555 -2.195 -0.915 3.880 -3.613 12.301 35.239 -3.328 2.862 3.574 19.538 5.739 37.429 1 AA_G2508G2509:C2579U2580_AA A 2508 ? A 2580 ? A 2509 ? A 2579 ? 1 A G 2 1_555 A C 72 1_555 A C 3 1_555 A G 71 1_555 0.418 0.454 3.171 1.183 0.361 33.389 0.731 -0.537 3.188 0.628 -2.059 33.411 2 AA_G2509C2510:G2578C2579_AA A 2509 ? A 2579 ? A 2510 ? A 2578 ? 1 A A 6 1_555 A U 64 1_555 A U 7 1_555 A G 63 1_555 -1.061 1.017 3.399 -28.639 30.535 26.435 -1.846 -1.603 3.093 43.128 40.452 49.192 3 AA_A2513U2514:G2570U2571_AA A 2513 ? A 2571 ? A 2514 ? A 2570 ? 1 A U 7 1_555 A G 63 1_555 A C 8 1_555 A G 62 1_555 1.637 -1.464 3.036 4.274 10.256 29.129 -4.473 -2.322 2.592 19.519 -8.135 31.133 4 AA_U2514C2515:G2569G2570_AA A 2514 ? A 2570 ? A 2515 ? A 2569 ? 1 A C 8 1_555 A G 62 1_555 A A 9 1_555 A U 61 1_555 0.147 -0.587 4.316 -2.108 30.268 35.582 -4.026 -0.415 2.968 41.486 2.889 46.441 5 AA_C2515A2516:U2568G2569_AA A 2515 ? A 2569 ? A 2516 ? A 2568 ? 1 A A 9 1_555 A U 61 1_555 A C 10 1_555 A G 60 1_555 -0.870 -0.311 2.308 -4.909 2.881 23.338 -1.425 0.939 2.383 6.990 11.908 24.013 6 AA_A2516C2517:G2567U2568_AA A 2516 ? A 2568 ? A 2517 ? A 2567 ? 1 A C 10 1_555 A G 60 1_555 A A 11 1_555 A U 39 1_555 1.028 -1.409 3.901 -0.463 9.532 38.967 -3.302 -1.560 3.464 14.035 0.682 40.074 7 AA_C2517A2518:U2546G2567_AA A 2517 ? A 2567 ? A 2518 ? A 2546 ? 1 A A 11 1_555 A U 39 1_555 A U 12 1_555 A G 38 1_555 0.325 -1.363 2.787 -0.789 4.674 31.773 -3.153 -0.705 2.557 8.478 1.431 32.115 8 AA_A2518U2519:G2545U2546_AA A 2518 ? A 2546 ? A 2519 ? A 2545 ? 1 A U 12 1_555 A G 38 1_555 A C 13 1_555 A G 37 1_555 0.794 -1.547 3.261 2.866 3.934 30.031 -3.720 -0.953 3.098 7.531 -5.486 30.414 9 AA_U2519C2520:G2544G2545_AA A 2519 ? A 2545 ? A 2520 ? A 2544 ? 1 A C 13 1_555 A G 37 1_555 A C 14 1_555 A G 36 1_555 -0.824 -1.950 3.574 -0.422 2.472 27.863 -4.661 1.597 3.404 5.120 0.875 27.973 10 AA_C2520C2521:G2543G2544_AA A 2520 ? A 2544 ? A 2521 ? A 2543 ? 1 A C 14 1_555 A G 36 1_555 A U 15 1_555 A A 35 1_555 0.122 -1.821 3.091 -7.245 3.003 24.735 -4.813 -2.091 2.710 6.796 16.394 25.930 11 AA_C2521U2522:A2542G2543_AA A 2521 ? A 2543 ? A 2522 ? A 2542 ? 1 A G 16 1_555 A C 33 1_555 A G 17 1_555 A C 32 1_555 -0.146 -1.692 2.899 -2.249 8.078 32.402 -4.044 -0.053 2.423 14.182 3.948 33.441 12 AA_G2523G2524:C2539C2540_AA A 2523 ? A 2540 ? A 2524 ? A 2539 ? 1 A G 17 1_555 A C 32 1_555 A G 18 1_555 A C 31 1_555 0.159 -1.810 3.517 2.781 13.234 33.619 -4.742 0.128 2.646 21.816 -4.585 36.164 13 AA_G2524G2525:C2538C2539_AA A 2524 ? A 2539 ? A 2525 ? A 2538 ? 1 A G 18 1_555 A C 31 1_555 A G 19 1_555 A U 30 1_555 -1.052 -0.955 3.045 2.207 11.050 30.715 -3.368 2.204 2.483 20.034 -4.001 32.670 14 AA_G2525G2526:U2537C2538_AA A 2525 ? A 2538 ? A 2526 ? A 2537 ? 1 A G 19 1_555 A U 30 1_555 A C 20 1_555 A G 29 1_555 0.716 -1.235 2.888 0.291 2.195 36.053 -2.263 -1.119 2.816 3.542 -0.470 36.119 15 AA_G2526C2527:G2536U2537_AA A 2526 ? A 2537 ? A 2527 ? A 2536 ? 1 A C 20 1_555 A G 29 1_555 A U 21 1_555 A G 28 1_555 0.437 -1.322 3.551 1.762 0.356 35.526 -2.220 -0.436 3.555 0.583 -2.886 35.570 16 AA_C2527U2528:G2535G2536_AA A 2527 ? A 2536 ? A 2528 ? A 2535 ? 1 A U 21 1_555 A G 28 1_555 A G 22 1_555 A C 27 1_555 -1.023 -2.980 3.608 -3.080 4.319 17.355 -11.949 1.463 2.921 13.899 9.910 18.142 17 AA_U2528G2529:C2534G2535_AA A 2528 ? A 2535 ? A 2529 ? A 2534 ? 1 A G 22 1_555 A C 27 1_555 A G 23 1_555 A A 26 1_555 -1.355 -1.117 2.906 -1.247 9.840 51.566 -1.822 1.462 2.695 11.193 1.419 52.447 18 AA_G2529G2530:A2533C2534_AA A 2529 ? A 2534 ? A 2530 ? A 2533 ? 1 A U 41 1_555 A A 53 1_555 A G 42 1_555 A C 52 1_555 0.130 -1.408 2.967 -1.058 4.794 28.684 -3.719 -0.461 2.694 9.587 2.116 29.093 19 AA_U2548G2549:C2559A2560_AA A 2548 ? A 2560 ? A 2549 ? A 2559 ? 1 A G 42 1_555 A C 52 1_555 A G 43 1_555 A C 51 1_555 -0.723 -1.848 3.264 -2.786 0.676 33.822 -3.274 0.792 3.275 1.159 4.777 33.939 20 AA_G2549G2550:C2558C2559_AA A 2549 ? A 2559 ? A 2550 ? A 2558 ? 1 A G 43 1_555 A C 51 1_555 A C 44 1_555 A G 50 1_555 0.062 -2.008 3.345 4.328 3.751 28.383 -4.835 0.819 3.035 7.554 -8.715 28.943 21 AA_G2550C2551:G2557C2558_AA A 2550 ? A 2558 ? A 2551 ? A 2557 ? # _atom_sites.entry_id 3MOJ _atom_sites.fract_transf_matrix[1][1] 0.022217 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010914 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008675 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_