data_3NIR # _entry.id 3NIR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NIR pdb_00003nir 10.2210/pdb3nir/pdb RCSB RCSB059880 ? ? WWPDB D_1000059880 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1EJG 'CRAMBIN TO 0.54 A RESOLUTION' unspecified PDB 1CRN 'CRAMBIN AT ROOM TEMPERATURE' unspecified PDB 1CNR 'CRAMBIN, PURE P22/ L25 FORM' unspecified PDB 1CBN 'CRAMBIN TO 0.83 A RESOLUTION' unspecified PDB 1AB1 'CRAMBIN, PURE S22 / I25 FORM' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3NIR _pdbx_database_status.recvd_initial_deposition_date 2010-06-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Schmidt, A.' 1 ? 'Teeter, M.' 2 ? 'Weckert, E.' 3 ? 'Lamzin, V.S.' 4 ? # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structure of small protein crambin at 0.48 A resolution' 'Acta Crystallogr.,Sect.F' 67 424 429 2011 ? DK 1744-3091 ? ? 21505232 10.1107/S1744309110052607 1 'Accurate protein crystallography at ultra-high resolution: valence electron distribution in crambin.' Proc.Natl.Acad.Sci.USA 97 3171 3176 2000 PNASA6 US 0027-8424 0040 ? 10737790 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schmidt, A.' 1 ? primary 'Teeter, M.' 2 ? primary 'Weckert, E.' 3 ? primary 'Lamzin, V.S.' 4 ? 1 'Jelsch, C.' 5 ? 1 'Teeter, M.M.' 6 ? 1 'Lamzin, V.S.' 7 ? 1 'Pichon-Pesme, V.' 8 ? 1 'Blessing, R.H.' 9 ? 1 'Lecomte, C.' 10 ? # _cell.entry_id 3NIR _cell.length_a 22.329 _cell.length_b 18.471 _cell.length_c 40.769 _cell.angle_alpha 90.00 _cell.angle_beta 90.55 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NIR _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Crambin 4738.447 1 ? ? ? ? 2 non-polymer syn ETHANOL 46.068 4 ? ? ? ? 3 water nat water 18.015 98 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code TTCCPSIVARSNFNVCRLPGTPEALCATYTGCIIIPGATCPGDYAN _entity_poly.pdbx_seq_one_letter_code_can TTCCPSIVARSNFNVCRLPGTPEALCATYTGCIIIPGATCPGDYAN _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 THR n 1 3 CYS n 1 4 CYS n 1 5 PRO n 1 6 SER n 1 7 ILE n 1 8 VAL n 1 9 ALA n 1 10 ARG n 1 11 SER n 1 12 ASN n 1 13 PHE n 1 14 ASN n 1 15 VAL n 1 16 CYS n 1 17 ARG n 1 18 LEU n 1 19 PRO n 1 20 GLY n 1 21 THR n 1 22 PRO y 1 22 SER y 1 23 GLU n 1 24 ALA n 1 25 LEU y 1 25 ILE y 1 26 CYS n 1 27 ALA n 1 28 THR n 1 29 TYR n 1 30 THR n 1 31 GLY n 1 32 CYS n 1 33 ILE n 1 34 ILE n 1 35 ILE n 1 36 PRO n 1 37 GLY n 1 38 ALA n 1 39 THR n 1 40 CYS n 1 41 PRO n 1 42 GLY n 1 43 ASP n 1 44 TYR n 1 45 ALA n 1 46 ASN n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'Abyssinian crambe, Abyssinian kale' _entity_src_nat.pdbx_organism_scientific 'Crambe hispanica' _entity_src_nat.pdbx_ncbi_taxonomy_id 3721 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain 'SUBSP. ABYSSINICA' _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CRAM_CRAAB _struct_ref.pdbx_db_accession P01542 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code TTCCPSIVARSNFNVCRLPGTPEALCATYTGCIIIPGATCPGDYAN _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3NIR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 46 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P01542 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 46 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 46 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3NIR SER A 22 ? UNP P01542 PRO 22 microheterogeneity 22 1 1 3NIR ILE A 25 ? UNP P01542 LEU 25 microheterogeneity 25 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EOH non-polymer . ETHANOL ? 'C2 H6 O' 46.068 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3NIR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 3 # loop_ _exptl_crystal.id _exptl_crystal.density_meas _exptl_crystal.density_Matthews _exptl_crystal.density_percent_sol _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.preparation 1 ? 1.77 30.67 ? ? ? 2 ? ? ? ? ? ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details '60% ethanol in water, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 2 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'MAR CCD 165 mm' 2001-07-05 ? 2 CCD 'MAR CCD 165 mm' 2002-02-25 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'diamond (111) - germanium (220)' 'SINGLE WAVELENGTH' x-ray 2 2 M 'diamond (111) - germanium (220)' 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.5498 1.0 2 0.5636 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'PETRA II, DESY BEAMLINE PETRA1' 'PETRA II, DESY' PETRA1 ? 0.5498 2 SYNCHROTRON 'PETRA II, DESY BEAMLINE PETRA1' 'PETRA II, DESY' PETRA1 ? 0.5636 # _reflns.entry_id 3NIR _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20 _reflns.d_resolution_high 0.48 _reflns.number_obs 156860 _reflns.number_all 156860 _reflns.percent_possible_obs 97 _reflns.pdbx_Rsym_value 0.075 _reflns.pdbx_netI_over_sigmaI 9.7 _reflns.B_iso_Wilson_estimate 2.14 _reflns.pdbx_redundancy 3.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 0.48 _reflns_shell.d_res_low 0.49 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.5 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3NIR _refine.ls_number_reflns_obs 156860 _refine.ls_number_reflns_all 156860 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 0.48 _refine.ls_percent_reflns_obs 97 _refine.ls_R_factor_obs 0.127 _refine.ls_R_factor_R_work 0.127 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 4.12 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'RFREE INITIALLY, FINAL STAGES NONE' _refine.details ;INITIAL REFINEMENT WITH REFMAC THEN SHELX, THEN MOPRO FOR MULTIPOLE REFINEMENT. ONLY DURING REFMAC CROSS VALIDATION WITH RFREE. IN THE LAST STAGES OF REFINEMENT THE SUM OF OCCUPANCIES FOR THE MULTIPLE CONFORMERS WAS NOT CONSTRAINED TO 1.00 AND ONLY WEAK STEREOCHEMICAL RESTRAINTS WERE APPLIED. ALTHOUGH OVERALL SUCH REFINEMENT OF THE MULTIPLE CONFORMERS WENT FINE, THERE WAS SOME INSTABILITY - FOR EXAMPLE THE REFINEMENT OF THE TEMPERATURE FACTORS FOR CA AND C ATOMS OF THE THIRD CONFORMER OF TYR A 29 DID NOT CONVERGE AND WERE TRUNCATED TO THE VALUE OF 50. BULK SOLVENT MODELING METHOD USED:BULK SOLVENT ENVELOPE METHOD FC(MOL)+FC(BULK) ; _refine.pdbx_starting_model 'PDB entry 1EJG' _refine.pdbx_method_to_determine_struct 'ISOMORPHOUS TO PDB ENTRY 1EJG' _refine.pdbx_isotropic_thermal_model overall _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_R_factor_all ? _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 341 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 98 _refine_hist.number_atoms_total 451 _refine_hist.d_res_high 0.48 _refine_hist.d_res_low 20 # _struct.entry_id 3NIR _struct.title 'Crystal structure of small protein crambin at 0.48 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NIR _struct_keywords.pdbx_keywords 'PLANT PROTEIN' _struct_keywords.text 'plant protein' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id SER _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 6 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 18 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id SER _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 6 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 18 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 40 SG ? ? A CYS 3 A CYS 40 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf2 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 32 SG ? ? A CYS 4 A CYS 32 1_555 ? ? ? ? ? ? ? 2.046 ? ? disulf3 disulf ? ? A CYS 16 SG ? ? ? 1_555 A CYS 26 SG ? ? A CYS 16 A CYS 26 1_555 ? ? ? ? ? ? ? 2.037 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 2 ? CYS A 3 ? THR A 2 CYS A 3 A 2 ILE A 33 ? ILE A 34 ? ILE A 33 ILE A 34 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id CYS _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 3 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id CYS _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 3 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ILE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 33 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 33 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EOH 2001 ? 8 'BINDING SITE FOR RESIDUE EOH A 2001' AC2 Software A EOH 2002 ? 10 'BINDING SITE FOR RESIDUE EOH A 2002' AC3 Software A EOH 2003 ? 3 'BINDING SITE FOR RESIDUE EOH A 2003' AC4 Software A EOH 2004 ? 7 'BINDING SITE FOR RESIDUE EOH A 2004' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ALA A 45 ? ALA A 45 . ? 1_555 ? 2 AC1 8 ASN A 46 ? ASN A 46 . ? 1_555 ? 3 AC1 8 EOH E . ? EOH A 2004 . ? 1_655 ? 4 AC1 8 HOH F . ? HOH A 3006 . ? 1_555 ? 5 AC1 8 HOH F . ? HOH A 3027 . ? 1_555 ? 6 AC1 8 HOH F . ? HOH A 3038 . ? 1_555 ? 7 AC1 8 HOH F . ? HOH A 3087 . ? 1_555 ? 8 AC1 8 HOH F . ? HOH A 3091 . ? 1_565 ? 9 AC2 10 ILE A 7 ? ILE A 7 . ? 1_555 ? 10 AC2 10 VAL A 8 ? VAL A 8 . ? 1_555 ? 11 AC2 10 SER A 11 ? SER A 11 . ? 1_555 ? 12 AC2 10 ALA A 27 ? ALA A 27 . ? 1_565 ? 13 AC2 10 GLY A 31 ? GLY A 31 . ? 1_565 ? 14 AC2 10 CYS A 32 ? CYS A 32 . ? 1_565 ? 15 AC2 10 ILE A 33 ? ILE A 33 . ? 1_565 ? 16 AC2 10 HOH F . ? HOH A 3002 . ? 1_565 ? 17 AC2 10 HOH F . ? HOH A 3068 . ? 1_565 ? 18 AC2 10 HOH F . ? HOH A 3102 . ? 1_565 ? 19 AC3 3 ILE A 7 ? ILE A 7 . ? 1_555 ? 20 AC3 3 ASN A 46 ? ASN A 46 . ? 1_555 ? 21 AC3 3 HOH F . ? HOH A 3063 . ? 1_555 ? 22 AC4 7 ASN A 14 ? ASN A 14 . ? 1_555 ? 23 AC4 7 LEU A 18 ? LEU A 18 . ? 1_555 ? 24 AC4 7 EOH B . ? EOH A 2001 . ? 1_455 ? 25 AC4 7 HOH F . ? HOH A 3011 . ? 1_455 ? 26 AC4 7 HOH F . ? HOH A 3020 . ? 1_555 ? 27 AC4 7 HOH F . ? HOH A 3023 . ? 1_565 ? 28 AC4 7 HOH F . ? HOH A 3085 . ? 1_455 ? # _database_PDB_matrix.entry_id 3NIR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3NIR _atom_sites.fract_transf_matrix[1][1] 0.044785 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000430 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.054139 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024530 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 CYS 3 3 3 CYS CYS A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 CYS 16 16 16 CYS CYS A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 PRO 22 22 22 PRO PRO A . y A 1 22 SER 22 22 22 SER SER A . y A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 LEU 25 25 25 LEU LEU A . y A 1 25 ILE 25 25 25 ILE ILE A . y A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 CYS 32 32 32 CYS CYS A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 CYS 40 40 40 CYS CYS A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 ASN 46 46 46 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EOH 1 2001 2001 EOH EOH A . C 2 EOH 1 2002 2002 EOH EOH A . D 2 EOH 1 2003 2003 EOH EOH A . E 2 EOH 1 2004 2004 EOH EOH A . F 3 HOH 1 3001 3001 HOH HOH A . F 3 HOH 2 3002 3002 HOH HOH A . F 3 HOH 3 3003 3003 HOH HOH A . F 3 HOH 4 3004 3004 HOH HOH A . F 3 HOH 5 3005 3005 HOH HOH A . F 3 HOH 6 3006 3006 HOH HOH A . F 3 HOH 7 3007 3007 HOH HOH A . F 3 HOH 8 3008 3008 HOH HOH A . F 3 HOH 9 3009 3009 HOH HOH A . F 3 HOH 10 3010 3010 HOH HOH A . F 3 HOH 11 3011 3011 HOH HOH A . F 3 HOH 12 3013 3013 HOH HOH A . F 3 HOH 13 3014 3014 HOH HOH A . F 3 HOH 14 3015 3015 HOH HOH A . F 3 HOH 15 3016 3016 HOH HOH A . F 3 HOH 16 3017 3017 HOH HOH A . F 3 HOH 17 3018 3018 HOH HOH A . F 3 HOH 18 3019 3019 HOH HOH A . F 3 HOH 19 3020 3020 HOH HOH A . F 3 HOH 20 3021 3021 HOH HOH A . F 3 HOH 21 3022 3022 HOH HOH A . F 3 HOH 22 3023 3023 HOH HOH A . F 3 HOH 23 3024 3024 HOH HOH A . F 3 HOH 24 3025 3025 HOH HOH A . F 3 HOH 25 3027 3027 HOH HOH A . F 3 HOH 26 3028 3028 HOH HOH A . F 3 HOH 27 3030 3030 HOH HOH A . F 3 HOH 28 3031 3031 HOH HOH A . F 3 HOH 29 3032 3032 HOH HOH A . F 3 HOH 30 3033 3033 HOH HOH A . F 3 HOH 31 3035 3035 HOH HOH A . F 3 HOH 32 3036 3036 HOH HOH A . F 3 HOH 33 3038 3038 HOH HOH A . F 3 HOH 34 3039 3039 HOH HOH A . F 3 HOH 35 3040 3040 HOH HOH A . F 3 HOH 36 3041 3041 HOH HOH A . F 3 HOH 37 3042 3042 HOH HOH A . F 3 HOH 38 3043 3043 HOH HOH A . F 3 HOH 39 3045 3045 HOH HOH A . F 3 HOH 40 3047 3047 HOH HOH A . F 3 HOH 41 3048 3048 HOH HOH A . F 3 HOH 42 3051 3051 HOH HOH A . F 3 HOH 43 3052 3052 HOH HOH A . F 3 HOH 44 3053 3053 HOH HOH A . F 3 HOH 45 3054 3054 HOH HOH A . F 3 HOH 46 3055 3055 HOH HOH A . F 3 HOH 47 3057 3057 HOH HOH A . F 3 HOH 48 3058 3058 HOH HOH A . F 3 HOH 49 3059 3059 HOH HOH A . F 3 HOH 50 3060 3060 HOH HOH A . F 3 HOH 51 3063 3063 HOH HOH A . F 3 HOH 52 3066 3066 HOH HOH A . F 3 HOH 53 3068 3068 HOH HOH A . F 3 HOH 54 3069 3069 HOH HOH A . F 3 HOH 55 3071 3071 HOH HOH A . F 3 HOH 56 3072 3072 HOH HOH A . F 3 HOH 57 3073 3073 HOH HOH A . F 3 HOH 58 3074 3074 HOH HOH A . F 3 HOH 59 3075 3075 HOH HOH A . F 3 HOH 60 3076 3076 HOH HOH A . F 3 HOH 61 3079 3079 HOH HOH A . F 3 HOH 62 3081 3081 HOH HOH A . F 3 HOH 63 3082 3082 HOH HOH A . F 3 HOH 64 3083 3083 HOH HOH A . F 3 HOH 65 3084 3084 HOH HOH A . F 3 HOH 66 3085 3085 HOH HOH A . F 3 HOH 67 3086 3086 HOH HOH A . F 3 HOH 68 3087 3087 HOH HOH A . F 3 HOH 69 3088 3088 HOH HOH A . F 3 HOH 70 3090 3090 HOH HOH A . F 3 HOH 71 3091 3091 HOH HOH A . F 3 HOH 72 3092 3092 HOH HOH A . F 3 HOH 73 3093 3093 HOH HOH A . F 3 HOH 74 3094 3094 HOH HOH A . F 3 HOH 75 3095 3095 HOH HOH A . F 3 HOH 76 3096 3096 HOH HOH A . F 3 HOH 77 3098 3098 HOH HOH A . F 3 HOH 78 3099 3099 HOH HOH A . F 3 HOH 79 3101 3101 HOH HOH A . F 3 HOH 80 3102 3102 HOH HOH A . F 3 HOH 81 3103 3103 HOH HOH A . F 3 HOH 82 3106 3106 HOH HOH A . F 3 HOH 83 3107 3107 HOH HOH A . F 3 HOH 84 3108 3108 HOH HOH A . F 3 HOH 85 3109 3109 HOH HOH A . F 3 HOH 86 3110 3110 HOH HOH A . F 3 HOH 87 3111 3111 HOH HOH A . F 3 HOH 88 3112 3112 HOH HOH A . F 3 HOH 89 3113 3113 HOH HOH A . F 3 HOH 90 3114 3114 HOH HOH A . F 3 HOH 91 3115 3115 HOH HOH A . F 3 HOH 92 3116 3116 HOH HOH A . F 3 HOH 93 3117 3117 HOH HOH A . F 3 HOH 94 3118 3118 HOH HOH A . F 3 HOH 95 3119 3119 HOH HOH A . F 3 HOH 96 3120 3120 HOH HOH A . F 3 HOH 97 3121 3121 HOH HOH A . F 3 HOH 98 3123 3123 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-05-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2016-03-02 4 'Structure model' 1 3 2017-11-08 5 'Structure model' 1 4 2018-01-24 6 'Structure model' 1 5 2018-04-04 7 'Structure model' 1 6 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 6 'Structure model' 'Data collection' 6 7 'Structure model' 'Data collection' 7 7 'Structure model' 'Database references' 8 7 'Structure model' 'Derived calculations' 9 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' citation 3 6 'Structure model' diffrn_source 4 7 'Structure model' chem_comp_atom 5 7 'Structure model' chem_comp_bond 6 7 'Structure model' database_2 7 7 'Structure model' pdbx_initial_refinement_model 8 7 'Structure model' struct_ref_seq_dif 9 7 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_citation.pdbx_database_id_DOI' 3 5 'Structure model' '_citation.pdbx_database_id_PubMed' 4 6 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 5 6 'Structure model' '_diffrn_source.type' 6 7 'Structure model' '_database_2.pdbx_DOI' 7 7 'Structure model' '_database_2.pdbx_database_accession' 8 7 'Structure model' '_struct_ref_seq_dif.details' 9 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 10 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 11 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language MAR345 'data collection' . ? 1 ? ? ? ? MOPRO refinement . ? 2 ? ? ? ? DENZO 'data reduction' . ? 3 ? ? ? ? SCALEPACK 'data scaling' . ? 4 ? ? ? ? SCALA 'data scaling' . ? 5 ? ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HG1 A THR 30 ? ? H A CYS 32 ? ? 1.15 2 1 C A THR 28 ? ? H A TYR 29 ? B 1.18 3 1 HZ A PHE 13 ? B HG2 A GLU 23 ? ? 1.20 4 1 HH A TYR 29 ? C HA A THR 30 ? ? 1.31 5 1 H2 A THR 1 ? B H A ILE 35 ? ? 1.32 6 1 HB2 A CYS 16 ? ? HD2 A TYR 29 ? C 1.32 7 1 HG A SER 11 ? ? C2 A EOH 2002 ? A 1.40 8 1 H1 A THR 1 ? B O A HOH 3055 ? ? 1.43 9 1 HB2 A SER 11 ? ? C2 A EOH 2002 ? A 1.47 10 1 HG A SER 11 ? ? O A EOH 2002 ? A 1.60 11 1 O A HOH 3022 ? ? O A HOH 3114 ? ? 1.70 12 1 OG A SER 11 ? ? C2 A EOH 2002 ? A 1.74 13 1 O A HOH 3053 ? ? O A HOH 3117 ? ? 1.74 14 1 O A HOH 3031 ? ? O A HOH 3121 ? ? 1.80 15 1 CB A SER 11 ? ? C2 A EOH 2002 ? A 1.87 16 1 O A HOH 3101 ? ? O A HOH 3120 ? ? 1.91 17 1 O A HOH 3090 ? ? O A HOH 3121 ? ? 2.05 18 1 OG1 A THR 1 ? B O A HOH 3040 ? ? 2.11 19 1 O A HOH 3086 ? ? O A HOH 3119 ? ? 2.14 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 3101 ? ? 1_555 O A HOH 3118 ? ? 1_565 1.84 2 1 O A HOH 3057 ? ? 1_555 O A HOH 3098 ? ? 2_656 1.92 3 1 O A HOH 3028 ? ? 1_555 O A HOH 3123 ? ? 1_455 2.13 4 1 C1 A EOH 2004 ? ? 1_555 O A HOH 3085 ? ? 1_455 2.14 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 O A VAL 8 ? B C A VAL 8 ? B N A ALA 9 ? ? 112.53 122.70 -10.17 1.60 Y 2 1 CB A PHE 13 ? B CG A PHE 13 ? B CD2 A PHE 13 ? B 116.48 120.80 -4.32 0.70 N 3 1 CB A PHE 13 ? A CG A PHE 13 ? A CD1 A PHE 13 ? A 116.22 120.80 -4.58 0.70 N 4 1 CB A PHE 13 ? B CG A PHE 13 ? B CD1 A PHE 13 ? B 126.91 120.80 6.11 0.70 N 5 1 O A PHE 13 ? B C A PHE 13 ? B N A ASN 14 ? ? 111.62 122.70 -11.08 1.60 Y 6 1 CB A TYR 29 ? B CG A TYR 29 ? B CD2 A TYR 29 ? B 117.24 121.00 -3.76 0.60 N 7 1 CB A TYR 29 ? C CG A TYR 29 ? C CD2 A TYR 29 ? C 113.24 121.00 -7.76 0.60 N 8 1 CB A TYR 29 ? C CG A TYR 29 ? C CD1 A TYR 29 ? C 126.94 121.00 5.94 0.60 N 9 1 CG A TYR 29 ? B CD1 A TYR 29 ? B CE1 A TYR 29 ? B 116.30 121.30 -5.00 0.80 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EOH C1 C N N 88 EOH C2 C N N 89 EOH O O N N 90 EOH H11 H N N 91 EOH H12 H N N 92 EOH H21 H N N 93 EOH H22 H N N 94 EOH H23 H N N 95 EOH HO H N N 96 GLU N N N N 97 GLU CA C N S 98 GLU C C N N 99 GLU O O N N 100 GLU CB C N N 101 GLU CG C N N 102 GLU CD C N N 103 GLU OE1 O N N 104 GLU OE2 O N N 105 GLU OXT O N N 106 GLU H H N N 107 GLU H2 H N N 108 GLU HA H N N 109 GLU HB2 H N N 110 GLU HB3 H N N 111 GLU HG2 H N N 112 GLU HG3 H N N 113 GLU HE2 H N N 114 GLU HXT H N N 115 GLY N N N N 116 GLY CA C N N 117 GLY C C N N 118 GLY O O N N 119 GLY OXT O N N 120 GLY H H N N 121 GLY H2 H N N 122 GLY HA2 H N N 123 GLY HA3 H N N 124 GLY HXT H N N 125 HOH O O N N 126 HOH H1 H N N 127 HOH H2 H N N 128 ILE N N N N 129 ILE CA C N S 130 ILE C C N N 131 ILE O O N N 132 ILE CB C N S 133 ILE CG1 C N N 134 ILE CG2 C N N 135 ILE CD1 C N N 136 ILE OXT O N N 137 ILE H H N N 138 ILE H2 H N N 139 ILE HA H N N 140 ILE HB H N N 141 ILE HG12 H N N 142 ILE HG13 H N N 143 ILE HG21 H N N 144 ILE HG22 H N N 145 ILE HG23 H N N 146 ILE HD11 H N N 147 ILE HD12 H N N 148 ILE HD13 H N N 149 ILE HXT H N N 150 LEU N N N N 151 LEU CA C N S 152 LEU C C N N 153 LEU O O N N 154 LEU CB C N N 155 LEU CG C N N 156 LEU CD1 C N N 157 LEU CD2 C N N 158 LEU OXT O N N 159 LEU H H N N 160 LEU H2 H N N 161 LEU HA H N N 162 LEU HB2 H N N 163 LEU HB3 H N N 164 LEU HG H N N 165 LEU HD11 H N N 166 LEU HD12 H N N 167 LEU HD13 H N N 168 LEU HD21 H N N 169 LEU HD22 H N N 170 LEU HD23 H N N 171 LEU HXT H N N 172 PHE N N N N 173 PHE CA C N S 174 PHE C C N N 175 PHE O O N N 176 PHE CB C N N 177 PHE CG C Y N 178 PHE CD1 C Y N 179 PHE CD2 C Y N 180 PHE CE1 C Y N 181 PHE CE2 C Y N 182 PHE CZ C Y N 183 PHE OXT O N N 184 PHE H H N N 185 PHE H2 H N N 186 PHE HA H N N 187 PHE HB2 H N N 188 PHE HB3 H N N 189 PHE HD1 H N N 190 PHE HD2 H N N 191 PHE HE1 H N N 192 PHE HE2 H N N 193 PHE HZ H N N 194 PHE HXT H N N 195 PRO N N N N 196 PRO CA C N S 197 PRO C C N N 198 PRO O O N N 199 PRO CB C N N 200 PRO CG C N N 201 PRO CD C N N 202 PRO OXT O N N 203 PRO H H N N 204 PRO HA H N N 205 PRO HB2 H N N 206 PRO HB3 H N N 207 PRO HG2 H N N 208 PRO HG3 H N N 209 PRO HD2 H N N 210 PRO HD3 H N N 211 PRO HXT H N N 212 SER N N N N 213 SER CA C N S 214 SER C C N N 215 SER O O N N 216 SER CB C N N 217 SER OG O N N 218 SER OXT O N N 219 SER H H N N 220 SER H2 H N N 221 SER HA H N N 222 SER HB2 H N N 223 SER HB3 H N N 224 SER HG H N N 225 SER HXT H N N 226 THR N N N N 227 THR CA C N S 228 THR C C N N 229 THR O O N N 230 THR CB C N R 231 THR OG1 O N N 232 THR CG2 C N N 233 THR OXT O N N 234 THR H H N N 235 THR H2 H N N 236 THR HA H N N 237 THR HB H N N 238 THR HG1 H N N 239 THR HG21 H N N 240 THR HG22 H N N 241 THR HG23 H N N 242 THR HXT H N N 243 TYR N N N N 244 TYR CA C N S 245 TYR C C N N 246 TYR O O N N 247 TYR CB C N N 248 TYR CG C Y N 249 TYR CD1 C Y N 250 TYR CD2 C Y N 251 TYR CE1 C Y N 252 TYR CE2 C Y N 253 TYR CZ C Y N 254 TYR OH O N N 255 TYR OXT O N N 256 TYR H H N N 257 TYR H2 H N N 258 TYR HA H N N 259 TYR HB2 H N N 260 TYR HB3 H N N 261 TYR HD1 H N N 262 TYR HD2 H N N 263 TYR HE1 H N N 264 TYR HE2 H N N 265 TYR HH H N N 266 TYR HXT H N N 267 VAL N N N N 268 VAL CA C N S 269 VAL C C N N 270 VAL O O N N 271 VAL CB C N N 272 VAL CG1 C N N 273 VAL CG2 C N N 274 VAL OXT O N N 275 VAL H H N N 276 VAL H2 H N N 277 VAL HA H N N 278 VAL HB H N N 279 VAL HG11 H N N 280 VAL HG12 H N N 281 VAL HG13 H N N 282 VAL HG21 H N N 283 VAL HG22 H N N 284 VAL HG23 H N N 285 VAL HXT H N N 286 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EOH C1 C2 sing N N 83 EOH C1 O sing N N 84 EOH C1 H11 sing N N 85 EOH C1 H12 sing N N 86 EOH C2 H21 sing N N 87 EOH C2 H22 sing N N 88 EOH C2 H23 sing N N 89 EOH O HO sing N N 90 GLU N CA sing N N 91 GLU N H sing N N 92 GLU N H2 sing N N 93 GLU CA C sing N N 94 GLU CA CB sing N N 95 GLU CA HA sing N N 96 GLU C O doub N N 97 GLU C OXT sing N N 98 GLU CB CG sing N N 99 GLU CB HB2 sing N N 100 GLU CB HB3 sing N N 101 GLU CG CD sing N N 102 GLU CG HG2 sing N N 103 GLU CG HG3 sing N N 104 GLU CD OE1 doub N N 105 GLU CD OE2 sing N N 106 GLU OE2 HE2 sing N N 107 GLU OXT HXT sing N N 108 GLY N CA sing N N 109 GLY N H sing N N 110 GLY N H2 sing N N 111 GLY CA C sing N N 112 GLY CA HA2 sing N N 113 GLY CA HA3 sing N N 114 GLY C O doub N N 115 GLY C OXT sing N N 116 GLY OXT HXT sing N N 117 HOH O H1 sing N N 118 HOH O H2 sing N N 119 ILE N CA sing N N 120 ILE N H sing N N 121 ILE N H2 sing N N 122 ILE CA C sing N N 123 ILE CA CB sing N N 124 ILE CA HA sing N N 125 ILE C O doub N N 126 ILE C OXT sing N N 127 ILE CB CG1 sing N N 128 ILE CB CG2 sing N N 129 ILE CB HB sing N N 130 ILE CG1 CD1 sing N N 131 ILE CG1 HG12 sing N N 132 ILE CG1 HG13 sing N N 133 ILE CG2 HG21 sing N N 134 ILE CG2 HG22 sing N N 135 ILE CG2 HG23 sing N N 136 ILE CD1 HD11 sing N N 137 ILE CD1 HD12 sing N N 138 ILE CD1 HD13 sing N N 139 ILE OXT HXT sing N N 140 LEU N CA sing N N 141 LEU N H sing N N 142 LEU N H2 sing N N 143 LEU CA C sing N N 144 LEU CA CB sing N N 145 LEU CA HA sing N N 146 LEU C O doub N N 147 LEU C OXT sing N N 148 LEU CB CG sing N N 149 LEU CB HB2 sing N N 150 LEU CB HB3 sing N N 151 LEU CG CD1 sing N N 152 LEU CG CD2 sing N N 153 LEU CG HG sing N N 154 LEU CD1 HD11 sing N N 155 LEU CD1 HD12 sing N N 156 LEU CD1 HD13 sing N N 157 LEU CD2 HD21 sing N N 158 LEU CD2 HD22 sing N N 159 LEU CD2 HD23 sing N N 160 LEU OXT HXT sing N N 161 PHE N CA sing N N 162 PHE N H sing N N 163 PHE N H2 sing N N 164 PHE CA C sing N N 165 PHE CA CB sing N N 166 PHE CA HA sing N N 167 PHE C O doub N N 168 PHE C OXT sing N N 169 PHE CB CG sing N N 170 PHE CB HB2 sing N N 171 PHE CB HB3 sing N N 172 PHE CG CD1 doub Y N 173 PHE CG CD2 sing Y N 174 PHE CD1 CE1 sing Y N 175 PHE CD1 HD1 sing N N 176 PHE CD2 CE2 doub Y N 177 PHE CD2 HD2 sing N N 178 PHE CE1 CZ doub Y N 179 PHE CE1 HE1 sing N N 180 PHE CE2 CZ sing Y N 181 PHE CE2 HE2 sing N N 182 PHE CZ HZ sing N N 183 PHE OXT HXT sing N N 184 PRO N CA sing N N 185 PRO N CD sing N N 186 PRO N H sing N N 187 PRO CA C sing N N 188 PRO CA CB sing N N 189 PRO CA HA sing N N 190 PRO C O doub N N 191 PRO C OXT sing N N 192 PRO CB CG sing N N 193 PRO CB HB2 sing N N 194 PRO CB HB3 sing N N 195 PRO CG CD sing N N 196 PRO CG HG2 sing N N 197 PRO CG HG3 sing N N 198 PRO CD HD2 sing N N 199 PRO CD HD3 sing N N 200 PRO OXT HXT sing N N 201 SER N CA sing N N 202 SER N H sing N N 203 SER N H2 sing N N 204 SER CA C sing N N 205 SER CA CB sing N N 206 SER CA HA sing N N 207 SER C O doub N N 208 SER C OXT sing N N 209 SER CB OG sing N N 210 SER CB HB2 sing N N 211 SER CB HB3 sing N N 212 SER OG HG sing N N 213 SER OXT HXT sing N N 214 THR N CA sing N N 215 THR N H sing N N 216 THR N H2 sing N N 217 THR CA C sing N N 218 THR CA CB sing N N 219 THR CA HA sing N N 220 THR C O doub N N 221 THR C OXT sing N N 222 THR CB OG1 sing N N 223 THR CB CG2 sing N N 224 THR CB HB sing N N 225 THR OG1 HG1 sing N N 226 THR CG2 HG21 sing N N 227 THR CG2 HG22 sing N N 228 THR CG2 HG23 sing N N 229 THR OXT HXT sing N N 230 TYR N CA sing N N 231 TYR N H sing N N 232 TYR N H2 sing N N 233 TYR CA C sing N N 234 TYR CA CB sing N N 235 TYR CA HA sing N N 236 TYR C O doub N N 237 TYR C OXT sing N N 238 TYR CB CG sing N N 239 TYR CB HB2 sing N N 240 TYR CB HB3 sing N N 241 TYR CG CD1 doub Y N 242 TYR CG CD2 sing Y N 243 TYR CD1 CE1 sing Y N 244 TYR CD1 HD1 sing N N 245 TYR CD2 CE2 doub Y N 246 TYR CD2 HD2 sing N N 247 TYR CE1 CZ doub Y N 248 TYR CE1 HE1 sing N N 249 TYR CE2 CZ sing Y N 250 TYR CE2 HE2 sing N N 251 TYR CZ OH sing N N 252 TYR OH HH sing N N 253 TYR OXT HXT sing N N 254 VAL N CA sing N N 255 VAL N H sing N N 256 VAL N H2 sing N N 257 VAL CA C sing N N 258 VAL CA CB sing N N 259 VAL CA HA sing N N 260 VAL C O doub N N 261 VAL C OXT sing N N 262 VAL CB CG1 sing N N 263 VAL CB CG2 sing N N 264 VAL CB HB sing N N 265 VAL CG1 HG11 sing N N 266 VAL CG1 HG12 sing N N 267 VAL CG1 HG13 sing N N 268 VAL CG2 HG21 sing N N 269 VAL CG2 HG22 sing N N 270 VAL CG2 HG23 sing N N 271 VAL OXT HXT sing N N 272 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ETHANOL EOH 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1EJG _pdbx_initial_refinement_model.details 'PDB entry 1EJG' #