data_3NEK # _entry.id 3NEK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3NEK RCSB RCSB059730 WWPDB D_1000059730 # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2010-06-23 _pdbx_database_PDB_obs_spr.pdb_id 3NEK _pdbx_database_PDB_obs_spr.replace_pdb_id 2QYX _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-10196A _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3NEK _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-06-09 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bonanno, J.B.' 1 ? 'Patskovsky, Y.' 2 ? 'Malashkevich, V.' 3 ? 'Ozyurt, S.' 4 ? 'Dickey, M.' 5 ? 'Wu, B.' 6 ? 'Maletic, M.' 7 ? 'Rodgers, L.' 8 ? 'Koss, J.' 9 ? 'Sauder, J.M.' 10 0000-0002-0254-4955 'Burley, S.K.' 11 0000-0002-2487-9713 'Almo, S.C.' 12 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 13 ? # _citation.id primary _citation.title 'Structural underpinnings of nitrogen regulation by the prototypical nitrogen-responsive transcriptional factor NrpR.' _citation.journal_abbrev Structure _citation.journal_volume 18 _citation.page_first 1512 _citation.page_last 1521 _citation.year 2010 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21070950 _citation.pdbx_database_id_DOI 10.1016/j.str.2010.08.014 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wisedchaisri, G.' 1 ? primary 'Dranow, D.M.' 2 ? primary 'Lie, T.J.' 3 ? primary 'Bonanno, J.B.' 4 ? primary 'Patskovsky, Y.' 5 ? primary 'Ozyurt, S.A.' 6 ? primary 'Sauder, J.M.' 7 ? primary 'Almo, S.C.' 8 ? primary 'Wasserman, S.R.' 9 ? primary 'Burley, S.K.' 10 0000-0002-2487-9713 primary 'Leigh, J.A.' 11 ? primary 'Gonen, T.' 12 ? # _cell.length_a 80.009 _cell.length_b 80.009 _cell.length_c 116.421 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3NEK _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.entry_id 3NEK _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 152 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'nitrogen repressor-like protein MJ0159' 27206.715 2 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 3 water nat water 18.015 14 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SLKKNPRDIVTKKANIRIKTALSK(MSE)FNA(MSE)AKVTYDIDEADGDVIVNTAFIDKKYLDEAFDILKEAYKKGLGI SDRFGIVEENDRIKIQTICAVTLDGIFLRNSVPLIPKYGGILEITEDKERFIDIIGYDGSSLDPHEVFFNFVDCEKTFLA GFREVHRVAREKLEEVLKKLNWNGIKAIGEPNNELYGIGVNKD(MSE)CGVVT(MSE)GGINPLVLLKENEIPIELKA (MSE)HEVVRFSDLKSYKEI ; _entity_poly.pdbx_seq_one_letter_code_can ;SLKKNPRDIVTKKANIRIKTALSKMFNAMAKVTYDIDEADGDVIVNTAFIDKKYLDEAFDILKEAYKKGLGISDRFGIVE ENDRIKIQTICAVTLDGIFLRNSVPLIPKYGGILEITEDKERFIDIIGYDGSSLDPHEVFFNFVDCEKTFLAGFREVHRV AREKLEEVLKKLNWNGIKAIGEPNNELYGIGVNKDMCGVVTMGGINPLVLLKENEIPIELKAMHEVVRFSDLKSYKEI ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier NYSGXRC-10196A # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LEU n 1 3 LYS n 1 4 LYS n 1 5 ASN n 1 6 PRO n 1 7 ARG n 1 8 ASP n 1 9 ILE n 1 10 VAL n 1 11 THR n 1 12 LYS n 1 13 LYS n 1 14 ALA n 1 15 ASN n 1 16 ILE n 1 17 ARG n 1 18 ILE n 1 19 LYS n 1 20 THR n 1 21 ALA n 1 22 LEU n 1 23 SER n 1 24 LYS n 1 25 MSE n 1 26 PHE n 1 27 ASN n 1 28 ALA n 1 29 MSE n 1 30 ALA n 1 31 LYS n 1 32 VAL n 1 33 THR n 1 34 TYR n 1 35 ASP n 1 36 ILE n 1 37 ASP n 1 38 GLU n 1 39 ALA n 1 40 ASP n 1 41 GLY n 1 42 ASP n 1 43 VAL n 1 44 ILE n 1 45 VAL n 1 46 ASN n 1 47 THR n 1 48 ALA n 1 49 PHE n 1 50 ILE n 1 51 ASP n 1 52 LYS n 1 53 LYS n 1 54 TYR n 1 55 LEU n 1 56 ASP n 1 57 GLU n 1 58 ALA n 1 59 PHE n 1 60 ASP n 1 61 ILE n 1 62 LEU n 1 63 LYS n 1 64 GLU n 1 65 ALA n 1 66 TYR n 1 67 LYS n 1 68 LYS n 1 69 GLY n 1 70 LEU n 1 71 GLY n 1 72 ILE n 1 73 SER n 1 74 ASP n 1 75 ARG n 1 76 PHE n 1 77 GLY n 1 78 ILE n 1 79 VAL n 1 80 GLU n 1 81 GLU n 1 82 ASN n 1 83 ASP n 1 84 ARG n 1 85 ILE n 1 86 LYS n 1 87 ILE n 1 88 GLN n 1 89 THR n 1 90 ILE n 1 91 CYS n 1 92 ALA n 1 93 VAL n 1 94 THR n 1 95 LEU n 1 96 ASP n 1 97 GLY n 1 98 ILE n 1 99 PHE n 1 100 LEU n 1 101 ARG n 1 102 ASN n 1 103 SER n 1 104 VAL n 1 105 PRO n 1 106 LEU n 1 107 ILE n 1 108 PRO n 1 109 LYS n 1 110 TYR n 1 111 GLY n 1 112 GLY n 1 113 ILE n 1 114 LEU n 1 115 GLU n 1 116 ILE n 1 117 THR n 1 118 GLU n 1 119 ASP n 1 120 LYS n 1 121 GLU n 1 122 ARG n 1 123 PHE n 1 124 ILE n 1 125 ASP n 1 126 ILE n 1 127 ILE n 1 128 GLY n 1 129 TYR n 1 130 ASP n 1 131 GLY n 1 132 SER n 1 133 SER n 1 134 LEU n 1 135 ASP n 1 136 PRO n 1 137 HIS n 1 138 GLU n 1 139 VAL n 1 140 PHE n 1 141 PHE n 1 142 ASN n 1 143 PHE n 1 144 VAL n 1 145 ASP n 1 146 CYS n 1 147 GLU n 1 148 LYS n 1 149 THR n 1 150 PHE n 1 151 LEU n 1 152 ALA n 1 153 GLY n 1 154 PHE n 1 155 ARG n 1 156 GLU n 1 157 VAL n 1 158 HIS n 1 159 ARG n 1 160 VAL n 1 161 ALA n 1 162 ARG n 1 163 GLU n 1 164 LYS n 1 165 LEU n 1 166 GLU n 1 167 GLU n 1 168 VAL n 1 169 LEU n 1 170 LYS n 1 171 LYS n 1 172 LEU n 1 173 ASN n 1 174 TRP n 1 175 ASN n 1 176 GLY n 1 177 ILE n 1 178 LYS n 1 179 ALA n 1 180 ILE n 1 181 GLY n 1 182 GLU n 1 183 PRO n 1 184 ASN n 1 185 ASN n 1 186 GLU n 1 187 LEU n 1 188 TYR n 1 189 GLY n 1 190 ILE n 1 191 GLY n 1 192 VAL n 1 193 ASN n 1 194 LYS n 1 195 ASP n 1 196 MSE n 1 197 CYS n 1 198 GLY n 1 199 VAL n 1 200 VAL n 1 201 THR n 1 202 MSE n 1 203 GLY n 1 204 GLY n 1 205 ILE n 1 206 ASN n 1 207 PRO n 1 208 LEU n 1 209 VAL n 1 210 LEU n 1 211 LEU n 1 212 LYS n 1 213 GLU n 1 214 ASN n 1 215 GLU n 1 216 ILE n 1 217 PRO n 1 218 ILE n 1 219 GLU n 1 220 LEU n 1 221 LYS n 1 222 ALA n 1 223 MSE n 1 224 HIS n 1 225 GLU n 1 226 VAL n 1 227 VAL n 1 228 ARG n 1 229 PHE n 1 230 SER n 1 231 ASP n 1 232 LEU n 1 233 LYS n 1 234 SER n 1 235 TYR n 1 236 LYS n 1 237 GLU n 1 238 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Methanococcus jannaschii' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MJ0159 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanocaldococcus jannaschii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2190 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'modified pET26' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y159_METJA _struct_ref.pdbx_db_accession Q57623 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LKKNPRDIVTKKANIRIKTALSKMFNAMAKVTYDIDEADGDVIVNTAFIDKKYLDEAFDILKEAYKKGLGISDRFGIVEE NDRIKIQTICAVTLDGIFLRNSVPLIPKYGGILEITEDKERFIDIIGYDGSSLDPHEVFFNFVDCEKTFLAGFREVHRVA REKLEEVLKKLNWNGIKAIGEPNNELYGIGVNKDMCGVVTMGGINPLVLLKENEIPIELKAMHEVVRFSDLKSYKEI ; _struct_ref.pdbx_align_begin 306 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3NEK A 2 ? 238 ? Q57623 306 ? 542 ? 306 542 2 1 3NEK B 2 ? 238 ? Q57623 306 ? 542 ? 306 542 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3NEK SER A 1 ? UNP Q57623 ? ? 'expression tag' 305 1 2 3NEK SER B 1 ? UNP Q57623 ? ? 'expression tag' 305 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3NEK _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 37.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 294 _exptl_crystal_grow.pdbx_details '100mM sodium MES pH 7.0, 40% MPD, vapor diffusion, temperature 294K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2007-06-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator diamond _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97958 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 31-ID' _diffrn_source.pdbx_wavelength_list 0.97958 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 31-ID # _reflns.entry_id 3NEK _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.500 _reflns.d_resolution_low 50.000 _reflns.number_all 15446 _reflns.number_obs 15322 _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.07500 _reflns.pdbx_Rsym_value 0.07500 _reflns.pdbx_netI_over_sigmaI 7.1000 _reflns.B_iso_Wilson_estimate 51.47 _reflns.pdbx_redundancy 4.900 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 98.8 _reflns_shell.Rmerge_I_obs 0.59000 _reflns_shell.meanI_over_sigI_obs 1.000 _reflns_shell.pdbx_Rsym_value 0.59000 _reflns_shell.pdbx_redundancy 3.80 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3NEK _refine.ls_d_res_high 2.500 _refine.ls_d_res_low 33.150 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.3 _refine.ls_number_reflns_obs 15303 _refine.ls_number_reflns_all 15411 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.247 _refine.ls_R_factor_R_work 0.246 _refine.ls_wR_factor_R_work 0.233 _refine.ls_R_factor_R_free 0.277 _refine.ls_wR_factor_R_free 0.259 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 785 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 55.556 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.490 _refine.aniso_B[2][2] 1.490 _refine.aniso_B[3][3] -2.240 _refine.aniso_B[1][2] 0.750 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.930 _refine.correlation_coeff_Fo_to_Fc_free 0.910 _refine.overall_SU_R_Cruickshank_DPI 1.955 _refine.overall_SU_R_free 0.348 _refine.pdbx_overall_ESU_R_Free 0.348 _refine.overall_SU_ML 0.278 _refine.overall_SU_B 27.562 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.909 _refine.B_iso_max 98.77 _refine.B_iso_min 19.78 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_ls_sigma_I 0 _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3507 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 14 _refine_hist.number_atoms_total 3539 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 33.150 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 3580 0.008 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 4814 1.116 1.979 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 439 5.007 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 165 39.919 25.030 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 677 19.787 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18 16.586 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 542 0.075 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2634 0.003 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2181 0.488 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3529 0.955 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1399 1.343 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1285 2.247 4.500 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 'X-RAY DIFFRACTION' 1 1 'LOOSE POSITIONAL' A 1741 0.500 5.000 1 ? ? ? 'X-RAY DIFFRACTION' 1 1 'LOOSE THERMAL' A 1741 1.950 10.000 2 ? ? ? # _refine_ls_shell.d_res_high 2.500 _refine_ls_shell.d_res_low 2.565 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.9 _refine_ls_shell.number_reflns_R_work 1053 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.312 _refine_ls_shell.R_factor_R_free 0.296 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 60 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1113 _refine_ls_shell.number_reflns_obs 1053 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id 1 1 1 6 A 321 A 539 ? . . . . . . . . 1 2 1 6 B 321 B 539 ? . . . . . . . . # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3NEK _struct.title 'Crystal structure of a nitrogen repressor-like protein MJ0159 from Methanococcus jannaschii' _struct.pdbx_descriptor 'nitrogen repressor-like protein MJ0159' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NEK _struct_keywords.text ;STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC ; _struct_keywords.pdbx_keywords 'structural genomics, unknown function' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? # _struct_biol.id 1 _struct_biol.details 'probable dimer' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 20 ? ALA A 30 ? THR A 324 ALA A 334 1 ? 11 HELX_P HELX_P2 2 TYR A 54 ? LYS A 68 ? TYR A 358 LYS A 372 1 ? 15 HELX_P HELX_P3 3 ALA A 92 ? ASN A 102 ? ALA A 396 ASN A 406 1 ? 11 HELX_P HELX_P4 4 ASP A 135 ? PHE A 140 ? ASP A 439 PHE A 444 1 ? 6 HELX_P HELX_P5 5 PHE A 141 ? VAL A 144 ? PHE A 445 VAL A 448 5 ? 4 HELX_P HELX_P6 6 ALA A 161 ? ASN A 173 ? ALA A 465 ASN A 477 1 ? 13 HELX_P HELX_P7 7 ILE A 205 ? ASN A 214 ? ILE A 509 ASN A 518 1 ? 10 HELX_P HELX_P8 8 SER A 230 ? LEU A 232 ? SER A 534 LEU A 536 5 ? 3 HELX_P HELX_P9 9 THR B 20 ? VAL B 32 ? THR B 324 VAL B 336 1 ? 13 HELX_P HELX_P10 10 TYR B 54 ? LYS B 68 ? TYR B 358 LYS B 372 1 ? 15 HELX_P HELX_P11 11 CYS B 91 ? ARG B 101 ? CYS B 395 ARG B 405 1 ? 11 HELX_P HELX_P12 12 ASP B 135 ? PHE B 141 ? ASP B 439 PHE B 445 1 ? 7 HELX_P HELX_P13 13 ASN B 142 ? VAL B 144 ? ASN B 446 VAL B 448 5 ? 3 HELX_P HELX_P14 14 ALA B 161 ? ASN B 173 ? ALA B 465 ASN B 477 1 ? 13 HELX_P HELX_P15 15 ILE B 205 ? ASN B 214 ? ILE B 509 ASN B 518 1 ? 10 HELX_P HELX_P16 16 SER B 230 ? LEU B 232 ? SER B 534 LEU B 536 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LYS 24 C ? ? ? 1_555 A MSE 25 N ? ? A LYS 328 A MSE 329 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A MSE 25 C ? ? ? 1_555 A PHE 26 N ? ? A MSE 329 A PHE 330 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale3 covale both ? A ALA 28 C ? ? ? 1_555 A MSE 29 N ? ? A ALA 332 A MSE 333 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale4 covale both ? A MSE 29 C ? ? ? 1_555 A ALA 30 N ? ? A MSE 333 A ALA 334 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A ASP 195 C ? ? ? 1_555 A MSE 196 N ? ? A ASP 499 A MSE 500 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale6 covale both ? A MSE 196 C ? ? ? 1_555 A CYS 197 N ? ? A MSE 500 A CYS 501 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale both ? A THR 201 C ? ? ? 1_555 A MSE 202 N ? ? A THR 505 A MSE 506 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale8 covale both ? A MSE 202 C ? ? ? 1_555 A GLY 203 N ? ? A MSE 506 A GLY 507 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale9 covale both ? A ALA 222 C ? ? ? 1_555 A MSE 223 N ? ? A ALA 526 A MSE 527 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale10 covale both ? A MSE 223 C ? ? ? 1_555 A HIS 224 N ? ? A MSE 527 A HIS 528 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale11 covale both ? B LYS 24 C ? ? ? 1_555 B MSE 25 N ? ? B LYS 328 B MSE 329 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale12 covale both ? B MSE 25 C ? ? ? 1_555 B PHE 26 N ? ? B MSE 329 B PHE 330 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale13 covale both ? B ALA 28 C ? ? ? 1_555 B MSE 29 N ? ? B ALA 332 B MSE 333 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale14 covale both ? B MSE 29 C ? ? ? 1_555 B ALA 30 N ? ? B MSE 333 B ALA 334 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale15 covale both ? B ASP 195 C ? ? ? 1_555 B MSE 196 N ? ? B ASP 499 B MSE 500 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale16 covale both ? B MSE 196 C ? ? ? 1_555 B CYS 197 N ? ? B MSE 500 B CYS 501 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale17 covale both ? B THR 201 C ? ? ? 1_555 B MSE 202 N ? ? B THR 505 B MSE 506 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale18 covale both ? B MSE 202 C ? ? ? 1_555 B GLY 203 N ? ? B MSE 506 B GLY 507 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale19 covale both ? B ALA 222 C ? ? ? 1_555 B MSE 223 N ? ? B ALA 526 B MSE 527 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale20 covale both ? B MSE 223 C ? ? ? 1_555 B HIS 224 N ? ? B MSE 527 B HIS 528 1_555 ? ? ? ? ? ? ? 1.333 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? C ? 5 ? D ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 219 ? ARG A 228 ? GLU A 523 ARG A 532 A 2 ASP A 42 ? ASP A 51 ? ASP A 346 ASP A 355 A 3 ARG A 84 ? ILE A 90 ? ARG A 388 ILE A 394 A 4 ARG A 75 ? GLU A 80 ? ARG A 379 GLU A 384 A 5 LYS A 233 ? SER A 234 ? LYS A 537 SER A 538 B 1 GLU A 121 ? GLY A 128 ? GLU A 425 GLY A 432 B 2 LEU A 106 ? ILE A 116 ? LEU A 410 ILE A 420 B 3 THR A 149 ? HIS A 158 ? THR A 453 HIS A 462 B 4 MSE A 196 ? MSE A 202 ? MSE A 500 MSE A 506 B 5 ILE A 177 ? ILE A 180 ? ILE A 481 ILE A 484 C 1 GLU B 219 ? ARG B 228 ? GLU B 523 ARG B 532 C 2 ASP B 42 ? ASP B 51 ? ASP B 346 ASP B 355 C 3 ARG B 84 ? ILE B 90 ? ARG B 388 ILE B 394 C 4 ARG B 75 ? GLU B 80 ? ARG B 379 GLU B 384 C 5 LYS B 233 ? SER B 234 ? LYS B 537 SER B 538 D 1 GLU B 121 ? GLY B 128 ? GLU B 425 GLY B 432 D 2 LEU B 106 ? ILE B 116 ? LEU B 410 ILE B 420 D 3 THR B 149 ? HIS B 158 ? THR B 453 HIS B 462 D 4 MSE B 196 ? MSE B 202 ? MSE B 500 MSE B 506 D 5 ILE B 177 ? ILE B 180 ? ILE B 481 ILE B 484 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 227 ? O VAL A 531 N VAL A 43 ? N VAL A 347 A 2 3 N ASN A 46 ? N ASN A 350 O THR A 89 ? O THR A 393 A 3 4 O GLN A 88 ? O GLN A 392 N GLY A 77 ? N GLY A 381 A 4 5 N PHE A 76 ? N PHE A 380 O LYS A 233 ? O LYS A 537 B 1 2 O ARG A 122 ? O ARG A 426 N GLU A 115 ? N GLU A 419 B 2 3 N LEU A 114 ? N LEU A 418 O PHE A 150 ? O PHE A 454 B 3 4 N ARG A 155 ? N ARG A 459 O VAL A 199 ? O VAL A 503 B 4 5 O VAL A 200 ? O VAL A 504 N LYS A 178 ? N LYS A 482 C 1 2 O GLU B 219 ? O GLU B 523 N PHE B 49 ? N PHE B 353 C 2 3 N ASN B 46 ? N ASN B 350 O THR B 89 ? O THR B 393 C 3 4 O GLN B 88 ? O GLN B 392 N GLY B 77 ? N GLY B 381 C 4 5 N PHE B 76 ? N PHE B 380 O LYS B 233 ? O LYS B 537 D 1 2 O ARG B 122 ? O ARG B 426 N GLU B 115 ? N GLU B 419 D 2 3 N LEU B 114 ? N LEU B 418 O PHE B 150 ? O PHE B 454 D 3 4 N VAL B 157 ? N VAL B 461 O CYS B 197 ? O CYS B 501 D 4 5 O VAL B 200 ? O VAL B 504 N LYS B 178 ? N LYS B 482 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 1 ? 6 'BINDING SITE FOR RESIDUE GOL A 1' AC2 Software A GOL 3 ? 3 'BINDING SITE FOR RESIDUE GOL A 3' AC3 Software B GOL 2 ? 6 'BINDING SITE FOR RESIDUE GOL B 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASN A 46 ? ASN A 350 . ? 1_555 ? 2 AC1 6 ALA A 92 ? ALA A 396 . ? 1_555 ? 3 AC1 6 TYR A 129 ? TYR A 433 . ? 1_555 ? 4 AC1 6 HIS A 137 ? HIS A 441 . ? 1_555 ? 5 AC1 6 ARG A 155 ? ARG A 459 . ? 1_555 ? 6 AC1 6 GLY A 204 ? GLY A 508 . ? 1_555 ? 7 AC2 3 LYS A 178 ? LYS A 482 . ? 1_555 ? 8 AC2 3 MSE A 202 ? MSE A 506 . ? 1_555 ? 9 AC2 3 TYR A 235 ? TYR A 539 . ? 4_555 ? 10 AC3 6 ASN B 46 ? ASN B 350 . ? 1_555 ? 11 AC3 6 ALA B 92 ? ALA B 396 . ? 1_555 ? 12 AC3 6 TYR B 129 ? TYR B 433 . ? 1_555 ? 13 AC3 6 HIS B 137 ? HIS B 441 . ? 1_555 ? 14 AC3 6 GLY B 204 ? GLY B 508 . ? 1_555 ? 15 AC3 6 ILE B 205 ? ILE B 509 . ? 1_555 ? # _atom_sites.entry_id 3NEK _atom_sites.fract_transf_matrix[1][1] 0.012499 _atom_sites.fract_transf_matrix[1][2] 0.007216 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014432 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008590 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 305 ? ? ? A . n A 1 2 LEU 2 306 ? ? ? A . n A 1 3 LYS 3 307 ? ? ? A . n A 1 4 LYS 4 308 ? ? ? A . n A 1 5 ASN 5 309 ? ? ? A . n A 1 6 PRO 6 310 ? ? ? A . n A 1 7 ARG 7 311 ? ? ? A . n A 1 8 ASP 8 312 ? ? ? A . n A 1 9 ILE 9 313 ? ? ? A . n A 1 10 VAL 10 314 ? ? ? A . n A 1 11 THR 11 315 ? ? ? A . n A 1 12 LYS 12 316 ? ? ? A . n A 1 13 LYS 13 317 ? ? ? A . n A 1 14 ALA 14 318 ? ? ? A . n A 1 15 ASN 15 319 ? ? ? A . n A 1 16 ILE 16 320 ? ? ? A . n A 1 17 ARG 17 321 321 ARG ARG A . n A 1 18 ILE 18 322 322 ILE ILE A . n A 1 19 LYS 19 323 323 LYS LYS A . n A 1 20 THR 20 324 324 THR THR A . n A 1 21 ALA 21 325 325 ALA ALA A . n A 1 22 LEU 22 326 326 LEU LEU A . n A 1 23 SER 23 327 327 SER SER A . n A 1 24 LYS 24 328 328 LYS LYS A . n A 1 25 MSE 25 329 329 MSE MSE A . n A 1 26 PHE 26 330 330 PHE PHE A . n A 1 27 ASN 27 331 331 ASN ASN A . n A 1 28 ALA 28 332 332 ALA ALA A . n A 1 29 MSE 29 333 333 MSE MSE A . n A 1 30 ALA 30 334 334 ALA ALA A . n A 1 31 LYS 31 335 335 LYS LYS A . n A 1 32 VAL 32 336 336 VAL VAL A . n A 1 33 THR 33 337 337 THR THR A . n A 1 34 TYR 34 338 338 TYR TYR A . n A 1 35 ASP 35 339 339 ASP ASP A . n A 1 36 ILE 36 340 340 ILE ILE A . n A 1 37 ASP 37 341 341 ASP ASP A . n A 1 38 GLU 38 342 342 GLU GLU A . n A 1 39 ALA 39 343 343 ALA ALA A . n A 1 40 ASP 40 344 344 ASP ASP A . n A 1 41 GLY 41 345 345 GLY GLY A . n A 1 42 ASP 42 346 346 ASP ASP A . n A 1 43 VAL 43 347 347 VAL VAL A . n A 1 44 ILE 44 348 348 ILE ILE A . n A 1 45 VAL 45 349 349 VAL VAL A . n A 1 46 ASN 46 350 350 ASN ASN A . n A 1 47 THR 47 351 351 THR THR A . n A 1 48 ALA 48 352 352 ALA ALA A . n A 1 49 PHE 49 353 353 PHE PHE A . n A 1 50 ILE 50 354 354 ILE ILE A . n A 1 51 ASP 51 355 355 ASP ASP A . n A 1 52 LYS 52 356 356 LYS LYS A . n A 1 53 LYS 53 357 357 LYS LYS A . n A 1 54 TYR 54 358 358 TYR TYR A . n A 1 55 LEU 55 359 359 LEU LEU A . n A 1 56 ASP 56 360 360 ASP ASP A . n A 1 57 GLU 57 361 361 GLU GLU A . n A 1 58 ALA 58 362 362 ALA ALA A . n A 1 59 PHE 59 363 363 PHE PHE A . n A 1 60 ASP 60 364 364 ASP ASP A . n A 1 61 ILE 61 365 365 ILE ILE A . n A 1 62 LEU 62 366 366 LEU LEU A . n A 1 63 LYS 63 367 367 LYS LYS A . n A 1 64 GLU 64 368 368 GLU GLU A . n A 1 65 ALA 65 369 369 ALA ALA A . n A 1 66 TYR 66 370 370 TYR TYR A . n A 1 67 LYS 67 371 371 LYS LYS A . n A 1 68 LYS 68 372 372 LYS LYS A . n A 1 69 GLY 69 373 373 GLY GLY A . n A 1 70 LEU 70 374 374 LEU LEU A . n A 1 71 GLY 71 375 375 GLY GLY A . n A 1 72 ILE 72 376 376 ILE ILE A . n A 1 73 SER 73 377 377 SER SER A . n A 1 74 ASP 74 378 378 ASP ASP A . n A 1 75 ARG 75 379 379 ARG ARG A . n A 1 76 PHE 76 380 380 PHE PHE A . n A 1 77 GLY 77 381 381 GLY GLY A . n A 1 78 ILE 78 382 382 ILE ILE A . n A 1 79 VAL 79 383 383 VAL VAL A . n A 1 80 GLU 80 384 384 GLU GLU A . n A 1 81 GLU 81 385 385 GLU GLU A . n A 1 82 ASN 82 386 386 ASN ASN A . n A 1 83 ASP 83 387 387 ASP ASP A . n A 1 84 ARG 84 388 388 ARG ARG A . n A 1 85 ILE 85 389 389 ILE ILE A . n A 1 86 LYS 86 390 390 LYS LYS A . n A 1 87 ILE 87 391 391 ILE ILE A . n A 1 88 GLN 88 392 392 GLN GLN A . n A 1 89 THR 89 393 393 THR THR A . n A 1 90 ILE 90 394 394 ILE ILE A . n A 1 91 CYS 91 395 395 CYS CYS A . n A 1 92 ALA 92 396 396 ALA ALA A . n A 1 93 VAL 93 397 397 VAL VAL A . n A 1 94 THR 94 398 398 THR THR A . n A 1 95 LEU 95 399 399 LEU LEU A . n A 1 96 ASP 96 400 400 ASP ASP A . n A 1 97 GLY 97 401 401 GLY GLY A . n A 1 98 ILE 98 402 402 ILE ILE A . n A 1 99 PHE 99 403 403 PHE PHE A . n A 1 100 LEU 100 404 404 LEU LEU A . n A 1 101 ARG 101 405 405 ARG ARG A . n A 1 102 ASN 102 406 406 ASN ASN A . n A 1 103 SER 103 407 407 SER SER A . n A 1 104 VAL 104 408 408 VAL VAL A . n A 1 105 PRO 105 409 409 PRO PRO A . n A 1 106 LEU 106 410 410 LEU LEU A . n A 1 107 ILE 107 411 411 ILE ILE A . n A 1 108 PRO 108 412 412 PRO PRO A . n A 1 109 LYS 109 413 413 LYS LYS A . n A 1 110 TYR 110 414 414 TYR TYR A . n A 1 111 GLY 111 415 415 GLY GLY A . n A 1 112 GLY 112 416 416 GLY GLY A . n A 1 113 ILE 113 417 417 ILE ILE A . n A 1 114 LEU 114 418 418 LEU LEU A . n A 1 115 GLU 115 419 419 GLU GLU A . n A 1 116 ILE 116 420 420 ILE ILE A . n A 1 117 THR 117 421 421 THR THR A . n A 1 118 GLU 118 422 422 GLU GLU A . n A 1 119 ASP 119 423 423 ASP ASP A . n A 1 120 LYS 120 424 424 LYS LYS A . n A 1 121 GLU 121 425 425 GLU GLU A . n A 1 122 ARG 122 426 426 ARG ARG A . n A 1 123 PHE 123 427 427 PHE PHE A . n A 1 124 ILE 124 428 428 ILE ILE A . n A 1 125 ASP 125 429 429 ASP ASP A . n A 1 126 ILE 126 430 430 ILE ILE A . n A 1 127 ILE 127 431 431 ILE ILE A . n A 1 128 GLY 128 432 432 GLY GLY A . n A 1 129 TYR 129 433 433 TYR TYR A . n A 1 130 ASP 130 434 434 ASP ASP A . n A 1 131 GLY 131 435 435 GLY GLY A . n A 1 132 SER 132 436 436 SER SER A . n A 1 133 SER 133 437 437 SER SER A . n A 1 134 LEU 134 438 438 LEU LEU A . n A 1 135 ASP 135 439 439 ASP ASP A . n A 1 136 PRO 136 440 440 PRO PRO A . n A 1 137 HIS 137 441 441 HIS HIS A . n A 1 138 GLU 138 442 442 GLU GLU A . n A 1 139 VAL 139 443 443 VAL VAL A . n A 1 140 PHE 140 444 444 PHE PHE A . n A 1 141 PHE 141 445 445 PHE PHE A . n A 1 142 ASN 142 446 446 ASN ASN A . n A 1 143 PHE 143 447 447 PHE PHE A . n A 1 144 VAL 144 448 448 VAL VAL A . n A 1 145 ASP 145 449 449 ASP ASP A . n A 1 146 CYS 146 450 450 CYS CYS A . n A 1 147 GLU 147 451 451 GLU GLU A . n A 1 148 LYS 148 452 452 LYS LYS A . n A 1 149 THR 149 453 453 THR THR A . n A 1 150 PHE 150 454 454 PHE PHE A . n A 1 151 LEU 151 455 455 LEU LEU A . n A 1 152 ALA 152 456 456 ALA ALA A . n A 1 153 GLY 153 457 457 GLY GLY A . n A 1 154 PHE 154 458 458 PHE PHE A . n A 1 155 ARG 155 459 459 ARG ARG A . n A 1 156 GLU 156 460 460 GLU GLU A . n A 1 157 VAL 157 461 461 VAL VAL A . n A 1 158 HIS 158 462 462 HIS HIS A . n A 1 159 ARG 159 463 463 ARG ARG A . n A 1 160 VAL 160 464 464 VAL VAL A . n A 1 161 ALA 161 465 465 ALA ALA A . n A 1 162 ARG 162 466 466 ARG ARG A . n A 1 163 GLU 163 467 467 GLU GLU A . n A 1 164 LYS 164 468 468 LYS LYS A . n A 1 165 LEU 165 469 469 LEU LEU A . n A 1 166 GLU 166 470 470 GLU GLU A . n A 1 167 GLU 167 471 471 GLU GLU A . n A 1 168 VAL 168 472 472 VAL VAL A . n A 1 169 LEU 169 473 473 LEU LEU A . n A 1 170 LYS 170 474 474 LYS LYS A . n A 1 171 LYS 171 475 475 LYS LYS A . n A 1 172 LEU 172 476 476 LEU LEU A . n A 1 173 ASN 173 477 477 ASN ASN A . n A 1 174 TRP 174 478 478 TRP TRP A . n A 1 175 ASN 175 479 479 ASN ASN A . n A 1 176 GLY 176 480 480 GLY GLY A . n A 1 177 ILE 177 481 481 ILE ILE A . n A 1 178 LYS 178 482 482 LYS LYS A . n A 1 179 ALA 179 483 483 ALA ALA A . n A 1 180 ILE 180 484 484 ILE ILE A . n A 1 181 GLY 181 485 485 GLY GLY A . n A 1 182 GLU 182 486 486 GLU GLU A . n A 1 183 PRO 183 487 487 PRO PRO A . n A 1 184 ASN 184 488 488 ASN ASN A . n A 1 185 ASN 185 489 489 ASN ASN A . n A 1 186 GLU 186 490 490 GLU GLU A . n A 1 187 LEU 187 491 491 LEU LEU A . n A 1 188 TYR 188 492 492 TYR TYR A . n A 1 189 GLY 189 493 493 GLY GLY A . n A 1 190 ILE 190 494 494 ILE ILE A . n A 1 191 GLY 191 495 495 GLY GLY A . n A 1 192 VAL 192 496 496 VAL VAL A . n A 1 193 ASN 193 497 497 ASN ASN A . n A 1 194 LYS 194 498 498 LYS LYS A . n A 1 195 ASP 195 499 499 ASP ASP A . n A 1 196 MSE 196 500 500 MSE MSE A . n A 1 197 CYS 197 501 501 CYS CYS A . n A 1 198 GLY 198 502 502 GLY GLY A . n A 1 199 VAL 199 503 503 VAL VAL A . n A 1 200 VAL 200 504 504 VAL VAL A . n A 1 201 THR 201 505 505 THR THR A . n A 1 202 MSE 202 506 506 MSE MSE A . n A 1 203 GLY 203 507 507 GLY GLY A . n A 1 204 GLY 204 508 508 GLY GLY A . n A 1 205 ILE 205 509 509 ILE ILE A . n A 1 206 ASN 206 510 510 ASN ASN A . n A 1 207 PRO 207 511 511 PRO PRO A . n A 1 208 LEU 208 512 512 LEU LEU A . n A 1 209 VAL 209 513 513 VAL VAL A . n A 1 210 LEU 210 514 514 LEU LEU A . n A 1 211 LEU 211 515 515 LEU LEU A . n A 1 212 LYS 212 516 516 LYS LYS A . n A 1 213 GLU 213 517 517 GLU GLU A . n A 1 214 ASN 214 518 518 ASN ASN A . n A 1 215 GLU 215 519 519 GLU GLU A . n A 1 216 ILE 216 520 520 ILE ILE A . n A 1 217 PRO 217 521 521 PRO PRO A . n A 1 218 ILE 218 522 522 ILE ILE A . n A 1 219 GLU 219 523 523 GLU GLU A . n A 1 220 LEU 220 524 524 LEU LEU A . n A 1 221 LYS 221 525 525 LYS LYS A . n A 1 222 ALA 222 526 526 ALA ALA A . n A 1 223 MSE 223 527 527 MSE MSE A . n A 1 224 HIS 224 528 528 HIS HIS A . n A 1 225 GLU 225 529 529 GLU GLU A . n A 1 226 VAL 226 530 530 VAL VAL A . n A 1 227 VAL 227 531 531 VAL VAL A . n A 1 228 ARG 228 532 532 ARG ARG A . n A 1 229 PHE 229 533 533 PHE PHE A . n A 1 230 SER 230 534 534 SER SER A . n A 1 231 ASP 231 535 535 ASP ASP A . n A 1 232 LEU 232 536 536 LEU LEU A . n A 1 233 LYS 233 537 537 LYS LYS A . n A 1 234 SER 234 538 538 SER SER A . n A 1 235 TYR 235 539 539 TYR TYR A . n A 1 236 LYS 236 540 540 LYS LYS A . n A 1 237 GLU 237 541 ? ? ? A . n A 1 238 ILE 238 542 ? ? ? A . n B 1 1 SER 1 305 ? ? ? B . n B 1 2 LEU 2 306 ? ? ? B . n B 1 3 LYS 3 307 ? ? ? B . n B 1 4 LYS 4 308 ? ? ? B . n B 1 5 ASN 5 309 ? ? ? B . n B 1 6 PRO 6 310 ? ? ? B . n B 1 7 ARG 7 311 ? ? ? B . n B 1 8 ASP 8 312 ? ? ? B . n B 1 9 ILE 9 313 ? ? ? B . n B 1 10 VAL 10 314 ? ? ? B . n B 1 11 THR 11 315 ? ? ? B . n B 1 12 LYS 12 316 ? ? ? B . n B 1 13 LYS 13 317 ? ? ? B . n B 1 14 ALA 14 318 ? ? ? B . n B 1 15 ASN 15 319 319 ASN ASN B . n B 1 16 ILE 16 320 320 ILE ILE B . n B 1 17 ARG 17 321 321 ARG ARG B . n B 1 18 ILE 18 322 322 ILE ILE B . n B 1 19 LYS 19 323 323 LYS LYS B . n B 1 20 THR 20 324 324 THR THR B . n B 1 21 ALA 21 325 325 ALA ALA B . n B 1 22 LEU 22 326 326 LEU LEU B . n B 1 23 SER 23 327 327 SER SER B . n B 1 24 LYS 24 328 328 LYS LYS B . n B 1 25 MSE 25 329 329 MSE MSE B . n B 1 26 PHE 26 330 330 PHE PHE B . n B 1 27 ASN 27 331 331 ASN ASN B . n B 1 28 ALA 28 332 332 ALA ALA B . n B 1 29 MSE 29 333 333 MSE MSE B . n B 1 30 ALA 30 334 334 ALA ALA B . n B 1 31 LYS 31 335 335 LYS LYS B . n B 1 32 VAL 32 336 336 VAL VAL B . n B 1 33 THR 33 337 337 THR THR B . n B 1 34 TYR 34 338 338 TYR TYR B . n B 1 35 ASP 35 339 339 ASP ASP B . n B 1 36 ILE 36 340 340 ILE ILE B . n B 1 37 ASP 37 341 341 ASP ASP B . n B 1 38 GLU 38 342 342 GLU GLU B . n B 1 39 ALA 39 343 343 ALA ALA B . n B 1 40 ASP 40 344 344 ASP ASP B . n B 1 41 GLY 41 345 345 GLY GLY B . n B 1 42 ASP 42 346 346 ASP ASP B . n B 1 43 VAL 43 347 347 VAL VAL B . n B 1 44 ILE 44 348 348 ILE ILE B . n B 1 45 VAL 45 349 349 VAL VAL B . n B 1 46 ASN 46 350 350 ASN ASN B . n B 1 47 THR 47 351 351 THR THR B . n B 1 48 ALA 48 352 352 ALA ALA B . n B 1 49 PHE 49 353 353 PHE PHE B . n B 1 50 ILE 50 354 354 ILE ILE B . n B 1 51 ASP 51 355 355 ASP ASP B . n B 1 52 LYS 52 356 356 LYS LYS B . n B 1 53 LYS 53 357 357 LYS LYS B . n B 1 54 TYR 54 358 358 TYR TYR B . n B 1 55 LEU 55 359 359 LEU LEU B . n B 1 56 ASP 56 360 360 ASP ASP B . n B 1 57 GLU 57 361 361 GLU GLU B . n B 1 58 ALA 58 362 362 ALA ALA B . n B 1 59 PHE 59 363 363 PHE PHE B . n B 1 60 ASP 60 364 364 ASP ASP B . n B 1 61 ILE 61 365 365 ILE ILE B . n B 1 62 LEU 62 366 366 LEU LEU B . n B 1 63 LYS 63 367 367 LYS LYS B . n B 1 64 GLU 64 368 368 GLU GLU B . n B 1 65 ALA 65 369 369 ALA ALA B . n B 1 66 TYR 66 370 370 TYR TYR B . n B 1 67 LYS 67 371 371 LYS LYS B . n B 1 68 LYS 68 372 372 LYS LYS B . n B 1 69 GLY 69 373 373 GLY GLY B . n B 1 70 LEU 70 374 374 LEU LEU B . n B 1 71 GLY 71 375 375 GLY GLY B . n B 1 72 ILE 72 376 376 ILE ILE B . n B 1 73 SER 73 377 377 SER SER B . n B 1 74 ASP 74 378 378 ASP ASP B . n B 1 75 ARG 75 379 379 ARG ARG B . n B 1 76 PHE 76 380 380 PHE PHE B . n B 1 77 GLY 77 381 381 GLY GLY B . n B 1 78 ILE 78 382 382 ILE ILE B . n B 1 79 VAL 79 383 383 VAL VAL B . n B 1 80 GLU 80 384 384 GLU GLU B . n B 1 81 GLU 81 385 385 GLU GLU B . n B 1 82 ASN 82 386 386 ASN ASN B . n B 1 83 ASP 83 387 387 ASP ASP B . n B 1 84 ARG 84 388 388 ARG ARG B . n B 1 85 ILE 85 389 389 ILE ILE B . n B 1 86 LYS 86 390 390 LYS LYS B . n B 1 87 ILE 87 391 391 ILE ILE B . n B 1 88 GLN 88 392 392 GLN GLN B . n B 1 89 THR 89 393 393 THR THR B . n B 1 90 ILE 90 394 394 ILE ILE B . n B 1 91 CYS 91 395 395 CYS CYS B . n B 1 92 ALA 92 396 396 ALA ALA B . n B 1 93 VAL 93 397 397 VAL VAL B . n B 1 94 THR 94 398 398 THR THR B . n B 1 95 LEU 95 399 399 LEU LEU B . n B 1 96 ASP 96 400 400 ASP ASP B . n B 1 97 GLY 97 401 401 GLY GLY B . n B 1 98 ILE 98 402 402 ILE ILE B . n B 1 99 PHE 99 403 403 PHE PHE B . n B 1 100 LEU 100 404 404 LEU LEU B . n B 1 101 ARG 101 405 405 ARG ARG B . n B 1 102 ASN 102 406 406 ASN ASN B . n B 1 103 SER 103 407 407 SER SER B . n B 1 104 VAL 104 408 408 VAL VAL B . n B 1 105 PRO 105 409 409 PRO PRO B . n B 1 106 LEU 106 410 410 LEU LEU B . n B 1 107 ILE 107 411 411 ILE ILE B . n B 1 108 PRO 108 412 412 PRO PRO B . n B 1 109 LYS 109 413 413 LYS LYS B . n B 1 110 TYR 110 414 414 TYR TYR B . n B 1 111 GLY 111 415 415 GLY GLY B . n B 1 112 GLY 112 416 416 GLY GLY B . n B 1 113 ILE 113 417 417 ILE ILE B . n B 1 114 LEU 114 418 418 LEU LEU B . n B 1 115 GLU 115 419 419 GLU GLU B . n B 1 116 ILE 116 420 420 ILE ILE B . n B 1 117 THR 117 421 421 THR THR B . n B 1 118 GLU 118 422 422 GLU GLU B . n B 1 119 ASP 119 423 423 ASP ASP B . n B 1 120 LYS 120 424 424 LYS LYS B . n B 1 121 GLU 121 425 425 GLU GLU B . n B 1 122 ARG 122 426 426 ARG ARG B . n B 1 123 PHE 123 427 427 PHE PHE B . n B 1 124 ILE 124 428 428 ILE ILE B . n B 1 125 ASP 125 429 429 ASP ASP B . n B 1 126 ILE 126 430 430 ILE ILE B . n B 1 127 ILE 127 431 431 ILE ILE B . n B 1 128 GLY 128 432 432 GLY GLY B . n B 1 129 TYR 129 433 433 TYR TYR B . n B 1 130 ASP 130 434 434 ASP ASP B . n B 1 131 GLY 131 435 435 GLY GLY B . n B 1 132 SER 132 436 436 SER SER B . n B 1 133 SER 133 437 437 SER SER B . n B 1 134 LEU 134 438 438 LEU LEU B . n B 1 135 ASP 135 439 439 ASP ASP B . n B 1 136 PRO 136 440 440 PRO PRO B . n B 1 137 HIS 137 441 441 HIS HIS B . n B 1 138 GLU 138 442 442 GLU GLU B . n B 1 139 VAL 139 443 443 VAL VAL B . n B 1 140 PHE 140 444 444 PHE PHE B . n B 1 141 PHE 141 445 445 PHE PHE B . n B 1 142 ASN 142 446 446 ASN ASN B . n B 1 143 PHE 143 447 447 PHE PHE B . n B 1 144 VAL 144 448 448 VAL VAL B . n B 1 145 ASP 145 449 449 ASP ASP B . n B 1 146 CYS 146 450 450 CYS CYS B . n B 1 147 GLU 147 451 451 GLU GLU B . n B 1 148 LYS 148 452 452 LYS LYS B . n B 1 149 THR 149 453 453 THR THR B . n B 1 150 PHE 150 454 454 PHE PHE B . n B 1 151 LEU 151 455 455 LEU LEU B . n B 1 152 ALA 152 456 456 ALA ALA B . n B 1 153 GLY 153 457 457 GLY GLY B . n B 1 154 PHE 154 458 458 PHE PHE B . n B 1 155 ARG 155 459 459 ARG ARG B . n B 1 156 GLU 156 460 460 GLU GLU B . n B 1 157 VAL 157 461 461 VAL VAL B . n B 1 158 HIS 158 462 462 HIS HIS B . n B 1 159 ARG 159 463 463 ARG ARG B . n B 1 160 VAL 160 464 464 VAL VAL B . n B 1 161 ALA 161 465 465 ALA ALA B . n B 1 162 ARG 162 466 466 ARG ARG B . n B 1 163 GLU 163 467 467 GLU GLU B . n B 1 164 LYS 164 468 468 LYS LYS B . n B 1 165 LEU 165 469 469 LEU LEU B . n B 1 166 GLU 166 470 470 GLU GLU B . n B 1 167 GLU 167 471 471 GLU GLU B . n B 1 168 VAL 168 472 472 VAL VAL B . n B 1 169 LEU 169 473 473 LEU LEU B . n B 1 170 LYS 170 474 474 LYS LYS B . n B 1 171 LYS 171 475 475 LYS LYS B . n B 1 172 LEU 172 476 476 LEU LEU B . n B 1 173 ASN 173 477 477 ASN ASN B . n B 1 174 TRP 174 478 478 TRP TRP B . n B 1 175 ASN 175 479 479 ASN ASN B . n B 1 176 GLY 176 480 480 GLY GLY B . n B 1 177 ILE 177 481 481 ILE ILE B . n B 1 178 LYS 178 482 482 LYS LYS B . n B 1 179 ALA 179 483 483 ALA ALA B . n B 1 180 ILE 180 484 484 ILE ILE B . n B 1 181 GLY 181 485 485 GLY GLY B . n B 1 182 GLU 182 486 486 GLU GLU B . n B 1 183 PRO 183 487 487 PRO PRO B . n B 1 184 ASN 184 488 488 ASN ASN B . n B 1 185 ASN 185 489 489 ASN ASN B . n B 1 186 GLU 186 490 490 GLU GLU B . n B 1 187 LEU 187 491 491 LEU LEU B . n B 1 188 TYR 188 492 492 TYR TYR B . n B 1 189 GLY 189 493 493 GLY GLY B . n B 1 190 ILE 190 494 494 ILE ILE B . n B 1 191 GLY 191 495 495 GLY GLY B . n B 1 192 VAL 192 496 496 VAL VAL B . n B 1 193 ASN 193 497 497 ASN ASN B . n B 1 194 LYS 194 498 498 LYS LYS B . n B 1 195 ASP 195 499 499 ASP ASP B . n B 1 196 MSE 196 500 500 MSE MSE B . n B 1 197 CYS 197 501 501 CYS CYS B . n B 1 198 GLY 198 502 502 GLY GLY B . n B 1 199 VAL 199 503 503 VAL VAL B . n B 1 200 VAL 200 504 504 VAL VAL B . n B 1 201 THR 201 505 505 THR THR B . n B 1 202 MSE 202 506 506 MSE MSE B . n B 1 203 GLY 203 507 507 GLY GLY B . n B 1 204 GLY 204 508 508 GLY GLY B . n B 1 205 ILE 205 509 509 ILE ILE B . n B 1 206 ASN 206 510 510 ASN ASN B . n B 1 207 PRO 207 511 511 PRO PRO B . n B 1 208 LEU 208 512 512 LEU LEU B . n B 1 209 VAL 209 513 513 VAL VAL B . n B 1 210 LEU 210 514 514 LEU LEU B . n B 1 211 LEU 211 515 515 LEU LEU B . n B 1 212 LYS 212 516 516 LYS LYS B . n B 1 213 GLU 213 517 517 GLU GLU B . n B 1 214 ASN 214 518 518 ASN ASN B . n B 1 215 GLU 215 519 519 GLU GLU B . n B 1 216 ILE 216 520 520 ILE ILE B . n B 1 217 PRO 217 521 521 PRO PRO B . n B 1 218 ILE 218 522 522 ILE ILE B . n B 1 219 GLU 219 523 523 GLU GLU B . n B 1 220 LEU 220 524 524 LEU LEU B . n B 1 221 LYS 221 525 525 LYS LYS B . n B 1 222 ALA 222 526 526 ALA ALA B . n B 1 223 MSE 223 527 527 MSE MSE B . n B 1 224 HIS 224 528 528 HIS HIS B . n B 1 225 GLU 225 529 529 GLU GLU B . n B 1 226 VAL 226 530 530 VAL VAL B . n B 1 227 VAL 227 531 531 VAL VAL B . n B 1 228 ARG 228 532 532 ARG ARG B . n B 1 229 PHE 229 533 533 PHE PHE B . n B 1 230 SER 230 534 534 SER SER B . n B 1 231 ASP 231 535 535 ASP ASP B . n B 1 232 LEU 232 536 536 LEU LEU B . n B 1 233 LYS 233 537 537 LYS LYS B . n B 1 234 SER 234 538 538 SER SER B . n B 1 235 TYR 235 539 539 TYR TYR B . n B 1 236 LYS 236 540 ? ? ? B . n B 1 237 GLU 237 541 ? ? ? B . n B 1 238 ILE 238 542 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL 1 1 1 GOL GOL A . D 2 GOL 1 3 3 GOL GOL A . E 2 GOL 1 2 2 GOL GOL B . F 3 HOH 1 2 2 HOH HOH A . F 3 HOH 2 4 4 HOH HOH A . F 3 HOH 3 6 6 HOH HOH A . F 3 HOH 4 10 10 HOH HOH A . F 3 HOH 5 11 11 HOH HOH A . F 3 HOH 6 13 13 HOH HOH A . F 3 HOH 7 14 14 HOH HOH A . F 3 HOH 8 543 1 HOH HOH A . F 3 HOH 9 544 3 HOH HOH A . G 3 HOH 1 5 5 HOH HOH B . G 3 HOH 2 7 7 HOH HOH B . G 3 HOH 3 8 8 HOH HOH B . G 3 HOH 4 9 9 HOH HOH B . G 3 HOH 5 12 12 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 25 A MSE 329 ? MET SELENOMETHIONINE 2 A MSE 29 A MSE 333 ? MET SELENOMETHIONINE 3 A MSE 196 A MSE 500 ? MET SELENOMETHIONINE 4 A MSE 202 A MSE 506 ? MET SELENOMETHIONINE 5 A MSE 223 A MSE 527 ? MET SELENOMETHIONINE 6 B MSE 25 B MSE 329 ? MET SELENOMETHIONINE 7 B MSE 29 B MSE 333 ? MET SELENOMETHIONINE 8 B MSE 196 B MSE 500 ? MET SELENOMETHIONINE 9 B MSE 202 B MSE 506 ? MET SELENOMETHIONINE 10 B MSE 223 B MSE 527 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2500 ? 1 MORE -6 ? 1 'SSA (A^2)' 20490 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2018-11-21 5 'Structure model' 1 4 2021-02-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Structure summary' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' audit_author 3 5 'Structure model' audit_author 4 5 'Structure model' citation_author 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_audit_author.identifier_ORCID' 2 5 'Structure model' '_audit_author.identifier_ORCID' 3 5 'Structure model' '_citation_author.identifier_ORCID' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -18.7090 -19.5580 -13.4080 0.0033 0.0263 0.2191 0.0339 -0.0532 -0.0011 2.6418 1.6964 3.3975 -0.4923 -1.1941 -0.1881 -0.0746 0.0937 -0.0191 -0.1428 0.0344 0.1400 0.0136 0.1534 0.1517 'X-RAY DIFFRACTION' 2 ? refined -6.1780 -28.4600 -44.8110 -0.0218 0.0479 0.2294 -0.0236 0.0180 0.0281 3.2163 2.7040 2.0329 0.1227 -0.0054 0.5681 -0.0976 -0.0018 0.0993 0.2161 -0.1822 -0.1553 -0.1367 -0.0149 0.0364 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 321 A 540 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 319 B 539 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.100 'May. 21, 2010' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 SHELXCD . ? ? ? ? phasing ? ? ? 7 SHELXE . ? ? ? ? 'model building' ? ? ? 8 RESOLVE . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 377 ? ? 67.62 171.63 2 1 ASP A 387 ? ? -145.49 -25.46 3 1 GLU A 451 ? ? -137.49 -46.21 4 1 SER B 377 ? ? 74.72 -172.17 5 1 THR B 421 ? ? -115.80 -159.74 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 305 ? A SER 1 2 1 Y 1 A LEU 306 ? A LEU 2 3 1 Y 1 A LYS 307 ? A LYS 3 4 1 Y 1 A LYS 308 ? A LYS 4 5 1 Y 1 A ASN 309 ? A ASN 5 6 1 Y 1 A PRO 310 ? A PRO 6 7 1 Y 1 A ARG 311 ? A ARG 7 8 1 Y 1 A ASP 312 ? A ASP 8 9 1 Y 1 A ILE 313 ? A ILE 9 10 1 Y 1 A VAL 314 ? A VAL 10 11 1 Y 1 A THR 315 ? A THR 11 12 1 Y 1 A LYS 316 ? A LYS 12 13 1 Y 1 A LYS 317 ? A LYS 13 14 1 Y 1 A ALA 318 ? A ALA 14 15 1 Y 1 A ASN 319 ? A ASN 15 16 1 Y 1 A ILE 320 ? A ILE 16 17 1 Y 1 A GLU 541 ? A GLU 237 18 1 Y 1 A ILE 542 ? A ILE 238 19 1 Y 1 B SER 305 ? B SER 1 20 1 Y 1 B LEU 306 ? B LEU 2 21 1 Y 1 B LYS 307 ? B LYS 3 22 1 Y 1 B LYS 308 ? B LYS 4 23 1 Y 1 B ASN 309 ? B ASN 5 24 1 Y 1 B PRO 310 ? B PRO 6 25 1 Y 1 B ARG 311 ? B ARG 7 26 1 Y 1 B ASP 312 ? B ASP 8 27 1 Y 1 B ILE 313 ? B ILE 9 28 1 Y 1 B VAL 314 ? B VAL 10 29 1 Y 1 B THR 315 ? B THR 11 30 1 Y 1 B LYS 316 ? B LYS 12 31 1 Y 1 B LYS 317 ? B LYS 13 32 1 Y 1 B ALA 318 ? B ALA 14 33 1 Y 1 B LYS 540 ? B LYS 236 34 1 Y 1 B GLU 541 ? B GLU 237 35 1 Y 1 B ILE 542 ? B ILE 238 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH #