HEADER HYDROLASE 20-MAY-10 3N3K TITLE THE CATALYTIC DOMAIN OF USP8 IN COMPLEX WITH A USP8 SPECIFIC INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: UBIQUITIN THIOESTERASE 8, UBIQUITIN-SPECIFIC-PROCESSING COMPND 6 PROTEASE 8, DEUBIQUITINATING ENZYME 8, UBIQUITIN ISOPEPTIDASE Y, COMPND 7 HUBPY; COMPND 8 EC: 3.1.2.15; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: UBIQUITIN; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA0055, UBPY, USP8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-LIC; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: RPS27A, UBA52, UBA80, UBB, UBC, UBCEP1, UBCEP2, UBQ; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28ALIC KEYWDS HYDROLASE, PROTEASE, THIOL PROTEASE, UBL CONJUGATION PATHWAY, KEYWDS 2 DEUBIQUITINATING ENZYME, DUB, ZINC RIBBON, INHIBITOR, UBIQUITIN, KEYWDS 3 ISOPEPTIDE BOND, NUCLEUS, PHOSPHOPROTEIN, STRUCTURAL GENOMICS, KEYWDS 4 STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,G.V.AVVAKUMOV,S.XUE,Y.LI,A.ALLALI-HASSANI,R.LAM,A.ERNST, AUTHOR 2 S.SIDHU,J.WEIGELT,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV, AUTHOR 3 S.DHE-PAGANON,STRUCTURAL GENOMICS CONSORTIUM,STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (SGC) REVDAT 4 06-SEP-23 3N3K 1 REMARK SEQADV LINK REVDAT 3 14-MAR-18 3N3K 1 SEQADV REVDAT 2 27-FEB-13 3N3K 1 JRNL VERSN REVDAT 1 23-JUN-10 3N3K 0 JRNL AUTH A.ERNST,G.AVVAKUMOV,J.TONG,Y.FAN,Y.ZHAO,P.ALBERTS,A.PERSAUD, JRNL AUTH 2 J.R.WALKER,A.M.NECULAI,D.NECULAI,A.VOROBYOV,P.GARG,L.BEATTY, JRNL AUTH 3 P.K.CHAN,Y.C.JUANG,M.C.LANDRY,C.YEH,E.ZEQIRAJ,K.KARAMBOULAS, JRNL AUTH 4 A.ALLALI-HASSANI,M.VEDADI,M.TYERS,J.MOFFAT,F.SICHERI, JRNL AUTH 5 L.PELLETIER,D.DUROCHER,B.RAUGHT,D.ROTIN,J.YANG,M.F.MORAN, JRNL AUTH 6 S.DHE-PAGANON,S.S.SIDHU JRNL TITL A STRATEGY FOR MODULATION OF ENZYMES IN THE UBIQUITIN JRNL TITL 2 SYSTEM. JRNL REF SCIENCE V. 339 590 2013 JRNL REFN ISSN 0036-8075 JRNL PMID 23287719 JRNL DOI 10.1126/SCIENCE.1230161 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.V.AVVAKUMOV,J.R.WALKER,S.XUE,P.J.FINERTY,F.MACKENZIE, REMARK 1 AUTH 2 E.M.NEWMAN,S.DHE-PAGANON REMARK 1 TITL AMINO-TERMINAL DIMERIZATION, NRDP1-RHODANESE INTERACTION, REMARK 1 TITL 2 AND INHIBITED CATALYTIC DOMAIN CONFORMATION OF THE REMARK 1 TITL 3 UBIQUITIN-SPECIFIC PROTEASE 8 (USP8). REMARK 1 REF J.BIOL.CHEM. V. 281 38061 2006 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 17035239 REMARK 1 DOI 10.1074/JBC.M606704200 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 769 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1063 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3463 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : 0.54000 REMARK 3 B12 (A**2) : -0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.318 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.216 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.248 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3567 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4809 ; 1.018 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 432 ; 5.465 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;33.477 ;24.400 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 653 ;16.933 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.692 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 518 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2694 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2149 ; 0.364 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3456 ; 0.712 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1418 ; 0.995 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1353 ; 1.691 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 23 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 756 A 763 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1465 1.5572 -3.7201 REMARK 3 T TENSOR REMARK 3 T11: 0.3303 T22: 0.1695 REMARK 3 T33: 0.3937 T12: 0.1519 REMARK 3 T13: 0.1121 T23: -0.1468 REMARK 3 L TENSOR REMARK 3 L11: 16.3849 L22: 1.5276 REMARK 3 L33: 1.4699 L12: 5.6546 REMARK 3 L13: -5.7204 L23: -2.1598 REMARK 3 S TENSOR REMARK 3 S11: 0.2789 S12: -0.0496 S13: 0.4118 REMARK 3 S21: 0.1332 S22: -0.0475 S23: 0.1841 REMARK 3 S31: -0.1510 S32: 0.0080 S33: -0.2315 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 764 A 775 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9978 -1.7997 -7.6277 REMARK 3 T TENSOR REMARK 3 T11: 0.1632 T22: 0.0183 REMARK 3 T33: 0.1834 T12: -0.0100 REMARK 3 T13: -0.0435 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 4.0135 L22: 3.3241 REMARK 3 L33: 4.5077 L12: 1.1889 REMARK 3 L13: -0.1078 L23: 3.0328 REMARK 3 S TENSOR REMARK 3 S11: 0.0870 S12: 0.0876 S13: 0.3574 REMARK 3 S21: 0.1267 S22: 0.0319 S23: 0.0178 REMARK 3 S31: -0.0610 S32: -0.0432 S33: -0.1190 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 776 A 805 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7383 -14.0659 -9.9334 REMARK 3 T TENSOR REMARK 3 T11: 0.1441 T22: 0.1084 REMARK 3 T33: 0.1342 T12: -0.0194 REMARK 3 T13: -0.0165 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.7807 L22: 0.6688 REMARK 3 L33: 0.2257 L12: 0.2203 REMARK 3 L13: 0.0839 L23: 0.4038 REMARK 3 S TENSOR REMARK 3 S11: -0.0471 S12: -0.0043 S13: 0.1012 REMARK 3 S21: -0.0497 S22: -0.0302 S23: 0.1180 REMARK 3 S31: -0.0372 S32: 0.0081 S33: 0.0773 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 806 A 820 REMARK 3 ORIGIN FOR THE GROUP (A): -13.6241 -10.6837 -10.9981 REMARK 3 T TENSOR REMARK 3 T11: 0.0932 T22: 0.1235 REMARK 3 T33: 0.2494 T12: 0.0362 REMARK 3 T13: -0.0325 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 3.7953 L22: 4.2810 REMARK 3 L33: 3.2554 L12: 2.3612 REMARK 3 L13: -1.2722 L23: -1.7602 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: 0.0950 S13: 0.6801 REMARK 3 S21: 0.0341 S22: 0.1744 S23: 0.5249 REMARK 3 S31: -0.2221 S32: -0.2922 S33: -0.1824 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 821 A 862 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2384 -11.1329 -4.0012 REMARK 3 T TENSOR REMARK 3 T11: 0.1437 T22: 0.1137 REMARK 3 T33: 0.1476 T12: 0.0102 REMARK 3 T13: -0.0018 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 1.6036 L22: 1.3572 REMARK 3 L33: 1.3024 L12: 0.8427 REMARK 3 L13: -0.1144 L23: -0.3953 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: -0.1349 S13: 0.1142 REMARK 3 S21: 0.1409 S22: -0.0975 S23: 0.0841 REMARK 3 S31: -0.1003 S32: -0.1177 S33: 0.0786 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 863 A 886 REMARK 3 ORIGIN FOR THE GROUP (A): -3.2934 -21.9525 -5.4593 REMARK 3 T TENSOR REMARK 3 T11: 0.1392 T22: 0.1400 REMARK 3 T33: 0.1268 T12: -0.0115 REMARK 3 T13: 0.0128 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.2451 L22: 0.6581 REMARK 3 L33: 1.2932 L12: -0.0429 REMARK 3 L13: 0.9785 L23: 0.1889 REMARK 3 S TENSOR REMARK 3 S11: 0.1004 S12: 0.0276 S13: 0.0670 REMARK 3 S21: 0.0862 S22: -0.1366 S23: 0.0660 REMARK 3 S31: 0.0048 S32: -0.0032 S33: 0.0362 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 887 A 901 REMARK 3 ORIGIN FOR THE GROUP (A): -23.9573 -33.1261 -14.7982 REMARK 3 T TENSOR REMARK 3 T11: 0.2439 T22: 0.2039 REMARK 3 T33: 0.3320 T12: -0.0311 REMARK 3 T13: -0.0971 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 2.5827 L22: 2.5554 REMARK 3 L33: 2.1665 L12: 0.9577 REMARK 3 L13: -0.9946 L23: 1.7642 REMARK 3 S TENSOR REMARK 3 S11: -0.3078 S12: -0.0978 S13: 0.0826 REMARK 3 S21: -0.0671 S22: -0.3346 S23: 0.8178 REMARK 3 S31: 0.1835 S32: -0.2824 S33: 0.6424 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 902 A 910 REMARK 3 ORIGIN FOR THE GROUP (A): -17.8908 -37.7292 -26.2561 REMARK 3 T TENSOR REMARK 3 T11: 0.1638 T22: 0.4276 REMARK 3 T33: 0.1100 T12: 0.0170 REMARK 3 T13: -0.0509 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 7.4082 L22: 12.6897 REMARK 3 L33: 4.2316 L12: 1.9361 REMARK 3 L13: 3.8911 L23: 6.4324 REMARK 3 S TENSOR REMARK 3 S11: 0.2947 S12: 0.5707 S13: -0.1829 REMARK 3 S21: -0.5411 S22: -0.3169 S23: 0.2395 REMARK 3 S31: -0.1452 S32: 0.0051 S33: 0.0221 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 911 A 932 REMARK 3 ORIGIN FOR THE GROUP (A): -12.9963 -27.1293 -18.6016 REMARK 3 T TENSOR REMARK 3 T11: 0.1206 T22: 0.1187 REMARK 3 T33: 0.1477 T12: -0.0217 REMARK 3 T13: 0.0049 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.1825 L22: 0.9051 REMARK 3 L33: 0.7240 L12: 1.0011 REMARK 3 L13: 0.3439 L23: 0.4948 REMARK 3 S TENSOR REMARK 3 S11: -0.0545 S12: -0.0192 S13: 0.1262 REMARK 3 S21: -0.0385 S22: -0.0217 S23: 0.1116 REMARK 3 S31: 0.0365 S32: -0.0872 S33: 0.0763 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 933 A 971 REMARK 3 ORIGIN FOR THE GROUP (A): -1.2369 -41.9922 -16.9596 REMARK 3 T TENSOR REMARK 3 T11: 0.1471 T22: 0.1188 REMARK 3 T33: 0.2059 T12: 0.0050 REMARK 3 T13: -0.0195 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.8382 L22: 0.9287 REMARK 3 L33: 0.5179 L12: 0.8740 REMARK 3 L13: -0.5411 L23: -0.5011 REMARK 3 S TENSOR REMARK 3 S11: -0.1175 S12: 0.0354 S13: -0.1186 REMARK 3 S21: -0.1297 S22: 0.0647 S23: -0.0593 REMARK 3 S31: 0.1070 S32: -0.0111 S33: 0.0528 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 972 A 990 REMARK 3 ORIGIN FOR THE GROUP (A): -9.2690 -51.2953 -8.5887 REMARK 3 T TENSOR REMARK 3 T11: 0.1923 T22: 0.1148 REMARK 3 T33: 0.2012 T12: 0.0230 REMARK 3 T13: -0.0259 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 2.4822 L22: 3.0376 REMARK 3 L33: 0.9350 L12: 2.6004 REMARK 3 L13: -1.3399 L23: -1.1005 REMARK 3 S TENSOR REMARK 3 S11: 0.0700 S12: -0.1581 S13: 0.0954 REMARK 3 S21: 0.2030 S22: -0.0326 S23: 0.0107 REMARK 3 S31: 0.1022 S32: 0.2127 S33: -0.0374 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 991 A 1020 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5530 -38.6458 -11.5713 REMARK 3 T TENSOR REMARK 3 T11: 0.1799 T22: 0.1454 REMARK 3 T33: 0.1881 T12: -0.0304 REMARK 3 T13: -0.0365 T23: 0.0431 REMARK 3 L TENSOR REMARK 3 L11: 0.3694 L22: 0.3748 REMARK 3 L33: 0.0607 L12: 0.3272 REMARK 3 L13: 0.1187 L23: 0.1533 REMARK 3 S TENSOR REMARK 3 S11: 0.0568 S12: -0.0656 S13: -0.1355 REMARK 3 S21: 0.1002 S22: -0.0400 S23: -0.0268 REMARK 3 S31: 0.0614 S32: -0.0256 S33: -0.0168 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1021 A 1049 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1921 -32.9898 -23.0112 REMARK 3 T TENSOR REMARK 3 T11: 0.1120 T22: 0.1672 REMARK 3 T33: 0.1463 T12: 0.0477 REMARK 3 T13: -0.0051 T23: -0.0422 REMARK 3 L TENSOR REMARK 3 L11: 0.8306 L22: 1.2843 REMARK 3 L33: 1.6109 L12: 0.8091 REMARK 3 L13: -0.4468 L23: -0.4347 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: 0.2273 S13: -0.0269 REMARK 3 S21: -0.1351 S22: 0.0676 S23: 0.0579 REMARK 3 S31: 0.1322 S32: 0.1770 S33: -0.0537 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1050 A 1079 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9015 -20.8227 -15.2498 REMARK 3 T TENSOR REMARK 3 T11: 0.1140 T22: 0.1299 REMARK 3 T33: 0.1324 T12: -0.0104 REMARK 3 T13: 0.0064 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.1296 L22: 0.7949 REMARK 3 L33: 1.3224 L12: -0.2460 REMARK 3 L13: 1.1164 L23: 0.0570 REMARK 3 S TENSOR REMARK 3 S11: -0.0354 S12: 0.0949 S13: 0.0489 REMARK 3 S21: -0.0001 S22: 0.0049 S23: -0.1324 REMARK 3 S31: -0.1364 S32: 0.0590 S33: 0.0305 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1080 A 1110 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6018 -19.6950 -16.5907 REMARK 3 T TENSOR REMARK 3 T11: 0.1155 T22: 0.1637 REMARK 3 T33: 0.1517 T12: -0.0382 REMARK 3 T13: 0.0033 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 1.2836 L22: 0.6662 REMARK 3 L33: 0.3507 L12: 0.3492 REMARK 3 L13: 0.3971 L23: 0.4593 REMARK 3 S TENSOR REMARK 3 S11: -0.0410 S12: 0.1065 S13: 0.0139 REMARK 3 S21: -0.0533 S22: 0.0681 S23: -0.1028 REMARK 3 S31: -0.0473 S32: 0.1066 S33: -0.0271 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 8 REMARK 3 ORIGIN FOR THE GROUP (A): -15.1950 -32.8535 -3.8824 REMARK 3 T TENSOR REMARK 3 T11: 0.1915 T22: 0.2013 REMARK 3 T33: 0.1362 T12: -0.0650 REMARK 3 T13: 0.0553 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 0.1550 L22: 1.3035 REMARK 3 L33: 4.8100 L12: -0.4847 REMARK 3 L13: -0.8218 L23: 0.2357 REMARK 3 S TENSOR REMARK 3 S11: -0.1738 S12: 0.0507 S13: -0.0119 REMARK 3 S21: 0.3765 S22: 0.1653 S23: 0.0724 REMARK 3 S31: 0.3472 S32: -0.5755 S33: 0.0085 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 17 REMARK 3 ORIGIN FOR THE GROUP (A): -14.2239 -35.5263 -6.6670 REMARK 3 T TENSOR REMARK 3 T11: 0.2629 T22: 0.3442 REMARK 3 T33: 0.2032 T12: -0.1838 REMARK 3 T13: 0.0655 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 10.1276 L22: 1.4037 REMARK 3 L33: 6.2174 L12: 3.0022 REMARK 3 L13: -5.7892 L23: -2.6723 REMARK 3 S TENSOR REMARK 3 S11: 0.4628 S12: 0.1299 S13: -0.5451 REMARK 3 S21: 0.2898 S22: -0.1755 S23: 0.1012 REMARK 3 S31: -0.1610 S32: -0.2828 S33: -0.2873 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 18 B 27 REMARK 3 ORIGIN FOR THE GROUP (A): -16.8659 -39.0502 7.2872 REMARK 3 T TENSOR REMARK 3 T11: 0.1991 T22: 0.6812 REMARK 3 T33: 0.1499 T12: -0.3127 REMARK 3 T13: 0.1217 T23: -0.0765 REMARK 3 L TENSOR REMARK 3 L11: 11.2899 L22: 0.4311 REMARK 3 L33: 13.5672 L12: 1.8850 REMARK 3 L13: -13.3898 L23: -2.2819 REMARK 3 S TENSOR REMARK 3 S11: -0.1432 S12: 0.2113 S13: -0.5769 REMARK 3 S21: 0.1882 S22: -0.4286 S23: -0.0250 REMARK 3 S31: 0.0608 S32: -0.1556 S33: 0.5718 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 28 B 38 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4171 -43.5057 -1.7781 REMARK 3 T TENSOR REMARK 3 T11: 0.2463 T22: 0.1017 REMARK 3 T33: 0.2117 T12: -0.1168 REMARK 3 T13: -0.0423 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 10.3961 L22: 4.1599 REMARK 3 L33: 4.2051 L12: -2.9191 REMARK 3 L13: 2.5630 L23: 2.5892 REMARK 3 S TENSOR REMARK 3 S11: -0.0304 S12: 0.0218 S13: 0.0655 REMARK 3 S21: -0.1371 S22: -0.1820 S23: 0.1630 REMARK 3 S31: 0.0018 S32: -0.1479 S33: 0.2124 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 39 B 46 REMARK 3 ORIGIN FOR THE GROUP (A): -6.3424 -33.9615 3.5473 REMARK 3 T TENSOR REMARK 3 T11: 0.1702 T22: 0.2084 REMARK 3 T33: 0.1209 T12: -0.1151 REMARK 3 T13: -0.0418 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.8319 L22: 5.1129 REMARK 3 L33: 3.1510 L12: 3.1525 REMARK 3 L13: -1.0494 L23: 1.1404 REMARK 3 S TENSOR REMARK 3 S11: 0.3410 S12: -0.2544 S13: -0.1915 REMARK 3 S21: 0.5105 S22: -0.2009 S23: -0.4078 REMARK 3 S31: 0.1176 S32: 0.1349 S33: -0.1401 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 47 B 62 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1122 -30.6733 9.6865 REMARK 3 T TENSOR REMARK 3 T11: 0.1913 T22: 0.2750 REMARK 3 T33: 0.0837 T12: -0.1054 REMARK 3 T13: 0.1164 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 4.8757 L22: 6.5215 REMARK 3 L33: 7.2942 L12: 0.3076 REMARK 3 L13: 0.7086 L23: 0.0359 REMARK 3 S TENSOR REMARK 3 S11: 0.4436 S12: -0.9048 S13: 0.2295 REMARK 3 S21: 0.1994 S22: -0.3915 S23: 0.3719 REMARK 3 S31: 0.0892 S32: -0.1317 S33: -0.0522 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 63 B 69 REMARK 3 ORIGIN FOR THE GROUP (A): -15.4660 -29.4622 -1.1608 REMARK 3 T TENSOR REMARK 3 T11: 0.2158 T22: 0.2544 REMARK 3 T33: 0.2268 T12: 0.0095 REMARK 3 T13: -0.0660 T23: -0.0685 REMARK 3 L TENSOR REMARK 3 L11: 1.0055 L22: 1.6943 REMARK 3 L33: 3.5021 L12: 1.2236 REMARK 3 L13: -0.6263 L23: 0.5008 REMARK 3 S TENSOR REMARK 3 S11: 0.0328 S12: -0.0621 S13: 0.0801 REMARK 3 S21: 0.1502 S22: -0.1726 S23: 0.0184 REMARK 3 S31: -0.0991 S32: -0.3831 S33: 0.1398 REMARK 3 REMARK 3 TLS GROUP : 23 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 70 B 74 REMARK 3 ORIGIN FOR THE GROUP (A): 1.8325 -37.6651 0.5635 REMARK 3 T TENSOR REMARK 3 T11: 1.2872 T22: 0.1434 REMARK 3 T33: 0.5478 T12: -0.1435 REMARK 3 T13: -0.2393 T23: 0.3243 REMARK 3 L TENSOR REMARK 3 L11: 18.6424 L22: -3.2358 REMARK 3 L33: -0.2298 L12: 1.3998 REMARK 3 L13: 5.6305 L23: 1.2593 REMARK 3 S TENSOR REMARK 3 S11: 0.0285 S12: -0.1297 S13: 0.5963 REMARK 3 S21: -0.0821 S22: -0.1380 S23: -0.1437 REMARK 3 S31: 0.2432 S32: 0.0043 S33: 0.1095 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3N3K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059335. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15464 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 37.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16100 REMARK 200 FOR THE DATA SET : 17.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.53700 REMARK 200 FOR SHELL : 5.890 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2GFO, 3MTN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG3350, 0.1 M BIS-TRIS, 0.2 M REMARK 280 AMMONIUM ACETATE, 1 MM DTT, PH 6.3, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.51633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 121.03267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.77450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 151.29083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.25817 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 715 REMARK 465 GLY A 716 REMARK 465 SER A 717 REMARK 465 SER A 718 REMARK 465 HIS A 719 REMARK 465 HIS A 720 REMARK 465 HIS A 721 REMARK 465 HIS A 722 REMARK 465 HIS A 723 REMARK 465 HIS A 724 REMARK 465 SER A 725 REMARK 465 SER A 726 REMARK 465 GLY A 727 REMARK 465 LEU A 728 REMARK 465 VAL A 729 REMARK 465 PRO A 730 REMARK 465 ARG A 731 REMARK 465 GLY A 732 REMARK 465 SER A 733 REMARK 465 PRO A 734 REMARK 465 THR A 735 REMARK 465 VAL A 736 REMARK 465 THR A 737 REMARK 465 PRO A 738 REMARK 465 THR A 739 REMARK 465 VAL A 740 REMARK 465 ASN A 741 REMARK 465 ARG A 742 REMARK 465 GLU A 743 REMARK 465 ASN A 744 REMARK 465 LYS A 745 REMARK 465 PRO A 746 REMARK 465 THR A 747 REMARK 465 CYS A 748 REMARK 465 TYR A 749 REMARK 465 PRO A 750 REMARK 465 LYS A 751 REMARK 465 ALA A 752 REMARK 465 GLU A 753 REMARK 465 ILE A 754 REMARK 465 SER A 755 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 GLY B 75 REMARK 465 GLY B 76 REMARK 465 GLY B 77 REMARK 465 GLY B 78 REMARK 465 GLY B 79 REMARK 465 GLY B 80 REMARK 465 SER B 81 REMARK 465 GLY B 82 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 756 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1019 NE CZ NH1 NH2 REMARK 470 ARG B 54 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 800 -27.87 74.78 REMARK 500 ASN A 858 110.59 -163.78 REMARK 500 TYR A 893 51.28 -101.57 REMARK 500 TYR A 893 54.19 -101.57 REMARK 500 THR A 938 -62.88 -97.84 REMARK 500 SER A 960 -47.50 -132.39 REMARK 500 ASP A 979 -107.75 49.33 REMARK 500 ASP A1085 -121.52 52.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 936 SG REMARK 620 2 CYS A 939 SG 103.7 REMARK 620 3 CYS A 985 SG 110.1 105.8 REMARK 620 4 CYS A 988 SG 110.5 113.4 112.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GFO RELATED DB: PDB REMARK 900 STRUCTURE OF THE CATALYTIC DOMAIN OF THE HUMAN UBIQUITIN CARBOXYL- REMARK 900 TERMINAL HYDROLASE 8 REMARK 900 RELATED ID: 2A9U RELATED DB: PDB REMARK 900 STRUCTURE OF THE N-TERMINAL DOMAIN OF THE HUMAN UBIQUITIN CARBOXYL- REMARK 900 TERMINAL HYDROLASE 8 (USP8) REMARK 900 RELATED ID: 1WHB RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE RHODANESE-LIKE DOMAIN IN HUMAN UBIQUITIN REMARK 900 SPECIFIC PROTEASE 8 (UBP8) REMARK 900 RELATED ID: 2FZP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE USP8 INTERACTION DOMAIN OF HUMAN NRDP1 DBREF 3N3K A 734 1110 UNP P40818 UBP8_HUMAN 734 1110 DBREF 3N3K B 1 76 UNP P62988 UBIQ_HUMAN 1 76 SEQADV 3N3K MET A 715 UNP P40818 EXPRESSION TAG SEQADV 3N3K GLY A 716 UNP P40818 EXPRESSION TAG SEQADV 3N3K SER A 717 UNP P40818 EXPRESSION TAG SEQADV 3N3K SER A 718 UNP P40818 EXPRESSION TAG SEQADV 3N3K HIS A 719 UNP P40818 EXPRESSION TAG SEQADV 3N3K HIS A 720 UNP P40818 EXPRESSION TAG SEQADV 3N3K HIS A 721 UNP P40818 EXPRESSION TAG SEQADV 3N3K HIS A 722 UNP P40818 EXPRESSION TAG SEQADV 3N3K HIS A 723 UNP P40818 EXPRESSION TAG SEQADV 3N3K HIS A 724 UNP P40818 EXPRESSION TAG SEQADV 3N3K SER A 725 UNP P40818 EXPRESSION TAG SEQADV 3N3K SER A 726 UNP P40818 EXPRESSION TAG SEQADV 3N3K GLY A 727 UNP P40818 EXPRESSION TAG SEQADV 3N3K LEU A 728 UNP P40818 EXPRESSION TAG SEQADV 3N3K VAL A 729 UNP P40818 EXPRESSION TAG SEQADV 3N3K PRO A 730 UNP P40818 EXPRESSION TAG SEQADV 3N3K ARG A 731 UNP P40818 EXPRESSION TAG SEQADV 3N3K GLY A 732 UNP P40818 EXPRESSION TAG SEQADV 3N3K SER A 733 UNP P40818 EXPRESSION TAG SEQADV 3N3K GLY B -2 UNP P62988 EXPRESSION TAG SEQADV 3N3K SER B -1 UNP P62988 EXPRESSION TAG SEQADV 3N3K HIS B 0 UNP P62988 EXPRESSION TAG SEQADV 3N3K ARG B 2 UNP P62988 GLN 2 ENGINEERED MUTATION SEQADV 3N3K VAL B 4 UNP P62988 PHE 4 ENGINEERED MUTATION SEQADV 3N3K MET B 9 UNP P62988 THR 9 ENGINEERED MUTATION SEQADV 3N3K ARG B 11 UNP P62988 LYS 11 ENGINEERED MUTATION SEQADV 3N3K ILE B 14 UNP P62988 THR 14 ENGINEERED MUTATION SEQADV 3N3K HIS B 62 UNP P62988 GLN 62 ENGINEERED MUTATION SEQADV 3N3K ASN B 63 UNP P62988 LYS 63 ENGINEERED MUTATION SEQADV 3N3K HIS B 64 UNP P62988 GLU 64 ENGINEERED MUTATION SEQADV 3N3K ALA B 66 UNP P62988 THR 66 ENGINEERED MUTATION SEQADV 3N3K TYR B 68 UNP P62988 HIS 68 ENGINEERED MUTATION SEQADV 3N3K LEU B 70 UNP P62988 VAL 70 ENGINEERED MUTATION SEQADV 3N3K LYS B 72 UNP P62988 ARG 72 ENGINEERED MUTATION SEQADV 3N3K GLY B 77 UNP P62988 EXPRESSION TAG SEQADV 3N3K GLY B 78 UNP P62988 EXPRESSION TAG SEQADV 3N3K GLY B 79 UNP P62988 EXPRESSION TAG SEQADV 3N3K GLY B 80 UNP P62988 EXPRESSION TAG SEQADV 3N3K SER B 81 UNP P62988 EXPRESSION TAG SEQADV 3N3K GLY B 82 UNP P62988 EXPRESSION TAG SEQRES 1 A 396 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 396 LEU VAL PRO ARG GLY SER PRO THR VAL THR PRO THR VAL SEQRES 3 A 396 ASN ARG GLU ASN LYS PRO THR CYS TYR PRO LYS ALA GLU SEQRES 4 A 396 ILE SER ARG LEU SER ALA SER GLN ILE ARG ASN LEU ASN SEQRES 5 A 396 PRO VAL PHE GLY GLY SER GLY PRO ALA LEU THR GLY LEU SEQRES 6 A 396 ARG ASN LEU GLY ASN THR CYS TYR MET ASN SER ILE LEU SEQRES 7 A 396 GLN CYS LEU CYS ASN ALA PRO HIS LEU ALA ASP TYR PHE SEQRES 8 A 396 ASN ARG ASN CYS TYR GLN ASP ASP ILE ASN ARG SER ASN SEQRES 9 A 396 LEU LEU GLY HIS LYS GLY GLU VAL ALA GLU GLU PHE GLY SEQRES 10 A 396 ILE ILE MET LYS ALA LEU TRP THR GLY GLN TYR ARG TYR SEQRES 11 A 396 ILE SER PRO LYS ASP PHE LYS ILE THR ILE GLY LYS ILE SEQRES 12 A 396 ASN ASP GLN PHE ALA GLY TYR SER GLN GLN ASP SER GLN SEQRES 13 A 396 GLU LEU LEU LEU PHE LEU MET ASP GLY LEU HIS GLU ASP SEQRES 14 A 396 LEU ASN LYS ALA ASP ASN ARG LYS ARG TYR LYS GLU GLU SEQRES 15 A 396 ASN ASN ASP HIS LEU ASP ASP PHE LYS ALA ALA GLU HIS SEQRES 16 A 396 ALA TRP GLN LYS HIS LYS GLN LEU ASN GLU SER ILE ILE SEQRES 17 A 396 VAL ALA LEU PHE GLN GLY GLN PHE LYS SER THR VAL GLN SEQRES 18 A 396 CYS LEU THR CYS HIS LYS LYS SER ARG THR PHE GLU ALA SEQRES 19 A 396 PHE MET TYR LEU SER LEU PRO LEU ALA SER THR SER LYS SEQRES 20 A 396 CYS THR LEU GLN ASP CYS LEU ARG LEU PHE SER LYS GLU SEQRES 21 A 396 GLU LYS LEU THR ASP ASN ASN ARG PHE TYR CYS SER HIS SEQRES 22 A 396 CYS ARG ALA ARG ARG ASP SER LEU LYS LYS ILE GLU ILE SEQRES 23 A 396 TRP LYS LEU PRO PRO VAL LEU LEU VAL HIS LEU LYS ARG SEQRES 24 A 396 PHE SER TYR ASP GLY ARG TRP LYS GLN LYS LEU GLN THR SEQRES 25 A 396 SER VAL ASP PHE PRO LEU GLU ASN LEU ASP LEU SER GLN SEQRES 26 A 396 TYR VAL ILE GLY PRO LYS ASN ASN LEU LYS LYS TYR ASN SEQRES 27 A 396 LEU PHE SER VAL SER ASN HIS TYR GLY GLY LEU ASP GLY SEQRES 28 A 396 GLY HIS TYR THR ALA TYR CYS LYS ASN ALA ALA ARG GLN SEQRES 29 A 396 ARG TRP PHE LYS PHE ASP ASP HIS GLU VAL SER ASP ILE SEQRES 30 A 396 SER VAL SER SER VAL LYS SER SER ALA ALA TYR ILE LEU SEQRES 31 A 396 PHE TYR THR SER LEU GLY SEQRES 1 B 85 GLY SER HIS MET ARG ILE VAL VAL LYS THR LEU MET GLY SEQRES 2 B 85 ARG THR ILE ILE LEU GLU VAL GLU PRO SER ASP THR ILE SEQRES 3 B 85 GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE SEQRES 4 B 85 PRO PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN SEQRES 5 B 85 LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE HIS SEQRES 6 B 85 ASN HIS SER ALA LEU TYR LEU LEU LEU LYS LEU ARG GLY SEQRES 7 B 85 GLY GLY GLY GLY GLY SER GLY HET ZN A 1 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *112(H2 O) HELIX 1 1 SER A 758 ASN A 766 1 9 HELIX 2 2 THR A 785 ASN A 797 1 13 HELIX 3 3 HIS A 800 ARG A 807 1 8 HELIX 4 4 ASN A 808 ASP A 813 5 6 HELIX 5 5 GLY A 824 GLY A 840 1 17 HELIX 6 6 PRO A 847 ASN A 858 1 12 HELIX 7 7 ASP A 859 ALA A 862 5 4 HELIX 8 8 ASP A 868 LEU A 884 1 17 HELIX 9 9 ASP A 902 ASN A 918 1 17 HELIX 10 10 SER A 920 GLN A 927 1 8 HELIX 11 11 LEU A 964 SER A 972 1 9 HELIX 12 12 THR A 978 ARG A 982 5 5 HELIX 13 13 LEU A 1037 VAL A 1041 5 5 HELIX 14 14 SER A 1092 VAL A 1096 5 5 HELIX 15 15 LEU B 8 GLY B 10 5 3 HELIX 16 16 THR B 22 GLY B 35 1 14 HELIX 17 17 PRO B 37 ASP B 39 5 3 SHEET 1 A 3 VAL A 768 PHE A 769 0 SHEET 2 A 3 TYR A 842 ILE A 845 -1 O ARG A 843 N VAL A 768 SHEET 3 A 3 GLY A 778 LEU A 779 1 N GLY A 778 O ARG A 843 SHEET 1 B 3 LYS A 942 THR A 945 0 SHEET 2 B 3 GLY A 928 CYS A 936 -1 N SER A 932 O THR A 945 SHEET 3 B 3 ALA A 948 PHE A 949 -1 O PHE A 949 N GLY A 928 SHEET 1 C 4 LYS A 942 THR A 945 0 SHEET 2 C 4 GLY A 928 CYS A 936 -1 N SER A 932 O THR A 945 SHEET 3 C 4 SER A 994 LYS A1002 -1 O LYS A 997 N THR A 933 SHEET 4 C 4 GLU A 975 LEU A 977 -1 N LEU A 977 O SER A 994 SHEET 1 D 7 LEU A 952 LEU A 954 0 SHEET 2 D 7 VAL A1006 LEU A1011 1 O HIS A1010 N LEU A 952 SHEET 3 D 7 ALA A1101 THR A1107 -1 O TYR A1106 N LEU A1007 SHEET 4 D 7 ASN A1052 TYR A1060 -1 N SER A1057 O TYR A1102 SHEET 5 D 7 HIS A1067 ASN A1074 -1 O LYS A1073 N PHE A1054 SHEET 6 D 7 ARG A1079 ASP A1084 -1 O PHE A1083 N ALA A1070 SHEET 7 D 7 GLU A1087 ASP A1090 -1 O SER A1089 N LYS A1082 SHEET 1 E 2 LYS A 961 THR A 963 0 SHEET 2 E 2 SER A1027 ASP A1029 1 O ASP A1029 N CYS A 962 SHEET 1 F 2 PHE A 983 CYS A 985 0 SHEET 2 F 2 ALA A 990 ARG A 992 -1 O ARG A 992 N PHE A 983 SHEET 1 G 2 PHE A1014 TYR A1016 0 SHEET 2 G 2 LYS A1021 LYS A1023 -1 O GLN A1022 N SER A1015 SHEET 1 H 5 THR B 12 GLU B 16 0 SHEET 2 H 5 ARG B 2 LYS B 6 -1 N VAL B 5 O ILE B 13 SHEET 3 H 5 ALA B 66 LEU B 71 1 O LEU B 69 N LYS B 6 SHEET 4 H 5 GLN B 41 PHE B 45 -1 N ARG B 42 O LEU B 70 SHEET 5 H 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK ZN ZN A 1 SG CYS A 936 1555 1555 2.31 LINK ZN ZN A 1 SG CYS A 939 1555 1555 2.33 LINK ZN ZN A 1 SG CYS A 985 1555 1555 2.32 LINK ZN ZN A 1 SG CYS A 988 1555 1555 2.34 SITE 1 AC1 4 CYS A 936 CYS A 939 CYS A 985 CYS A 988 CRYST1 69.983 69.983 181.549 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014289 0.008250 0.000000 0.00000 SCALE2 0.000000 0.016500 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005508 0.00000