data_3NPP # _entry.id 3NPP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NPP pdb_00003npp 10.2210/pdb3npp/pdb RCSB RCSB060124 ? ? WWPDB D_1000060124 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 416515 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3NPP _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-06-28 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a Pfam DUF1093 family protein (BSU39620) from Bacillus subtilis at 2.15 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3NPP _cell.length_a 91.535 _cell.length_b 91.535 _cell.length_c 59.130 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NPP _symmetry.Int_Tables_number 150 _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Pfam DUF1093 family protein' 10109.176 2 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 7 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 9 ? ? ? ? 4 water nat water 18.015 117 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Uncharacterized protein yxeA' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GRFNPFIHQQDVYVQIDRDGRHLSPGGTEYTLDGYNASGKKEEVTFFAGKELRKNAYLKVKAKGKYVETWEEVKFED (MSE)PDSVQSKLK ; _entity_poly.pdbx_seq_one_letter_code_can ;GRFNPFIHQQDVYVQIDRDGRHLSPGGTEYTLDGYNASGKKEEVTFFAGKELRKNAYLKVKAKGKYVETWEEVKFEDMPD SVQSKLK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 416515 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ARG n 1 3 PHE n 1 4 ASN n 1 5 PRO n 1 6 PHE n 1 7 ILE n 1 8 HIS n 1 9 GLN n 1 10 GLN n 1 11 ASP n 1 12 VAL n 1 13 TYR n 1 14 VAL n 1 15 GLN n 1 16 ILE n 1 17 ASP n 1 18 ARG n 1 19 ASP n 1 20 GLY n 1 21 ARG n 1 22 HIS n 1 23 LEU n 1 24 SER n 1 25 PRO n 1 26 GLY n 1 27 GLY n 1 28 THR n 1 29 GLU n 1 30 TYR n 1 31 THR n 1 32 LEU n 1 33 ASP n 1 34 GLY n 1 35 TYR n 1 36 ASN n 1 37 ALA n 1 38 SER n 1 39 GLY n 1 40 LYS n 1 41 LYS n 1 42 GLU n 1 43 GLU n 1 44 VAL n 1 45 THR n 1 46 PHE n 1 47 PHE n 1 48 ALA n 1 49 GLY n 1 50 LYS n 1 51 GLU n 1 52 LEU n 1 53 ARG n 1 54 LYS n 1 55 ASN n 1 56 ALA n 1 57 TYR n 1 58 LEU n 1 59 LYS n 1 60 VAL n 1 61 LYS n 1 62 ALA n 1 63 LYS n 1 64 GLY n 1 65 LYS n 1 66 TYR n 1 67 VAL n 1 68 GLU n 1 69 THR n 1 70 TRP n 1 71 GLU n 1 72 GLU n 1 73 VAL n 1 74 LYS n 1 75 PHE n 1 76 GLU n 1 77 ASP n 1 78 MSE n 1 79 PRO n 1 80 ASP n 1 81 SER n 1 82 VAL n 1 83 GLN n 1 84 SER n 1 85 LYS n 1 86 LEU n 1 87 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'yxeA, BSU39620, HS74A' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YXEA_BACSU _struct_ref.pdbx_db_accession P54940 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RFNPFIHQQDVYVQIDRDGRHLSPGGTEYTLDGYNASGKKEEVTFFAGKELRKNAYLKVKAKGKYVETWEEVKFEDMPDS VQSKLK ; _struct_ref.pdbx_align_begin 30 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3NPP A 2 ? 87 ? P54940 30 ? 115 ? 30 115 2 1 3NPP B 2 ? 87 ? P54940 30 ? 115 ? 30 115 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3NPP GLY A 1 ? UNP P54940 ? ? 'expression tag' 0 1 2 3NPP GLY B 1 ? UNP P54940 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3NPP # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.54 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 65.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '3.200000000M (NH4)2SO4, 0.1M Bicine pH 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2010-04-08 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91837 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength 0.91837 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3NPP _reflns.d_resolution_high 2.15 _reflns.d_resolution_low 29.962 _reflns.number_all ? _reflns.number_obs 15880 _reflns.pdbx_Rsym_value 0.112 _reflns.pdbx_redundancy 6.100 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 33.756 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 3NPP _refine.ls_d_res_high 2.150 _refine.ls_d_res_low 29.962 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.990 _refine.ls_number_reflns_obs 15878 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORDS CONTAIN SUM OF TLS AND RESIDUAL U FACTORS. 3. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 4. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 5. GLYCEROL (GOL) AND SULFATE (SO4) FROM THE CRYSTALLIZATION/CRYOPROTECTANT SOLUTIONS HAVE BEEN MODELED INTO THE SOLVENT STRUCTURE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.181 _refine.ls_R_factor_R_work 0.179 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.217 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 791 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 38.842 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.440 _refine.aniso_B[2][2] -0.440 _refine.aniso_B[3][3] 0.660 _refine.aniso_B[1][2] -0.220 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.944 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.155 _refine.overall_SU_ML 0.106 _refine.overall_SU_B 7.613 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 87.92 _refine.B_iso_min 18.80 _refine.occupancy_max 1.00 _refine.occupancy_min 0.33 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.169 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1392 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 87 _refine_hist.number_atoms_solvent 117 _refine_hist.number_atoms_total 1596 _refine_hist.d_res_high 2.150 _refine_hist.d_res_low 29.962 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1515 0.017 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1041 0.005 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 2037 1.537 1.996 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2535 1.172 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 178 6.990 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 74 37.313 25.135 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 254 13.633 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 6 22.024 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 198 0.095 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1630 0.007 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 297 0.002 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 869 0.701 1.500 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 359 0.201 1.500 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1396 1.310 2.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 646 2.284 3.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 638 3.539 4.500 ? ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 'X-RAY DIFFRACTION' 1 1 'TIGHT POSITIONAL' A 166 0.290 0.050 1 ? ? ? 'X-RAY DIFFRACTION' 1 1 'MEDIUM POSITIONAL' A 964 0.770 0.500 2 ? ? ? 'X-RAY DIFFRACTION' 1 1 'TIGHT THERMAL' A 166 0.800 0.500 3 ? ? ? 'X-RAY DIFFRACTION' 1 1 'MEDIUM THERMAL' A 964 1.300 2.000 4 ? ? ? # _refine_ls_shell.d_res_high 2.150 _refine_ls_shell.d_res_low 2.206 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 1096 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.228 _refine_ls_shell.R_factor_R_free 0.281 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1154 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id 1 1 1 2 A 0 A 0 ? . . . . . . . . 1 2 1 2 B 0 B 0 ? . . . . . . . . 1 1 2 4 A 30 A 39 ? . . . . . . . . 1 2 2 4 B 30 B 39 ? . . . . . . . . 1 1 3 2 A 40 A 50 ? . . . . . . . . 1 2 3 2 B 40 B 50 ? . . . . . . . . 1 1 4 4 A 51 A 98 ? . . . . . . . . 1 2 4 4 B 51 B 98 ? . . . . . . . . 1 1 5 2 A 99 A 115 ? . . . . . . . . 1 2 5 2 B 99 B 115 ? . . . . . . . . # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3NPP _struct.title 'Crystal structure of a Pfam DUF1093 family protein (BSU39620) from Bacillus subtilis at 2.15 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, UNKNOWN FUNCTION' _struct_keywords.pdbx_keywords 'Structural Genomics, Unknown function' _struct_keywords.entry_id 3NPP # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 2 ? N N N 2 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 4 ? T N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 74 ? MSE A 78 ? LYS A 102 MSE A 106 5 ? 5 HELX_P HELX_P2 2 PRO A 79 ? LYS A 87 ? PRO A 107 LYS A 115 1 ? 9 HELX_P HELX_P3 3 LYS B 74 ? MSE B 78 ? LYS B 102 MSE B 106 5 ? 5 HELX_P HELX_P4 4 PRO B 79 ? LYS B 87 ? PRO B 107 LYS B 115 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 77 C ? ? ? 1_555 A MSE 78 N ? ? A ASP 105 A MSE 106 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale2 covale both ? A MSE 78 C ? ? ? 1_555 A PRO 79 N ? ? A MSE 106 A PRO 107 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale3 covale both ? B ASP 77 C ? ? ? 1_555 B MSE 78 N ? ? B ASP 105 B MSE 106 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale4 covale both ? B MSE 78 C ? ? ? 1_555 B PRO 79 N ? ? B MSE 106 B PRO 107 1_555 ? ? ? ? ? ? ? 1.360 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 24 A . ? SER 52 A PRO 25 A ? PRO 53 A 1 -2.95 2 SER 24 B . ? SER 52 B PRO 25 B ? PRO 53 B 1 1.31 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 3 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 2 ? PHE A 3 ? ARG A 30 PHE A 31 A 2 LYS B 41 ? ALA B 48 ? LYS B 69 ALA B 76 A 3 GLY B 27 ? ASN B 36 ? GLY B 55 ASN B 64 A 4 ARG B 21 ? LEU B 23 ? ARG B 49 LEU B 51 B 1 ARG A 2 ? PHE A 3 ? ARG A 30 PHE A 31 B 2 LYS B 41 ? ALA B 48 ? LYS B 69 ALA B 76 B 3 GLY B 27 ? ASN B 36 ? GLY B 55 ASN B 64 B 4 GLN B 9 ? GLN B 15 ? GLN B 37 GLN B 43 B 5 TYR B 57 ? LYS B 63 ? TYR B 85 LYS B 91 B 6 TYR B 66 ? VAL B 73 ? TYR B 94 VAL B 101 C 1 GLN A 9 ? GLN A 15 ? GLN A 37 GLN A 43 C 2 TYR A 57 ? LYS A 63 ? TYR A 85 LYS A 91 C 3 TYR A 66 ? VAL A 73 ? TYR A 94 VAL A 101 D 1 ARG A 21 ? LEU A 23 ? ARG A 49 LEU A 51 D 2 GLY A 27 ? TYR A 35 ? GLY A 55 TYR A 63 D 3 LYS A 41 ? ALA A 48 ? LYS A 69 ALA A 76 D 4 ARG B 2 ? PHE B 3 ? ARG B 30 PHE B 31 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 3 ? N PHE A 31 O GLU B 43 ? O GLU B 71 A 2 3 O PHE B 46 ? O PHE B 74 N TYR B 30 ? N TYR B 58 A 3 4 O GLU B 29 ? O GLU B 57 N ARG B 21 ? N ARG B 49 B 1 2 N PHE A 3 ? N PHE A 31 O GLU B 43 ? O GLU B 71 B 2 3 O PHE B 46 ? O PHE B 74 N TYR B 30 ? N TYR B 58 B 3 4 O TYR B 35 ? O TYR B 63 N TYR B 13 ? N TYR B 41 B 4 5 N VAL B 12 ? N VAL B 40 O VAL B 60 ? O VAL B 88 B 5 6 N LYS B 61 ? N LYS B 89 O THR B 69 ? O THR B 97 C 1 2 N GLN A 10 ? N GLN A 38 O ALA A 62 ? O ALA A 90 C 2 3 N LYS A 61 ? N LYS A 89 O GLU A 68 ? O GLU A 96 D 1 2 N ARG A 21 ? N ARG A 49 O GLU A 29 ? O GLU A 57 D 2 3 N GLY A 34 ? N GLY A 62 O GLU A 42 ? O GLU A 70 D 3 4 N GLU A 43 ? N GLU A 71 O PHE B 3 ? O PHE B 31 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 203 ? 10 'BINDING SITE FOR RESIDUE GOL A 203' AC2 Software A GOL 204 ? 4 'BINDING SITE FOR RESIDUE GOL A 204' AC3 Software A GOL 205 ? 6 'BINDING SITE FOR RESIDUE GOL A 205' AC4 Software A GOL 206 ? 3 'BINDING SITE FOR RESIDUE GOL A 206' AC5 Software A GOL 207 ? 4 'BINDING SITE FOR RESIDUE GOL A 207' AC6 Software A SO4 208 ? 3 'BINDING SITE FOR RESIDUE SO4 A 208' AC7 Software A SO4 209 ? 5 'BINDING SITE FOR RESIDUE SO4 A 209' AC8 Software A SO4 210 ? 12 'BINDING SITE FOR RESIDUE SO4 A 210' AC9 Software A SO4 211 ? 10 'BINDING SITE FOR RESIDUE SO4 A 211' BC1 Software A SO4 213 ? 7 'BINDING SITE FOR RESIDUE SO4 A 213' BC2 Software B GOL 201 ? 7 'BINDING SITE FOR RESIDUE GOL B 201' BC3 Software B GOL 202 ? 3 'BINDING SITE FOR RESIDUE GOL B 202' BC4 Software B SO4 212 ? 8 'BINDING SITE FOR RESIDUE SO4 B 212' BC5 Software B SO4 214 ? 7 'BINDING SITE FOR RESIDUE SO4 B 214' BC6 Software B SO4 215 ? 2 'BINDING SITE FOR RESIDUE SO4 B 215' BC7 Software B SO4 216 ? 7 'BINDING SITE FOR RESIDUE SO4 B 216' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 PRO A 5 ? PRO A 33 . ? 3_665 ? 2 AC1 10 ILE A 7 ? ILE A 35 . ? 3_665 ? 3 AC1 10 PHE A 46 ? PHE A 74 . ? 1_555 ? 4 AC1 10 PHE A 47 ? PHE A 75 . ? 1_555 ? 5 AC1 10 VAL A 67 ? VAL A 95 . ? 1_555 ? 6 AC1 10 GLU A 68 ? GLU A 96 . ? 1_555 ? 7 AC1 10 THR A 69 ? THR A 97 . ? 1_555 ? 8 AC1 10 TRP A 70 ? TRP A 98 . ? 1_555 ? 9 AC1 10 HOH S . ? HOH A 264 . ? 3_665 ? 10 AC1 10 PRO B 5 ? PRO B 33 . ? 1_555 ? 11 AC2 4 LYS A 40 ? LYS A 68 . ? 1_555 ? 12 AC2 4 HOH S . ? HOH A 236 . ? 1_555 ? 13 AC2 4 HOH S . ? HOH A 265 . ? 1_555 ? 14 AC2 4 GLY B 1 ? GLY B 0 . ? 1_555 ? 15 AC3 6 LYS A 74 ? LYS A 102 . ? 1_555 ? 16 AC3 6 GLU A 76 ? GLU A 104 . ? 1_555 ? 17 AC3 6 SER A 81 ? SER A 109 . ? 3_665 ? 18 AC3 6 HOH S . ? HOH A 223 . ? 1_555 ? 19 AC3 6 ASP B 80 ? ASP B 108 . ? 3_664 ? 20 AC3 6 LYS B 87 ? LYS B 115 . ? 3_664 ? 21 AC4 3 LYS A 50 ? LYS A 78 . ? 1_555 ? 22 AC4 3 ARG A 53 ? ARG A 81 . ? 1_555 ? 23 AC4 3 HOH S . ? HOH A 237 . ? 1_555 ? 24 AC5 4 GLN A 15 ? GLN A 43 . ? 1_555 ? 25 AC5 4 TYR A 57 ? TYR A 85 . ? 1_555 ? 26 AC5 4 HOH S . ? HOH A 262 . ? 1_555 ? 27 AC5 4 GOL N . ? GOL B 202 . ? 3_664 ? 28 AC6 3 GLY A 1 ? GLY A 0 . ? 1_555 ? 29 AC6 3 HOH S . ? HOH A 315 . ? 1_555 ? 30 AC6 3 HOH T . ? HOH B 308 . ? 1_555 ? 31 AC7 5 HIS A 22 ? HIS A 50 . ? 1_555 ? 32 AC7 5 SER A 24 ? SER A 52 . ? 1_555 ? 33 AC7 5 PRO A 25 ? PRO A 53 . ? 1_555 ? 34 AC7 5 GLY A 26 ? GLY A 54 . ? 1_555 ? 35 AC7 5 HOH S . ? HOH A 322 . ? 1_555 ? 36 AC8 12 GLN A 9 ? GLN A 37 . ? 2_655 ? 37 AC8 12 GLN A 9 ? GLN A 37 . ? 3_665 ? 38 AC8 12 GLN A 9 ? GLN A 37 . ? 1_555 ? 39 AC8 12 LYS A 61 ? LYS A 89 . ? 1_555 ? 40 AC8 12 LYS A 61 ? LYS A 89 . ? 2_655 ? 41 AC8 12 LYS A 61 ? LYS A 89 . ? 3_665 ? 42 AC8 12 SO4 K . ? SO4 A 211 . ? 3_665 ? 43 AC8 12 SO4 K . ? SO4 A 211 . ? 1_555 ? 44 AC8 12 SO4 K . ? SO4 A 211 . ? 2_655 ? 45 AC8 12 HOH S . ? HOH A 235 . ? 2_655 ? 46 AC8 12 HOH S . ? HOH A 235 . ? 1_555 ? 47 AC8 12 HOH S . ? HOH A 235 . ? 3_665 ? 48 AC9 10 LYS A 61 ? LYS A 89 . ? 3_665 ? 49 AC9 10 LYS A 61 ? LYS A 89 . ? 1_555 ? 50 AC9 10 LYS A 61 ? LYS A 89 . ? 2_655 ? 51 AC9 10 LYS A 63 ? LYS A 91 . ? 1_555 ? 52 AC9 10 LYS A 63 ? LYS A 91 . ? 2_655 ? 53 AC9 10 LYS A 63 ? LYS A 91 . ? 3_665 ? 54 AC9 10 SO4 J . ? SO4 A 210 . ? 1_555 ? 55 AC9 10 SO4 J . ? SO4 A 210 . ? 3_665 ? 56 AC9 10 SO4 J . ? SO4 A 210 . ? 2_655 ? 57 AC9 10 HOH S . ? HOH A 231 . ? 3_665 ? 58 BC1 7 ARG A 21 ? ARG A 49 . ? 1_555 ? 59 BC1 7 ARG A 21 ? ARG A 49 . ? 5_555 ? 60 BC1 7 GLU A 29 ? GLU A 57 . ? 1_555 ? 61 BC1 7 HOH S . ? HOH A 257 . ? 1_555 ? 62 BC1 7 HOH S . ? HOH A 257 . ? 5_555 ? 63 BC1 7 LEU B 23 ? LEU B 51 . ? 4_545 ? 64 BC1 7 SER B 24 ? SER B 52 . ? 4_545 ? 65 BC2 7 PRO A 5 ? PRO A 33 . ? 1_555 ? 66 BC2 7 GLN B 9 ? GLN B 37 . ? 2_655 ? 67 BC2 7 PHE B 47 ? PHE B 75 . ? 1_555 ? 68 BC2 7 LYS B 63 ? LYS B 91 . ? 2_655 ? 69 BC2 7 GLU B 68 ? GLU B 96 . ? 1_555 ? 70 BC2 7 TRP B 70 ? TRP B 98 . ? 1_555 ? 71 BC2 7 HOH T . ? HOH B 324 . ? 2_655 ? 72 BC3 3 TYR A 57 ? TYR A 85 . ? 2_656 ? 73 BC3 3 GOL G . ? GOL A 207 . ? 2_656 ? 74 BC3 3 TYR B 57 ? TYR B 85 . ? 1_555 ? 75 BC4 8 PHE A 6 ? PHE A 34 . ? 1_555 ? 76 BC4 8 HIS A 8 ? HIS A 36 . ? 1_555 ? 77 BC4 8 HOH S . ? HOH A 219 . ? 2_655 ? 78 BC4 8 HOH S . ? HOH A 232 . ? 1_555 ? 79 BC4 8 LYS B 65 ? LYS B 93 . ? 1_555 ? 80 BC4 8 TYR B 66 ? TYR B 94 . ? 1_555 ? 81 BC4 8 HOH T . ? HOH B 238 . ? 1_555 ? 82 BC4 8 HOH T . ? HOH B 254 . ? 1_555 ? 83 BC5 7 GLU A 43 ? GLU A 71 . ? 4_655 ? 84 BC5 7 HOH S . ? HOH A 301 . ? 4_655 ? 85 BC5 7 ARG B 2 ? ARG B 30 . ? 4_655 ? 86 BC5 7 HIS B 22 ? HIS B 50 . ? 1_555 ? 87 BC5 7 SER B 24 ? SER B 52 . ? 1_555 ? 88 BC5 7 PRO B 25 ? PRO B 53 . ? 1_555 ? 89 BC5 7 GLY B 26 ? GLY B 54 . ? 1_555 ? 90 BC6 2 GLY B 1 ? GLY B 0 . ? 1_555 ? 91 BC6 2 ARG B 2 ? ARG B 30 . ? 1_555 ? 92 BC7 7 ARG A 21 ? ARG A 49 . ? 4_655 ? 93 BC7 7 HIS A 22 ? HIS A 50 . ? 2_655 ? 94 BC7 7 HIS A 22 ? HIS A 50 . ? 4_655 ? 95 BC7 7 SER A 24 ? SER A 52 . ? 2_655 ? 96 BC7 7 HOH S . ? HOH A 299 . ? 4_655 ? 97 BC7 7 HOH S . ? HOH A 299 . ? 2_655 ? 98 BC7 7 ARG B 21 ? ARG B 49 . ? 1_555 ? # _atom_sites.entry_id 3NPP _atom_sites.fract_transf_matrix[1][1] 0.010925 _atom_sites.fract_transf_matrix[1][2] 0.006307 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012615 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016912 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 ARG 2 30 30 ARG ARG A . n A 1 3 PHE 3 31 31 PHE PHE A . n A 1 4 ASN 4 32 32 ASN ASN A . n A 1 5 PRO 5 33 33 PRO PRO A . n A 1 6 PHE 6 34 34 PHE PHE A . n A 1 7 ILE 7 35 35 ILE ILE A . n A 1 8 HIS 8 36 36 HIS HIS A . n A 1 9 GLN 9 37 37 GLN GLN A . n A 1 10 GLN 10 38 38 GLN GLN A . n A 1 11 ASP 11 39 39 ASP ASP A . n A 1 12 VAL 12 40 40 VAL VAL A . n A 1 13 TYR 13 41 41 TYR TYR A . n A 1 14 VAL 14 42 42 VAL VAL A . n A 1 15 GLN 15 43 43 GLN GLN A . n A 1 16 ILE 16 44 44 ILE ILE A . n A 1 17 ASP 17 45 45 ASP ASP A . n A 1 18 ARG 18 46 46 ARG ARG A . n A 1 19 ASP 19 47 47 ASP ASP A . n A 1 20 GLY 20 48 48 GLY GLY A . n A 1 21 ARG 21 49 49 ARG ARG A . n A 1 22 HIS 22 50 50 HIS HIS A . n A 1 23 LEU 23 51 51 LEU LEU A . n A 1 24 SER 24 52 52 SER SER A . n A 1 25 PRO 25 53 53 PRO PRO A . n A 1 26 GLY 26 54 54 GLY GLY A . n A 1 27 GLY 27 55 55 GLY GLY A . n A 1 28 THR 28 56 56 THR THR A . n A 1 29 GLU 29 57 57 GLU GLU A . n A 1 30 TYR 30 58 58 TYR TYR A . n A 1 31 THR 31 59 59 THR THR A . n A 1 32 LEU 32 60 60 LEU LEU A . n A 1 33 ASP 33 61 61 ASP ASP A . n A 1 34 GLY 34 62 62 GLY GLY A . n A 1 35 TYR 35 63 63 TYR TYR A . n A 1 36 ASN 36 64 64 ASN ASN A . n A 1 37 ALA 37 65 65 ALA ALA A . n A 1 38 SER 38 66 66 SER SER A . n A 1 39 GLY 39 67 67 GLY GLY A . n A 1 40 LYS 40 68 68 LYS LYS A . n A 1 41 LYS 41 69 69 LYS LYS A . n A 1 42 GLU 42 70 70 GLU GLU A . n A 1 43 GLU 43 71 71 GLU GLU A . n A 1 44 VAL 44 72 72 VAL VAL A . n A 1 45 THR 45 73 73 THR THR A . n A 1 46 PHE 46 74 74 PHE PHE A . n A 1 47 PHE 47 75 75 PHE PHE A . n A 1 48 ALA 48 76 76 ALA ALA A . n A 1 49 GLY 49 77 77 GLY GLY A . n A 1 50 LYS 50 78 78 LYS LYS A . n A 1 51 GLU 51 79 79 GLU GLU A . n A 1 52 LEU 52 80 80 LEU LEU A . n A 1 53 ARG 53 81 81 ARG ARG A . n A 1 54 LYS 54 82 82 LYS LYS A . n A 1 55 ASN 55 83 83 ASN ASN A . n A 1 56 ALA 56 84 84 ALA ALA A . n A 1 57 TYR 57 85 85 TYR TYR A . n A 1 58 LEU 58 86 86 LEU LEU A . n A 1 59 LYS 59 87 87 LYS LYS A . n A 1 60 VAL 60 88 88 VAL VAL A . n A 1 61 LYS 61 89 89 LYS LYS A . n A 1 62 ALA 62 90 90 ALA ALA A . n A 1 63 LYS 63 91 91 LYS LYS A . n A 1 64 GLY 64 92 92 GLY GLY A . n A 1 65 LYS 65 93 93 LYS LYS A . n A 1 66 TYR 66 94 94 TYR TYR A . n A 1 67 VAL 67 95 95 VAL VAL A . n A 1 68 GLU 68 96 96 GLU GLU A . n A 1 69 THR 69 97 97 THR THR A . n A 1 70 TRP 70 98 98 TRP TRP A . n A 1 71 GLU 71 99 99 GLU GLU A . n A 1 72 GLU 72 100 100 GLU GLU A . n A 1 73 VAL 73 101 101 VAL VAL A . n A 1 74 LYS 74 102 102 LYS LYS A . n A 1 75 PHE 75 103 103 PHE PHE A . n A 1 76 GLU 76 104 104 GLU GLU A . n A 1 77 ASP 77 105 105 ASP ASP A . n A 1 78 MSE 78 106 106 MSE MSE A . n A 1 79 PRO 79 107 107 PRO PRO A . n A 1 80 ASP 80 108 108 ASP ASP A . n A 1 81 SER 81 109 109 SER SER A . n A 1 82 VAL 82 110 110 VAL VAL A . n A 1 83 GLN 83 111 111 GLN GLN A . n A 1 84 SER 84 112 112 SER SER A . n A 1 85 LYS 85 113 113 LYS LYS A . n A 1 86 LEU 86 114 114 LEU LEU A . n A 1 87 LYS 87 115 115 LYS LYS A . n B 1 1 GLY 1 0 0 GLY GLY B . n B 1 2 ARG 2 30 30 ARG ARG B . n B 1 3 PHE 3 31 31 PHE PHE B . n B 1 4 ASN 4 32 32 ASN ASN B . n B 1 5 PRO 5 33 33 PRO PRO B . n B 1 6 PHE 6 34 34 PHE PHE B . n B 1 7 ILE 7 35 35 ILE ILE B . n B 1 8 HIS 8 36 36 HIS HIS B . n B 1 9 GLN 9 37 37 GLN GLN B . n B 1 10 GLN 10 38 38 GLN GLN B . n B 1 11 ASP 11 39 39 ASP ASP B . n B 1 12 VAL 12 40 40 VAL VAL B . n B 1 13 TYR 13 41 41 TYR TYR B . n B 1 14 VAL 14 42 42 VAL VAL B . n B 1 15 GLN 15 43 43 GLN GLN B . n B 1 16 ILE 16 44 44 ILE ILE B . n B 1 17 ASP 17 45 45 ASP ASP B . n B 1 18 ARG 18 46 46 ARG ARG B . n B 1 19 ASP 19 47 47 ASP ASP B . n B 1 20 GLY 20 48 48 GLY GLY B . n B 1 21 ARG 21 49 49 ARG ARG B . n B 1 22 HIS 22 50 50 HIS HIS B . n B 1 23 LEU 23 51 51 LEU LEU B . n B 1 24 SER 24 52 52 SER SER B . n B 1 25 PRO 25 53 53 PRO PRO B . n B 1 26 GLY 26 54 54 GLY GLY B . n B 1 27 GLY 27 55 55 GLY GLY B . n B 1 28 THR 28 56 56 THR THR B . n B 1 29 GLU 29 57 57 GLU GLU B . n B 1 30 TYR 30 58 58 TYR TYR B . n B 1 31 THR 31 59 59 THR THR B . n B 1 32 LEU 32 60 60 LEU LEU B . n B 1 33 ASP 33 61 61 ASP ASP B . n B 1 34 GLY 34 62 62 GLY GLY B . n B 1 35 TYR 35 63 63 TYR TYR B . n B 1 36 ASN 36 64 64 ASN ASN B . n B 1 37 ALA 37 65 65 ALA ALA B . n B 1 38 SER 38 66 66 SER SER B . n B 1 39 GLY 39 67 67 GLY GLY B . n B 1 40 LYS 40 68 68 LYS LYS B . n B 1 41 LYS 41 69 69 LYS LYS B . n B 1 42 GLU 42 70 70 GLU GLU B . n B 1 43 GLU 43 71 71 GLU GLU B . n B 1 44 VAL 44 72 72 VAL VAL B . n B 1 45 THR 45 73 73 THR THR B . n B 1 46 PHE 46 74 74 PHE PHE B . n B 1 47 PHE 47 75 75 PHE PHE B . n B 1 48 ALA 48 76 76 ALA ALA B . n B 1 49 GLY 49 77 77 GLY GLY B . n B 1 50 LYS 50 78 78 LYS LYS B . n B 1 51 GLU 51 79 79 GLU GLU B . n B 1 52 LEU 52 80 80 LEU LEU B . n B 1 53 ARG 53 81 81 ARG ARG B . n B 1 54 LYS 54 82 82 LYS LYS B . n B 1 55 ASN 55 83 83 ASN ASN B . n B 1 56 ALA 56 84 84 ALA ALA B . n B 1 57 TYR 57 85 85 TYR TYR B . n B 1 58 LEU 58 86 86 LEU LEU B . n B 1 59 LYS 59 87 87 LYS LYS B . n B 1 60 VAL 60 88 88 VAL VAL B . n B 1 61 LYS 61 89 89 LYS LYS B . n B 1 62 ALA 62 90 90 ALA ALA B . n B 1 63 LYS 63 91 91 LYS LYS B . n B 1 64 GLY 64 92 92 GLY GLY B . n B 1 65 LYS 65 93 93 LYS LYS B . n B 1 66 TYR 66 94 94 TYR TYR B . n B 1 67 VAL 67 95 95 VAL VAL B . n B 1 68 GLU 68 96 96 GLU GLU B . n B 1 69 THR 69 97 97 THR THR B . n B 1 70 TRP 70 98 98 TRP TRP B . n B 1 71 GLU 71 99 99 GLU GLU B . n B 1 72 GLU 72 100 100 GLU GLU B . n B 1 73 VAL 73 101 101 VAL VAL B . n B 1 74 LYS 74 102 102 LYS LYS B . n B 1 75 PHE 75 103 103 PHE PHE B . n B 1 76 GLU 76 104 104 GLU GLU B . n B 1 77 ASP 77 105 105 ASP ASP B . n B 1 78 MSE 78 106 106 MSE MSE B . n B 1 79 PRO 79 107 107 PRO PRO B . n B 1 80 ASP 80 108 108 ASP ASP B . n B 1 81 SER 81 109 109 SER SER B . n B 1 82 VAL 82 110 110 VAL VAL B . n B 1 83 GLN 83 111 111 GLN GLN B . n B 1 84 SER 84 112 112 SER SER B . n B 1 85 LYS 85 113 113 LYS LYS B . n B 1 86 LEU 86 114 114 LEU LEU B . n B 1 87 LYS 87 115 115 LYS LYS B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL 1 203 203 GOL GOL A . D 2 GOL 1 204 204 GOL GOL A . E 2 GOL 1 205 205 GOL GOL A . F 2 GOL 1 206 206 GOL GOL A . G 2 GOL 1 207 207 GOL GOL A . H 3 SO4 1 208 208 SO4 SO4 A . I 3 SO4 1 209 209 SO4 SO4 A . J 3 SO4 1 210 210 SO4 SO4 A . K 3 SO4 1 211 211 SO4 SO4 A . L 3 SO4 1 213 213 SO4 SO4 A . M 2 GOL 1 201 201 GOL GOL B . N 2 GOL 1 202 202 GOL GOL B . O 3 SO4 1 212 212 SO4 SO4 B . P 3 SO4 1 214 214 SO4 SO4 B . Q 3 SO4 1 215 215 SO4 SO4 B . R 3 SO4 1 216 216 SO4 SO4 B . S 4 HOH 1 217 217 HOH HOH A . S 4 HOH 2 218 218 HOH HOH A . S 4 HOH 3 219 219 HOH HOH A . S 4 HOH 4 220 220 HOH HOH A . S 4 HOH 5 221 221 HOH HOH A . S 4 HOH 6 222 222 HOH HOH A . S 4 HOH 7 223 223 HOH HOH A . S 4 HOH 8 224 224 HOH HOH A . S 4 HOH 9 225 225 HOH HOH A . S 4 HOH 10 226 226 HOH HOH A . S 4 HOH 11 227 227 HOH HOH A . S 4 HOH 12 228 228 HOH HOH A . S 4 HOH 13 229 229 HOH HOH A . S 4 HOH 14 230 230 HOH HOH A . S 4 HOH 15 231 231 HOH HOH A . S 4 HOH 16 232 232 HOH HOH A . S 4 HOH 17 233 233 HOH HOH A . S 4 HOH 18 234 234 HOH HOH A . S 4 HOH 19 235 235 HOH HOH A . S 4 HOH 20 236 236 HOH HOH A . S 4 HOH 21 237 237 HOH HOH A . S 4 HOH 22 239 239 HOH HOH A . S 4 HOH 23 240 240 HOH HOH A . S 4 HOH 24 241 241 HOH HOH A . S 4 HOH 25 242 242 HOH HOH A . S 4 HOH 26 243 243 HOH HOH A . S 4 HOH 27 244 244 HOH HOH A . S 4 HOH 28 245 245 HOH HOH A . S 4 HOH 29 246 246 HOH HOH A . S 4 HOH 30 247 247 HOH HOH A . S 4 HOH 31 248 248 HOH HOH A . S 4 HOH 32 249 249 HOH HOH A . S 4 HOH 33 250 250 HOH HOH A . S 4 HOH 34 251 251 HOH HOH A . S 4 HOH 35 253 253 HOH HOH A . S 4 HOH 36 255 255 HOH HOH A . S 4 HOH 37 256 256 HOH HOH A . S 4 HOH 38 257 257 HOH HOH A . S 4 HOH 39 258 258 HOH HOH A . S 4 HOH 40 259 259 HOH HOH A . S 4 HOH 41 261 261 HOH HOH A . S 4 HOH 42 262 262 HOH HOH A . S 4 HOH 43 263 263 HOH HOH A . S 4 HOH 44 264 264 HOH HOH A . S 4 HOH 45 265 265 HOH HOH A . S 4 HOH 46 266 266 HOH HOH A . S 4 HOH 47 267 267 HOH HOH A . S 4 HOH 48 297 297 HOH HOH A . S 4 HOH 49 299 299 HOH HOH A . S 4 HOH 50 301 301 HOH HOH A . S 4 HOH 51 302 302 HOH HOH A . S 4 HOH 52 304 304 HOH HOH A . S 4 HOH 53 305 305 HOH HOH A . S 4 HOH 54 307 307 HOH HOH A . S 4 HOH 55 310 310 HOH HOH A . S 4 HOH 56 311 311 HOH HOH A . S 4 HOH 57 313 313 HOH HOH A . S 4 HOH 58 314 314 HOH HOH A . S 4 HOH 59 315 315 HOH HOH A . S 4 HOH 60 316 316 HOH HOH A . S 4 HOH 61 317 317 HOH HOH A . S 4 HOH 62 318 318 HOH HOH A . S 4 HOH 63 319 319 HOH HOH A . S 4 HOH 64 320 320 HOH HOH A . S 4 HOH 65 321 321 HOH HOH A . S 4 HOH 66 322 322 HOH HOH A . S 4 HOH 67 325 325 HOH HOH A . S 4 HOH 68 326 326 HOH HOH A . S 4 HOH 69 327 327 HOH HOH A . S 4 HOH 70 330 330 HOH HOH A . S 4 HOH 71 331 331 HOH HOH A . S 4 HOH 72 333 333 HOH HOH A . T 4 HOH 1 238 238 HOH HOH B . T 4 HOH 2 252 252 HOH HOH B . T 4 HOH 3 254 254 HOH HOH B . T 4 HOH 4 260 260 HOH HOH B . T 4 HOH 5 268 268 HOH HOH B . T 4 HOH 6 269 269 HOH HOH B . T 4 HOH 7 270 270 HOH HOH B . T 4 HOH 8 271 271 HOH HOH B . T 4 HOH 9 272 272 HOH HOH B . T 4 HOH 10 273 273 HOH HOH B . T 4 HOH 11 274 274 HOH HOH B . T 4 HOH 12 275 275 HOH HOH B . T 4 HOH 13 276 276 HOH HOH B . T 4 HOH 14 277 277 HOH HOH B . T 4 HOH 15 278 278 HOH HOH B . T 4 HOH 16 279 279 HOH HOH B . T 4 HOH 17 280 280 HOH HOH B . T 4 HOH 18 281 281 HOH HOH B . T 4 HOH 19 282 282 HOH HOH B . T 4 HOH 20 283 283 HOH HOH B . T 4 HOH 21 284 284 HOH HOH B . T 4 HOH 22 285 285 HOH HOH B . T 4 HOH 23 286 286 HOH HOH B . T 4 HOH 24 287 287 HOH HOH B . T 4 HOH 25 288 288 HOH HOH B . T 4 HOH 26 289 289 HOH HOH B . T 4 HOH 27 290 290 HOH HOH B . T 4 HOH 28 291 291 HOH HOH B . T 4 HOH 29 292 292 HOH HOH B . T 4 HOH 30 293 293 HOH HOH B . T 4 HOH 31 294 294 HOH HOH B . T 4 HOH 32 295 295 HOH HOH B . T 4 HOH 33 296 296 HOH HOH B . T 4 HOH 34 298 298 HOH HOH B . T 4 HOH 35 300 300 HOH HOH B . T 4 HOH 36 303 303 HOH HOH B . T 4 HOH 37 306 306 HOH HOH B . T 4 HOH 38 308 308 HOH HOH B . T 4 HOH 39 309 309 HOH HOH B . T 4 HOH 40 312 312 HOH HOH B . T 4 HOH 41 323 323 HOH HOH B . T 4 HOH 42 324 324 HOH HOH B . T 4 HOH 43 328 328 HOH HOH B . T 4 HOH 44 329 329 HOH HOH B . T 4 HOH 45 332 332 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 78 A MSE 106 ? MET SELENOMETHIONINE 2 B MSE 78 B MSE 106 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 2 1,2,3 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4270 ? 1 MORE -76 ? 1 'SSA (A^2)' 10690 ? 2 'ABSA (A^2)' 23500 ? 2 MORE -406 ? 2 'SSA (A^2)' 22480 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 91.5350000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 45.7675000000 -0.8660254038 -0.5000000000 0.0000000000 79.2716353354 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A SO4 210 ? J SO4 . 2 1 A SO4 210 ? J SO4 . 3 1 A HOH 299 ? S HOH . 4 1 B HOH 288 ? T HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-07-28 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2019-07-17 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 51.4880 16.0140 -5.4500 0.2789 0.2164 0.0781 0.0314 0.0136 -0.0175 3.6823 2.5537 3.3943 2.4023 2.4661 1.5187 0.1425 -0.0389 -0.1036 0.1531 -0.2410 -0.2189 0.1659 0.3371 0.2714 'X-RAY DIFFRACTION' 2 ? refined 41.7660 12.4880 -10.9540 0.2727 0.2066 0.0753 -0.0015 -0.0133 -0.0459 1.5923 1.9464 1.5142 0.4584 -0.5083 -0.9521 -0.0283 0.0269 0.0014 0.1013 -0.2385 0.0492 -0.2438 0.2120 -0.0195 'X-RAY DIFFRACTION' 3 ? refined 49.4100 10.5170 1.7730 0.4092 0.3459 0.2675 -0.0511 -0.0589 0.0605 3.8790 4.5249 24.9731 4.7260 3.6746 -0.1553 0.6522 -0.5855 -0.0667 -0.4826 -0.1943 -0.3106 0.7080 -0.0690 0.5298 'X-RAY DIFFRACTION' 4 ? refined 59.5640 25.2980 16.9220 0.4586 0.3878 0.0780 -0.0826 -0.0373 -0.0054 1.5270 1.5487 9.3168 -0.5020 -1.3336 -0.2078 0.1776 -0.0649 -0.1126 -0.3128 0.0492 -0.1261 0.6006 0.3470 0.0079 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 46 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 47 A 115 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 B 0 B 37 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 B 38 B 115 ? . . . . ? # _phasing.method SAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0110 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA 3.3.15 2009/03/31 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 # _pdbx_entry_details.entry_id 3NPP _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT (30-115) WAS EXPRESSED WITH THE PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CE _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 LYS _pdbx_validate_rmsd_bond.auth_seq_id_1 87 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 NZ _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 LYS _pdbx_validate_rmsd_bond.auth_seq_id_2 87 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.654 _pdbx_validate_rmsd_bond.bond_target_value 1.486 _pdbx_validate_rmsd_bond.bond_deviation 0.168 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.025 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CD _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LYS _pdbx_validate_rmsd_angle.auth_seq_id_1 87 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CE _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LYS _pdbx_validate_rmsd_angle.auth_seq_id_2 87 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NZ _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LYS _pdbx_validate_rmsd_angle.auth_seq_id_3 87 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 126.11 _pdbx_validate_rmsd_angle.angle_target_value 111.70 _pdbx_validate_rmsd_angle.angle_deviation 14.41 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PHE _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 34 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -106.65 _pdbx_validate_torsion.psi 60.78 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 30 ? CZ ? A ARG 2 CZ 2 1 Y 1 A ARG 30 ? NH1 ? A ARG 2 NH1 3 1 Y 1 A ARG 30 ? NH2 ? A ARG 2 NH2 4 1 Y 1 A ARG 81 ? NE ? A ARG 53 NE 5 1 Y 1 A ARG 81 ? CZ ? A ARG 53 CZ 6 1 Y 1 A ARG 81 ? NH1 ? A ARG 53 NH1 7 1 Y 1 A ARG 81 ? NH2 ? A ARG 53 NH2 8 1 Y 1 A LYS 82 ? CD ? A LYS 54 CD 9 1 Y 1 A LYS 82 ? CE ? A LYS 54 CE 10 1 Y 1 A LYS 82 ? NZ ? A LYS 54 NZ 11 1 Y 1 A LYS 93 ? CD ? A LYS 65 CD 12 1 Y 1 A LYS 93 ? CE ? A LYS 65 CE 13 1 Y 1 A LYS 93 ? NZ ? A LYS 65 NZ 14 1 Y 1 B ARG 46 ? NH1 ? B ARG 18 NH1 15 1 Y 1 B ARG 46 ? NH2 ? B ARG 18 NH2 16 1 Y 1 B LYS 68 ? CD ? B LYS 40 CD 17 1 Y 1 B LYS 68 ? CE ? B LYS 40 CE 18 1 Y 1 B LYS 68 ? NZ ? B LYS 40 NZ 19 1 Y 1 B LYS 69 ? CE ? B LYS 41 CE 20 1 Y 1 B LYS 69 ? NZ ? B LYS 41 NZ 21 1 Y 1 B LYS 78 ? CE ? B LYS 50 CE 22 1 Y 1 B LYS 78 ? NZ ? B LYS 50 NZ 23 1 Y 1 B ARG 81 ? CG ? B ARG 53 CG 24 1 Y 1 B ARG 81 ? CD ? B ARG 53 CD 25 1 Y 1 B ARG 81 ? NE ? B ARG 53 NE 26 1 Y 1 B ARG 81 ? CZ ? B ARG 53 CZ 27 1 Y 1 B ARG 81 ? NH1 ? B ARG 53 NH1 28 1 Y 1 B ARG 81 ? NH2 ? B ARG 53 NH2 29 1 Y 1 B LYS 82 ? NZ ? B LYS 54 NZ 30 1 Y 1 B LYS 113 ? NZ ? B LYS 85 NZ # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'SULFATE ION' SO4 4 water HOH #