HEADER HYDROLASE 30-JUN-10 3NR2 TITLE CRYSTAL STRUCTURE OF CASPASE-6 ZYMOGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE-6; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CASP-6, APOPTOTIC PROTEASE MCH-2, CASPASE-6 SUBUNIT P18, COMPND 5 CASPASE-6 SUBUNIT P11; COMPND 6 EC: 3.4.22.59; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: DELTA-PRODOMAIN; CASPASE-6 SUBUNIT P18/CASPASE-6 COMPND 10 SUBUNIT P11 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS CASPASE DOMAIN, CYSTEINE PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.-D.SU,X.-J.WANG,X.LIU,W.MI,K.-T.WANG REVDAT 3 01-NOV-23 3NR2 1 SEQADV REVDAT 2 10-NOV-10 3NR2 1 JRNL REVDAT 1 27-OCT-10 3NR2 0 JRNL AUTH X.-J.WANG,Q.CAO,X.LIU,K.-T.WANG,W.MI,Y.ZHANG,L.-F.LI, JRNL AUTH 2 A.C.LEBLANC,X.-D.SU JRNL TITL CRYSTAL STRUCTURES OF HUMAN CASPASE 6 REVEAL A NEW MECHANISM JRNL TITL 2 FOR INTRAMOLECULAR CLEAVAGE SELF-ACTIVATION JRNL REF EMBO REP. V. 11 841 2010 JRNL REFN ISSN 1469-221X JRNL PMID 20890311 JRNL DOI 10.1038/EMBOR.2010.141 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 81.8 REMARK 3 NUMBER OF REFLECTIONS : 15216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8997 - 6.4310 0.79 1314 147 0.1844 0.2060 REMARK 3 2 6.4310 - 5.1128 0.84 1310 140 0.1738 0.2146 REMARK 3 3 5.1128 - 4.4689 0.85 1307 145 0.1408 0.1944 REMARK 3 4 4.4689 - 4.0614 0.83 1262 141 0.1473 0.2158 REMARK 3 5 4.0614 - 3.7709 0.84 1259 141 0.1545 0.1924 REMARK 3 6 3.7709 - 3.5489 0.83 1261 135 0.1660 0.2246 REMARK 3 7 3.5489 - 3.3715 0.82 1226 135 0.1853 0.2595 REMARK 3 8 3.3715 - 3.2249 0.82 1217 135 0.2027 0.2869 REMARK 3 9 3.2249 - 3.1009 0.81 1201 141 0.2282 0.2713 REMARK 3 10 3.1009 - 2.9940 0.79 1168 132 0.2203 0.3539 REMARK 3 11 2.9940 - 2.9004 0.78 1168 131 0.2090 0.2900 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.28 REMARK 3 B_SOL : 9.04 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.91320 REMARK 3 B22 (A**2) : 4.91320 REMARK 3 B33 (A**2) : -9.82640 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3733 REMARK 3 ANGLE : 1.218 5033 REMARK 3 CHIRALITY : 0.086 554 REMARK 3 PLANARITY : 0.004 641 REMARK 3 DIHEDRAL : 18.975 1315 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NR2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060173. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 291 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR-H REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 6000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS PLUS REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16873 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1CP3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM SODIUM CACODYLATE PH 6.0, 7.5% REMARK 280 W/V PEG 4000, 1% W/V BETA-D-GLUCOPYRANOSIDE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.94133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.97067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.95600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.98533 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 139.92667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 111.94133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 55.97067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 27.98533 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 83.95600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 139.92667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 8 REMARK 465 ALA A 9 REMARK 465 SER A 10 REMARK 465 MET A 11 REMARK 465 THR A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 GLN A 15 REMARK 465 GLN A 16 REMARK 465 MET A 17 REMARK 465 GLY A 18 REMARK 465 ARG A 19 REMARK 465 ASP A 20 REMARK 465 PRO A 21 REMARK 465 ASN A 22 REMARK 465 SER A 23 REMARK 465 ALA A 24 REMARK 465 PHE A 25 REMARK 465 TYR A 26 REMARK 465 LYS A 27 REMARK 465 ARG A 28 REMARK 465 GLU A 29 REMARK 465 MET A 30 REMARK 465 GLN A 167 REMARK 465 HIS A 168 REMARK 465 ASP A 169 REMARK 465 VAL A 170 REMARK 465 PRO A 171 REMARK 465 VAL A 172 REMARK 465 ILE A 173 REMARK 465 PRO A 174 REMARK 465 LEU A 175 REMARK 465 ASP A 176 REMARK 465 VAL A 177 REMARK 465 VAL A 178 REMARK 465 ASP A 179 REMARK 465 ASN A 180 REMARK 465 GLN A 181 REMARK 465 THR A 182 REMARK 465 GLU A 183 REMARK 465 LYS A 184 REMARK 465 LEU A 185 REMARK 465 ASP A 186 REMARK 465 ASP A 262 REMARK 465 PHE A 263 REMARK 465 CYS A 264 REMARK 465 LYS A 265 REMARK 465 ASP A 266 REMARK 465 PRO A 267 REMARK 465 SER A 268 REMARK 465 ALA A 269 REMARK 465 ILE A 270 REMARK 465 ASN A 293 REMARK 465 LEU A 294 REMARK 465 GLU A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 MET B 8 REMARK 465 ALA B 9 REMARK 465 SER B 10 REMARK 465 MET B 11 REMARK 465 THR B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 GLN B 15 REMARK 465 GLN B 16 REMARK 465 MET B 17 REMARK 465 GLY B 18 REMARK 465 ARG B 19 REMARK 465 ASP B 20 REMARK 465 PRO B 21 REMARK 465 ASN B 22 REMARK 465 SER B 23 REMARK 465 ALA B 24 REMARK 465 PHE B 25 REMARK 465 TYR B 26 REMARK 465 LYS B 27 REMARK 465 ARG B 28 REMARK 465 GLU B 29 REMARK 465 MET B 30 REMARK 465 GLN B 167 REMARK 465 HIS B 168 REMARK 465 ASP B 169 REMARK 465 VAL B 170 REMARK 465 PRO B 171 REMARK 465 VAL B 172 REMARK 465 ILE B 173 REMARK 465 PRO B 174 REMARK 465 LEU B 175 REMARK 465 ASP B 176 REMARK 465 VAL B 177 REMARK 465 VAL B 178 REMARK 465 ASP B 179 REMARK 465 ASN B 180 REMARK 465 GLN B 181 REMARK 465 THR B 182 REMARK 465 GLU B 183 REMARK 465 LYS B 184 REMARK 465 LEU B 185 REMARK 465 ASP B 186 REMARK 465 VAL B 261 REMARK 465 ASP B 262 REMARK 465 PHE B 263 REMARK 465 CYS B 264 REMARK 465 LYS B 265 REMARK 465 ASP B 266 REMARK 465 PRO B 267 REMARK 465 SER B 268 REMARK 465 ALA B 269 REMARK 465 ILE B 270 REMARK 465 GLY B 271 REMARK 465 SER B 292 REMARK 465 ASN B 293 REMARK 465 LEU B 294 REMARK 465 GLU B 295 REMARK 465 HIS B 296 REMARK 465 HIS B 297 REMARK 465 HIS B 298 REMARK 465 HIS B 299 REMARK 465 HIS B 300 REMARK 465 HIS B 301 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 ARG A 42 CD NE CZ NH1 NH2 REMARK 470 ARG A 76 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 ARG A 164 NE CZ NH1 NH2 REMARK 470 ASN A 166 CG OD1 ND2 REMARK 470 THR A 187 OG1 CG2 REMARK 470 ILE A 189 CG1 CG2 CD1 REMARK 470 ARG A 260 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 261 CG1 CG2 REMARK 470 LYS A 273 CD CE NZ REMARK 470 TRP B 57 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 57 CZ3 CH2 REMARK 470 ARG B 65 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 76 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 123 CD OE1 OE2 REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 ARG B 260 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 273 CD CE NZ REMARK 470 LYS B 291 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 116 CB CYS A 116 SG -0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 64 57.28 -110.77 REMARK 500 SER A 120 -166.89 -173.65 REMARK 500 ALA A 129 -159.92 -82.69 REMARK 500 CYS A 148 71.71 -165.01 REMARK 500 ASN A 188 78.41 -106.95 REMARK 500 SER A 196 -21.27 -144.06 REMARK 500 ALA A 202 -91.14 -123.54 REMARK 500 SER A 242 -73.08 -106.25 REMARK 500 SER A 257 4.09 -63.53 REMARK 500 PHE A 288 56.75 -119.58 REMARK 500 LYS B 38 109.75 -57.00 REMARK 500 PHE B 56 151.30 -44.90 REMARK 500 ASP B 110 40.34 -103.32 REMARK 500 CYS B 148 83.64 -160.91 REMARK 500 ALA B 163 -158.98 -121.46 REMARK 500 SER B 196 -31.70 -153.06 REMARK 500 PRO B 201 -146.49 -83.90 REMARK 500 ALA B 202 -27.43 -173.58 REMARK 500 VAL B 212 136.94 -170.26 REMARK 500 TYR B 216 -169.49 -120.36 REMARK 500 PHE B 288 71.64 -111.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OD5 RELATED DB: PDB REMARK 900 ACTIVE CASPASE-6 BOUND WITH AC-VEID-CHO DBREF 3NR2 A 24 293 UNP P55212 CASP6_HUMAN 24 293 DBREF 3NR2 B 24 293 UNP P55212 CASP6_HUMAN 24 293 SEQADV 3NR2 MET A 8 UNP P55212 EXPRESSION TAG SEQADV 3NR2 ALA A 9 UNP P55212 EXPRESSION TAG SEQADV 3NR2 SER A 10 UNP P55212 EXPRESSION TAG SEQADV 3NR2 MET A 11 UNP P55212 EXPRESSION TAG SEQADV 3NR2 THR A 12 UNP P55212 EXPRESSION TAG SEQADV 3NR2 GLY A 13 UNP P55212 EXPRESSION TAG SEQADV 3NR2 GLY A 14 UNP P55212 EXPRESSION TAG SEQADV 3NR2 GLN A 15 UNP P55212 EXPRESSION TAG SEQADV 3NR2 GLN A 16 UNP P55212 EXPRESSION TAG SEQADV 3NR2 MET A 17 UNP P55212 EXPRESSION TAG SEQADV 3NR2 GLY A 18 UNP P55212 EXPRESSION TAG SEQADV 3NR2 ARG A 19 UNP P55212 EXPRESSION TAG SEQADV 3NR2 ASP A 20 UNP P55212 EXPRESSION TAG SEQADV 3NR2 PRO A 21 UNP P55212 EXPRESSION TAG SEQADV 3NR2 ASN A 22 UNP P55212 EXPRESSION TAG SEQADV 3NR2 SER A 23 UNP P55212 EXPRESSION TAG SEQADV 3NR2 VAL A 93 UNP P55212 ALA 93 ENGINEERED MUTATION SEQADV 3NR2 ALA A 163 UNP P55212 CYS 163 ENGINEERED MUTATION SEQADV 3NR2 LEU A 294 UNP P55212 EXPRESSION TAG SEQADV 3NR2 GLU A 295 UNP P55212 EXPRESSION TAG SEQADV 3NR2 HIS A 296 UNP P55212 EXPRESSION TAG SEQADV 3NR2 HIS A 297 UNP P55212 EXPRESSION TAG SEQADV 3NR2 HIS A 298 UNP P55212 EXPRESSION TAG SEQADV 3NR2 HIS A 299 UNP P55212 EXPRESSION TAG SEQADV 3NR2 HIS A 300 UNP P55212 EXPRESSION TAG SEQADV 3NR2 HIS A 301 UNP P55212 EXPRESSION TAG SEQADV 3NR2 MET B 8 UNP P55212 EXPRESSION TAG SEQADV 3NR2 ALA B 9 UNP P55212 EXPRESSION TAG SEQADV 3NR2 SER B 10 UNP P55212 EXPRESSION TAG SEQADV 3NR2 MET B 11 UNP P55212 EXPRESSION TAG SEQADV 3NR2 THR B 12 UNP P55212 EXPRESSION TAG SEQADV 3NR2 GLY B 13 UNP P55212 EXPRESSION TAG SEQADV 3NR2 GLY B 14 UNP P55212 EXPRESSION TAG SEQADV 3NR2 GLN B 15 UNP P55212 EXPRESSION TAG SEQADV 3NR2 GLN B 16 UNP P55212 EXPRESSION TAG SEQADV 3NR2 MET B 17 UNP P55212 EXPRESSION TAG SEQADV 3NR2 GLY B 18 UNP P55212 EXPRESSION TAG SEQADV 3NR2 ARG B 19 UNP P55212 EXPRESSION TAG SEQADV 3NR2 ASP B 20 UNP P55212 EXPRESSION TAG SEQADV 3NR2 PRO B 21 UNP P55212 EXPRESSION TAG SEQADV 3NR2 ASN B 22 UNP P55212 EXPRESSION TAG SEQADV 3NR2 SER B 23 UNP P55212 EXPRESSION TAG SEQADV 3NR2 VAL B 93 UNP P55212 ALA 93 ENGINEERED MUTATION SEQADV 3NR2 ALA B 163 UNP P55212 CYS 163 ENGINEERED MUTATION SEQADV 3NR2 LEU B 294 UNP P55212 EXPRESSION TAG SEQADV 3NR2 GLU B 295 UNP P55212 EXPRESSION TAG SEQADV 3NR2 HIS B 296 UNP P55212 EXPRESSION TAG SEQADV 3NR2 HIS B 297 UNP P55212 EXPRESSION TAG SEQADV 3NR2 HIS B 298 UNP P55212 EXPRESSION TAG SEQADV 3NR2 HIS B 299 UNP P55212 EXPRESSION TAG SEQADV 3NR2 HIS B 300 UNP P55212 EXPRESSION TAG SEQADV 3NR2 HIS B 301 UNP P55212 EXPRESSION TAG SEQRES 1 A 294 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG ASP SEQRES 2 A 294 PRO ASN SER ALA PHE TYR LYS ARG GLU MET PHE ASP PRO SEQRES 3 A 294 ALA GLU LYS TYR LYS MET ASP HIS ARG ARG ARG GLY ILE SEQRES 4 A 294 ALA LEU ILE PHE ASN HIS GLU ARG PHE PHE TRP HIS LEU SEQRES 5 A 294 THR LEU PRO GLU ARG ARG GLY THR CYS ALA ASP ARG ASP SEQRES 6 A 294 ASN LEU THR ARG ARG PHE SER ASP LEU GLY PHE GLU VAL SEQRES 7 A 294 LYS CYS PHE ASN ASP LEU LYS VAL GLU GLU LEU LEU LEU SEQRES 8 A 294 LYS ILE HIS GLU VAL SER THR VAL SER HIS ALA ASP ALA SEQRES 9 A 294 ASP CYS PHE VAL CYS VAL PHE LEU SER HIS GLY GLU GLY SEQRES 10 A 294 ASN HIS ILE TYR ALA TYR ASP ALA LYS ILE GLU ILE GLN SEQRES 11 A 294 THR LEU THR GLY LEU PHE LYS GLY ASP LYS CYS HIS SER SEQRES 12 A 294 LEU VAL GLY LYS PRO LYS ILE PHE ILE ILE GLN ALA ALA SEQRES 13 A 294 ARG GLY ASN GLN HIS ASP VAL PRO VAL ILE PRO LEU ASP SEQRES 14 A 294 VAL VAL ASP ASN GLN THR GLU LYS LEU ASP THR ASN ILE SEQRES 15 A 294 THR GLU VAL ASP ALA ALA SER VAL TYR THR LEU PRO ALA SEQRES 16 A 294 GLY ALA ASP PHE LEU MET CYS TYR SER VAL ALA GLU GLY SEQRES 17 A 294 TYR TYR SER HIS ARG GLU THR VAL ASN GLY SER TRP TYR SEQRES 18 A 294 ILE GLN ASP LEU CYS GLU MET LEU GLY LYS TYR GLY SER SEQRES 19 A 294 SER LEU GLU PHE THR GLU LEU LEU THR LEU VAL ASN ARG SEQRES 20 A 294 LYS VAL SER GLN ARG ARG VAL ASP PHE CYS LYS ASP PRO SEQRES 21 A 294 SER ALA ILE GLY LYS LYS GLN VAL PRO CYS PHE ALA SER SEQRES 22 A 294 MET LEU THR LYS LYS LEU HIS PHE PHE PRO LYS SER ASN SEQRES 23 A 294 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 294 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG ASP SEQRES 2 B 294 PRO ASN SER ALA PHE TYR LYS ARG GLU MET PHE ASP PRO SEQRES 3 B 294 ALA GLU LYS TYR LYS MET ASP HIS ARG ARG ARG GLY ILE SEQRES 4 B 294 ALA LEU ILE PHE ASN HIS GLU ARG PHE PHE TRP HIS LEU SEQRES 5 B 294 THR LEU PRO GLU ARG ARG GLY THR CYS ALA ASP ARG ASP SEQRES 6 B 294 ASN LEU THR ARG ARG PHE SER ASP LEU GLY PHE GLU VAL SEQRES 7 B 294 LYS CYS PHE ASN ASP LEU LYS VAL GLU GLU LEU LEU LEU SEQRES 8 B 294 LYS ILE HIS GLU VAL SER THR VAL SER HIS ALA ASP ALA SEQRES 9 B 294 ASP CYS PHE VAL CYS VAL PHE LEU SER HIS GLY GLU GLY SEQRES 10 B 294 ASN HIS ILE TYR ALA TYR ASP ALA LYS ILE GLU ILE GLN SEQRES 11 B 294 THR LEU THR GLY LEU PHE LYS GLY ASP LYS CYS HIS SER SEQRES 12 B 294 LEU VAL GLY LYS PRO LYS ILE PHE ILE ILE GLN ALA ALA SEQRES 13 B 294 ARG GLY ASN GLN HIS ASP VAL PRO VAL ILE PRO LEU ASP SEQRES 14 B 294 VAL VAL ASP ASN GLN THR GLU LYS LEU ASP THR ASN ILE SEQRES 15 B 294 THR GLU VAL ASP ALA ALA SER VAL TYR THR LEU PRO ALA SEQRES 16 B 294 GLY ALA ASP PHE LEU MET CYS TYR SER VAL ALA GLU GLY SEQRES 17 B 294 TYR TYR SER HIS ARG GLU THR VAL ASN GLY SER TRP TYR SEQRES 18 B 294 ILE GLN ASP LEU CYS GLU MET LEU GLY LYS TYR GLY SER SEQRES 19 B 294 SER LEU GLU PHE THR GLU LEU LEU THR LEU VAL ASN ARG SEQRES 20 B 294 LYS VAL SER GLN ARG ARG VAL ASP PHE CYS LYS ASP PRO SEQRES 21 B 294 SER ALA ILE GLY LYS LYS GLN VAL PRO CYS PHE ALA SER SEQRES 22 B 294 MET LEU THR LYS LYS LEU HIS PHE PHE PRO LYS SER ASN SEQRES 23 B 294 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 PHE A 56 THR A 60 5 5 HELIX 2 2 GLY A 66 LEU A 81 1 16 HELIX 3 3 LYS A 92 VAL A 106 1 15 HELIX 4 4 ILE A 136 GLY A 141 1 6 HELIX 5 5 LEU A 142 CYS A 148 5 7 HELIX 6 6 TRP A 227 GLY A 240 1 14 HELIX 7 7 GLU A 244 SER A 257 1 14 HELIX 8 8 GLY B 66 LEU B 81 1 16 HELIX 9 9 LYS B 92 VAL B 106 1 15 HELIX 10 10 ILE B 136 LEU B 142 1 7 HELIX 11 11 CYS B 148 VAL B 152 5 5 HELIX 12 12 TRP B 227 GLY B 240 1 14 HELIX 13 13 GLU B 244 GLN B 258 1 15 SHEET 1 A12 GLU A 84 ASN A 89 0 SHEET 2 A12 ILE A 46 ASN A 51 1 N ASN A 51 O PHE A 88 SHEET 3 A12 PHE A 114 GLU A 123 1 O LEU A 119 N PHE A 50 SHEET 4 A12 LYS A 156 ALA A 163 1 O ILE A 157 N CYS A 116 SHEET 5 A12 PHE A 206 TYR A 210 1 O CYS A 209 N ILE A 160 SHEET 6 A12 CYS A 277 SER A 280 -1 O CYS A 277 N TYR A 210 SHEET 7 A12 CYS B 277 SER B 280 -1 O SER B 280 N PHE A 278 SHEET 8 A12 PHE B 206 TYR B 210 -1 N MET B 208 O ALA B 279 SHEET 9 A12 LYS B 156 ALA B 163 1 N ILE B 160 O CYS B 209 SHEET 10 A12 PHE B 114 GLU B 123 1 N PHE B 114 O ILE B 157 SHEET 11 A12 ILE B 46 ASN B 51 1 N PHE B 50 O VAL B 117 SHEET 12 A12 GLU B 84 ASN B 89 1 O LYS B 86 N ALA B 47 SHEET 1 B12 LYS A 133 GLU A 135 0 SHEET 2 B12 HIS A 126 TYR A 128 -1 N ILE A 127 O ILE A 134 SHEET 3 B12 PHE A 114 GLU A 123 -1 N HIS A 121 O TYR A 128 SHEET 4 B12 LYS A 156 ALA A 163 1 O ILE A 157 N CYS A 116 SHEET 5 B12 PHE A 206 TYR A 210 1 O CYS A 209 N ILE A 160 SHEET 6 B12 CYS A 277 SER A 280 -1 O CYS A 277 N TYR A 210 SHEET 7 B12 CYS B 277 SER B 280 -1 O SER B 280 N PHE A 278 SHEET 8 B12 PHE B 206 TYR B 210 -1 N MET B 208 O ALA B 279 SHEET 9 B12 LYS B 156 ALA B 163 1 N ILE B 160 O CYS B 209 SHEET 10 B12 PHE B 114 GLU B 123 1 N PHE B 114 O ILE B 157 SHEET 11 B12 HIS B 126 TYR B 128 -1 O HIS B 126 N GLU B 123 SHEET 12 B12 LYS B 133 GLU B 135 -1 O ILE B 134 N ILE B 127 SHEET 1 C 3 THR A 190 ALA A 194 0 SHEET 2 C 3 TYR A 217 GLU A 221 -1 O SER A 218 N ASP A 193 SHEET 3 C 3 GLY A 225 SER A 226 -1 O GLY A 225 N GLU A 221 SHEET 1 D 3 THR B 190 ALA B 194 0 SHEET 2 D 3 TYR B 217 GLU B 221 -1 O ARG B 220 N GLU B 191 SHEET 3 D 3 GLY B 225 SER B 226 -1 O GLY B 225 N GLU B 221 CISPEP 1 GLY B 165 ASN B 166 0 -8.47 CRYST1 127.983 127.983 167.912 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007814 0.004511 0.000000 0.00000 SCALE2 0.000000 0.009022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005956 0.00000