data_3MZY # _entry.id 3MZY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3MZY RCSB RCSB059205 WWPDB D_1000059205 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC66349.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3MZY _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-05-13 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stein, A.J.' 1 'Chhor, G.' 2 'Clancy, S.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The Crystal Structure of the RNA polymerase sigma-H factor from Fusobacterium nucleatum to 2.5A' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Stein, A.J.' 1 primary 'Chhor, G.' 2 primary 'Clancy, S.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 3MZY _cell.length_a 71.761 _cell.length_b 71.761 _cell.length_c 153.623 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.Int_Tables_number 179 _symmetry.entry_id 3MZY _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA polymerase sigma-H factor' 19359.547 1 ? ? ? ? 2 water nat water 18.015 12 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GAEKEDLVQEGILGLLKAIKFYDETKSSFSSFAFLCIRRE(MSE)ISAIRKANTQKH(MSE)VLNEALKTNAILEDSAYF DDEGHNINNYKSSESNPEEAYLLKEEIEEFKKFSENNFSKFEKEVLTYLIRGYSYREIATILSKNLKSIDNTIQRIRKKS EEWIKEEENIKR ; _entity_poly.pdbx_seq_one_letter_code_can ;GAEKEDLVQEGILGLLKAIKFYDETKSSFSSFAFLCIRREMISAIRKANTQKHMVLNEALKTNAILEDSAYFDDEGHNIN NYKSSESNPEEAYLLKEEIEEFKKFSENNFSKFEKEVLTYLIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKEEE NIKR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC66349.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 GLU n 1 4 LYS n 1 5 GLU n 1 6 ASP n 1 7 LEU n 1 8 VAL n 1 9 GLN n 1 10 GLU n 1 11 GLY n 1 12 ILE n 1 13 LEU n 1 14 GLY n 1 15 LEU n 1 16 LEU n 1 17 LYS n 1 18 ALA n 1 19 ILE n 1 20 LYS n 1 21 PHE n 1 22 TYR n 1 23 ASP n 1 24 GLU n 1 25 THR n 1 26 LYS n 1 27 SER n 1 28 SER n 1 29 PHE n 1 30 SER n 1 31 SER n 1 32 PHE n 1 33 ALA n 1 34 PHE n 1 35 LEU n 1 36 CYS n 1 37 ILE n 1 38 ARG n 1 39 ARG n 1 40 GLU n 1 41 MSE n 1 42 ILE n 1 43 SER n 1 44 ALA n 1 45 ILE n 1 46 ARG n 1 47 LYS n 1 48 ALA n 1 49 ASN n 1 50 THR n 1 51 GLN n 1 52 LYS n 1 53 HIS n 1 54 MSE n 1 55 VAL n 1 56 LEU n 1 57 ASN n 1 58 GLU n 1 59 ALA n 1 60 LEU n 1 61 LYS n 1 62 THR n 1 63 ASN n 1 64 ALA n 1 65 ILE n 1 66 LEU n 1 67 GLU n 1 68 ASP n 1 69 SER n 1 70 ALA n 1 71 TYR n 1 72 PHE n 1 73 ASP n 1 74 ASP n 1 75 GLU n 1 76 GLY n 1 77 HIS n 1 78 ASN n 1 79 ILE n 1 80 ASN n 1 81 ASN n 1 82 TYR n 1 83 LYS n 1 84 SER n 1 85 SER n 1 86 GLU n 1 87 SER n 1 88 ASN n 1 89 PRO n 1 90 GLU n 1 91 GLU n 1 92 ALA n 1 93 TYR n 1 94 LEU n 1 95 LEU n 1 96 LYS n 1 97 GLU n 1 98 GLU n 1 99 ILE n 1 100 GLU n 1 101 GLU n 1 102 PHE n 1 103 LYS n 1 104 LYS n 1 105 PHE n 1 106 SER n 1 107 GLU n 1 108 ASN n 1 109 ASN n 1 110 PHE n 1 111 SER n 1 112 LYS n 1 113 PHE n 1 114 GLU n 1 115 LYS n 1 116 GLU n 1 117 VAL n 1 118 LEU n 1 119 THR n 1 120 TYR n 1 121 LEU n 1 122 ILE n 1 123 ARG n 1 124 GLY n 1 125 TYR n 1 126 SER n 1 127 TYR n 1 128 ARG n 1 129 GLU n 1 130 ILE n 1 131 ALA n 1 132 THR n 1 133 ILE n 1 134 LEU n 1 135 SER n 1 136 LYS n 1 137 ASN n 1 138 LEU n 1 139 LYS n 1 140 SER n 1 141 ILE n 1 142 ASP n 1 143 ASN n 1 144 THR n 1 145 ILE n 1 146 GLN n 1 147 ARG n 1 148 ILE n 1 149 ARG n 1 150 LYS n 1 151 LYS n 1 152 SER n 1 153 GLU n 1 154 GLU n 1 155 TRP n 1 156 ILE n 1 157 LYS n 1 158 GLU n 1 159 GLU n 1 160 GLU n 1 161 ASN n 1 162 ILE n 1 163 LYS n 1 164 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene FN1518 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 25586' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Fusobacterium nucleatum subsp. nucleatum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 190304 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8RIQ2_FUSNN _struct_ref.pdbx_db_accession Q8RIQ2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GAEKEDLVQEGILGLLKAIKFYDETKSSFSSFAFLCIRREMISAIRKANTQKHMVLNEALKTNAILEDSAYFDDEGHNIN NYKSSESNPEEAYLLKEEIEEFKKFSENNFSKFEKEVLTYLIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKEEE NIKR ; _struct_ref.pdbx_align_begin 41 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3MZY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 164 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8RIQ2 _struct_ref_seq.db_align_beg 41 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 204 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 41 _struct_ref_seq.pdbx_auth_seq_align_end 204 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3MZY _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 58.29 _exptl_crystal.density_Matthews 2.95 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '20% PEG 1000, 0.1M Tris pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-12-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Double crystal' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength_list 0.9794 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3MZY _reflns.d_resolution_high 2.500 _reflns.d_resolution_low 50.000 _reflns.number_obs 8730 _reflns.pdbx_Rmerge_I_obs 0.083 _reflns.pdbx_netI_over_sigmaI 9.000 _reflns.pdbx_chi_squared 1.631 _reflns.pdbx_redundancy 14.400 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.50 2.59 ? ? ? 0.599 ? ? 0.828 14.70 ? 836 100.00 ? 1 2.59 2.69 ? ? ? 0.442 ? ? 0.856 14.80 ? 849 100.00 ? 2 2.69 2.82 ? ? ? 0.332 ? ? 0.915 14.50 ? 843 100.00 ? 3 2.82 2.96 ? ? ? 0.226 ? ? 0.994 14.40 ? 849 100.00 ? 4 2.96 3.15 ? ? ? 0.177 ? ? 1.104 14.40 ? 850 100.00 ? 5 3.15 3.39 ? ? ? 0.121 ? ? 1.302 14.40 ? 864 100.00 ? 6 3.39 3.73 ? ? ? 0.090 ? ? 1.788 14.30 ? 857 100.00 ? 7 3.73 4.27 ? ? ? 0.074 ? ? 2.302 14.40 ? 884 100.00 ? 8 4.27 5.38 ? ? ? 0.066 ? ? 2.596 14.80 ? 899 100.00 ? 9 5.38 50.00 ? ? ? 0.057 ? ? 3.370 13.60 ? 999 99.40 ? 10 # _refine.entry_id 3MZY _refine.ls_d_res_high 2.500 _refine.ls_d_res_low 31.070 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.790 _refine.ls_number_reflns_obs 8675 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED ; _refine.ls_R_factor_obs 0.236 _refine.ls_R_factor_R_work 0.234 _refine.ls_R_factor_R_free 0.269 _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 412 _refine.B_iso_mean 62.632 _refine.aniso_B[1][1] -0.040 _refine.aniso_B[2][2] -0.040 _refine.aniso_B[3][3] 0.050 _refine.aniso_B[1][2] -0.020 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.922 _refine.correlation_coeff_Fo_to_Fc_free 0.904 _refine.pdbx_overall_ESU_R_Free 0.236 _refine.overall_SU_ML 0.175 _refine.overall_SU_B 17.069 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 971 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 983 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 31.070 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 984 0.011 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1323 1.138 1.962 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 121 4.628 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 46 41.403 24.348 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 179 19.983 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 21.128 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 152 0.086 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 724 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 610 0.374 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 969 0.722 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 374 1.314 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 354 2.100 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.498 _refine_ls_shell.d_res_low 2.562 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.250 _refine_ls_shell.number_reflns_R_work 580 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.248 _refine_ls_shell.R_factor_R_free 0.254 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 36 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 616 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3MZY _struct.title 'The Crystal Structure of the RNA polymerase sigma-H factor from Fusobacterium nucleatum to 2.5A' _struct.pdbx_descriptor 'RNA polymerase sigma-H factor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MZY _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text 'PSI, MCSG, Structural Genomics, Midwest Center for Structural Genomics, Protein Structure Initiative, RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 7 ? TYR A 22 ? LEU A 47 TYR A 62 1 ? 16 HELX_P HELX_P2 2 SER A 28 ? GLN A 51 ? SER A 68 GLN A 91 1 ? 24 HELX_P HELX_P3 3 GLU A 90 ? PHE A 110 ? GLU A 130 PHE A 150 1 ? 21 HELX_P HELX_P4 4 SER A 111 ? ILE A 122 ? SER A 151 ILE A 162 1 ? 12 HELX_P HELX_P5 5 SER A 126 ? SER A 135 ? SER A 166 SER A 175 1 ? 10 HELX_P HELX_P6 6 ASN A 137 ? GLU A 160 ? ASN A 177 GLU A 200 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLU 40 C ? ? ? 1_555 A MSE 41 N ? ? A GLU 80 A MSE 81 1_555 ? ? ? ? ? ? ? 1.320 ? covale2 covale ? ? A MSE 41 C ? ? ? 1_555 A ILE 42 N ? ? A MSE 81 A ILE 82 1_555 ? ? ? ? ? ? ? 1.326 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 3MZY _atom_sites.fract_transf_matrix[1][1] 0.013935 _atom_sites.fract_transf_matrix[1][2] 0.008045 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016091 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006509 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 41 ? ? ? A . n A 1 2 ALA 2 42 ? ? ? A . n A 1 3 GLU 3 43 ? ? ? A . n A 1 4 LYS 4 44 ? ? ? A . n A 1 5 GLU 5 45 45 GLU GLU A . n A 1 6 ASP 6 46 46 ASP ASP A . n A 1 7 LEU 7 47 47 LEU LEU A . n A 1 8 VAL 8 48 48 VAL VAL A . n A 1 9 GLN 9 49 49 GLN GLN A . n A 1 10 GLU 10 50 50 GLU GLU A . n A 1 11 GLY 11 51 51 GLY GLY A . n A 1 12 ILE 12 52 52 ILE ILE A . n A 1 13 LEU 13 53 53 LEU LEU A . n A 1 14 GLY 14 54 54 GLY GLY A . n A 1 15 LEU 15 55 55 LEU LEU A . n A 1 16 LEU 16 56 56 LEU LEU A . n A 1 17 LYS 17 57 57 LYS LYS A . n A 1 18 ALA 18 58 58 ALA ALA A . n A 1 19 ILE 19 59 59 ILE ILE A . n A 1 20 LYS 20 60 60 LYS LYS A . n A 1 21 PHE 21 61 61 PHE PHE A . n A 1 22 TYR 22 62 62 TYR TYR A . n A 1 23 ASP 23 63 63 ASP ASP A . n A 1 24 GLU 24 64 64 GLU GLU A . n A 1 25 THR 25 65 65 THR THR A . n A 1 26 LYS 26 66 66 LYS LYS A . n A 1 27 SER 27 67 67 SER SER A . n A 1 28 SER 28 68 68 SER SER A . n A 1 29 PHE 29 69 69 PHE PHE A . n A 1 30 SER 30 70 70 SER SER A . n A 1 31 SER 31 71 71 SER SER A . n A 1 32 PHE 32 72 72 PHE PHE A . n A 1 33 ALA 33 73 73 ALA ALA A . n A 1 34 PHE 34 74 74 PHE PHE A . n A 1 35 LEU 35 75 75 LEU LEU A . n A 1 36 CYS 36 76 76 CYS CYS A . n A 1 37 ILE 37 77 77 ILE ILE A . n A 1 38 ARG 38 78 78 ARG ARG A . n A 1 39 ARG 39 79 79 ARG ARG A . n A 1 40 GLU 40 80 80 GLU GLU A . n A 1 41 MSE 41 81 81 MSE MSE A . n A 1 42 ILE 42 82 82 ILE ILE A . n A 1 43 SER 43 83 83 SER SER A . n A 1 44 ALA 44 84 84 ALA ALA A . n A 1 45 ILE 45 85 85 ILE ILE A . n A 1 46 ARG 46 86 86 ARG ARG A . n A 1 47 LYS 47 87 87 LYS LYS A . n A 1 48 ALA 48 88 88 ALA ALA A . n A 1 49 ASN 49 89 89 ASN ASN A . n A 1 50 THR 50 90 90 THR THR A . n A 1 51 GLN 51 91 91 GLN GLN A . n A 1 52 LYS 52 92 92 LYS LYS A . n A 1 53 HIS 53 93 ? ? ? A . n A 1 54 MSE 54 94 ? ? ? A . n A 1 55 VAL 55 95 ? ? ? A . n A 1 56 LEU 56 96 ? ? ? A . n A 1 57 ASN 57 97 ? ? ? A . n A 1 58 GLU 58 98 ? ? ? A . n A 1 59 ALA 59 99 ? ? ? A . n A 1 60 LEU 60 100 ? ? ? A . n A 1 61 LYS 61 101 ? ? ? A . n A 1 62 THR 62 102 ? ? ? A . n A 1 63 ASN 63 103 ? ? ? A . n A 1 64 ALA 64 104 ? ? ? A . n A 1 65 ILE 65 105 ? ? ? A . n A 1 66 LEU 66 106 ? ? ? A . n A 1 67 GLU 67 107 ? ? ? A . n A 1 68 ASP 68 108 ? ? ? A . n A 1 69 SER 69 109 ? ? ? A . n A 1 70 ALA 70 110 ? ? ? A . n A 1 71 TYR 71 111 ? ? ? A . n A 1 72 PHE 72 112 ? ? ? A . n A 1 73 ASP 73 113 ? ? ? A . n A 1 74 ASP 74 114 ? ? ? A . n A 1 75 GLU 75 115 ? ? ? A . n A 1 76 GLY 76 116 ? ? ? A . n A 1 77 HIS 77 117 ? ? ? A . n A 1 78 ASN 78 118 ? ? ? A . n A 1 79 ILE 79 119 ? ? ? A . n A 1 80 ASN 80 120 ? ? ? A . n A 1 81 ASN 81 121 ? ? ? A . n A 1 82 TYR 82 122 ? ? ? A . n A 1 83 LYS 83 123 ? ? ? A . n A 1 84 SER 84 124 ? ? ? A . n A 1 85 SER 85 125 ? ? ? A . n A 1 86 GLU 86 126 ? ? ? A . n A 1 87 SER 87 127 ? ? ? A . n A 1 88 ASN 88 128 ? ? ? A . n A 1 89 PRO 89 129 ? ? ? A . n A 1 90 GLU 90 130 130 GLU GLU A . n A 1 91 GLU 91 131 131 GLU GLU A . n A 1 92 ALA 92 132 132 ALA ALA A . n A 1 93 TYR 93 133 133 TYR TYR A . n A 1 94 LEU 94 134 134 LEU LEU A . n A 1 95 LEU 95 135 135 LEU LEU A . n A 1 96 LYS 96 136 136 LYS LYS A . n A 1 97 GLU 97 137 137 GLU GLU A . n A 1 98 GLU 98 138 138 GLU GLU A . n A 1 99 ILE 99 139 139 ILE ILE A . n A 1 100 GLU 100 140 140 GLU GLU A . n A 1 101 GLU 101 141 141 GLU GLU A . n A 1 102 PHE 102 142 142 PHE PHE A . n A 1 103 LYS 103 143 143 LYS LYS A . n A 1 104 LYS 104 144 144 LYS LYS A . n A 1 105 PHE 105 145 145 PHE PHE A . n A 1 106 SER 106 146 146 SER SER A . n A 1 107 GLU 107 147 147 GLU GLU A . n A 1 108 ASN 108 148 148 ASN ASN A . n A 1 109 ASN 109 149 149 ASN ASN A . n A 1 110 PHE 110 150 150 PHE PHE A . n A 1 111 SER 111 151 151 SER SER A . n A 1 112 LYS 112 152 152 LYS LYS A . n A 1 113 PHE 113 153 153 PHE PHE A . n A 1 114 GLU 114 154 154 GLU GLU A . n A 1 115 LYS 115 155 155 LYS LYS A . n A 1 116 GLU 116 156 156 GLU GLU A . n A 1 117 VAL 117 157 157 VAL VAL A . n A 1 118 LEU 118 158 158 LEU LEU A . n A 1 119 THR 119 159 159 THR THR A . n A 1 120 TYR 120 160 160 TYR TYR A . n A 1 121 LEU 121 161 161 LEU LEU A . n A 1 122 ILE 122 162 162 ILE ILE A . n A 1 123 ARG 123 163 163 ARG ARG A . n A 1 124 GLY 124 164 164 GLY GLY A . n A 1 125 TYR 125 165 165 TYR TYR A . n A 1 126 SER 126 166 166 SER SER A . n A 1 127 TYR 127 167 167 TYR TYR A . n A 1 128 ARG 128 168 168 ARG ARG A . n A 1 129 GLU 129 169 169 GLU GLU A . n A 1 130 ILE 130 170 170 ILE ILE A . n A 1 131 ALA 131 171 171 ALA ALA A . n A 1 132 THR 132 172 172 THR THR A . n A 1 133 ILE 133 173 173 ILE ILE A . n A 1 134 LEU 134 174 174 LEU LEU A . n A 1 135 SER 135 175 175 SER SER A . n A 1 136 LYS 136 176 176 LYS LYS A . n A 1 137 ASN 137 177 177 ASN ASN A . n A 1 138 LEU 138 178 178 LEU LEU A . n A 1 139 LYS 139 179 179 LYS LYS A . n A 1 140 SER 140 180 180 SER SER A . n A 1 141 ILE 141 181 181 ILE ILE A . n A 1 142 ASP 142 182 182 ASP ASP A . n A 1 143 ASN 143 183 183 ASN ASN A . n A 1 144 THR 144 184 184 THR THR A . n A 1 145 ILE 145 185 185 ILE ILE A . n A 1 146 GLN 146 186 186 GLN GLN A . n A 1 147 ARG 147 187 187 ARG ARG A . n A 1 148 ILE 148 188 188 ILE ILE A . n A 1 149 ARG 149 189 189 ARG ARG A . n A 1 150 LYS 150 190 190 LYS LYS A . n A 1 151 LYS 151 191 191 LYS LYS A . n A 1 152 SER 152 192 192 SER SER A . n A 1 153 GLU 153 193 193 GLU GLU A . n A 1 154 GLU 154 194 194 GLU GLU A . n A 1 155 TRP 155 195 195 TRP TRP A . n A 1 156 ILE 156 196 196 ILE ILE A . n A 1 157 LYS 157 197 197 LYS LYS A . n A 1 158 GLU 158 198 198 GLU GLU A . n A 1 159 GLU 159 199 199 GLU GLU A . n A 1 160 GLU 160 200 200 GLU GLU A . n A 1 161 ASN 161 201 201 ASN ASN A . n A 1 162 ILE 162 202 202 ILE ILE A . n A 1 163 LYS 163 203 203 LYS LYS A . n A 1 164 ARG 164 204 204 ARG ARG A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1 1 HOH HOH A . B 2 HOH 2 2 2 HOH HOH A . B 2 HOH 3 3 3 HOH HOH A . B 2 HOH 4 4 4 HOH HOH A . B 2 HOH 5 5 5 HOH HOH A . B 2 HOH 6 6 6 HOH HOH A . B 2 HOH 7 7 7 HOH HOH A . B 2 HOH 8 8 8 HOH HOH A . B 2 HOH 9 9 9 HOH HOH A . B 2 HOH 10 10 10 HOH HOH A . B 2 HOH 11 11 11 HOH HOH A . B 2 HOH 12 12 12 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 41 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 81 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 0.8660 50.5039 17.8329 0.7387 1.0422 1.3100 0.0466 0.2868 -0.4230 36.1768 54.0243 27.0077 46.2923 -26.7248 -35.0343 1.6310 1.2797 -2.9106 0.8117 3.2164 4.4723 2.3184 -1.9442 -2.7712 'X-RAY DIFFRACTION' 2 ? refined 12.1320 52.3679 17.4557 0.9032 0.3438 0.5366 -0.2740 -0.1667 0.0960 4.8166 -0.0495 2.5935 0.0403 -4.3001 0.2365 0.3997 -0.1690 -0.2307 -0.5734 0.1655 -0.2017 0.3414 -0.3567 0.4073 'X-RAY DIFFRACTION' 3 ? refined 24.0307 47.8269 16.9253 0.6422 1.1324 0.8164 -0.0388 -0.1933 -0.0532 7.4922 23.8729 8.0586 -2.6800 0.3234 -6.4721 -0.0146 0.5165 -0.5019 -0.9129 -0.0742 -2.0465 0.4269 0.6581 1.6709 'X-RAY DIFFRACTION' 4 ? refined 18.4052 45.3235 12.6360 0.4981 0.4036 0.7274 0.0922 0.2135 0.2509 29.7939 5.4263 21.4232 7.6684 22.9816 1.8466 -0.2748 -0.1007 0.3754 0.6958 -0.9104 -0.9461 -0.1054 0.0662 1.1312 'X-RAY DIFFRACTION' 5 ? refined 11.0060 42.7602 16.5845 0.4251 0.4313 0.5670 -0.0786 -0.0192 0.2193 6.9117 10.6110 17.3260 8.9587 10.8926 13.6961 0.6317 -0.0900 -0.5417 -0.1349 -0.5780 -0.7081 0.8421 0.9917 0.3049 'X-RAY DIFFRACTION' 6 ? refined 3.9302 43.1795 24.2550 0.6357 0.4489 0.5321 -0.0792 0.0770 -0.0409 25.6530 39.3449 8.7261 12.7807 -7.7534 -19.3376 0.6899 -0.7456 0.0556 -1.1722 0.1874 0.0856 1.8928 -0.9358 0.3895 'X-RAY DIFFRACTION' 7 ? refined 0.0956 49.3834 30.6096 1.1328 0.9645 0.9739 0.2682 0.0152 0.0410 12.8702 21.7243 19.1085 14.4680 0.3364 12.2887 -0.3656 1.0246 -0.6590 1.3113 0.4883 0.1640 0.3723 0.1054 -0.9362 'X-RAY DIFFRACTION' 8 ? refined 5.7767 62.2490 25.0043 0.6066 0.4901 0.6317 -0.0859 0.0831 0.0715 17.1134 24.3463 75.8473 11.9130 -21.5187 17.2489 0.8213 -0.1696 -0.6517 -0.3127 0.3705 0.3338 0.7846 -0.3327 0.0857 'X-RAY DIFFRACTION' 9 ? refined 7.2252 60.7458 16.6523 0.4471 0.3392 0.6576 -0.1673 -0.0212 -0.0314 4.4497 19.3447 74.2031 -11.0842 -10.9840 -0.4084 -0.3847 -0.5840 0.9688 0.0966 0.4190 -0.7839 0.4824 0.4878 0.4634 'X-RAY DIFFRACTION' 10 ? refined 7.1086 62.1733 8.0452 0.3356 0.2471 0.3574 0.0070 0.0337 -0.0006 4.0296 9.4372 30.7958 -3.3664 -6.8349 -5.8582 0.0001 0.1787 -0.1788 0.4343 -0.1986 0.4771 -0.0133 -0.1013 -1.6484 'X-RAY DIFFRACTION' 11 ? refined 9.5502 55.5788 0.4611 0.3251 0.1994 0.3474 -0.0002 0.0519 0.0303 5.2911 27.6085 14.6399 3.1718 -6.9647 9.2284 -0.2353 -0.0761 0.3115 0.0829 -0.0263 0.3252 -0.9448 0.0150 -0.2120 'X-RAY DIFFRACTION' 12 ? refined 6.4967 51.9562 4.0502 0.3002 0.2038 0.3465 -0.0443 -0.0528 0.0154 17.2500 11.9193 20.2689 -1.4774 0.7451 -9.1313 -0.3342 0.2040 0.1302 1.0534 -0.2897 1.0111 0.0908 0.4494 -0.8224 'X-RAY DIFFRACTION' 13 ? refined 5.2947 46.9788 9.2622 0.3945 0.2883 0.3345 -0.0628 0.0285 0.0042 -0.3386 11.6004 10.8564 0.0786 0.1829 -11.6363 0.0523 0.2701 -0.3224 -0.0436 0.0138 0.3803 -0.1580 0.2558 -0.2661 'X-RAY DIFFRACTION' 14 ? refined 11.1439 40.0172 6.0654 0.3519 0.2275 0.3683 -0.0073 0.0194 0.0438 30.0411 12.9159 13.8527 5.6110 -8.8119 -2.5635 0.3617 -0.4937 0.1320 -0.6549 -1.0374 -1.1350 -0.7898 0.7155 1.1634 'X-RAY DIFFRACTION' 15 ? refined 7.5345 41.6314 0.5370 0.4080 0.2818 0.3616 -0.0706 0.0217 0.0491 10.1672 11.9026 -0.7029 -2.3164 1.0838 -0.4546 -0.0617 0.1599 -0.0983 0.1283 -0.4088 0.3861 -0.4964 0.0323 -0.0467 'X-RAY DIFFRACTION' 16 ? refined 15.3037 44.1411 -2.3466 0.5104 0.4149 0.4120 0.2296 0.1451 0.1165 23.0278 21.3948 11.1059 23.5356 5.3676 5.8879 -0.5194 -0.0450 0.5644 0.0558 -0.8606 -0.8543 -0.5466 0.1973 0.4229 'X-RAY DIFFRACTION' 17 ? refined 17.8932 49.2267 3.6602 0.2908 0.3303 0.7367 -0.0046 0.0275 0.2127 12.9159 43.8431 29.6742 19.3866 -7.8046 9.3344 0.3569 -0.1063 -0.2506 -0.4189 -0.5972 -1.8130 1.5117 1.0326 1.0986 'X-RAY DIFFRACTION' 18 ? refined 17.7064 55.6343 6.4782 0.3247 0.3400 0.4813 -0.0345 0.0580 -0.0735 9.1966 23.3789 23.1316 14.0782 9.1560 6.2063 0.3089 -0.2454 -0.0635 0.1848 -0.2243 -0.5096 0.2794 0.3563 1.5088 'X-RAY DIFFRACTION' 19 ? refined 17.8212 62.6801 13.0068 0.4163 0.3301 0.4381 -0.0990 0.0481 -0.0244 27.6599 20.6081 17.7954 10.0377 17.8494 5.8543 -0.3005 0.3448 -0.0443 0.7616 0.6792 -1.1083 -0.0950 -1.0892 0.8008 'X-RAY DIFFRACTION' 20 ? refined 17.8755 71.7875 18.7987 0.8817 0.9077 0.7124 -0.1388 -0.1488 -0.1097 5.3004 67.7963 9.1412 20.3564 7.9583 27.7411 -0.6205 0.6458 -0.0252 0.4422 0.1375 0.6331 -1.1199 -0.4448 0.3245 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 . . . . ? A 45 A 50 'X-RAY DIFFRACTION' ? 2 2 . . . . ? A 51 A 59 'X-RAY DIFFRACTION' ? 3 3 . . . . ? A 60 A 67 'X-RAY DIFFRACTION' ? 4 4 . . . . ? A 68 A 73 'X-RAY DIFFRACTION' ? 5 5 . . . . ? A 74 A 79 'X-RAY DIFFRACTION' ? 6 6 . . . . ? A 80 A 87 'X-RAY DIFFRACTION' ? 7 7 . . . . ? A 88 A 132 'X-RAY DIFFRACTION' ? 8 8 . . . . ? A 133 A 137 'X-RAY DIFFRACTION' ? 9 9 . . . . ? A 138 A 142 'X-RAY DIFFRACTION' ? 10 10 . . . . ? A 143 A 149 'X-RAY DIFFRACTION' ? 11 11 . . . . ? A 150 A 154 'X-RAY DIFFRACTION' ? 12 12 . . . . ? A 155 A 159 'X-RAY DIFFRACTION' ? 13 13 . . . . ? A 160 A 164 'X-RAY DIFFRACTION' ? 14 14 . . . . ? A 165 A 168 'X-RAY DIFFRACTION' ? 15 15 . . . . ? A 169 A 175 'X-RAY DIFFRACTION' ? 16 16 . . . . ? A 176 A 181 'X-RAY DIFFRACTION' ? 17 17 . . . . ? A 182 A 186 'X-RAY DIFFRACTION' ? 18 18 . . . . ? A 187 A 191 'X-RAY DIFFRACTION' ? 19 19 . . . . ? A 192 A 198 'X-RAY DIFFRACTION' ? 20 20 . . . . ? A 199 A 204 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 5 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 6 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 7 SHELX . ? ? ? ? phasing ? ? ? 8 MLPHARE . ? ? ? ? phasing ? ? ? 9 DM . ? ? ? ? phasing ? ? ? 10 ARP/wARP . ? ? ? ? 'model building' ? ? ? 11 Coot . ? ? ? ? 'model building' ? ? ? 12 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 45 ? CG ? A GLU 5 CG 2 1 Y 1 A GLU 45 ? CD ? A GLU 5 CD 3 1 Y 1 A GLU 45 ? OE1 ? A GLU 5 OE1 4 1 Y 1 A GLU 45 ? OE2 ? A GLU 5 OE2 5 1 Y 1 A LYS 60 ? CG ? A LYS 20 CG 6 1 Y 1 A LYS 60 ? CD ? A LYS 20 CD 7 1 Y 1 A LYS 60 ? CE ? A LYS 20 CE 8 1 Y 1 A LYS 60 ? NZ ? A LYS 20 NZ 9 1 Y 1 A GLU 64 ? CG ? A GLU 24 CG 10 1 Y 1 A GLU 64 ? CD ? A GLU 24 CD 11 1 Y 1 A GLU 64 ? OE1 ? A GLU 24 OE1 12 1 Y 1 A GLU 64 ? OE2 ? A GLU 24 OE2 13 1 Y 1 A LYS 66 ? CG ? A LYS 26 CG 14 1 Y 1 A LYS 66 ? CD ? A LYS 26 CD 15 1 Y 1 A LYS 66 ? CE ? A LYS 26 CE 16 1 Y 1 A LYS 66 ? NZ ? A LYS 26 NZ 17 1 Y 1 A ARG 79 ? CG ? A ARG 39 CG 18 1 Y 1 A ARG 79 ? CD ? A ARG 39 CD 19 1 Y 1 A ARG 79 ? NE ? A ARG 39 NE 20 1 Y 1 A ARG 79 ? CZ ? A ARG 39 CZ 21 1 Y 1 A ARG 79 ? NH1 ? A ARG 39 NH1 22 1 Y 1 A ARG 79 ? NH2 ? A ARG 39 NH2 23 1 Y 1 A LYS 87 ? CG ? A LYS 47 CG 24 1 Y 1 A LYS 87 ? CD ? A LYS 47 CD 25 1 Y 1 A LYS 87 ? CE ? A LYS 47 CE 26 1 Y 1 A LYS 87 ? NZ ? A LYS 47 NZ 27 1 Y 1 A GLN 91 ? CG ? A GLN 51 CG 28 1 Y 1 A GLN 91 ? CD ? A GLN 51 CD 29 1 Y 1 A GLN 91 ? OE1 ? A GLN 51 OE1 30 1 Y 1 A GLN 91 ? NE2 ? A GLN 51 NE2 31 1 Y 1 A LYS 92 ? CG ? A LYS 52 CG 32 1 Y 1 A LYS 92 ? CD ? A LYS 52 CD 33 1 Y 1 A LYS 92 ? CE ? A LYS 52 CE 34 1 Y 1 A LYS 92 ? NZ ? A LYS 52 NZ 35 1 Y 1 A GLU 131 ? CG ? A GLU 91 CG 36 1 Y 1 A GLU 131 ? CD ? A GLU 91 CD 37 1 Y 1 A GLU 131 ? OE1 ? A GLU 91 OE1 38 1 Y 1 A GLU 131 ? OE2 ? A GLU 91 OE2 39 1 Y 1 A LYS 136 ? CG ? A LYS 96 CG 40 1 Y 1 A LYS 136 ? CD ? A LYS 96 CD 41 1 Y 1 A LYS 136 ? CE ? A LYS 96 CE 42 1 Y 1 A LYS 136 ? NZ ? A LYS 96 NZ 43 1 Y 1 A LYS 144 ? CG ? A LYS 104 CG 44 1 Y 1 A LYS 144 ? CD ? A LYS 104 CD 45 1 Y 1 A LYS 144 ? CE ? A LYS 104 CE 46 1 Y 1 A LYS 144 ? NZ ? A LYS 104 NZ 47 1 Y 1 A LYS 190 ? CG ? A LYS 150 CG 48 1 Y 1 A LYS 190 ? CD ? A LYS 150 CD 49 1 Y 1 A LYS 190 ? CE ? A LYS 150 CE 50 1 Y 1 A LYS 190 ? NZ ? A LYS 150 NZ 51 1 Y 1 A LYS 197 ? CG ? A LYS 157 CG 52 1 Y 1 A LYS 197 ? CD ? A LYS 157 CD 53 1 Y 1 A LYS 197 ? CE ? A LYS 157 CE 54 1 Y 1 A LYS 197 ? NZ ? A LYS 157 NZ 55 1 Y 1 A GLU 200 ? CG ? A GLU 160 CG 56 1 Y 1 A GLU 200 ? CD ? A GLU 160 CD 57 1 Y 1 A GLU 200 ? OE1 ? A GLU 160 OE1 58 1 Y 1 A GLU 200 ? OE2 ? A GLU 160 OE2 59 1 Y 1 A ARG 204 ? CG ? A ARG 164 CG 60 1 Y 1 A ARG 204 ? CD ? A ARG 164 CD 61 1 Y 1 A ARG 204 ? NE ? A ARG 164 NE 62 1 Y 1 A ARG 204 ? CZ ? A ARG 164 CZ 63 1 Y 1 A ARG 204 ? NH1 ? A ARG 164 NH1 64 1 Y 1 A ARG 204 ? NH2 ? A ARG 164 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 41 ? A GLY 1 2 1 Y 1 A ALA 42 ? A ALA 2 3 1 Y 1 A GLU 43 ? A GLU 3 4 1 Y 1 A LYS 44 ? A LYS 4 5 1 Y 1 A HIS 93 ? A HIS 53 6 1 Y 1 A MSE 94 ? A MSE 54 7 1 Y 1 A VAL 95 ? A VAL 55 8 1 Y 1 A LEU 96 ? A LEU 56 9 1 Y 1 A ASN 97 ? A ASN 57 10 1 Y 1 A GLU 98 ? A GLU 58 11 1 Y 1 A ALA 99 ? A ALA 59 12 1 Y 1 A LEU 100 ? A LEU 60 13 1 Y 1 A LYS 101 ? A LYS 61 14 1 Y 1 A THR 102 ? A THR 62 15 1 Y 1 A ASN 103 ? A ASN 63 16 1 Y 1 A ALA 104 ? A ALA 64 17 1 Y 1 A ILE 105 ? A ILE 65 18 1 Y 1 A LEU 106 ? A LEU 66 19 1 Y 1 A GLU 107 ? A GLU 67 20 1 Y 1 A ASP 108 ? A ASP 68 21 1 Y 1 A SER 109 ? A SER 69 22 1 Y 1 A ALA 110 ? A ALA 70 23 1 Y 1 A TYR 111 ? A TYR 71 24 1 Y 1 A PHE 112 ? A PHE 72 25 1 Y 1 A ASP 113 ? A ASP 73 26 1 Y 1 A ASP 114 ? A ASP 74 27 1 Y 1 A GLU 115 ? A GLU 75 28 1 Y 1 A GLY 116 ? A GLY 76 29 1 Y 1 A HIS 117 ? A HIS 77 30 1 Y 1 A ASN 118 ? A ASN 78 31 1 Y 1 A ILE 119 ? A ILE 79 32 1 Y 1 A ASN 120 ? A ASN 80 33 1 Y 1 A ASN 121 ? A ASN 81 34 1 Y 1 A TYR 122 ? A TYR 82 35 1 Y 1 A LYS 123 ? A LYS 83 36 1 Y 1 A SER 124 ? A SER 84 37 1 Y 1 A SER 125 ? A SER 85 38 1 Y 1 A GLU 126 ? A GLU 86 39 1 Y 1 A SER 127 ? A SER 87 40 1 Y 1 A ASN 128 ? A ASN 88 41 1 Y 1 A PRO 129 ? A PRO 89 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #