HEADER LYASE/LYASE INHIBITOR 31-MAY-10 3N9S TITLE CLASS II FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE FROM HELICOBACTER PYLORI TITLE 2 IN COMPLEX WITH N-(4-HYDROXYBUTYL)- GLYCOLOHYDROXAMIC ACID BIS- TITLE 3 PHOSPHATE, A COMPETITIVE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.1.2.13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 290847; SOURCE 4 STRAIN: 51; SOURCE 5 GENE: ALF_HELPY; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKK233-3 KEYWDS FBP ALDOLASE, CLASS II, INHIBITOR, LYASE, LYASE-LYASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.COINCON,S.SYGUSCH REVDAT 3 06-SEP-23 3N9S 1 REMARK SEQADV LINK REVDAT 2 08-DEC-10 3N9S 1 HEADER REVDAT 1 17-NOV-10 3N9S 0 JRNL AUTH R.DAHER,M.FONVIELLE,P.M.GEST,M.E.GUERIN,M.JACKSON,J.SYGUSCH, JRNL AUTH 2 M.THERISOD JRNL TITL RATIONAL DESIGN, SYNTHESIS, AND EVALUATION OF NEW SELECTIVE JRNL TITL 2 INHIBITORS OF MICROBIAL CLASS II (ZINC DEPENDENT) FRUCTOSE JRNL TITL 3 BIS-PHOSPHATE ALDOLASES. JRNL REF J.MED.CHEM. V. 53 7836 2010 JRNL REFN ISSN 0022-2623 JRNL PMID 20929256 JRNL DOI 10.1021/JM1009814 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_378 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 47476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.480 REMARK 3 FREE R VALUE TEST SET COUNT : 3553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.2850 - 5.4010 0.98 2057 168 0.1990 0.1970 REMARK 3 2 5.4010 - 4.2900 0.98 1949 159 0.1360 0.1780 REMARK 3 3 4.2900 - 3.7490 0.98 1926 155 0.1240 0.1760 REMARK 3 4 3.7490 - 3.4070 0.98 1904 156 0.1350 0.1680 REMARK 3 5 3.4070 - 3.1630 0.98 1894 155 0.1470 0.2060 REMARK 3 6 3.1630 - 2.9760 0.96 1851 151 0.1560 0.2060 REMARK 3 7 2.9760 - 2.8270 0.95 1826 146 0.1590 0.1880 REMARK 3 8 2.8270 - 2.7040 0.95 1817 148 0.1550 0.2420 REMARK 3 9 2.7040 - 2.6000 0.94 1804 148 0.1590 0.2130 REMARK 3 10 2.6000 - 2.5110 0.94 1796 143 0.1700 0.2290 REMARK 3 11 2.5110 - 2.4320 0.93 1767 146 0.1600 0.2250 REMARK 3 12 2.4320 - 2.3630 0.93 1810 145 0.1570 0.2170 REMARK 3 13 2.3630 - 2.3000 0.93 1766 141 0.1600 0.2240 REMARK 3 14 2.3000 - 2.2440 0.93 1766 143 0.1650 0.2650 REMARK 3 15 2.2440 - 2.1930 0.93 1752 142 0.1690 0.2440 REMARK 3 16 2.1930 - 2.1470 0.93 1777 141 0.1810 0.2370 REMARK 3 17 2.1470 - 2.1040 0.93 1781 146 0.1920 0.2390 REMARK 3 18 2.1040 - 2.0640 0.92 1734 138 0.1990 0.2400 REMARK 3 19 2.0640 - 2.0270 0.91 1707 139 0.2010 0.2710 REMARK 3 20 2.0270 - 1.9930 0.89 1695 132 0.2070 0.2550 REMARK 3 21 1.9930 - 1.9610 0.86 1615 127 0.2140 0.2800 REMARK 3 22 1.9610 - 1.9310 0.83 1602 131 0.2240 0.2770 REMARK 3 23 1.9310 - 1.9020 0.79 1471 126 0.2330 0.2930 REMARK 3 24 1.9020 - 1.8750 0.76 1427 107 0.2370 0.2830 REMARK 3 25 1.8750 - 1.8500 0.75 1429 120 0.2480 0.2750 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.53 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 53.28 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.28100 REMARK 3 B22 (A**2) : 9.64400 REMARK 3 B33 (A**2) : -2.36300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4769 REMARK 3 ANGLE : 0.960 6413 REMARK 3 CHIRALITY : 0.057 710 REMARK 3 PLANARITY : 0.005 831 REMARK 3 DIHEDRAL : 15.836 1799 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3N9S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0809 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50710 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 71.671 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16100 REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.01300 REMARK 200 R SYM FOR SHELL (I) : 1.28400 REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENRY 3C52 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 1000, 12% PEG 8000, 0.2 M REMARK 280 CALCIUM ACETATE,50 MM TRIS/HOAC, PH 8.5, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.47950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.99250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.71800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.99250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.47950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.71800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMERIC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 140 REMARK 465 ILE B 141 REMARK 465 GLU B 142 REMARK 465 ASP B 143 REMARK 465 ASN B 144 REMARK 465 ILE B 145 REMARK 465 SER B 146 REMARK 465 VAL B 147 REMARK 465 ASP B 148 REMARK 465 GLU B 149 REMARK 465 LYS B 150 REMARK 465 ASP B 151 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 144 11.90 82.92 REMARK 500 VAL A 153 -55.43 -120.02 REMARK 500 PHE A 183 67.24 -118.74 REMARK 500 ASP A 255 -55.86 -139.96 REMARK 500 PHE B 183 69.11 -119.90 REMARK 500 ILE B 215 72.91 39.04 REMARK 500 ASP B 255 -61.82 -144.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 311 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 82 OD1 REMARK 620 2 GLU A 132 OE2 139.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 309 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 HIS A 180 NE2 99.5 REMARK 620 3 HIS A 210 ND1 92.2 127.2 REMARK 620 4 TD4 A 308 O01 96.6 122.4 106.9 REMARK 620 5 TD4 A 308 O13 170.5 81.5 94.7 75.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 310 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 104 OD2 REMARK 620 2 ASP A 104 OD1 50.4 REMARK 620 3 SER A 106 OG 127.4 77.3 REMARK 620 4 GLU A 134 OE1 77.2 71.4 93.3 REMARK 620 5 HOH A 320 O 85.6 86.8 86.1 157.8 REMARK 620 6 HOH A 449 O 83.6 133.9 148.7 98.5 93.3 REMARK 620 7 HOH A 638 O 155.9 139.8 70.6 86.7 113.8 81.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 310 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 82 OD1 REMARK 620 2 GLU B 132 OE2 141.4 REMARK 620 3 GLU B 132 OE1 171.5 41.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 308 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 83 NE2 REMARK 620 2 HIS B 180 NE2 104.5 REMARK 620 3 HIS B 210 ND1 96.0 131.8 REMARK 620 4 TD4 B 311 O01 92.6 120.8 100.9 REMARK 620 5 TD4 B 311 O13 164.6 77.8 93.4 73.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 309 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 104 OD2 REMARK 620 2 ASP B 104 OD1 49.9 REMARK 620 3 SER B 106 OG 130.0 80.4 REMARK 620 4 GLU B 134 OE1 84.4 76.0 88.6 REMARK 620 5 HOH B 349 O 87.0 82.2 80.6 156.9 REMARK 620 6 HOH B 351 O 140.8 154.9 82.7 122.1 76.9 REMARK 620 7 HOH B 436 O 86.7 135.9 143.2 94.4 106.4 64.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TD4 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TD4 B 311 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C4U RELATED DB: PDB REMARK 900 RELATED ID: 3C52 RELATED DB: PDB REMARK 900 RELATED ID: 3C56 RELATED DB: PDB REMARK 900 RELATED ID: 3N9R RELATED DB: PDB DBREF 3N9S A 1 307 UNP D0IR47 D0IR47_HELP1 1 307 DBREF 3N9S B 1 307 UNP D0IR47 D0IR47_HELP1 1 307 SEQADV 3N9S ASN A 218 UNP D0IR47 ASP 218 CONFLICT SEQADV 3N9S ASN B 218 UNP D0IR47 ASP 218 CONFLICT SEQRES 1 A 307 MET LEU VAL LYS GLY ASN GLU ILE LEU LEU LYS ALA HIS SEQRES 2 A 307 LYS GLU GLY TYR GLY VAL GLY ALA PHE ASN PHE VAL ASN SEQRES 3 A 307 PHE GLU MET LEU ASN ALA ILE PHE GLU ALA GLY ASN GLU SEQRES 4 A 307 GLU ASN SER PRO LEU PHE ILE GLN ALA SER GLU GLY ALA SEQRES 5 A 307 ILE LYS TYR MET GLY ILE ASP MET ALA VAL GLY MET VAL SEQRES 6 A 307 LYS ILE MET CYS GLU ARG TYR PRO HIS ILE PRO VAL ALA SEQRES 7 A 307 LEU HIS LEU ASP HIS GLY THR THR PHE GLU SER CYS GLU SEQRES 8 A 307 LYS ALA VAL LYS ALA GLY PHE THR SER VAL MET ILE ASP SEQRES 9 A 307 ALA SER HIS HIS ALA PHE GLU GLU ASN LEU GLU LEU THR SEQRES 10 A 307 SER LYS VAL VAL LYS MET ALA HIS ASN ALA GLY VAL SER SEQRES 11 A 307 VAL GLU ALA GLU LEU GLY ARG LEU MET GLY ILE GLU ASP SEQRES 12 A 307 ASN ILE SER VAL ASP GLU LYS ASP ALA VAL LEU VAL ASN SEQRES 13 A 307 PRO LYS GLU ALA GLU GLN PHE VAL LYS GLU SER GLN VAL SEQRES 14 A 307 ASP TYR LEU ALA PRO ALA ILE GLY THR SER HIS GLY ALA SEQRES 15 A 307 PHE LYS PHE LYS GLY GLU PRO LYS LEU ASP PHE GLU ARG SEQRES 16 A 307 LEU GLN GLU VAL LYS ARG LEU THR ASN ILE PRO LEU VAL SEQRES 17 A 307 LEU HIS GLY ALA SER ALA ILE PRO ASP ASN VAL ARG LYS SEQRES 18 A 307 SER TYR LEU ASP ALA GLY GLY ASP LEU LYS GLY SER LYS SEQRES 19 A 307 GLY VAL PRO PHE GLU PHE LEU GLN GLU SER VAL LYS GLY SEQRES 20 A 307 GLY ILE ASN LYS VAL ASN THR ASP THR ASP LEU ARG ILE SEQRES 21 A 307 ALA PHE ILE ALA GLU VAL ARG LYS VAL ALA ASN GLU ASP SEQRES 22 A 307 LYS SER GLN PHE ASP LEU ARG LYS PHE PHE SER PRO ALA SEQRES 23 A 307 GLN LEU ALA LEU LYS ASN VAL VAL LYS GLU ARG MET LYS SEQRES 24 A 307 LEU LEU GLY SER ALA ASN LYS ILE SEQRES 1 B 307 MET LEU VAL LYS GLY ASN GLU ILE LEU LEU LYS ALA HIS SEQRES 2 B 307 LYS GLU GLY TYR GLY VAL GLY ALA PHE ASN PHE VAL ASN SEQRES 3 B 307 PHE GLU MET LEU ASN ALA ILE PHE GLU ALA GLY ASN GLU SEQRES 4 B 307 GLU ASN SER PRO LEU PHE ILE GLN ALA SER GLU GLY ALA SEQRES 5 B 307 ILE LYS TYR MET GLY ILE ASP MET ALA VAL GLY MET VAL SEQRES 6 B 307 LYS ILE MET CYS GLU ARG TYR PRO HIS ILE PRO VAL ALA SEQRES 7 B 307 LEU HIS LEU ASP HIS GLY THR THR PHE GLU SER CYS GLU SEQRES 8 B 307 LYS ALA VAL LYS ALA GLY PHE THR SER VAL MET ILE ASP SEQRES 9 B 307 ALA SER HIS HIS ALA PHE GLU GLU ASN LEU GLU LEU THR SEQRES 10 B 307 SER LYS VAL VAL LYS MET ALA HIS ASN ALA GLY VAL SER SEQRES 11 B 307 VAL GLU ALA GLU LEU GLY ARG LEU MET GLY ILE GLU ASP SEQRES 12 B 307 ASN ILE SER VAL ASP GLU LYS ASP ALA VAL LEU VAL ASN SEQRES 13 B 307 PRO LYS GLU ALA GLU GLN PHE VAL LYS GLU SER GLN VAL SEQRES 14 B 307 ASP TYR LEU ALA PRO ALA ILE GLY THR SER HIS GLY ALA SEQRES 15 B 307 PHE LYS PHE LYS GLY GLU PRO LYS LEU ASP PHE GLU ARG SEQRES 16 B 307 LEU GLN GLU VAL LYS ARG LEU THR ASN ILE PRO LEU VAL SEQRES 17 B 307 LEU HIS GLY ALA SER ALA ILE PRO ASP ASN VAL ARG LYS SEQRES 18 B 307 SER TYR LEU ASP ALA GLY GLY ASP LEU LYS GLY SER LYS SEQRES 19 B 307 GLY VAL PRO PHE GLU PHE LEU GLN GLU SER VAL LYS GLY SEQRES 20 B 307 GLY ILE ASN LYS VAL ASN THR ASP THR ASP LEU ARG ILE SEQRES 21 B 307 ALA PHE ILE ALA GLU VAL ARG LYS VAL ALA ASN GLU ASP SEQRES 22 B 307 LYS SER GLN PHE ASP LEU ARG LYS PHE PHE SER PRO ALA SEQRES 23 B 307 GLN LEU ALA LEU LYS ASN VAL VAL LYS GLU ARG MET LYS SEQRES 24 B 307 LEU LEU GLY SER ALA ASN LYS ILE HET TD4 A 308 19 HET ZN A 309 1 HET CA A 310 1 HET NA A 311 1 HET ZN B 308 1 HET CA B 309 1 HET NA B 310 1 HET TD4 B 311 19 HETNAM TD4 4-{HYDROXY[(PHOSPHONOOXY)ACETYL]AMINO}BUTYL DIHYDROGEN HETNAM 2 TD4 PHOSPHATE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM NA SODIUM ION FORMUL 3 TD4 2(C6 H15 N O10 P2) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 CA 2(CA 2+) FORMUL 6 NA 2(NA 1+) FORMUL 11 HOH *990(H2 O) HELIX 1 1 LYS A 4 GLY A 16 1 13 HELIX 2 2 ASN A 26 ASN A 41 1 16 HELIX 3 3 GLU A 50 GLY A 57 1 8 HELIX 4 4 GLY A 57 TYR A 72 1 16 HELIX 5 5 THR A 86 GLY A 97 1 12 HELIX 6 6 ALA A 109 ALA A 127 1 19 HELIX 7 7 ASN A 156 GLN A 168 1 13 HELIX 8 8 ASP A 192 ASN A 204 1 13 HELIX 9 9 PRO A 216 ALA A 226 1 11 HELIX 10 10 PRO A 237 GLY A 248 1 12 HELIX 11 11 ASP A 255 ASP A 273 1 19 HELIX 12 12 ASP A 278 LEU A 301 1 24 HELIX 13 13 LYS B 4 GLY B 16 1 13 HELIX 14 14 ASN B 26 ASN B 41 1 16 HELIX 15 15 GLU B 50 GLY B 57 1 8 HELIX 16 16 GLY B 57 TYR B 72 1 16 HELIX 17 17 THR B 86 GLY B 97 1 12 HELIX 18 18 ALA B 109 ALA B 127 1 19 HELIX 19 19 ASN B 156 GLN B 168 1 13 HELIX 20 20 ASP B 192 ASN B 204 1 13 HELIX 21 21 PRO B 216 ALA B 226 1 11 HELIX 22 22 PRO B 237 GLY B 248 1 12 HELIX 23 23 ASP B 255 ASP B 273 1 19 HELIX 24 24 ASP B 278 LEU B 301 1 24 SHEET 1 A 9 VAL A 19 ASN A 23 0 SHEET 2 A 9 LEU A 44 SER A 49 1 O GLN A 47 N PHE A 22 SHEET 3 A 9 VAL A 77 GLY A 84 1 O ALA A 78 N ILE A 46 SHEET 4 A 9 SER A 100 ILE A 103 1 O SER A 100 N LEU A 81 SHEET 5 A 9 SER A 130 LEU A 135 1 O GLU A 132 N ILE A 103 SHEET 6 A 9 TYR A 171 PRO A 174 1 O ALA A 173 N ALA A 133 SHEET 7 A 9 LEU A 207 LEU A 209 1 O VAL A 208 N LEU A 172 SHEET 8 A 9 ILE A 249 THR A 254 1 O ASN A 250 N LEU A 207 SHEET 9 A 9 VAL A 19 ASN A 23 1 N ALA A 21 O THR A 254 SHEET 1 B 9 VAL B 19 ASN B 23 0 SHEET 2 B 9 LEU B 44 SER B 49 1 O GLN B 47 N PHE B 22 SHEET 3 B 9 VAL B 77 GLY B 84 1 O HIS B 80 N ILE B 46 SHEET 4 B 9 SER B 100 ILE B 103 1 O MET B 102 N LEU B 81 SHEET 5 B 9 SER B 130 LEU B 135 1 O GLU B 132 N ILE B 103 SHEET 6 B 9 TYR B 171 PRO B 174 1 O ALA B 173 N ALA B 133 SHEET 7 B 9 LEU B 207 LEU B 209 1 O VAL B 208 N LEU B 172 SHEET 8 B 9 ILE B 249 THR B 254 1 O ASN B 250 N LEU B 207 SHEET 9 B 9 VAL B 19 ASN B 23 1 N ALA B 21 O THR B 254 LINK OD1 ASP A 82 NA NA A 311 1555 1555 2.80 LINK NE2 HIS A 83 ZN ZN A 309 1555 1555 2.14 LINK OD2 ASP A 104 CA CA A 310 1555 1555 2.50 LINK OD1 ASP A 104 CA CA A 310 1555 1555 2.65 LINK OG SER A 106 CA CA A 310 1555 1555 2.60 LINK OE2 GLU A 132 NA NA A 311 1555 1555 3.05 LINK OE1 GLU A 134 CA CA A 310 1555 1555 2.61 LINK NE2 HIS A 180 ZN ZN A 309 1555 1555 2.08 LINK ND1 HIS A 210 ZN ZN A 309 1555 1555 2.09 LINK O01 TD4 A 308 ZN ZN A 309 1555 1555 1.92 LINK O13 TD4 A 308 ZN ZN A 309 1555 1555 2.55 LINK CA CA A 310 O HOH A 320 1555 1555 2.56 LINK CA CA A 310 O HOH A 449 1555 1555 2.66 LINK CA CA A 310 O HOH A 638 1555 1555 2.73 LINK OD1 ASP B 82 NA NA B 310 1555 1555 2.84 LINK NE2 HIS B 83 ZN ZN B 308 1555 1555 2.13 LINK OD2 ASP B 104 CA CA B 309 1555 1555 2.56 LINK OD1 ASP B 104 CA CA B 309 1555 1555 2.64 LINK OG SER B 106 CA CA B 309 1555 1555 2.66 LINK OE2 GLU B 132 NA NA B 310 1555 1555 3.07 LINK OE1 GLU B 132 NA NA B 310 1555 1555 3.16 LINK OE1 GLU B 134 CA CA B 309 1555 1555 2.46 LINK NE2 HIS B 180 ZN ZN B 308 1555 1555 1.98 LINK ND1 HIS B 210 ZN ZN B 308 1555 1555 2.10 LINK ZN ZN B 308 O01 TD4 B 311 1555 1555 2.04 LINK ZN ZN B 308 O13 TD4 B 311 1555 1555 2.58 LINK CA CA B 309 O HOH B 349 1555 1555 2.51 LINK CA CA B 309 O HOH B 351 1555 1555 2.79 LINK CA CA B 309 O HOH B 436 1555 1555 2.76 SITE 1 AC1 24 ASN A 23 SER A 49 ASP A 82 HIS A 83 SITE 2 AC1 24 HIS A 180 GLY A 181 LYS A 184 HIS A 210 SITE 3 AC1 24 GLY A 211 ALA A 212 SER A 213 ASN A 253 SITE 4 AC1 24 ASP A 255 THR A 256 ZN A 309 HOH A 345 SITE 5 AC1 24 HOH A 399 HOH A 450 HOH A 464 HOH A 587 SITE 6 AC1 24 HOH A 611 HOH A 644 HOH A 849 ARG B 280 SITE 1 AC2 4 HIS A 83 HIS A 180 HIS A 210 TD4 A 308 SITE 1 AC3 6 ASP A 104 SER A 106 GLU A 134 HOH A 320 SITE 2 AC3 6 HOH A 449 HOH A 638 SITE 1 AC4 7 HIS A 80 ASP A 82 MET A 102 GLU A 132 SITE 2 AC4 7 HIS A 210 LYS A 251 ASN A 253 SITE 1 AC5 4 HIS B 83 HIS B 180 HIS B 210 TD4 B 311 SITE 1 AC6 6 ASP B 104 SER B 106 GLU B 134 HOH B 349 SITE 2 AC6 6 HOH B 351 HOH B 436 SITE 1 AC7 7 HIS B 80 ASP B 82 MET B 102 GLU B 132 SITE 2 AC7 7 HIS B 210 LYS B 251 ASN B 253 SITE 1 AC8 24 ARG A 280 ASN B 23 SER B 49 ASP B 82 SITE 2 AC8 24 HIS B 83 HIS B 180 GLY B 181 LYS B 184 SITE 3 AC8 24 HIS B 210 GLY B 211 ALA B 212 SER B 213 SITE 4 AC8 24 ASN B 253 ASP B 255 THR B 256 ZN B 308 SITE 5 AC8 24 HOH B 325 HOH B 347 HOH B 389 HOH B 416 SITE 6 AC8 24 HOH B 450 HOH B 513 HOH B 991 HOH B 992 CRYST1 50.959 83.436 139.985 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019624 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007144 0.00000