data_3MVN # _entry.id 3MVN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3MVN RCSB RCSB059050 WWPDB D_1000059050 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id apc36461.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3MVN _pdbx_database_status.recvd_initial_deposition_date 2010-05-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Filippova, E.V.' 1 'Minasov, G.' 2 'Shuvalova, L.' 3 'Kiryukhina, O.' 4 'Clancy, S.' 5 'Joachimiak, A.' 6 'Anderson, F.W.' 7 'Midwest Center for Structural Genomics (MCSG)' 8 # _citation.id primary _citation.title ;Crystal structure of a domain from a putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-medo-diaminopimelate ligase from Haemophilus ducreyi 35000HP ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Filippova, E.V.' 1 primary 'Minasov, G.' 2 primary 'Shuvalova, L.' 3 primary 'Kiryukhina, O.' 4 primary 'Clancy, S.' 5 primary 'Joachimiak, A.' 6 primary 'Anderson, F.W.' 7 # _cell.entry_id 3MVN _cell.length_a 46.996 _cell.length_b 46.996 _cell.length_c 106.628 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MVN _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-medo-diaminopimelate ligase' 18310.916 1 ? ? ? ? 2 water nat water 18.015 67 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)HHHHHHSSGVDLGTENLYFQSNAQRRLEVKGVVNNITVYDDFAHHPTAITATIDALRAKVGQQRILAVLEPRSNT (MSE)K(MSE)GVHKHELATSLQDADSVFIYQPPTIEWQVSEVLANLAQPAISADDVDELV(MSE)RIVQQAKPNDHILI (MSE)SNGAFGGIHQKLLTALAN ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHSSGVDLGTENLYFQSNAQRRLEVKGVVNNITVYDDFAHHPTAITATIDALRAKVGQQRILAVLEPRSNTMKMG VHKHELATSLQDADSVFIYQPPTIEWQVSEVLANLAQPAISADDVDELVMRIVQQAKPNDHILIMSNGAFGGIHQKLLTA LAN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier apc36461.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 SER n 1 10 GLY n 1 11 VAL n 1 12 ASP n 1 13 LEU n 1 14 GLY n 1 15 THR n 1 16 GLU n 1 17 ASN n 1 18 LEU n 1 19 TYR n 1 20 PHE n 1 21 GLN n 1 22 SER n 1 23 ASN n 1 24 ALA n 1 25 GLN n 1 26 ARG n 1 27 ARG n 1 28 LEU n 1 29 GLU n 1 30 VAL n 1 31 LYS n 1 32 GLY n 1 33 VAL n 1 34 VAL n 1 35 ASN n 1 36 ASN n 1 37 ILE n 1 38 THR n 1 39 VAL n 1 40 TYR n 1 41 ASP n 1 42 ASP n 1 43 PHE n 1 44 ALA n 1 45 HIS n 1 46 HIS n 1 47 PRO n 1 48 THR n 1 49 ALA n 1 50 ILE n 1 51 THR n 1 52 ALA n 1 53 THR n 1 54 ILE n 1 55 ASP n 1 56 ALA n 1 57 LEU n 1 58 ARG n 1 59 ALA n 1 60 LYS n 1 61 VAL n 1 62 GLY n 1 63 GLN n 1 64 GLN n 1 65 ARG n 1 66 ILE n 1 67 LEU n 1 68 ALA n 1 69 VAL n 1 70 LEU n 1 71 GLU n 1 72 PRO n 1 73 ARG n 1 74 SER n 1 75 ASN n 1 76 THR n 1 77 MSE n 1 78 LYS n 1 79 MSE n 1 80 GLY n 1 81 VAL n 1 82 HIS n 1 83 LYS n 1 84 HIS n 1 85 GLU n 1 86 LEU n 1 87 ALA n 1 88 THR n 1 89 SER n 1 90 LEU n 1 91 GLN n 1 92 ASP n 1 93 ALA n 1 94 ASP n 1 95 SER n 1 96 VAL n 1 97 PHE n 1 98 ILE n 1 99 TYR n 1 100 GLN n 1 101 PRO n 1 102 PRO n 1 103 THR n 1 104 ILE n 1 105 GLU n 1 106 TRP n 1 107 GLN n 1 108 VAL n 1 109 SER n 1 110 GLU n 1 111 VAL n 1 112 LEU n 1 113 ALA n 1 114 ASN n 1 115 LEU n 1 116 ALA n 1 117 GLN n 1 118 PRO n 1 119 ALA n 1 120 ILE n 1 121 SER n 1 122 ALA n 1 123 ASP n 1 124 ASP n 1 125 VAL n 1 126 ASP n 1 127 GLU n 1 128 LEU n 1 129 VAL n 1 130 MSE n 1 131 ARG n 1 132 ILE n 1 133 VAL n 1 134 GLN n 1 135 GLN n 1 136 ALA n 1 137 LYS n 1 138 PRO n 1 139 ASN n 1 140 ASP n 1 141 HIS n 1 142 ILE n 1 143 LEU n 1 144 ILE n 1 145 MSE n 1 146 SER n 1 147 ASN n 1 148 GLY n 1 149 ALA n 1 150 PHE n 1 151 GLY n 1 152 GLY n 1 153 ILE n 1 154 HIS n 1 155 GLN n 1 156 LYS n 1 157 LEU n 1 158 LEU n 1 159 THR n 1 160 ALA n 1 161 LEU n 1 162 ALA n 1 163 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'HD_0703, mpl' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 35000HP _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Haemophilus ducreyi' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 233412 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21magic _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7VN73_HAEDU _struct_ref.pdbx_db_accession Q7VN73 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QRRLEVKGVVNNITVYDDFAHHPTAITATIDALRAKVGQQRILAVLEPRSNTMKMGVHKHELATSLQDADSVFIYQPPTI EWQVSEVLANLAQPAISADDVDELVMRIVQQAKPNDHILIMSNGAFGGIHQKLLTALAN ; _struct_ref.pdbx_align_begin 315 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3MVN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 25 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 163 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7VN73 _struct_ref_seq.db_align_beg 315 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 453 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 315 _struct_ref_seq.pdbx_auth_seq_align_end 453 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3MVN MSE A 1 ? UNP Q7VN73 ? ? 'expression tag' 291 1 1 3MVN HIS A 2 ? UNP Q7VN73 ? ? 'expression tag' 292 2 1 3MVN HIS A 3 ? UNP Q7VN73 ? ? 'expression tag' 293 3 1 3MVN HIS A 4 ? UNP Q7VN73 ? ? 'expression tag' 294 4 1 3MVN HIS A 5 ? UNP Q7VN73 ? ? 'expression tag' 295 5 1 3MVN HIS A 6 ? UNP Q7VN73 ? ? 'expression tag' 296 6 1 3MVN HIS A 7 ? UNP Q7VN73 ? ? 'expression tag' 297 7 1 3MVN SER A 8 ? UNP Q7VN73 ? ? 'expression tag' 298 8 1 3MVN SER A 9 ? UNP Q7VN73 ? ? 'expression tag' 299 9 1 3MVN GLY A 10 ? UNP Q7VN73 ? ? 'expression tag' 300 10 1 3MVN VAL A 11 ? UNP Q7VN73 ? ? 'expression tag' 301 11 1 3MVN ASP A 12 ? UNP Q7VN73 ? ? 'expression tag' 302 12 1 3MVN LEU A 13 ? UNP Q7VN73 ? ? 'expression tag' 303 13 1 3MVN GLY A 14 ? UNP Q7VN73 ? ? 'expression tag' 304 14 1 3MVN THR A 15 ? UNP Q7VN73 ? ? 'expression tag' 305 15 1 3MVN GLU A 16 ? UNP Q7VN73 ? ? 'expression tag' 306 16 1 3MVN ASN A 17 ? UNP Q7VN73 ? ? 'expression tag' 307 17 1 3MVN LEU A 18 ? UNP Q7VN73 ? ? 'expression tag' 308 18 1 3MVN TYR A 19 ? UNP Q7VN73 ? ? 'expression tag' 309 19 1 3MVN PHE A 20 ? UNP Q7VN73 ? ? 'expression tag' 310 20 1 3MVN GLN A 21 ? UNP Q7VN73 ? ? 'expression tag' 311 21 1 3MVN SER A 22 ? UNP Q7VN73 ? ? 'expression tag' 312 22 1 3MVN ASN A 23 ? UNP Q7VN73 ? ? 'expression tag' 313 23 1 3MVN ALA A 24 ? UNP Q7VN73 ? ? 'expression tag' 314 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3MVN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.61 _exptl_crystal.density_percent_sol 23.69 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2 M Ammonium Sulfate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2010-04-26 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI-111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97872 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-G' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-G _diffrn_source.pdbx_wavelength 0.97872 _diffrn_source.pdbx_wavelength_list 0.97872 # _reflns.entry_id 3MVN _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.620 _reflns.d_resolution_high 1.900 _reflns.number_obs 10007 _reflns.number_all 10007 _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.08000 _reflns.pdbx_Rsym_value 0.08000 _reflns.pdbx_netI_over_sigmaI 40.4890 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 13.700 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.93 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.44600 _reflns_shell.pdbx_Rsym_value 0.44600 _reflns_shell.meanI_over_sigI_obs 7.100 _reflns_shell.pdbx_redundancy 14.40 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3MVN _refine.ls_number_reflns_obs 9464 _refine.ls_number_reflns_all 9943 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.62 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 99.21 _refine.ls_R_factor_obs 0.16220 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.15880 _refine.ls_R_factor_R_free 0.23707 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 479 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.911 _refine.B_iso_mean 23.008 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.662 _refine.pdbx_overall_ESU_R_Free 0.151 _refine.overall_SU_ML 0.088 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.451 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 3MVN _refine_analyze.Luzzati_coordinate_error_obs 0.2 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 950 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 1017 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 20.62 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 974 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 626 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.412 1.948 ? 1325 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.956 3.000 ? 1543 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.707 5.000 ? 122 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 44.096 25.333 ? 45 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.194 15.000 ? 165 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.132 15.000 ? 5 'X-RAY DIFFRACTION' ? r_chiral_restr 0.088 0.200 ? 160 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.021 ? 1077 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 175 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.450 1.500 ? 618 'X-RAY DIFFRACTION' ? r_mcbond_other 0.442 1.500 ? 247 'X-RAY DIFFRACTION' ? r_mcangle_it 2.313 2.000 ? 998 'X-RAY DIFFRACTION' ? r_scbond_it 3.812 3.000 ? 356 'X-RAY DIFFRACTION' ? r_scangle_it 5.915 4.500 ? 327 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.766 3.000 ? 1600 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.899 _refine_ls_shell.d_res_low 1.947 _refine_ls_shell.number_reflns_R_work 684 _refine_ls_shell.R_factor_R_work 0.156 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.217 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 42 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 3MVN _struct.title ;Crystal structure of a domain from a putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-medo-diaminopimelate ligase from Haemophilus ducreyi 35000HP ; _struct.pdbx_descriptor 'UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-medo-diaminopimelate ligase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MVN _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text 'Structural Genomics, MCSG, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, LIGASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 46 ? GLY A 62 ? HIS A 336 GLY A 352 1 ? 17 HELX_P HELX_P2 2 LYS A 83 ? GLN A 91 ? LYS A 373 GLN A 381 1 ? 9 HELX_P HELX_P3 3 GLN A 107 ? ALA A 113 ? GLN A 397 ALA A 403 1 ? 7 HELX_P HELX_P4 4 ASP A 124 ? ALA A 136 ? ASP A 414 ALA A 426 1 ? 13 HELX_P HELX_P5 5 ALA A 149 ? GLY A 151 ? ALA A 439 GLY A 441 5 ? 3 HELX_P HELX_P6 6 GLY A 152 ? LEU A 161 ? GLY A 442 LEU A 451 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A VAL 129 C ? ? ? 1_555 A MSE 130 N ? ? A VAL 419 A MSE 420 1_555 ? ? ? ? ? ? ? 1.317 ? covale2 covale ? ? A MSE 130 C ? ? ? 1_555 A ARG 131 N ? ? A MSE 420 A ARG 421 1_555 ? ? ? ? ? ? ? 1.346 ? covale3 covale ? ? A ILE 144 C ? ? ? 1_555 A MSE 145 N ? ? A ILE 434 A MSE 435 1_555 ? ? ? ? ? ? ? 1.309 ? covale4 covale ? ? A MSE 145 C ? ? ? 1_555 A SER 146 N ? ? A MSE 435 A SER 436 1_555 ? ? ? ? ? ? ? 1.342 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 29 ? VAL A 34 ? GLU A 319 VAL A 324 A 2 ILE A 37 ? ASP A 42 ? ILE A 327 ASP A 332 A 3 HIS A 141 ? MSE A 145 ? HIS A 431 MSE A 435 A 4 ILE A 66 ? LEU A 70 ? ILE A 356 LEU A 360 A 5 SER A 95 ? TYR A 99 ? SER A 385 TYR A 389 A 6 ALA A 119 ? ALA A 122 ? ALA A 409 ALA A 412 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 31 ? N LYS A 321 O VAL A 39 ? O VAL A 329 A 2 3 N THR A 38 ? N THR A 328 O ILE A 142 ? O ILE A 432 A 3 4 O LEU A 143 ? O LEU A 433 N VAL A 69 ? N VAL A 359 A 4 5 N LEU A 70 ? N LEU A 360 O PHE A 97 ? O PHE A 387 A 5 6 N ILE A 98 ? N ILE A 388 O ILE A 120 ? O ILE A 410 # _database_PDB_matrix.entry_id 3MVN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3MVN _atom_sites.fract_transf_matrix[1][1] 0.021278 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021278 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009378 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 291 ? ? ? A . n A 1 2 HIS 2 292 ? ? ? A . n A 1 3 HIS 3 293 ? ? ? A . n A 1 4 HIS 4 294 ? ? ? A . n A 1 5 HIS 5 295 ? ? ? A . n A 1 6 HIS 6 296 ? ? ? A . n A 1 7 HIS 7 297 ? ? ? A . n A 1 8 SER 8 298 ? ? ? A . n A 1 9 SER 9 299 ? ? ? A . n A 1 10 GLY 10 300 ? ? ? A . n A 1 11 VAL 11 301 ? ? ? A . n A 1 12 ASP 12 302 ? ? ? A . n A 1 13 LEU 13 303 ? ? ? A . n A 1 14 GLY 14 304 ? ? ? A . n A 1 15 THR 15 305 ? ? ? A . n A 1 16 GLU 16 306 ? ? ? A . n A 1 17 ASN 17 307 ? ? ? A . n A 1 18 LEU 18 308 ? ? ? A . n A 1 19 TYR 19 309 ? ? ? A . n A 1 20 PHE 20 310 ? ? ? A . n A 1 21 GLN 21 311 ? ? ? A . n A 1 22 SER 22 312 ? ? ? A . n A 1 23 ASN 23 313 ? ? ? A . n A 1 24 ALA 24 314 ? ? ? A . n A 1 25 GLN 25 315 ? ? ? A . n A 1 26 ARG 26 316 ? ? ? A . n A 1 27 ARG 27 317 317 ARG ARG A . n A 1 28 LEU 28 318 318 LEU LEU A . n A 1 29 GLU 29 319 319 GLU GLU A . n A 1 30 VAL 30 320 320 VAL VAL A . n A 1 31 LYS 31 321 321 LYS LYS A . n A 1 32 GLY 32 322 322 GLY GLY A . n A 1 33 VAL 33 323 323 VAL VAL A . n A 1 34 VAL 34 324 324 VAL VAL A . n A 1 35 ASN 35 325 325 ASN ASN A . n A 1 36 ASN 36 326 326 ASN ASN A . n A 1 37 ILE 37 327 327 ILE ILE A . n A 1 38 THR 38 328 328 THR THR A . n A 1 39 VAL 39 329 329 VAL VAL A . n A 1 40 TYR 40 330 330 TYR TYR A . n A 1 41 ASP 41 331 331 ASP ASP A . n A 1 42 ASP 42 332 332 ASP ASP A . n A 1 43 PHE 43 333 333 PHE PHE A . n A 1 44 ALA 44 334 334 ALA ALA A . n A 1 45 HIS 45 335 335 HIS HIS A . n A 1 46 HIS 46 336 336 HIS HIS A . n A 1 47 PRO 47 337 337 PRO PRO A . n A 1 48 THR 48 338 338 THR THR A . n A 1 49 ALA 49 339 339 ALA ALA A . n A 1 50 ILE 50 340 340 ILE ILE A . n A 1 51 THR 51 341 341 THR THR A . n A 1 52 ALA 52 342 342 ALA ALA A . n A 1 53 THR 53 343 343 THR THR A . n A 1 54 ILE 54 344 344 ILE ILE A . n A 1 55 ASP 55 345 345 ASP ASP A . n A 1 56 ALA 56 346 346 ALA ALA A . n A 1 57 LEU 57 347 347 LEU LEU A . n A 1 58 ARG 58 348 348 ARG ARG A . n A 1 59 ALA 59 349 349 ALA ALA A . n A 1 60 LYS 60 350 350 LYS LYS A . n A 1 61 VAL 61 351 351 VAL VAL A . n A 1 62 GLY 62 352 352 GLY GLY A . n A 1 63 GLN 63 353 353 GLN GLN A . n A 1 64 GLN 64 354 354 GLN GLN A . n A 1 65 ARG 65 355 355 ARG ARG A . n A 1 66 ILE 66 356 356 ILE ILE A . n A 1 67 LEU 67 357 357 LEU LEU A . n A 1 68 ALA 68 358 358 ALA ALA A . n A 1 69 VAL 69 359 359 VAL VAL A . n A 1 70 LEU 70 360 360 LEU LEU A . n A 1 71 GLU 71 361 361 GLU GLU A . n A 1 72 PRO 72 362 362 PRO PRO A . n A 1 73 ARG 73 363 363 ARG ARG A . n A 1 74 SER 74 364 ? ? ? A . n A 1 75 ASN 75 365 ? ? ? A . n A 1 76 THR 76 366 ? ? ? A . n A 1 77 MSE 77 367 ? ? ? A . n A 1 78 LYS 78 368 ? ? ? A . n A 1 79 MSE 79 369 ? ? ? A . n A 1 80 GLY 80 370 ? ? ? A . n A 1 81 VAL 81 371 ? ? ? A . n A 1 82 HIS 82 372 ? ? ? A . n A 1 83 LYS 83 373 373 LYS LYS A . n A 1 84 HIS 84 374 374 HIS HIS A . n A 1 85 GLU 85 375 375 GLU GLU A . n A 1 86 LEU 86 376 376 LEU LEU A . n A 1 87 ALA 87 377 377 ALA ALA A . n A 1 88 THR 88 378 378 THR THR A . n A 1 89 SER 89 379 379 SER SER A . n A 1 90 LEU 90 380 380 LEU LEU A . n A 1 91 GLN 91 381 381 GLN GLN A . n A 1 92 ASP 92 382 382 ASP ASP A . n A 1 93 ALA 93 383 383 ALA ALA A . n A 1 94 ASP 94 384 384 ASP ASP A . n A 1 95 SER 95 385 385 SER SER A . n A 1 96 VAL 96 386 386 VAL VAL A . n A 1 97 PHE 97 387 387 PHE PHE A . n A 1 98 ILE 98 388 388 ILE ILE A . n A 1 99 TYR 99 389 389 TYR TYR A . n A 1 100 GLN 100 390 390 GLN GLN A . n A 1 101 PRO 101 391 391 PRO PRO A . n A 1 102 PRO 102 392 ? ? ? A . n A 1 103 THR 103 393 ? ? ? A . n A 1 104 ILE 104 394 ? ? ? A . n A 1 105 GLU 105 395 ? ? ? A . n A 1 106 TRP 106 396 396 TRP TRP A . n A 1 107 GLN 107 397 397 GLN GLN A . n A 1 108 VAL 108 398 398 VAL VAL A . n A 1 109 SER 109 399 399 SER SER A . n A 1 110 GLU 110 400 400 GLU GLU A . n A 1 111 VAL 111 401 401 VAL VAL A . n A 1 112 LEU 112 402 402 LEU LEU A . n A 1 113 ALA 113 403 403 ALA ALA A . n A 1 114 ASN 114 404 404 ASN ASN A . n A 1 115 LEU 115 405 405 LEU LEU A . n A 1 116 ALA 116 406 406 ALA ALA A . n A 1 117 GLN 117 407 407 GLN GLN A . n A 1 118 PRO 118 408 408 PRO PRO A . n A 1 119 ALA 119 409 409 ALA ALA A . n A 1 120 ILE 120 410 410 ILE ILE A . n A 1 121 SER 121 411 411 SER SER A . n A 1 122 ALA 122 412 412 ALA ALA A . n A 1 123 ASP 123 413 413 ASP ASP A . n A 1 124 ASP 124 414 414 ASP ASP A . n A 1 125 VAL 125 415 415 VAL VAL A . n A 1 126 ASP 126 416 416 ASP ASP A . n A 1 127 GLU 127 417 417 GLU GLU A . n A 1 128 LEU 128 418 418 LEU LEU A . n A 1 129 VAL 129 419 419 VAL VAL A . n A 1 130 MSE 130 420 420 MSE MSE A . n A 1 131 ARG 131 421 421 ARG ARG A . n A 1 132 ILE 132 422 422 ILE ILE A . n A 1 133 VAL 133 423 423 VAL VAL A . n A 1 134 GLN 134 424 424 GLN GLN A . n A 1 135 GLN 135 425 425 GLN GLN A . n A 1 136 ALA 136 426 426 ALA ALA A . n A 1 137 LYS 137 427 427 LYS LYS A . n A 1 138 PRO 138 428 428 PRO PRO A . n A 1 139 ASN 139 429 429 ASN ASN A . n A 1 140 ASP 140 430 430 ASP ASP A . n A 1 141 HIS 141 431 431 HIS HIS A . n A 1 142 ILE 142 432 432 ILE ILE A . n A 1 143 LEU 143 433 433 LEU LEU A . n A 1 144 ILE 144 434 434 ILE ILE A . n A 1 145 MSE 145 435 435 MSE MSE A . n A 1 146 SER 146 436 436 SER SER A . n A 1 147 ASN 147 437 437 ASN ASN A . n A 1 148 GLY 148 438 438 GLY GLY A . n A 1 149 ALA 149 439 439 ALA ALA A . n A 1 150 PHE 150 440 440 PHE PHE A . n A 1 151 GLY 151 441 441 GLY GLY A . n A 1 152 GLY 152 442 442 GLY GLY A . n A 1 153 ILE 153 443 443 ILE ILE A . n A 1 154 HIS 154 444 444 HIS HIS A . n A 1 155 GLN 155 445 445 GLN GLN A . n A 1 156 LYS 156 446 446 LYS LYS A . n A 1 157 LEU 157 447 447 LEU LEU A . n A 1 158 LEU 158 448 448 LEU LEU A . n A 1 159 THR 159 449 449 THR THR A . n A 1 160 ALA 160 450 450 ALA ALA A . n A 1 161 LEU 161 451 451 LEU LEU A . n A 1 162 ALA 162 452 452 ALA ALA A . n A 1 163 ASN 163 453 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1 1 HOH HOH A . B 2 HOH 2 2 2 HOH HOH A . B 2 HOH 3 3 3 HOH HOH A . B 2 HOH 4 4 4 HOH HOH A . B 2 HOH 5 5 5 HOH HOH A . B 2 HOH 6 6 6 HOH HOH A . B 2 HOH 7 7 7 HOH HOH A . B 2 HOH 8 8 8 HOH HOH A . B 2 HOH 9 9 9 HOH HOH A . B 2 HOH 10 10 10 HOH HOH A . B 2 HOH 11 11 11 HOH HOH A . B 2 HOH 12 12 12 HOH HOH A . B 2 HOH 13 13 13 HOH HOH A . B 2 HOH 14 14 14 HOH HOH A . B 2 HOH 15 15 15 HOH HOH A . B 2 HOH 16 16 16 HOH HOH A . B 2 HOH 17 17 17 HOH HOH A . B 2 HOH 18 18 18 HOH HOH A . B 2 HOH 19 19 19 HOH HOH A . B 2 HOH 20 20 20 HOH HOH A . B 2 HOH 21 21 21 HOH HOH A . B 2 HOH 22 22 22 HOH HOH A . B 2 HOH 23 23 23 HOH HOH A . B 2 HOH 24 24 24 HOH HOH A . B 2 HOH 25 25 25 HOH HOH A . B 2 HOH 26 26 26 HOH HOH A . B 2 HOH 27 27 27 HOH HOH A . B 2 HOH 28 28 28 HOH HOH A . B 2 HOH 29 29 29 HOH HOH A . B 2 HOH 30 30 30 HOH HOH A . B 2 HOH 31 31 31 HOH HOH A . B 2 HOH 32 32 32 HOH HOH A . B 2 HOH 33 33 33 HOH HOH A . B 2 HOH 34 34 34 HOH HOH A . B 2 HOH 35 35 35 HOH HOH A . B 2 HOH 36 36 36 HOH HOH A . B 2 HOH 37 37 37 HOH HOH A . B 2 HOH 38 38 38 HOH HOH A . B 2 HOH 39 39 39 HOH HOH A . B 2 HOH 40 40 40 HOH HOH A . B 2 HOH 41 41 41 HOH HOH A . B 2 HOH 42 42 42 HOH HOH A . B 2 HOH 43 43 43 HOH HOH A . B 2 HOH 44 44 44 HOH HOH A . B 2 HOH 45 45 45 HOH HOH A . B 2 HOH 46 46 46 HOH HOH A . B 2 HOH 47 47 47 HOH HOH A . B 2 HOH 48 48 48 HOH HOH A . B 2 HOH 49 49 49 HOH HOH A . B 2 HOH 50 50 50 HOH HOH A . B 2 HOH 51 51 51 HOH HOH A . B 2 HOH 52 52 52 HOH HOH A . B 2 HOH 53 53 53 HOH HOH A . B 2 HOH 54 54 54 HOH HOH A . B 2 HOH 55 55 55 HOH HOH A . B 2 HOH 56 56 56 HOH HOH A . B 2 HOH 57 57 57 HOH HOH A . B 2 HOH 58 58 58 HOH HOH A . B 2 HOH 59 59 59 HOH HOH A . B 2 HOH 60 60 60 HOH HOH A . B 2 HOH 61 61 61 HOH HOH A . B 2 HOH 62 62 62 HOH HOH A . B 2 HOH 63 63 63 HOH HOH A . B 2 HOH 64 64 64 HOH HOH A . B 2 HOH 65 65 65 HOH HOH A . B 2 HOH 66 66 66 HOH HOH A . B 2 HOH 67 67 67 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 130 A MSE 420 ? MET SELENOMETHIONINE 2 A MSE 145 A MSE 435 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 22.4794 _pdbx_refine_tls.origin_y 4.2322 _pdbx_refine_tls.origin_z 37.2982 _pdbx_refine_tls.T[1][1] 0.0165 _pdbx_refine_tls.T[2][2] 0.0547 _pdbx_refine_tls.T[3][3] 0.0600 _pdbx_refine_tls.T[1][2] -0.0010 _pdbx_refine_tls.T[1][3] 0.0050 _pdbx_refine_tls.T[2][3] -0.0073 _pdbx_refine_tls.L[1][1] 1.4673 _pdbx_refine_tls.L[2][2] 1.2952 _pdbx_refine_tls.L[3][3] 1.5154 _pdbx_refine_tls.L[1][2] -0.0941 _pdbx_refine_tls.L[1][3] -0.2741 _pdbx_refine_tls.L[2][3] -0.1121 _pdbx_refine_tls.S[1][1] 0.0064 _pdbx_refine_tls.S[1][2] 0.0385 _pdbx_refine_tls.S[1][3] -0.0724 _pdbx_refine_tls.S[2][1] -0.0736 _pdbx_refine_tls.S[2][2] 0.0017 _pdbx_refine_tls.S[2][3] 0.0040 _pdbx_refine_tls.S[3][1] 0.1340 _pdbx_refine_tls.S[3][2] -0.0422 _pdbx_refine_tls.S[3][3] -0.0081 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 317 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 452 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' Max ? 1 HKL-3000 phasing . ? 2 MLPHARE phasing . ? 3 DM 'model building' . ? 4 SHELXD phasing . ? 5 ARP/wARP 'model building' . ? 6 Coot 'model building' . ? 7 REFMAC refinement 5.5.0109 ? 8 HKL-2000 'data reduction' . ? 9 HKL-2000 'data scaling' . ? 10 DM phasing . ? 11 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 335 ? ? -152.52 9.08 2 1 ASN A 429 ? ? 86.63 -3.63 3 1 SER A 436 ? ? -171.75 145.31 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 291 ? A MSE 1 2 1 Y 1 A HIS 292 ? A HIS 2 3 1 Y 1 A HIS 293 ? A HIS 3 4 1 Y 1 A HIS 294 ? A HIS 4 5 1 Y 1 A HIS 295 ? A HIS 5 6 1 Y 1 A HIS 296 ? A HIS 6 7 1 Y 1 A HIS 297 ? A HIS 7 8 1 Y 1 A SER 298 ? A SER 8 9 1 Y 1 A SER 299 ? A SER 9 10 1 Y 1 A GLY 300 ? A GLY 10 11 1 Y 1 A VAL 301 ? A VAL 11 12 1 Y 1 A ASP 302 ? A ASP 12 13 1 Y 1 A LEU 303 ? A LEU 13 14 1 Y 1 A GLY 304 ? A GLY 14 15 1 Y 1 A THR 305 ? A THR 15 16 1 Y 1 A GLU 306 ? A GLU 16 17 1 Y 1 A ASN 307 ? A ASN 17 18 1 Y 1 A LEU 308 ? A LEU 18 19 1 Y 1 A TYR 309 ? A TYR 19 20 1 Y 1 A PHE 310 ? A PHE 20 21 1 Y 1 A GLN 311 ? A GLN 21 22 1 Y 1 A SER 312 ? A SER 22 23 1 Y 1 A ASN 313 ? A ASN 23 24 1 Y 1 A ALA 314 ? A ALA 24 25 1 Y 1 A GLN 315 ? A GLN 25 26 1 Y 1 A ARG 316 ? A ARG 26 27 1 Y 1 A SER 364 ? A SER 74 28 1 Y 1 A ASN 365 ? A ASN 75 29 1 Y 1 A THR 366 ? A THR 76 30 1 Y 1 A MSE 367 ? A MSE 77 31 1 Y 1 A LYS 368 ? A LYS 78 32 1 Y 1 A MSE 369 ? A MSE 79 33 1 Y 1 A GLY 370 ? A GLY 80 34 1 Y 1 A VAL 371 ? A VAL 81 35 1 Y 1 A HIS 372 ? A HIS 82 36 1 Y 1 A PRO 392 ? A PRO 102 37 1 Y 1 A THR 393 ? A THR 103 38 1 Y 1 A ILE 394 ? A ILE 104 39 1 Y 1 A GLU 395 ? A GLU 105 40 1 Y 1 A ASN 453 ? A ASN 163 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #