HEADER PROTEIN BINDING 10-JUN-10 3NFK TITLE CRYSTAL STRUCTURE OF THE PTPN4 PDZ DOMAIN COMPLEXED WITH THE C- TITLE 2 TERMINUS OF A RABIES VIRUS G PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PDZ DOMAIN (UNP RESIDUES 499-604); COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE MEG1, PTPASE-MEG1, MEG; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GLYCOPROTEIN G; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 512-524; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST15; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: RABIES VIRUS; SOURCE 14 ORGANISM_TAXID: 11292; SOURCE 15 OTHER_DETAILS: CYTO13-ATT PEPTIDE HAS BEEN CHEMICALLY SYNTHETIZED. SOURCE 16 THE SEQUENCE OCCURS NATURALLY IN RABIES VIRUS G PROTEIN KEYWDS PDZ-PDZ-BINDING SITE COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR N.BABAULT,F.CORDIER,M.LAFAGE,J.COCKBURN,A.HAOUZ,F.A.REY,M.DELEPIERRE, AUTHOR 2 H.BUC,M.LAFON,N.WOLFF REVDAT 3 06-SEP-23 3NFK 1 REMARK SEQADV REVDAT 2 30-NOV-11 3NFK 1 JRNL REVDAT 1 24-AUG-11 3NFK 0 JRNL AUTH N.BABAULT,F.CORDIER,M.LAFAGE,J.COCKBURN,A.HAOUZ,C.PREHAUD, JRNL AUTH 2 F.A.REY,M.DELEPIERRE,H.BUC,M.LAFON,N.WOLFF JRNL TITL PEPTIDES TARGETING THE PDZ DOMAIN OF PTPN4 ARE EFFICIENT JRNL TITL 2 INDUCERS OF GLIOBLASTOMA CELL DEATH. JRNL REF STRUCTURE V. 19 1518 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 22000519 JRNL DOI 10.1016/J.STR.2011.07.007 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 42710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2155 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.47 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.70 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3160 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1876 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3001 REMARK 3 BIN R VALUE (WORKING SET) : 0.1853 REMARK 3 BIN FREE R VALUE : 0.2333 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.03 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 159 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1548 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.22030 REMARK 3 B22 (A**2) : 0.75720 REMARK 3 B33 (A**2) : 0.46310 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.175 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.062 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1600 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 2160 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 579 ; 2.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 47 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 232 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 1600 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 201 ; 5.000 ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1976 ; 4.000 ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.14 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.10 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.85 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|513 - A|604 } REMARK 3 ORIGIN FOR THE GROUP (A): 33.1435 -18.5056 15.3124 REMARK 3 T TENSOR REMARK 3 T11: -0.0748 T22: -0.0464 REMARK 3 T33: -0.0379 T12: 0.0017 REMARK 3 T13: -0.0011 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.0555 L22: 1.2897 REMARK 3 L33: 0.6118 L12: 0.0333 REMARK 3 L13: -0.0672 L23: -0.0627 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: 0.0209 S13: 0.0121 REMARK 3 S21: -0.0172 S22: 0.0061 S23: -0.1331 REMARK 3 S31: 0.0005 S32: 0.0419 S33: -0.0003 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { C|1 - C|13 } REMARK 3 ORIGIN FOR THE GROUP (A): 24.4260 -9.4236 18.0277 REMARK 3 T TENSOR REMARK 3 T11: -0.0200 T22: -0.0039 REMARK 3 T33: 0.0056 T12: -0.0048 REMARK 3 T13: -0.0143 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 2.1534 L22: 3.4346 REMARK 3 L33: 1.7466 L12: -0.8889 REMARK 3 L13: -1.1209 L23: -0.2264 REMARK 3 S TENSOR REMARK 3 S11: 0.0393 S12: 0.1537 S13: 0.0018 REMARK 3 S21: -0.1086 S22: -0.0241 S23: 0.2286 REMARK 3 S31: 0.0717 S32: -0.1022 S33: -0.0152 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|512 - B|591 B|594 - B|604 } REMARK 3 ORIGIN FOR THE GROUP (A): 27.3935 -1.7889 -5.2299 REMARK 3 T TENSOR REMARK 3 T11: -0.0365 T22: 0.0188 REMARK 3 T33: -0.0154 T12: -0.0055 REMARK 3 T13: -0.0006 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 1.4659 L22: 3.2971 REMARK 3 L33: 1.8874 L12: -1.3715 REMARK 3 L13: 0.2031 L23: -1.0075 REMARK 3 S TENSOR REMARK 3 S11: -0.0566 S12: -0.0667 S13: 0.0731 REMARK 3 S21: 0.0211 S22: 0.1581 S23: 0.0588 REMARK 3 S31: -0.1304 S32: -0.1310 S33: -0.1014 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|9 - D|13 } REMARK 3 ORIGIN FOR THE GROUP (A): 34.6610 1.0037 2.3660 REMARK 3 T TENSOR REMARK 3 T11: 0.0233 T22: 0.0082 REMARK 3 T33: -0.0320 T12: 0.0300 REMARK 3 T13: -0.0207 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.0207 L22: 0.0000 REMARK 3 L33: 0.3054 L12: 0.3334 REMARK 3 L13: -0.8913 L23: -0.1162 REMARK 3 S TENSOR REMARK 3 S11: -0.0160 S12: -0.0145 S13: 0.0308 REMARK 3 S21: 0.0268 S22: -0.0158 S23: -0.0154 REMARK 3 S31: -0.0331 S32: 0.0132 S33: 0.0318 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NFK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059766. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : BI-MORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42795 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 34.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.30100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VPH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 1500, 20% GLYCEROL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.71500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.90000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.90000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.71500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 -1.000000 0.000000 0.000000 53.43000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 -26.85000 REMARK 350 BIOMT3 1 0.000000 0.000000 -1.000000 40.90000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 498 REMARK 465 SER A 499 REMARK 465 SER A 500 REMARK 465 PRO A 501 REMARK 465 GLU A 502 REMARK 465 LYS A 503 REMARK 465 PRO A 504 REMARK 465 THR A 505 REMARK 465 PRO A 506 REMARK 465 ASN A 507 REMARK 465 GLY A 508 REMARK 465 GLY A 509 REMARK 465 ILE A 510 REMARK 465 PRO A 511 REMARK 465 HIS A 512 REMARK 465 GLY B 498 REMARK 465 SER B 499 REMARK 465 SER B 500 REMARK 465 PRO B 501 REMARK 465 GLU B 502 REMARK 465 LYS B 503 REMARK 465 PRO B 504 REMARK 465 THR B 505 REMARK 465 PRO B 506 REMARK 465 ASN B 507 REMARK 465 GLY B 508 REMARK 465 GLY B 509 REMARK 465 ILE B 510 REMARK 465 PRO B 511 REMARK 465 ARG B 592 REMARK 465 HIS B 593 REMARK 465 SER D 1 REMARK 465 TRP D 2 REMARK 465 GLU D 3 REMARK 465 SER D 4 REMARK 465 HIS D 5 REMARK 465 LYS D 6 REMARK 465 SER D 7 REMARK 465 GLY D 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 593 CG ND1 CD2 CE1 NE2 REMARK 470 TYR B 536 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET B 598 CG SD CE REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VPH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PTPN4-PDZ REMARK 900 RELATED ID: 2CS5 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF PTPN4-PDZ REMARK 900 RELATED ID: 3NFL RELATED DB: PDB DBREF 3NFK A 499 604 UNP P29074 PTN4_HUMAN 499 604 DBREF 3NFK B 499 604 UNP P29074 PTN4_HUMAN 499 604 DBREF 3NFK C 1 13 UNP P03524 VGLG_RABVE 512 524 DBREF 3NFK D 1 13 UNP P03524 VGLG_RABVE 512 524 SEQADV 3NFK GLY A 498 UNP P29074 EXPRESSION TAG SEQADV 3NFK GLY B 498 UNP P29074 EXPRESSION TAG SEQRES 1 A 107 GLY SER SER PRO GLU LYS PRO THR PRO ASN GLY GLY ILE SEQRES 2 A 107 PRO HIS ASP ASN LEU VAL LEU ILE ARG MET LYS PRO ASP SEQRES 3 A 107 GLU ASN GLY ARG PHE GLY PHE ASN VAL LYS GLY GLY TYR SEQRES 4 A 107 ASP GLN LYS MET PRO VAL ILE VAL SER ARG VAL ALA PRO SEQRES 5 A 107 GLY THR PRO ALA ASP LEU CYS VAL PRO ARG LEU ASN GLU SEQRES 6 A 107 GLY ASP GLN VAL VAL LEU ILE ASN GLY ARG ASP ILE ALA SEQRES 7 A 107 GLU HIS THR HIS ASP GLN VAL VAL LEU PHE ILE LYS ALA SEQRES 8 A 107 SER CYS GLU ARG HIS SER GLY GLU LEU MET LEU LEU VAL SEQRES 9 A 107 ARG PRO ASN SEQRES 1 B 107 GLY SER SER PRO GLU LYS PRO THR PRO ASN GLY GLY ILE SEQRES 2 B 107 PRO HIS ASP ASN LEU VAL LEU ILE ARG MET LYS PRO ASP SEQRES 3 B 107 GLU ASN GLY ARG PHE GLY PHE ASN VAL LYS GLY GLY TYR SEQRES 4 B 107 ASP GLN LYS MET PRO VAL ILE VAL SER ARG VAL ALA PRO SEQRES 5 B 107 GLY THR PRO ALA ASP LEU CYS VAL PRO ARG LEU ASN GLU SEQRES 6 B 107 GLY ASP GLN VAL VAL LEU ILE ASN GLY ARG ASP ILE ALA SEQRES 7 B 107 GLU HIS THR HIS ASP GLN VAL VAL LEU PHE ILE LYS ALA SEQRES 8 B 107 SER CYS GLU ARG HIS SER GLY GLU LEU MET LEU LEU VAL SEQRES 9 B 107 ARG PRO ASN SEQRES 1 C 13 SER TRP GLU SER HIS LYS SER GLY GLY GLU THR ARG LEU SEQRES 1 D 13 SER TRP GLU SER HIS LYS SER GLY GLY GLU THR ARG LEU HET GOL A 1 6 HET GOL A 605 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *181(H2 O) HELIX 1 1 TYR A 536 LYS A 539 5 4 HELIX 2 2 THR A 551 CYS A 556 1 6 HELIX 3 3 THR A 578 ALA A 588 1 11 HELIX 4 4 SER A 589 ARG A 592 5 4 HELIX 5 5 TYR B 536 LYS B 539 5 4 HELIX 6 6 THR B 551 CYS B 556 1 6 HELIX 7 7 THR B 578 ALA B 588 1 11 SHEET 1 A 4 VAL A 516 MET A 520 0 SHEET 2 A 4 LEU A 597 ARG A 602 -1 O LEU A 599 N ILE A 518 SHEET 3 A 4 GLN A 565 ILE A 569 -1 N VAL A 567 O LEU A 600 SHEET 4 A 4 ARG A 572 ASP A 573 -1 O ARG A 572 N ILE A 569 SHEET 1 B 4 MET A 540 VAL A 547 0 SHEET 2 B 4 PHE A 530 GLY A 535 -1 N GLY A 535 O MET A 540 SHEET 3 B 4 GLU C 10 ARG C 12 -1 O THR C 11 N VAL A 532 SHEET 4 B 4 LYS C 6 SER C 7 -1 N SER C 7 O GLU C 10 SHEET 1 C 4 VAL B 516 MET B 520 0 SHEET 2 C 4 LEU B 597 ARG B 602 -1 O LEU B 599 N ILE B 518 SHEET 3 C 4 GLN B 565 ILE B 569 -1 N VAL B 567 O LEU B 600 SHEET 4 C 4 ARG B 572 ASP B 573 -1 O ARG B 572 N ILE B 569 SHEET 1 D 3 MET B 540 VAL B 547 0 SHEET 2 D 3 PHE B 530 GLY B 535 -1 N GLY B 535 O MET B 540 SHEET 3 D 3 GLU D 10 ARG D 12 -1 O THR D 11 N VAL B 532 SSBOND 1 CYS A 590 CYS B 590 1555 1555 2.08 CISPEP 1 VAL A 557 PRO A 558 0 -11.94 CISPEP 2 VAL B 557 PRO B 558 0 1.24 SITE 1 AC1 6 HOH A 61 HOH A 315 ASP A 537 PRO A 549 SITE 2 AC1 6 GLY A 550 ASP B 554 SITE 1 AC2 9 HOH A 23 HOH A 28 VAL A 547 ARG A 559 SITE 2 AC2 9 GLU A 562 ASP A 580 ASP B 580 TRP C 2 SITE 3 AC2 9 HOH C 53 CRYST1 53.430 53.700 81.800 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018716 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018622 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012225 0.00000