data_3NCK # _entry.id 3NCK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NCK pdb_00003nck 10.2210/pdb3nck/pdb RCSB RCSB059659 ? ? WWPDB D_1000059659 ? ? # _pdbx_database_status.entry_id 3NCK _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-06-04 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tremblay, L.W.' 1 'Blanchard, J.S.' 2 # _citation.id primary _citation.title 'BlaC-E166A covalently bound with cephalosporins and penicillins' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tremblay, L.W.' 1 ? primary 'Blanchard, J.S.' 2 ? # _cell.length_a 48.671 _cell.length_b 67.822 _cell.length_c 76.643 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3NCK _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3NCK _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Beta-lactamase 28214.689 1 3.5.2.6 E182A ? ? 2 non-polymer syn '(2R,4S)-2-[(1R)-1-{[(2-ethoxynaphthalen-1-yl)carbonyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' 416.491 1 ? ? ? ? 3 water nat water 18.015 29 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Penicillinase # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQ QHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEAPELNRDPPGDERDTTTPHAI ALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRA GGGYDAEPREALLAEAATCVAGVLA ; _entity_poly.pdbx_seq_one_letter_code_can ;DLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQ QHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEAPELNRDPPGDERDTTTPHAI ALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRA GGGYDAEPREALLAEAATCVAGVLA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 LEU n 1 3 ALA n 1 4 ASP n 1 5 ARG n 1 6 PHE n 1 7 ALA n 1 8 GLU n 1 9 LEU n 1 10 GLU n 1 11 ARG n 1 12 ARG n 1 13 TYR n 1 14 ASP n 1 15 ALA n 1 16 ARG n 1 17 LEU n 1 18 GLY n 1 19 VAL n 1 20 TYR n 1 21 VAL n 1 22 PRO n 1 23 ALA n 1 24 THR n 1 25 GLY n 1 26 THR n 1 27 THR n 1 28 ALA n 1 29 ALA n 1 30 ILE n 1 31 GLU n 1 32 TYR n 1 33 ARG n 1 34 ALA n 1 35 ASP n 1 36 GLU n 1 37 ARG n 1 38 PHE n 1 39 ALA n 1 40 PHE n 1 41 CYS n 1 42 SER n 1 43 THR n 1 44 PHE n 1 45 LYS n 1 46 ALA n 1 47 PRO n 1 48 LEU n 1 49 VAL n 1 50 ALA n 1 51 ALA n 1 52 VAL n 1 53 LEU n 1 54 HIS n 1 55 GLN n 1 56 ASN n 1 57 PRO n 1 58 LEU n 1 59 THR n 1 60 HIS n 1 61 LEU n 1 62 ASP n 1 63 LYS n 1 64 LEU n 1 65 ILE n 1 66 THR n 1 67 TYR n 1 68 THR n 1 69 SER n 1 70 ASP n 1 71 ASP n 1 72 ILE n 1 73 ARG n 1 74 SER n 1 75 ILE n 1 76 SER n 1 77 PRO n 1 78 VAL n 1 79 ALA n 1 80 GLN n 1 81 GLN n 1 82 HIS n 1 83 VAL n 1 84 GLN n 1 85 THR n 1 86 GLY n 1 87 MET n 1 88 THR n 1 89 ILE n 1 90 GLY n 1 91 GLN n 1 92 LEU n 1 93 CYS n 1 94 ASP n 1 95 ALA n 1 96 ALA n 1 97 ILE n 1 98 ARG n 1 99 TYR n 1 100 SER n 1 101 ASP n 1 102 GLY n 1 103 THR n 1 104 ALA n 1 105 ALA n 1 106 ASN n 1 107 LEU n 1 108 LEU n 1 109 LEU n 1 110 ALA n 1 111 ASP n 1 112 LEU n 1 113 GLY n 1 114 GLY n 1 115 PRO n 1 116 GLY n 1 117 GLY n 1 118 GLY n 1 119 THR n 1 120 ALA n 1 121 ALA n 1 122 PHE n 1 123 THR n 1 124 GLY n 1 125 TYR n 1 126 LEU n 1 127 ARG n 1 128 SER n 1 129 LEU n 1 130 GLY n 1 131 ASP n 1 132 THR n 1 133 VAL n 1 134 SER n 1 135 ARG n 1 136 LEU n 1 137 ASP n 1 138 ALA n 1 139 GLU n 1 140 ALA n 1 141 PRO n 1 142 GLU n 1 143 LEU n 1 144 ASN n 1 145 ARG n 1 146 ASP n 1 147 PRO n 1 148 PRO n 1 149 GLY n 1 150 ASP n 1 151 GLU n 1 152 ARG n 1 153 ASP n 1 154 THR n 1 155 THR n 1 156 THR n 1 157 PRO n 1 158 HIS n 1 159 ALA n 1 160 ILE n 1 161 ALA n 1 162 LEU n 1 163 VAL n 1 164 LEU n 1 165 GLN n 1 166 GLN n 1 167 LEU n 1 168 VAL n 1 169 LEU n 1 170 GLY n 1 171 ASN n 1 172 ALA n 1 173 LEU n 1 174 PRO n 1 175 PRO n 1 176 ASP n 1 177 LYS n 1 178 ARG n 1 179 ALA n 1 180 LEU n 1 181 LEU n 1 182 THR n 1 183 ASP n 1 184 TRP n 1 185 MET n 1 186 ALA n 1 187 ARG n 1 188 ASN n 1 189 THR n 1 190 THR n 1 191 GLY n 1 192 ALA n 1 193 LYS n 1 194 ARG n 1 195 ILE n 1 196 ARG n 1 197 ALA n 1 198 GLY n 1 199 PHE n 1 200 PRO n 1 201 ALA n 1 202 ASP n 1 203 TRP n 1 204 LYS n 1 205 VAL n 1 206 ILE n 1 207 ASP n 1 208 LYS n 1 209 THR n 1 210 GLY n 1 211 THR n 1 212 GLY n 1 213 ASP n 1 214 TYR n 1 215 GLY n 1 216 ARG n 1 217 ALA n 1 218 ASN n 1 219 ASP n 1 220 ILE n 1 221 ALA n 1 222 VAL n 1 223 VAL n 1 224 TRP n 1 225 SER n 1 226 PRO n 1 227 THR n 1 228 GLY n 1 229 VAL n 1 230 PRO n 1 231 TYR n 1 232 VAL n 1 233 VAL n 1 234 ALA n 1 235 VAL n 1 236 MET n 1 237 SER n 1 238 ASP n 1 239 ARG n 1 240 ALA n 1 241 GLY n 1 242 GLY n 1 243 GLY n 1 244 TYR n 1 245 ASP n 1 246 ALA n 1 247 GLU n 1 248 PRO n 1 249 ARG n 1 250 GLU n 1 251 ALA n 1 252 LEU n 1 253 LEU n 1 254 ALA n 1 255 GLU n 1 256 ALA n 1 257 ALA n 1 258 THR n 1 259 CYS n 1 260 VAL n 1 261 ALA n 1 262 GLY n 1 263 VAL n 1 264 LEU n 1 265 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'blaA, blaC, MT2128, MTCY49.07c, Rv2068c' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1773 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain Rosetta2 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector plasmid _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BLAC_MYCTU _struct_ref.pdbx_db_accession P0C5C1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQ QHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEEPELNRDPPGDERDTTTPHAI ALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRA GGGYDAEPREALLAEAATCVAGVLA ; _struct_ref.pdbx_align_begin 43 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3NCK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 265 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0C5C1 _struct_ref_seq.db_align_beg 43 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 307 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 43 _struct_ref_seq.pdbx_auth_seq_align_end 307 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3NCK _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 140 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P0C5C1 _struct_ref_seq_dif.db_mon_id GLU _struct_ref_seq_dif.pdbx_seq_db_seq_num 182 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 182 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NFF non-polymer . '(2R,4S)-2-[(1R)-1-{[(2-ethoxynaphthalen-1-yl)carbonyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' 'Nafcillin, bound form' 'C21 H24 N2 O5 S' 416.491 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3NCK _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '0.1 M HEPES, 2 M NH4H2PO4, pH 7.5, Vapor diffusion, Sitting drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id _diffrn.pdbx_serial_crystal_experiment 1 100 ? 1 ? 2 100 ? 1 ? # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 210' 2009 ? 2 CCD 'ADSC QUANTUM 210' 2009 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 'SINGLE WAVELENGTH' 'Si(111) Channel Cut' 1 ? x-ray 2 'SINGLE WAVELENGTH' 'Si(111) Channel Cut' 1 ? x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'NSLS BEAMLINE X12C' 1.000 ? NSLS X12C 2 SYNCHROTRON 'NSLS BEAMLINE X29A' 1.000 ? NSLS X29A # _reflns.entry_id 3NCK _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.8 _reflns.d_resolution_low 50.79 _reflns.number_all ? _reflns.number_obs 6626 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.152 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.874 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 93.89 _reflns_shell.Rmerge_I_obs 0.606 _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 5.9 _reflns_shell.number_unique_all 327 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.entry_id 3NCK _refine.ls_d_res_high 2.800 _refine.ls_d_res_low 50 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.400 _refine.ls_number_reflns_obs 6599 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.188 _refine.ls_R_factor_R_work 0.185 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.265 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 309 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 34.813 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.160 _refine.aniso_B[2][2] -1.260 _refine.aniso_B[3][3] 0.100 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] -0.000 _refine.correlation_coeff_Fo_to_Fc 0.938 _refine.correlation_coeff_Fo_to_Fc_free 0.872 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.424 _refine.overall_SU_ML 0.314 _refine.overall_SU_B 15.766 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB entry 3DWZ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 68.40 _refine.B_iso_min 13.94 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1,2 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1914 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 29 _refine_hist.number_atoms_total 1972 _refine_hist.d_res_high 2.800 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1994 0.012 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2723 1.391 1.979 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 256 6.200 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 83 38.051 22.771 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 294 15.522 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19 25.597 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 314 0.083 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1528 0.005 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1279 0.658 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2044 1.244 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 715 1.554 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 679 2.760 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.874 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 93.890 _refine_ls_shell.number_reflns_R_work 441 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.229 _refine_ls_shell.R_factor_R_free 0.399 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 20 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 461 _refine_ls_shell.number_reflns_obs 327 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3NCK _struct.title 'Crystal Structure of BlaC-E166A covalently bound with Nafcillin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NCK _struct_keywords.text 'penicillin binding protein, beta-lactam covalent adduct, Hydrolase-Antibiotic complex' _struct_keywords.pdbx_keywords Hydrolase/Antibiotic # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 1 ? ASP A 14 ? ASP A 43 ASP A 56 1 ? 14 HELX_P HELX_P2 2 CYS A 41 ? THR A 43 ? CYS A 83 THR A 85 5 ? 3 HELX_P HELX_P3 3 PHE A 44 ? ASN A 56 ? PHE A 86 ASN A 98 1 ? 13 HELX_P HELX_P4 4 PRO A 57 ? ASP A 62 ? PRO A 99 ASP A 104 5 ? 6 HELX_P HELX_P5 5 THR A 68 ? ILE A 72 ? THR A 110 ILE A 114 5 ? 5 HELX_P HELX_P6 6 SER A 76 ? GLN A 81 ? SER A 118 GLN A 123 1 ? 6 HELX_P HELX_P7 7 ILE A 89 ? SER A 100 ? ILE A 131 SER A 142 1 ? 12 HELX_P HELX_P8 8 ASP A 101 ? GLY A 113 ? ASP A 143 GLY A 155 1 ? 13 HELX_P HELX_P9 9 PRO A 115 ? GLY A 117 ? PRO A 157 GLY A 159 5 ? 3 HELX_P HELX_P10 10 GLY A 118 ? LEU A 129 ? GLY A 160 LEU A 171 1 ? 12 HELX_P HELX_P11 11 THR A 156 ? LEU A 169 ? THR A 198 LEU A 211 1 ? 14 HELX_P HELX_P12 12 PRO A 174 ? ARG A 187 ? PRO A 216 ARG A 229 1 ? 14 HELX_P HELX_P13 13 ARG A 194 ? PHE A 199 ? ARG A 236 PHE A 241 5 ? 6 HELX_P HELX_P14 14 ARG A 239 ? GLY A 243 ? ARG A 281 GLY A 285 5 ? 5 HELX_P HELX_P15 15 ARG A 249 ? ALA A 265 ? ARG A 291 ALA A 307 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag none _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id NFF _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id SER _struct_conn.ptnr2_label_seq_id 42 _struct_conn.ptnr2_label_atom_id OG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id NFF _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SER _struct_conn.ptnr2_auth_seq_id 84 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.453 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 30 ? TYR A 32 ? ILE A 72 TYR A 74 A 2 ARG A 16 ? VAL A 21 ? ARG A 58 VAL A 63 A 3 PRO A 230 ? ASP A 238 ? PRO A 272 ASP A 280 A 4 ALA A 217 ? TRP A 224 ? ALA A 259 TRP A 266 A 5 LYS A 204 ? THR A 211 ? LYS A 246 THR A 253 B 1 PHE A 38 ? ALA A 39 ? PHE A 80 ALA A 81 B 2 THR A 154 ? THR A 155 ? THR A 196 THR A 197 C 1 LEU A 64 ? ILE A 65 ? LEU A 106 ILE A 107 C 2 MET A 87 ? THR A 88 ? MET A 129 THR A 130 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 32 ? O TYR A 74 N VAL A 19 ? N VAL A 61 A 2 3 N ARG A 16 ? N ARG A 58 O ASP A 238 ? O ASP A 280 A 3 4 O TYR A 231 ? O TYR A 273 N VAL A 223 ? N VAL A 265 A 4 5 O ASN A 218 ? O ASN A 260 N GLY A 210 ? N GLY A 252 B 1 2 N PHE A 38 ? N PHE A 80 O THR A 155 ? O THR A 197 C 1 2 N ILE A 65 ? N ILE A 107 O MET A 87 ? O MET A 129 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NFF _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE NFF A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 SER A 42 ? SER A 84 . ? 1_555 ? 2 AC1 10 LYS A 45 ? LYS A 87 . ? 1_555 ? 3 AC1 10 SER A 100 ? SER A 142 . ? 1_555 ? 4 AC1 10 GLU A 151 ? GLU A 193 . ? 4_545 ? 5 AC1 10 LYS A 208 ? LYS A 250 . ? 1_555 ? 6 AC1 10 THR A 209 ? THR A 251 . ? 1_555 ? 7 AC1 10 GLY A 210 ? GLY A 252 . ? 1_555 ? 8 AC1 10 THR A 211 ? THR A 253 . ? 1_555 ? 9 AC1 10 GLY A 212 ? GLY A 254 . ? 1_555 ? 10 AC1 10 ASP A 213 ? ASP A 255 . ? 1_555 ? # _atom_sites.entry_id 3NCK _atom_sites.fract_transf_matrix[1][1] 0.020546 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014744 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013048 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 43 43 ASP ASP A . n A 1 2 LEU 2 44 44 LEU LEU A . n A 1 3 ALA 3 45 45 ALA ALA A . n A 1 4 ASP 4 46 46 ASP ASP A . n A 1 5 ARG 5 47 47 ARG ARG A . n A 1 6 PHE 6 48 48 PHE PHE A . n A 1 7 ALA 7 49 49 ALA ALA A . n A 1 8 GLU 8 50 50 GLU GLU A . n A 1 9 LEU 9 51 51 LEU LEU A . n A 1 10 GLU 10 52 52 GLU GLU A . n A 1 11 ARG 11 53 53 ARG ARG A . n A 1 12 ARG 12 54 54 ARG ARG A . n A 1 13 TYR 13 55 55 TYR TYR A . n A 1 14 ASP 14 56 56 ASP ASP A . n A 1 15 ALA 15 57 57 ALA ALA A . n A 1 16 ARG 16 58 58 ARG ARG A . n A 1 17 LEU 17 59 59 LEU LEU A . n A 1 18 GLY 18 60 60 GLY GLY A . n A 1 19 VAL 19 61 61 VAL VAL A . n A 1 20 TYR 20 62 62 TYR TYR A . n A 1 21 VAL 21 63 63 VAL VAL A . n A 1 22 PRO 22 64 64 PRO PRO A . n A 1 23 ALA 23 65 65 ALA ALA A . n A 1 24 THR 24 66 66 THR THR A . n A 1 25 GLY 25 67 67 GLY GLY A . n A 1 26 THR 26 68 68 THR THR A . n A 1 27 THR 27 69 69 THR THR A . n A 1 28 ALA 28 70 70 ALA ALA A . n A 1 29 ALA 29 71 71 ALA ALA A . n A 1 30 ILE 30 72 72 ILE ILE A . n A 1 31 GLU 31 73 73 GLU GLU A . n A 1 32 TYR 32 74 74 TYR TYR A . n A 1 33 ARG 33 75 75 ARG ARG A . n A 1 34 ALA 34 76 76 ALA ALA A . n A 1 35 ASP 35 77 77 ASP ASP A . n A 1 36 GLU 36 78 78 GLU GLU A . n A 1 37 ARG 37 79 79 ARG ARG A . n A 1 38 PHE 38 80 80 PHE PHE A . n A 1 39 ALA 39 81 81 ALA ALA A . n A 1 40 PHE 40 82 82 PHE PHE A . n A 1 41 CYS 41 83 83 CYS CYS A . n A 1 42 SER 42 84 84 SER SER A . n A 1 43 THR 43 85 85 THR THR A . n A 1 44 PHE 44 86 86 PHE PHE A . n A 1 45 LYS 45 87 87 LYS LYS A . n A 1 46 ALA 46 88 88 ALA ALA A . n A 1 47 PRO 47 89 89 PRO PRO A . n A 1 48 LEU 48 90 90 LEU LEU A . n A 1 49 VAL 49 91 91 VAL VAL A . n A 1 50 ALA 50 92 92 ALA ALA A . n A 1 51 ALA 51 93 93 ALA ALA A . n A 1 52 VAL 52 94 94 VAL VAL A . n A 1 53 LEU 53 95 95 LEU LEU A . n A 1 54 HIS 54 96 96 HIS HIS A . n A 1 55 GLN 55 97 97 GLN GLN A . n A 1 56 ASN 56 98 98 ASN ASN A . n A 1 57 PRO 57 99 99 PRO PRO A . n A 1 58 LEU 58 100 100 LEU LEU A . n A 1 59 THR 59 101 101 THR THR A . n A 1 60 HIS 60 102 102 HIS HIS A . n A 1 61 LEU 61 103 103 LEU LEU A . n A 1 62 ASP 62 104 104 ASP ASP A . n A 1 63 LYS 63 105 105 LYS LYS A . n A 1 64 LEU 64 106 106 LEU LEU A . n A 1 65 ILE 65 107 107 ILE ILE A . n A 1 66 THR 66 108 108 THR THR A . n A 1 67 TYR 67 109 109 TYR TYR A . n A 1 68 THR 68 110 110 THR THR A . n A 1 69 SER 69 111 111 SER SER A . n A 1 70 ASP 70 112 112 ASP ASP A . n A 1 71 ASP 71 113 113 ASP ASP A . n A 1 72 ILE 72 114 114 ILE ILE A . n A 1 73 ARG 73 115 115 ARG ARG A . n A 1 74 SER 74 116 116 SER SER A . n A 1 75 ILE 75 117 117 ILE ILE A . n A 1 76 SER 76 118 118 SER SER A . n A 1 77 PRO 77 119 119 PRO PRO A . n A 1 78 VAL 78 120 120 VAL VAL A . n A 1 79 ALA 79 121 121 ALA ALA A . n A 1 80 GLN 80 122 122 GLN GLN A . n A 1 81 GLN 81 123 123 GLN GLN A . n A 1 82 HIS 82 124 124 HIS HIS A . n A 1 83 VAL 83 125 125 VAL VAL A . n A 1 84 GLN 84 126 126 GLN GLN A . n A 1 85 THR 85 127 127 THR THR A . n A 1 86 GLY 86 128 128 GLY GLY A . n A 1 87 MET 87 129 129 MET MET A . n A 1 88 THR 88 130 130 THR THR A . n A 1 89 ILE 89 131 131 ILE ILE A . n A 1 90 GLY 90 132 132 GLY GLY A . n A 1 91 GLN 91 133 133 GLN GLN A . n A 1 92 LEU 92 134 134 LEU LEU A . n A 1 93 CYS 93 135 135 CYS CYS A . n A 1 94 ASP 94 136 136 ASP ASP A . n A 1 95 ALA 95 137 137 ALA ALA A . n A 1 96 ALA 96 138 138 ALA ALA A . n A 1 97 ILE 97 139 139 ILE ILE A . n A 1 98 ARG 98 140 140 ARG ARG A . n A 1 99 TYR 99 141 141 TYR TYR A . n A 1 100 SER 100 142 142 SER SER A . n A 1 101 ASP 101 143 143 ASP ASP A . n A 1 102 GLY 102 144 144 GLY GLY A . n A 1 103 THR 103 145 145 THR THR A . n A 1 104 ALA 104 146 146 ALA ALA A . n A 1 105 ALA 105 147 147 ALA ALA A . n A 1 106 ASN 106 148 148 ASN ASN A . n A 1 107 LEU 107 149 149 LEU LEU A . n A 1 108 LEU 108 150 150 LEU LEU A . n A 1 109 LEU 109 151 151 LEU LEU A . n A 1 110 ALA 110 152 152 ALA ALA A . n A 1 111 ASP 111 153 153 ASP ASP A . n A 1 112 LEU 112 154 154 LEU LEU A . n A 1 113 GLY 113 155 155 GLY GLY A . n A 1 114 GLY 114 156 156 GLY GLY A . n A 1 115 PRO 115 157 157 PRO PRO A . n A 1 116 GLY 116 158 158 GLY GLY A . n A 1 117 GLY 117 159 159 GLY GLY A . n A 1 118 GLY 118 160 160 GLY GLY A . n A 1 119 THR 119 161 161 THR THR A . n A 1 120 ALA 120 162 162 ALA ALA A . n A 1 121 ALA 121 163 163 ALA ALA A . n A 1 122 PHE 122 164 164 PHE PHE A . n A 1 123 THR 123 165 165 THR THR A . n A 1 124 GLY 124 166 166 GLY GLY A . n A 1 125 TYR 125 167 167 TYR TYR A . n A 1 126 LEU 126 168 168 LEU LEU A . n A 1 127 ARG 127 169 169 ARG ARG A . n A 1 128 SER 128 170 170 SER SER A . n A 1 129 LEU 129 171 171 LEU LEU A . n A 1 130 GLY 130 172 172 GLY GLY A . n A 1 131 ASP 131 173 173 ASP ASP A . n A 1 132 THR 132 174 174 THR THR A . n A 1 133 VAL 133 175 175 VAL VAL A . n A 1 134 SER 134 176 176 SER SER A . n A 1 135 ARG 135 177 177 ARG ARG A . n A 1 136 LEU 136 178 178 LEU LEU A . n A 1 137 ASP 137 179 179 ASP ASP A . n A 1 138 ALA 138 180 ? ? ? A . n A 1 139 GLU 139 181 ? ? ? A . n A 1 140 ALA 140 182 ? ? ? A . n A 1 141 PRO 141 183 ? ? ? A . n A 1 142 GLU 142 184 ? ? ? A . n A 1 143 LEU 143 185 ? ? ? A . n A 1 144 ASN 144 186 ? ? ? A . n A 1 145 ARG 145 187 ? ? ? A . n A 1 146 ASP 146 188 ? ? ? A . n A 1 147 PRO 147 189 189 PRO PRO A . n A 1 148 PRO 148 190 190 PRO PRO A . n A 1 149 GLY 149 191 191 GLY GLY A . n A 1 150 ASP 150 192 192 ASP ASP A . n A 1 151 GLU 151 193 193 GLU GLU A . n A 1 152 ARG 152 194 194 ARG ARG A . n A 1 153 ASP 153 195 195 ASP ASP A . n A 1 154 THR 154 196 196 THR THR A . n A 1 155 THR 155 197 197 THR THR A . n A 1 156 THR 156 198 198 THR THR A . n A 1 157 PRO 157 199 199 PRO PRO A . n A 1 158 HIS 158 200 200 HIS HIS A . n A 1 159 ALA 159 201 201 ALA ALA A . n A 1 160 ILE 160 202 202 ILE ILE A . n A 1 161 ALA 161 203 203 ALA ALA A . n A 1 162 LEU 162 204 204 LEU LEU A . n A 1 163 VAL 163 205 205 VAL VAL A . n A 1 164 LEU 164 206 206 LEU LEU A . n A 1 165 GLN 165 207 207 GLN GLN A . n A 1 166 GLN 166 208 208 GLN GLN A . n A 1 167 LEU 167 209 209 LEU LEU A . n A 1 168 VAL 168 210 210 VAL VAL A . n A 1 169 LEU 169 211 211 LEU LEU A . n A 1 170 GLY 170 212 212 GLY GLY A . n A 1 171 ASN 171 213 213 ASN ASN A . n A 1 172 ALA 172 214 214 ALA ALA A . n A 1 173 LEU 173 215 215 LEU LEU A . n A 1 174 PRO 174 216 216 PRO PRO A . n A 1 175 PRO 175 217 217 PRO PRO A . n A 1 176 ASP 176 218 218 ASP ASP A . n A 1 177 LYS 177 219 219 LYS LYS A . n A 1 178 ARG 178 220 220 ARG ARG A . n A 1 179 ALA 179 221 221 ALA ALA A . n A 1 180 LEU 180 222 222 LEU LEU A . n A 1 181 LEU 181 223 223 LEU LEU A . n A 1 182 THR 182 224 224 THR THR A . n A 1 183 ASP 183 225 225 ASP ASP A . n A 1 184 TRP 184 226 226 TRP TRP A . n A 1 185 MET 185 227 227 MET MET A . n A 1 186 ALA 186 228 228 ALA ALA A . n A 1 187 ARG 187 229 229 ARG ARG A . n A 1 188 ASN 188 230 230 ASN ASN A . n A 1 189 THR 189 231 231 THR THR A . n A 1 190 THR 190 232 232 THR THR A . n A 1 191 GLY 191 233 233 GLY GLY A . n A 1 192 ALA 192 234 234 ALA ALA A . n A 1 193 LYS 193 235 235 LYS LYS A . n A 1 194 ARG 194 236 236 ARG ARG A . n A 1 195 ILE 195 237 237 ILE ILE A . n A 1 196 ARG 196 238 238 ARG ARG A . n A 1 197 ALA 197 239 239 ALA ALA A . n A 1 198 GLY 198 240 240 GLY GLY A . n A 1 199 PHE 199 241 241 PHE PHE A . n A 1 200 PRO 200 242 242 PRO PRO A . n A 1 201 ALA 201 243 243 ALA ALA A . n A 1 202 ASP 202 244 244 ASP ASP A . n A 1 203 TRP 203 245 245 TRP TRP A . n A 1 204 LYS 204 246 246 LYS LYS A . n A 1 205 VAL 205 247 247 VAL VAL A . n A 1 206 ILE 206 248 248 ILE ILE A . n A 1 207 ASP 207 249 249 ASP ASP A . n A 1 208 LYS 208 250 250 LYS LYS A . n A 1 209 THR 209 251 251 THR THR A . n A 1 210 GLY 210 252 252 GLY GLY A . n A 1 211 THR 211 253 253 THR THR A . n A 1 212 GLY 212 254 254 GLY GLY A . n A 1 213 ASP 213 255 255 ASP ASP A . n A 1 214 TYR 214 256 256 TYR TYR A . n A 1 215 GLY 215 257 257 GLY GLY A . n A 1 216 ARG 216 258 258 ARG ARG A . n A 1 217 ALA 217 259 259 ALA ALA A . n A 1 218 ASN 218 260 260 ASN ASN A . n A 1 219 ASP 219 261 261 ASP ASP A . n A 1 220 ILE 220 262 262 ILE ILE A . n A 1 221 ALA 221 263 263 ALA ALA A . n A 1 222 VAL 222 264 264 VAL VAL A . n A 1 223 VAL 223 265 265 VAL VAL A . n A 1 224 TRP 224 266 266 TRP TRP A . n A 1 225 SER 225 267 267 SER SER A . n A 1 226 PRO 226 268 268 PRO PRO A . n A 1 227 THR 227 269 269 THR THR A . n A 1 228 GLY 228 270 270 GLY GLY A . n A 1 229 VAL 229 271 271 VAL VAL A . n A 1 230 PRO 230 272 272 PRO PRO A . n A 1 231 TYR 231 273 273 TYR TYR A . n A 1 232 VAL 232 274 274 VAL VAL A . n A 1 233 VAL 233 275 275 VAL VAL A . n A 1 234 ALA 234 276 276 ALA ALA A . n A 1 235 VAL 235 277 277 VAL VAL A . n A 1 236 MET 236 278 278 MET MET A . n A 1 237 SER 237 279 279 SER SER A . n A 1 238 ASP 238 280 280 ASP ASP A . n A 1 239 ARG 239 281 281 ARG ARG A . n A 1 240 ALA 240 282 282 ALA ALA A . n A 1 241 GLY 241 283 283 GLY GLY A . n A 1 242 GLY 242 284 284 GLY GLY A . n A 1 243 GLY 243 285 285 GLY GLY A . n A 1 244 TYR 244 286 286 TYR TYR A . n A 1 245 ASP 245 287 287 ASP ASP A . n A 1 246 ALA 246 288 288 ALA ALA A . n A 1 247 GLU 247 289 289 GLU GLU A . n A 1 248 PRO 248 290 290 PRO PRO A . n A 1 249 ARG 249 291 291 ARG ARG A . n A 1 250 GLU 250 292 292 GLU GLU A . n A 1 251 ALA 251 293 293 ALA ALA A . n A 1 252 LEU 252 294 294 LEU LEU A . n A 1 253 LEU 253 295 295 LEU LEU A . n A 1 254 ALA 254 296 296 ALA ALA A . n A 1 255 GLU 255 297 297 GLU GLU A . n A 1 256 ALA 256 298 298 ALA ALA A . n A 1 257 ALA 257 299 299 ALA ALA A . n A 1 258 THR 258 300 300 THR THR A . n A 1 259 CYS 259 301 301 CYS CYS A . n A 1 260 VAL 260 302 302 VAL VAL A . n A 1 261 ALA 261 303 303 ALA ALA A . n A 1 262 GLY 262 304 304 GLY GLY A . n A 1 263 VAL 263 305 305 VAL VAL A . n A 1 264 LEU 264 306 306 LEU LEU A . n A 1 265 ALA 265 307 307 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NFF 1 1 1 NFF NFF A . C 3 HOH 1 2 2 HOH HOH A . C 3 HOH 2 3 3 HOH HOH A . C 3 HOH 3 4 4 HOH HOH A . C 3 HOH 4 6 6 HOH HOH A . C 3 HOH 5 7 7 HOH HOH A . C 3 HOH 6 8 8 HOH HOH A . C 3 HOH 7 9 9 HOH HOH A . C 3 HOH 8 10 10 HOH HOH A . C 3 HOH 9 12 12 HOH HOH A . C 3 HOH 10 13 13 HOH HOH A . C 3 HOH 11 15 15 HOH HOH A . C 3 HOH 12 16 16 HOH HOH A . C 3 HOH 13 17 17 HOH HOH A . C 3 HOH 14 18 18 HOH HOH A . C 3 HOH 15 19 19 HOH HOH A . C 3 HOH 16 20 20 HOH HOH A . C 3 HOH 17 21 21 HOH HOH A . C 3 HOH 18 22 22 HOH HOH A . C 3 HOH 19 23 23 HOH HOH A . C 3 HOH 20 24 24 HOH HOH A . C 3 HOH 21 25 25 HOH HOH A . C 3 HOH 22 26 26 HOH HOH A . C 3 HOH 23 27 27 HOH HOH A . C 3 HOH 24 28 28 HOH HOH A . C 3 HOH 25 29 29 HOH HOH A . C 3 HOH 26 30 30 HOH HOH A . C 3 HOH 27 31 31 HOH HOH A . C 3 HOH 28 32 32 HOH HOH A . C 3 HOH 29 308 1 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-12-14 2 'Structure model' 1 1 2012-03-28 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2018-06-20 5 'Structure model' 1 4 2018-10-03 6 'Structure model' 1 5 2019-04-03 7 'Structure model' 1 6 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Structure summary' 5 5 'Structure model' 'Data collection' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Derived calculations' 8 7 'Structure model' 'Data collection' 9 7 'Structure model' 'Database references' 10 7 'Structure model' 'Derived calculations' 11 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp 3 5 'Structure model' diffrn_radiation_wavelength 4 6 'Structure model' diffrn_radiation 5 6 'Structure model' diffrn_radiation_wavelength 6 6 'Structure model' struct_conn 7 7 'Structure model' chem_comp_atom 8 7 'Structure model' chem_comp_bond 9 7 'Structure model' database_2 10 7 'Structure model' pdbx_initial_refinement_model 11 7 'Structure model' struct_conn 12 7 'Structure model' struct_ref_seq_dif 13 7 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.pdbx_synonyms' 2 5 'Structure model' '_diffrn_radiation_wavelength.wavelength' 3 6 'Structure model' '_diffrn_radiation.wavelength_id' 4 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 7 'Structure model' '_database_2.pdbx_DOI' 6 7 'Structure model' '_database_2.pdbx_database_accession' 7 7 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 8 7 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 9 7 'Structure model' '_struct_conn.ptnr1_label_asym_id' 10 7 'Structure model' '_struct_conn.ptnr1_label_atom_id' 11 7 'Structure model' '_struct_conn.ptnr1_label_comp_id' 12 7 'Structure model' '_struct_conn.ptnr1_label_seq_id' 13 7 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 7 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 7 'Structure model' '_struct_conn.ptnr2_label_asym_id' 16 7 'Structure model' '_struct_conn.ptnr2_label_atom_id' 17 7 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 7 'Structure model' '_struct_conn.ptnr2_label_seq_id' 19 7 'Structure model' '_struct_ref_seq_dif.details' 20 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 21 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 22 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.5.0102 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.100 'May. 21, 2010' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 CBASS . ? ? ? ? 'data collection' ? ? ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 66 ? ? -127.69 -165.10 2 1 ALA A 81 ? ? -47.26 159.08 3 1 CYS A 83 ? ? 73.26 -141.31 4 1 THR A 110 ? ? -113.17 -166.87 5 1 GLN A 123 ? ? -84.77 35.09 6 1 HIS A 124 ? ? -145.90 -29.25 7 1 VAL A 125 ? ? -34.16 -30.88 8 1 ASP A 192 ? ? -37.51 137.34 9 1 ARG A 236 ? ? -125.66 -131.40 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 180 ? A ALA 138 2 1 Y 1 A GLU 181 ? A GLU 139 3 1 Y 1 A ALA 182 ? A ALA 140 4 1 Y 1 A PRO 183 ? A PRO 141 5 1 Y 1 A GLU 184 ? A GLU 142 6 1 Y 1 A LEU 185 ? A LEU 143 7 1 Y 1 A ASN 186 ? A ASN 144 8 1 Y 1 A ARG 187 ? A ARG 145 9 1 Y 1 A ASP 188 ? A ASP 146 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 NFF C C N N 250 NFF N N N N 251 NFF O O N N 252 NFF CA C N R 253 NFF CB C N R 254 NFF CAA C N N 255 NFF CAB C N N 256 NFF CAC C N N 257 NFF OAE O N N 258 NFF OAF O N N 259 NFF OAG O N N 260 NFF CAI C Y N 261 NFF CAJ C Y N 262 NFF CAK C Y N 263 NFF CAL C Y N 264 NFF CAM C Y N 265 NFF CAN C Y N 266 NFF CAO C N N 267 NFF NAQ N N N 268 NFF OAR O N N 269 NFF SAS S N N 270 NFF CAT C N N 271 NFF CAU C N N 272 NFF CAV C Y N 273 NFF CAW C Y N 274 NFF CAX C Y N 275 NFF CAY C Y N 276 NFF CBB C N S 277 NFF CBC C N N 278 NFF H H N N 279 NFF HN H N N 280 NFF HAA H N N 281 NFF HB H N N 282 NFF HAAA H N N 283 NFF HAAB H N N 284 NFF HAAC H N N 285 NFF HAB H N N 286 NFF HABA H N N 287 NFF HABB H N N 288 NFF HAC H N N 289 NFF HACA H N N 290 NFF HACB H N N 291 NFF HOAE H N N 292 NFF HAI H N N 293 NFF HAJ H N N 294 NFF HAK H N N 295 NFF HAL H N N 296 NFF HAM H N N 297 NFF HAN H N N 298 NFF HAO H N N 299 NFF HAOA H N N 300 NFF HNAQ H N N 301 NFF HBB H N N 302 PHE N N N N 303 PHE CA C N S 304 PHE C C N N 305 PHE O O N N 306 PHE CB C N N 307 PHE CG C Y N 308 PHE CD1 C Y N 309 PHE CD2 C Y N 310 PHE CE1 C Y N 311 PHE CE2 C Y N 312 PHE CZ C Y N 313 PHE OXT O N N 314 PHE H H N N 315 PHE H2 H N N 316 PHE HA H N N 317 PHE HB2 H N N 318 PHE HB3 H N N 319 PHE HD1 H N N 320 PHE HD2 H N N 321 PHE HE1 H N N 322 PHE HE2 H N N 323 PHE HZ H N N 324 PHE HXT H N N 325 PRO N N N N 326 PRO CA C N S 327 PRO C C N N 328 PRO O O N N 329 PRO CB C N N 330 PRO CG C N N 331 PRO CD C N N 332 PRO OXT O N N 333 PRO H H N N 334 PRO HA H N N 335 PRO HB2 H N N 336 PRO HB3 H N N 337 PRO HG2 H N N 338 PRO HG3 H N N 339 PRO HD2 H N N 340 PRO HD3 H N N 341 PRO HXT H N N 342 SER N N N N 343 SER CA C N S 344 SER C C N N 345 SER O O N N 346 SER CB C N N 347 SER OG O N N 348 SER OXT O N N 349 SER H H N N 350 SER H2 H N N 351 SER HA H N N 352 SER HB2 H N N 353 SER HB3 H N N 354 SER HG H N N 355 SER HXT H N N 356 THR N N N N 357 THR CA C N S 358 THR C C N N 359 THR O O N N 360 THR CB C N R 361 THR OG1 O N N 362 THR CG2 C N N 363 THR OXT O N N 364 THR H H N N 365 THR H2 H N N 366 THR HA H N N 367 THR HB H N N 368 THR HG1 H N N 369 THR HG21 H N N 370 THR HG22 H N N 371 THR HG23 H N N 372 THR HXT H N N 373 TRP N N N N 374 TRP CA C N S 375 TRP C C N N 376 TRP O O N N 377 TRP CB C N N 378 TRP CG C Y N 379 TRP CD1 C Y N 380 TRP CD2 C Y N 381 TRP NE1 N Y N 382 TRP CE2 C Y N 383 TRP CE3 C Y N 384 TRP CZ2 C Y N 385 TRP CZ3 C Y N 386 TRP CH2 C Y N 387 TRP OXT O N N 388 TRP H H N N 389 TRP H2 H N N 390 TRP HA H N N 391 TRP HB2 H N N 392 TRP HB3 H N N 393 TRP HD1 H N N 394 TRP HE1 H N N 395 TRP HE3 H N N 396 TRP HZ2 H N N 397 TRP HZ3 H N N 398 TRP HH2 H N N 399 TRP HXT H N N 400 TYR N N N N 401 TYR CA C N S 402 TYR C C N N 403 TYR O O N N 404 TYR CB C N N 405 TYR CG C Y N 406 TYR CD1 C Y N 407 TYR CD2 C Y N 408 TYR CE1 C Y N 409 TYR CE2 C Y N 410 TYR CZ C Y N 411 TYR OH O N N 412 TYR OXT O N N 413 TYR H H N N 414 TYR H2 H N N 415 TYR HA H N N 416 TYR HB2 H N N 417 TYR HB3 H N N 418 TYR HD1 H N N 419 TYR HD2 H N N 420 TYR HE1 H N N 421 TYR HE2 H N N 422 TYR HH H N N 423 TYR HXT H N N 424 VAL N N N N 425 VAL CA C N S 426 VAL C C N N 427 VAL O O N N 428 VAL CB C N N 429 VAL CG1 C N N 430 VAL CG2 C N N 431 VAL OXT O N N 432 VAL H H N N 433 VAL H2 H N N 434 VAL HA H N N 435 VAL HB H N N 436 VAL HG11 H N N 437 VAL HG12 H N N 438 VAL HG13 H N N 439 VAL HG21 H N N 440 VAL HG22 H N N 441 VAL HG23 H N N 442 VAL HXT H N N 443 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 NFF O C doub N N 237 NFF CA C sing N N 238 NFF C H sing N N 239 NFF CAU N sing N N 240 NFF N CA sing N N 241 NFF N HN sing N N 242 NFF CA CB sing N N 243 NFF CA HAA sing N N 244 NFF SAS CB sing N N 245 NFF CB NAQ sing N N 246 NFF CB HB sing N N 247 NFF CAO CAA sing N N 248 NFF CAA HAAA sing N N 249 NFF CAA HAAB sing N N 250 NFF CAA HAAC sing N N 251 NFF CAB CBC sing N N 252 NFF CAB HAB sing N N 253 NFF CAB HABA sing N N 254 NFF CAB HABB sing N N 255 NFF CBC CAC sing N N 256 NFF CAC HAC sing N N 257 NFF CAC HACA sing N N 258 NFF CAC HACB sing N N 259 NFF CAT OAE sing N N 260 NFF OAE HOAE sing N N 261 NFF CAU OAF doub N N 262 NFF OAG CAT doub N N 263 NFF CAL CAI doub Y N 264 NFF CAI CAJ sing Y N 265 NFF CAI HAI sing N N 266 NFF CAJ CAM doub Y N 267 NFF CAJ HAJ sing N N 268 NFF CAN CAK sing Y N 269 NFF CAK CAV doub Y N 270 NFF CAK HAK sing N N 271 NFF CAL CAX sing Y N 272 NFF CAL HAL sing N N 273 NFF CAY CAM sing Y N 274 NFF CAM HAM sing N N 275 NFF CAN CAX doub Y N 276 NFF CAN HAN sing N N 277 NFF CAO OAR sing N N 278 NFF CAO HAO sing N N 279 NFF CAO HAOA sing N N 280 NFF CBB NAQ sing N N 281 NFF NAQ HNAQ sing N N 282 NFF CAV OAR sing N N 283 NFF CBC SAS sing N N 284 NFF CBB CAT sing N N 285 NFF CAW CAU sing N N 286 NFF CAV CAW sing Y N 287 NFF CAY CAW doub Y N 288 NFF CAX CAY sing Y N 289 NFF CBC CBB sing N N 290 NFF CBB HBB sing N N 291 PHE N CA sing N N 292 PHE N H sing N N 293 PHE N H2 sing N N 294 PHE CA C sing N N 295 PHE CA CB sing N N 296 PHE CA HA sing N N 297 PHE C O doub N N 298 PHE C OXT sing N N 299 PHE CB CG sing N N 300 PHE CB HB2 sing N N 301 PHE CB HB3 sing N N 302 PHE CG CD1 doub Y N 303 PHE CG CD2 sing Y N 304 PHE CD1 CE1 sing Y N 305 PHE CD1 HD1 sing N N 306 PHE CD2 CE2 doub Y N 307 PHE CD2 HD2 sing N N 308 PHE CE1 CZ doub Y N 309 PHE CE1 HE1 sing N N 310 PHE CE2 CZ sing Y N 311 PHE CE2 HE2 sing N N 312 PHE CZ HZ sing N N 313 PHE OXT HXT sing N N 314 PRO N CA sing N N 315 PRO N CD sing N N 316 PRO N H sing N N 317 PRO CA C sing N N 318 PRO CA CB sing N N 319 PRO CA HA sing N N 320 PRO C O doub N N 321 PRO C OXT sing N N 322 PRO CB CG sing N N 323 PRO CB HB2 sing N N 324 PRO CB HB3 sing N N 325 PRO CG CD sing N N 326 PRO CG HG2 sing N N 327 PRO CG HG3 sing N N 328 PRO CD HD2 sing N N 329 PRO CD HD3 sing N N 330 PRO OXT HXT sing N N 331 SER N CA sing N N 332 SER N H sing N N 333 SER N H2 sing N N 334 SER CA C sing N N 335 SER CA CB sing N N 336 SER CA HA sing N N 337 SER C O doub N N 338 SER C OXT sing N N 339 SER CB OG sing N N 340 SER CB HB2 sing N N 341 SER CB HB3 sing N N 342 SER OG HG sing N N 343 SER OXT HXT sing N N 344 THR N CA sing N N 345 THR N H sing N N 346 THR N H2 sing N N 347 THR CA C sing N N 348 THR CA CB sing N N 349 THR CA HA sing N N 350 THR C O doub N N 351 THR C OXT sing N N 352 THR CB OG1 sing N N 353 THR CB CG2 sing N N 354 THR CB HB sing N N 355 THR OG1 HG1 sing N N 356 THR CG2 HG21 sing N N 357 THR CG2 HG22 sing N N 358 THR CG2 HG23 sing N N 359 THR OXT HXT sing N N 360 TRP N CA sing N N 361 TRP N H sing N N 362 TRP N H2 sing N N 363 TRP CA C sing N N 364 TRP CA CB sing N N 365 TRP CA HA sing N N 366 TRP C O doub N N 367 TRP C OXT sing N N 368 TRP CB CG sing N N 369 TRP CB HB2 sing N N 370 TRP CB HB3 sing N N 371 TRP CG CD1 doub Y N 372 TRP CG CD2 sing Y N 373 TRP CD1 NE1 sing Y N 374 TRP CD1 HD1 sing N N 375 TRP CD2 CE2 doub Y N 376 TRP CD2 CE3 sing Y N 377 TRP NE1 CE2 sing Y N 378 TRP NE1 HE1 sing N N 379 TRP CE2 CZ2 sing Y N 380 TRP CE3 CZ3 doub Y N 381 TRP CE3 HE3 sing N N 382 TRP CZ2 CH2 doub Y N 383 TRP CZ2 HZ2 sing N N 384 TRP CZ3 CH2 sing Y N 385 TRP CZ3 HZ3 sing N N 386 TRP CH2 HH2 sing N N 387 TRP OXT HXT sing N N 388 TYR N CA sing N N 389 TYR N H sing N N 390 TYR N H2 sing N N 391 TYR CA C sing N N 392 TYR CA CB sing N N 393 TYR CA HA sing N N 394 TYR C O doub N N 395 TYR C OXT sing N N 396 TYR CB CG sing N N 397 TYR CB HB2 sing N N 398 TYR CB HB3 sing N N 399 TYR CG CD1 doub Y N 400 TYR CG CD2 sing Y N 401 TYR CD1 CE1 sing Y N 402 TYR CD1 HD1 sing N N 403 TYR CD2 CE2 doub Y N 404 TYR CD2 HD2 sing N N 405 TYR CE1 CZ doub Y N 406 TYR CE1 HE1 sing N N 407 TYR CE2 CZ sing Y N 408 TYR CE2 HE2 sing N N 409 TYR CZ OH sing N N 410 TYR OH HH sing N N 411 TYR OXT HXT sing N N 412 VAL N CA sing N N 413 VAL N H sing N N 414 VAL N H2 sing N N 415 VAL CA C sing N N 416 VAL CA CB sing N N 417 VAL CA HA sing N N 418 VAL C O doub N N 419 VAL C OXT sing N N 420 VAL CB CG1 sing N N 421 VAL CB CG2 sing N N 422 VAL CB HB sing N N 423 VAL CG1 HG11 sing N N 424 VAL CG1 HG12 sing N N 425 VAL CG1 HG13 sing N N 426 VAL CG2 HG21 sing N N 427 VAL CG2 HG22 sing N N 428 VAL CG2 HG23 sing N N 429 VAL OXT HXT sing N N 430 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(2R,4S)-2-[(1R)-1-{[(2-ethoxynaphthalen-1-yl)carbonyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' NFF 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3DWZ _pdbx_initial_refinement_model.details 'PDB entry 3DWZ' #