data_3NRF # _entry.id 3NRF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NRF pdb_00003nrf 10.2210/pdb3nrf/pdb RCSB RCSB060186 ? ? WWPDB D_1000060186 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 416839 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3NRF _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-06-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of an ApaG protein (PA1934) from PSEUDOMONAS AERUGINOSA at 1.50 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3NRF _cell.length_a 69.343 _cell.length_b 96.491 _cell.length_c 61.788 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NRF _symmetry.Int_Tables_number 20 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ApaG protein' 11196.344 2 ? ? ? ? 2 non-polymer syn '(4R)-2-METHYLPENTANE-2,4-DIOL' 118.174 3 ? ? ? ? 3 non-polymer syn 'CACODYLATE ION' 136.989 1 ? ? ? ? 4 water nat water 18.015 212 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GAAPDAV(MSE)VFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKP GASVEGDAIFASEDDAVYGASLVRLSDRCK ; _entity_poly.pdbx_seq_one_letter_code_can ;GAAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKPGASV EGDAIFASEDDAVYGASLVRLSDRCK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 416839 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 ALA n 1 4 PRO n 1 5 ASP n 1 6 ALA n 1 7 VAL n 1 8 MSE n 1 9 VAL n 1 10 PHE n 1 11 ALA n 1 12 ARG n 1 13 GLN n 1 14 GLY n 1 15 ASP n 1 16 LYS n 1 17 GLY n 1 18 SER n 1 19 VAL n 1 20 SER n 1 21 VAL n 1 22 GLY n 1 23 ASP n 1 24 LYS n 1 25 HIS n 1 26 PHE n 1 27 ARG n 1 28 THR n 1 29 GLN n 1 30 ALA n 1 31 PHE n 1 32 LYS n 1 33 VAL n 1 34 ARG n 1 35 LEU n 1 36 VAL n 1 37 ASN n 1 38 ALA n 1 39 ALA n 1 40 LYS n 1 41 SER n 1 42 GLU n 1 43 ILE n 1 44 SER n 1 45 LEU n 1 46 LYS n 1 47 ASN n 1 48 SER n 1 49 CYS n 1 50 LEU n 1 51 VAL n 1 52 ALA n 1 53 GLN n 1 54 SER n 1 55 ALA n 1 56 ALA n 1 57 GLY n 1 58 GLN n 1 59 SER n 1 60 PHE n 1 61 ARG n 1 62 LEU n 1 63 ASP n 1 64 THR n 1 65 VAL n 1 66 ASP n 1 67 GLU n 1 68 GLU n 1 69 LEU n 1 70 THR n 1 71 ALA n 1 72 ASP n 1 73 THR n 1 74 LEU n 1 75 LYS n 1 76 PRO n 1 77 GLY n 1 78 ALA n 1 79 SER n 1 80 VAL n 1 81 GLU n 1 82 GLY n 1 83 ASP n 1 84 ALA n 1 85 ILE n 1 86 PHE n 1 87 ALA n 1 88 SER n 1 89 GLU n 1 90 ASP n 1 91 ASP n 1 92 ALA n 1 93 VAL n 1 94 TYR n 1 95 GLY n 1 96 ALA n 1 97 SER n 1 98 LEU n 1 99 VAL n 1 100 ARG n 1 101 LEU n 1 102 SER n 1 103 ASP n 1 104 ARG n 1 105 CYS n 1 106 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PA1934 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas aeruginosa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9I2H0_PSEAE _struct_ref.pdbx_db_accession Q9I2H0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKPGASVE GDAIFASEDDAVYGASLVRLSDRCK ; _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3NRF A 2 ? 106 ? Q9I2H0 22 ? 126 ? 22 126 2 1 3NRF B 2 ? 106 ? Q9I2H0 22 ? 126 ? 22 126 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3NRF GLY A 1 ? UNP Q9I2H0 ? ? 'expression tag' 0 1 2 3NRF GLY B 1 ? UNP Q9I2H0 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CAC non-polymer . 'CACODYLATE ION' dimethylarsinate 'C2 H6 As O2 -1' 136.989 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MRD non-polymer . '(4R)-2-METHYLPENTANE-2,4-DIOL' ? 'C6 H14 O2' 118.174 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3NRF # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '40.000000000% MPD, 5.000000000% PEG-8000, 0.1M Cacodylate pH 6.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2010-05-12 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97936 1.0 3 0.97922 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91837,0.97936,0.97922 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3NRF _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 29.178 _reflns.number_all ? _reflns.number_obs 32823 _reflns.pdbx_Rsym_value 0.098 _reflns.pdbx_redundancy 4.400 _reflns.percent_possible_obs 98.400 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI 8.5 _reflns.B_iso_Wilson_estimate 16.852 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.5 _reflns_shell.d_res_low 1.54 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 95.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs 1.6 _reflns_shell.pdbx_Rsym_value 0.798 _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3NRF _refine.ls_d_res_high 1.500 _refine.ls_d_res_low 29.178 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.290 _refine.ls_number_reflns_obs 32812 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 5.(4R)-2-METHYL- 2,4-PENTANEDIOL (MRD),AND CACODYLATE (CAC) FROM THE CRYSTALLIZATION WERE MODELED INTO THE STRUCTURE. THE MODELING OF CACODYLATE IS SUPPORTED BY ANOMALOUS DIFFERENCE MAPS. 5. SOLVENT MOLECULES WERE EXCLUDED FROM THE ASSIGNMENT OF THE TLS GROUPS. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.186 _refine.ls_R_factor_R_work 0.184 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.222 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1666 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 24.291 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.210 _refine.aniso_B[2][2] -0.520 _refine.aniso_B[3][3] -0.680 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.946 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.084 _refine.overall_SU_ML 0.062 _refine.overall_SU_B 3.387 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 81.77 _refine.B_iso_min 8.61 _refine.occupancy_max 1.00 _refine.occupancy_min 0.33 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1508 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 212 _refine_hist.number_atoms_total 1749 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 29.178 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1706 0.016 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1155 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 2341 1.697 1.973 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2837 0.895 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 250 4.317 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 80 31.772 24.250 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 297 9.911 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 16 11.653 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 274 0.107 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1988 0.007 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 352 0.002 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1091 3.608 35.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 445 2.687 35.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1761 4.366 8.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 615 3.637 11.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 558 4.053 4.500 ? ? # _refine_ls_shell.d_res_high 1.502 _refine_ls_shell.d_res_low 1.541 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 96.650 _refine_ls_shell.number_reflns_R_work 2229 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.274 _refine_ls_shell.R_factor_R_free 0.310 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 108 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2337 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3NRF _struct.title 'Crystal structure of an apag protein (PA1934) from pseudomonas aeruginosa pao1 at 1.50 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, UNKNOWN FUNCTION' _struct_keywords.pdbx_keywords 'Structural Genomics, Unknown Function' _struct_keywords.entry_id 3NRF # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details 'CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A TETRAMER AS A SIGNIFICANT OLIGOMERIZATION STATE.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 67 ? ALA A 71 ? GLU A 87 ALA A 91 5 ? 5 HELX_P HELX_P2 2 ASP A 91 ? TYR A 94 ? ASP A 111 TYR A 114 5 ? 4 HELX_P HELX_P3 3 GLU B 67 ? ALA B 71 ? GLU B 87 ALA B 91 5 ? 5 HELX_P HELX_P4 4 ASP B 91 ? ALA B 96 ? ASP B 111 ALA B 116 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 49 SG ? ? ? 1_555 A CYS 105 SG ? ? A CYS 69 A CYS 125 1_555 ? ? ? ? ? ? ? 2.079 ? ? disulf2 disulf ? ? B CYS 49 SG ? ? ? 1_555 B CYS 105 SG ? ? B CYS 69 B CYS 125 1_555 ? ? ? ? ? ? ? 2.040 ? ? covale1 covale both ? A VAL 7 C ? ? ? 1_555 A MSE 8 N ? ? A VAL 27 A MSE 28 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 8 C ? ? ? 1_555 A VAL 9 N ? ? A MSE 28 A VAL 29 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale3 covale both ? B VAL 7 C ? ? ? 1_555 B MSE 8 N ? ? B VAL 27 B MSE 28 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale4 covale both ? B MSE 8 C ? ? ? 1_555 B VAL 9 N ? ? B MSE 28 B VAL 29 1_555 ? ? ? ? ? ? ? 1.321 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 12 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel A 10 11 ? anti-parallel A 11 12 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 96 ? SER A 102 ? ALA A 116 SER A 122 A 2 CYS A 49 ? SER A 54 ? CYS A 69 SER A 74 A 3 SER A 59 ? VAL A 65 ? SER A 79 VAL A 85 A 4 SER A 79 ? SER A 88 ? SER A 99 SER A 108 A 5 LYS A 24 ? VAL A 36 ? LYS A 44 VAL A 56 A 6 MSE A 8 ? VAL A 21 ? MSE A 28 VAL A 41 A 7 VAL B 7 ? VAL B 21 ? VAL B 27 VAL B 41 A 8 LYS B 24 ? ASN B 37 ? LYS B 44 ASN B 57 A 9 SER B 79 ? SER B 88 ? SER B 99 SER B 108 A 10 SER B 59 ? VAL B 65 ? SER B 79 VAL B 85 A 11 CYS B 49 ? GLN B 53 ? CYS B 69 GLN B 73 A 12 LEU B 98 ? SER B 102 ? LEU B 118 SER B 122 B 1 ILE A 43 ? SER A 44 ? ILE A 63 SER A 64 B 2 THR A 73 ? LEU A 74 ? THR A 93 LEU A 94 C 1 ILE B 43 ? SER B 44 ? ILE B 63 SER B 64 C 2 THR B 73 ? LEU B 74 ? THR B 93 LEU B 94 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 102 ? O SER A 122 N CYS A 49 ? N CYS A 69 A 2 3 N ALA A 52 ? N ALA A 72 O PHE A 60 ? O PHE A 80 A 3 4 N ASP A 63 ? N ASP A 83 O ILE A 85 ? O ILE A 105 A 4 5 O SER A 88 ? O SER A 108 N ARG A 27 ? N ARG A 47 A 5 6 O LYS A 24 ? O LYS A 44 N VAL A 21 ? N VAL A 41 A 6 7 N VAL A 9 ? N VAL A 29 O SER B 20 ? O SER B 40 A 7 8 N GLY B 14 ? N GLY B 34 O ALA B 30 ? O ALA B 50 A 8 9 N ARG B 27 ? N ARG B 47 O SER B 88 ? O SER B 108 A 9 10 O ILE B 85 ? O ILE B 105 N THR B 64 ? N THR B 84 A 10 11 O PHE B 60 ? O PHE B 80 N ALA B 52 ? N ALA B 72 A 11 12 N VAL B 51 ? N VAL B 71 O ARG B 100 ? O ARG B 120 B 1 2 N ILE A 43 ? N ILE A 63 O LEU A 74 ? O LEU A 94 C 1 2 N ILE B 43 ? N ILE B 63 O LEU B 74 ? O LEU B 94 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MRD 128 ? 4 'BINDING SITE FOR RESIDUE MRD A 128' AC2 Software B MRD 127 ? 2 'BINDING SITE FOR RESIDUE MRD B 127' AC3 Software B MRD 129 ? 3 'BINDING SITE FOR RESIDUE MRD B 129' AC4 Software B CAC 130 ? 9 'BINDING SITE FOR RESIDUE CAC B 130' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 PHE A 10 ? PHE A 30 . ? 1_555 ? 2 AC1 4 ARG A 12 ? ARG A 32 . ? 1_555 ? 3 AC1 4 LYS A 32 ? LYS A 52 . ? 1_555 ? 4 AC1 4 GLU A 81 ? GLU A 101 . ? 1_555 ? 5 AC2 2 LYS B 32 ? LYS B 52 . ? 1_555 ? 6 AC2 2 GLU B 81 ? GLU B 101 . ? 1_555 ? 7 AC3 3 THR B 64 ? THR B 84 . ? 1_555 ? 8 AC3 3 VAL B 65 ? VAL B 85 . ? 1_555 ? 9 AC3 3 ASP B 66 ? ASP B 86 . ? 1_555 ? 10 AC4 9 ARG A 100 ? ARG A 120 . ? 6_555 ? 11 AC4 9 SER A 102 ? SER A 122 . ? 6_555 ? 12 AC4 9 ARG A 104 ? ARG A 124 . ? 6_555 ? 13 AC4 9 HOH G . ? HOH A 311 . ? 6_555 ? 14 AC4 9 GLN B 53 ? GLN B 73 . ? 1_555 ? 15 AC4 9 SER B 59 ? SER B 79 . ? 1_555 ? 16 AC4 9 ARG B 100 ? ARG B 120 . ? 1_555 ? 17 AC4 9 SER B 102 ? SER B 122 . ? 1_555 ? 18 AC4 9 HOH H . ? HOH B 310 . ? 1_555 ? # _atom_sites.entry_id 3NRF _atom_sites.fract_transf_matrix[1][1] 0.014421 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010364 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016184 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol AS C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 ALA 2 22 ? ? ? A . n A 1 3 ALA 3 23 ? ? ? A . n A 1 4 PRO 4 24 ? ? ? A . n A 1 5 ASP 5 25 25 ASP ASP A . n A 1 6 ALA 6 26 26 ALA ALA A . n A 1 7 VAL 7 27 27 VAL VAL A . n A 1 8 MSE 8 28 28 MSE MSE A . n A 1 9 VAL 9 29 29 VAL VAL A . n A 1 10 PHE 10 30 30 PHE PHE A . n A 1 11 ALA 11 31 31 ALA ALA A . n A 1 12 ARG 12 32 32 ARG ARG A . n A 1 13 GLN 13 33 33 GLN GLN A . n A 1 14 GLY 14 34 34 GLY GLY A . n A 1 15 ASP 15 35 35 ASP ASP A . n A 1 16 LYS 16 36 36 LYS LYS A . n A 1 17 GLY 17 37 37 GLY GLY A . n A 1 18 SER 18 38 38 SER SER A . n A 1 19 VAL 19 39 39 VAL VAL A . n A 1 20 SER 20 40 40 SER SER A . n A 1 21 VAL 21 41 41 VAL VAL A . n A 1 22 GLY 22 42 42 GLY GLY A . n A 1 23 ASP 23 43 43 ASP ASP A . n A 1 24 LYS 24 44 44 LYS LYS A . n A 1 25 HIS 25 45 45 HIS HIS A . n A 1 26 PHE 26 46 46 PHE PHE A . n A 1 27 ARG 27 47 47 ARG ARG A . n A 1 28 THR 28 48 48 THR THR A . n A 1 29 GLN 29 49 49 GLN GLN A . n A 1 30 ALA 30 50 50 ALA ALA A . n A 1 31 PHE 31 51 51 PHE PHE A . n A 1 32 LYS 32 52 52 LYS LYS A . n A 1 33 VAL 33 53 53 VAL VAL A . n A 1 34 ARG 34 54 54 ARG ARG A . n A 1 35 LEU 35 55 55 LEU LEU A . n A 1 36 VAL 36 56 56 VAL VAL A . n A 1 37 ASN 37 57 57 ASN ASN A . n A 1 38 ALA 38 58 58 ALA ALA A . n A 1 39 ALA 39 59 59 ALA ALA A . n A 1 40 LYS 40 60 60 LYS LYS A . n A 1 41 SER 41 61 61 SER SER A . n A 1 42 GLU 42 62 62 GLU GLU A . n A 1 43 ILE 43 63 63 ILE ILE A . n A 1 44 SER 44 64 64 SER SER A . n A 1 45 LEU 45 65 65 LEU LEU A . n A 1 46 LYS 46 66 66 LYS LYS A . n A 1 47 ASN 47 67 67 ASN ASN A . n A 1 48 SER 48 68 68 SER SER A . n A 1 49 CYS 49 69 69 CYS CYS A . n A 1 50 LEU 50 70 70 LEU LEU A . n A 1 51 VAL 51 71 71 VAL VAL A . n A 1 52 ALA 52 72 72 ALA ALA A . n A 1 53 GLN 53 73 73 GLN GLN A . n A 1 54 SER 54 74 74 SER SER A . n A 1 55 ALA 55 75 75 ALA ALA A . n A 1 56 ALA 56 76 76 ALA ALA A . n A 1 57 GLY 57 77 77 GLY GLY A . n A 1 58 GLN 58 78 78 GLN GLN A . n A 1 59 SER 59 79 79 SER SER A . n A 1 60 PHE 60 80 80 PHE PHE A . n A 1 61 ARG 61 81 81 ARG ARG A . n A 1 62 LEU 62 82 82 LEU LEU A . n A 1 63 ASP 63 83 83 ASP ASP A . n A 1 64 THR 64 84 84 THR THR A . n A 1 65 VAL 65 85 85 VAL VAL A . n A 1 66 ASP 66 86 86 ASP ASP A . n A 1 67 GLU 67 87 87 GLU GLU A . n A 1 68 GLU 68 88 88 GLU GLU A . n A 1 69 LEU 69 89 89 LEU LEU A . n A 1 70 THR 70 90 90 THR THR A . n A 1 71 ALA 71 91 91 ALA ALA A . n A 1 72 ASP 72 92 92 ASP ASP A . n A 1 73 THR 73 93 93 THR THR A . n A 1 74 LEU 74 94 94 LEU LEU A . n A 1 75 LYS 75 95 95 LYS LYS A . n A 1 76 PRO 76 96 96 PRO PRO A . n A 1 77 GLY 77 97 97 GLY GLY A . n A 1 78 ALA 78 98 98 ALA ALA A . n A 1 79 SER 79 99 99 SER SER A . n A 1 80 VAL 80 100 100 VAL VAL A . n A 1 81 GLU 81 101 101 GLU GLU A . n A 1 82 GLY 82 102 102 GLY GLY A . n A 1 83 ASP 83 103 103 ASP ASP A . n A 1 84 ALA 84 104 104 ALA ALA A . n A 1 85 ILE 85 105 105 ILE ILE A . n A 1 86 PHE 86 106 106 PHE PHE A . n A 1 87 ALA 87 107 107 ALA ALA A . n A 1 88 SER 88 108 108 SER SER A . n A 1 89 GLU 89 109 109 GLU GLU A . n A 1 90 ASP 90 110 110 ASP ASP A . n A 1 91 ASP 91 111 111 ASP ASP A . n A 1 92 ALA 92 112 112 ALA ALA A . n A 1 93 VAL 93 113 113 VAL VAL A . n A 1 94 TYR 94 114 114 TYR TYR A . n A 1 95 GLY 95 115 115 GLY GLY A . n A 1 96 ALA 96 116 116 ALA ALA A . n A 1 97 SER 97 117 117 SER SER A . n A 1 98 LEU 98 118 118 LEU LEU A . n A 1 99 VAL 99 119 119 VAL VAL A . n A 1 100 ARG 100 120 120 ARG ARG A . n A 1 101 LEU 101 121 121 LEU LEU A . n A 1 102 SER 102 122 122 SER SER A . n A 1 103 ASP 103 123 123 ASP ASP A . n A 1 104 ARG 104 124 124 ARG ARG A . n A 1 105 CYS 105 125 125 CYS CYS A . n A 1 106 LYS 106 126 126 LYS LYS A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 ALA 2 22 ? ? ? B . n B 1 3 ALA 3 23 23 ALA ALA B . n B 1 4 PRO 4 24 24 PRO PRO B . n B 1 5 ASP 5 25 25 ASP ASP B . n B 1 6 ALA 6 26 26 ALA ALA B . n B 1 7 VAL 7 27 27 VAL VAL B . n B 1 8 MSE 8 28 28 MSE MSE B . n B 1 9 VAL 9 29 29 VAL VAL B . n B 1 10 PHE 10 30 30 PHE PHE B . n B 1 11 ALA 11 31 31 ALA ALA B . n B 1 12 ARG 12 32 32 ARG ARG B . n B 1 13 GLN 13 33 33 GLN GLN B . n B 1 14 GLY 14 34 34 GLY GLY B . n B 1 15 ASP 15 35 35 ASP ASP B . n B 1 16 LYS 16 36 36 LYS LYS B . n B 1 17 GLY 17 37 37 GLY GLY B . n B 1 18 SER 18 38 38 SER SER B . n B 1 19 VAL 19 39 39 VAL VAL B . n B 1 20 SER 20 40 40 SER SER B . n B 1 21 VAL 21 41 41 VAL VAL B . n B 1 22 GLY 22 42 42 GLY GLY B . n B 1 23 ASP 23 43 43 ASP ASP B . n B 1 24 LYS 24 44 44 LYS LYS B . n B 1 25 HIS 25 45 45 HIS HIS B . n B 1 26 PHE 26 46 46 PHE PHE B . n B 1 27 ARG 27 47 47 ARG ARG B . n B 1 28 THR 28 48 48 THR THR B . n B 1 29 GLN 29 49 49 GLN GLN B . n B 1 30 ALA 30 50 50 ALA ALA B . n B 1 31 PHE 31 51 51 PHE PHE B . n B 1 32 LYS 32 52 52 LYS LYS B . n B 1 33 VAL 33 53 53 VAL VAL B . n B 1 34 ARG 34 54 54 ARG ARG B . n B 1 35 LEU 35 55 55 LEU LEU B . n B 1 36 VAL 36 56 56 VAL VAL B . n B 1 37 ASN 37 57 57 ASN ASN B . n B 1 38 ALA 38 58 58 ALA ALA B . n B 1 39 ALA 39 59 59 ALA ALA B . n B 1 40 LYS 40 60 60 LYS LYS B . n B 1 41 SER 41 61 61 SER SER B . n B 1 42 GLU 42 62 62 GLU GLU B . n B 1 43 ILE 43 63 63 ILE ILE B . n B 1 44 SER 44 64 64 SER SER B . n B 1 45 LEU 45 65 65 LEU LEU B . n B 1 46 LYS 46 66 66 LYS LYS B . n B 1 47 ASN 47 67 67 ASN ASN B . n B 1 48 SER 48 68 68 SER SER B . n B 1 49 CYS 49 69 69 CYS CYS B . n B 1 50 LEU 50 70 70 LEU LEU B . n B 1 51 VAL 51 71 71 VAL VAL B . n B 1 52 ALA 52 72 72 ALA ALA B . n B 1 53 GLN 53 73 73 GLN GLN B . n B 1 54 SER 54 74 74 SER SER B . n B 1 55 ALA 55 75 75 ALA ALA B . n B 1 56 ALA 56 76 76 ALA ALA B . n B 1 57 GLY 57 77 77 GLY GLY B . n B 1 58 GLN 58 78 78 GLN GLN B . n B 1 59 SER 59 79 79 SER SER B . n B 1 60 PHE 60 80 80 PHE PHE B . n B 1 61 ARG 61 81 81 ARG ARG B . n B 1 62 LEU 62 82 82 LEU LEU B . n B 1 63 ASP 63 83 83 ASP ASP B . n B 1 64 THR 64 84 84 THR THR B . n B 1 65 VAL 65 85 85 VAL VAL B . n B 1 66 ASP 66 86 86 ASP ASP B . n B 1 67 GLU 67 87 87 GLU GLU B . n B 1 68 GLU 68 88 88 GLU GLU B . n B 1 69 LEU 69 89 89 LEU LEU B . n B 1 70 THR 70 90 90 THR THR B . n B 1 71 ALA 71 91 91 ALA ALA B . n B 1 72 ASP 72 92 92 ASP ASP B . n B 1 73 THR 73 93 93 THR THR B . n B 1 74 LEU 74 94 94 LEU LEU B . n B 1 75 LYS 75 95 95 LYS LYS B . n B 1 76 PRO 76 96 96 PRO PRO B . n B 1 77 GLY 77 97 97 GLY GLY B . n B 1 78 ALA 78 98 98 ALA ALA B . n B 1 79 SER 79 99 99 SER SER B . n B 1 80 VAL 80 100 100 VAL VAL B . n B 1 81 GLU 81 101 101 GLU GLU B . n B 1 82 GLY 82 102 102 GLY GLY B . n B 1 83 ASP 83 103 103 ASP ASP B . n B 1 84 ALA 84 104 104 ALA ALA B . n B 1 85 ILE 85 105 105 ILE ILE B . n B 1 86 PHE 86 106 106 PHE PHE B . n B 1 87 ALA 87 107 107 ALA ALA B . n B 1 88 SER 88 108 108 SER SER B . n B 1 89 GLU 89 109 109 GLU GLU B . n B 1 90 ASP 90 110 110 ASP ASP B . n B 1 91 ASP 91 111 111 ASP ASP B . n B 1 92 ALA 92 112 112 ALA ALA B . n B 1 93 VAL 93 113 113 VAL VAL B . n B 1 94 TYR 94 114 114 TYR TYR B . n B 1 95 GLY 95 115 115 GLY GLY B . n B 1 96 ALA 96 116 116 ALA ALA B . n B 1 97 SER 97 117 117 SER SER B . n B 1 98 LEU 98 118 118 LEU LEU B . n B 1 99 VAL 99 119 119 VAL VAL B . n B 1 100 ARG 100 120 120 ARG ARG B . n B 1 101 LEU 101 121 121 LEU LEU B . n B 1 102 SER 102 122 122 SER SER B . n B 1 103 ASP 103 123 123 ASP ASP B . n B 1 104 ARG 104 124 124 ARG ARG B . n B 1 105 CYS 105 125 125 CYS CYS B . n B 1 106 LYS 106 126 ? ? ? B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MRD 1 128 128 MRD MRD A . D 2 MRD 1 127 127 MRD MRD B . E 2 MRD 1 129 129 MRD MRD B . F 3 CAC 1 130 130 CAC CAC B . G 4 HOH 1 132 132 HOH HOH A . G 4 HOH 2 133 133 HOH HOH A . G 4 HOH 3 135 135 HOH HOH A . G 4 HOH 4 137 137 HOH HOH A . G 4 HOH 5 139 139 HOH HOH A . G 4 HOH 6 140 140 HOH HOH A . G 4 HOH 7 141 141 HOH HOH A . G 4 HOH 8 142 142 HOH HOH A . G 4 HOH 9 143 143 HOH HOH A . G 4 HOH 10 146 146 HOH HOH A . G 4 HOH 11 147 147 HOH HOH A . G 4 HOH 12 148 148 HOH HOH A . G 4 HOH 13 150 150 HOH HOH A . G 4 HOH 14 152 152 HOH HOH A . G 4 HOH 15 153 153 HOH HOH A . G 4 HOH 16 157 157 HOH HOH A . G 4 HOH 17 158 158 HOH HOH A . G 4 HOH 18 161 161 HOH HOH A . G 4 HOH 19 162 162 HOH HOH A . G 4 HOH 20 165 165 HOH HOH A . G 4 HOH 21 167 167 HOH HOH A . G 4 HOH 22 169 169 HOH HOH A . G 4 HOH 23 171 171 HOH HOH A . G 4 HOH 24 172 172 HOH HOH A . G 4 HOH 25 178 178 HOH HOH A . G 4 HOH 26 180 180 HOH HOH A . G 4 HOH 27 181 181 HOH HOH A . G 4 HOH 28 182 182 HOH HOH A . G 4 HOH 29 183 183 HOH HOH A . G 4 HOH 30 185 185 HOH HOH A . G 4 HOH 31 190 190 HOH HOH A . G 4 HOH 32 191 191 HOH HOH A . G 4 HOH 33 195 195 HOH HOH A . G 4 HOH 34 196 196 HOH HOH A . G 4 HOH 35 199 199 HOH HOH A . G 4 HOH 36 200 200 HOH HOH A . G 4 HOH 37 202 202 HOH HOH A . G 4 HOH 38 203 203 HOH HOH A . G 4 HOH 39 210 210 HOH HOH A . G 4 HOH 40 216 216 HOH HOH A . G 4 HOH 41 218 218 HOH HOH A . G 4 HOH 42 221 221 HOH HOH A . G 4 HOH 43 222 222 HOH HOH A . G 4 HOH 44 223 223 HOH HOH A . G 4 HOH 45 228 228 HOH HOH A . G 4 HOH 46 229 229 HOH HOH A . G 4 HOH 47 230 230 HOH HOH A . G 4 HOH 48 231 231 HOH HOH A . G 4 HOH 49 232 232 HOH HOH A . G 4 HOH 50 233 233 HOH HOH A . G 4 HOH 51 234 234 HOH HOH A . G 4 HOH 52 238 238 HOH HOH A . G 4 HOH 53 240 240 HOH HOH A . G 4 HOH 54 243 243 HOH HOH A . G 4 HOH 55 244 244 HOH HOH A . G 4 HOH 56 245 245 HOH HOH A . G 4 HOH 57 247 247 HOH HOH A . G 4 HOH 58 248 248 HOH HOH A . G 4 HOH 59 251 251 HOH HOH A . G 4 HOH 60 252 252 HOH HOH A . G 4 HOH 61 256 256 HOH HOH A . G 4 HOH 62 257 257 HOH HOH A . G 4 HOH 63 259 259 HOH HOH A . G 4 HOH 64 261 261 HOH HOH A . G 4 HOH 65 263 263 HOH HOH A . G 4 HOH 66 265 265 HOH HOH A . G 4 HOH 67 267 267 HOH HOH A . G 4 HOH 68 268 268 HOH HOH A . G 4 HOH 69 269 269 HOH HOH A . G 4 HOH 70 270 270 HOH HOH A . G 4 HOH 71 271 271 HOH HOH A . G 4 HOH 72 275 275 HOH HOH A . G 4 HOH 73 276 276 HOH HOH A . G 4 HOH 74 277 277 HOH HOH A . G 4 HOH 75 278 278 HOH HOH A . G 4 HOH 76 279 279 HOH HOH A . G 4 HOH 77 280 280 HOH HOH A . G 4 HOH 78 281 281 HOH HOH A . G 4 HOH 79 282 282 HOH HOH A . G 4 HOH 80 283 283 HOH HOH A . G 4 HOH 81 284 284 HOH HOH A . G 4 HOH 82 285 285 HOH HOH A . G 4 HOH 83 286 286 HOH HOH A . G 4 HOH 84 287 287 HOH HOH A . G 4 HOH 85 288 288 HOH HOH A . G 4 HOH 86 289 289 HOH HOH A . G 4 HOH 87 290 290 HOH HOH A . G 4 HOH 88 291 291 HOH HOH A . G 4 HOH 89 300 300 HOH HOH A . G 4 HOH 90 301 301 HOH HOH A . G 4 HOH 91 305 305 HOH HOH A . G 4 HOH 92 306 306 HOH HOH A . G 4 HOH 93 309 309 HOH HOH A . G 4 HOH 94 311 311 HOH HOH A . G 4 HOH 95 312 312 HOH HOH A . G 4 HOH 96 314 314 HOH HOH A . G 4 HOH 97 315 315 HOH HOH A . G 4 HOH 98 319 319 HOH HOH A . G 4 HOH 99 320 320 HOH HOH A . G 4 HOH 100 321 321 HOH HOH A . G 4 HOH 101 322 322 HOH HOH A . G 4 HOH 102 323 323 HOH HOH A . G 4 HOH 103 325 325 HOH HOH A . G 4 HOH 104 326 326 HOH HOH A . G 4 HOH 105 327 327 HOH HOH A . G 4 HOH 106 328 328 HOH HOH A . G 4 HOH 107 329 329 HOH HOH A . G 4 HOH 108 332 332 HOH HOH A . G 4 HOH 109 334 334 HOH HOH A . G 4 HOH 110 335 335 HOH HOH A . G 4 HOH 111 336 336 HOH HOH A . G 4 HOH 112 337 337 HOH HOH A . G 4 HOH 113 339 339 HOH HOH A . G 4 HOH 114 340 340 HOH HOH A . G 4 HOH 115 342 342 HOH HOH A . H 4 HOH 1 131 131 HOH HOH B . H 4 HOH 2 134 134 HOH HOH B . H 4 HOH 3 136 136 HOH HOH B . H 4 HOH 4 138 138 HOH HOH B . H 4 HOH 5 144 144 HOH HOH B . H 4 HOH 6 145 145 HOH HOH B . H 4 HOH 7 149 149 HOH HOH B . H 4 HOH 8 151 151 HOH HOH B . H 4 HOH 9 154 154 HOH HOH B . H 4 HOH 10 155 155 HOH HOH B . H 4 HOH 11 156 156 HOH HOH B . H 4 HOH 12 159 159 HOH HOH B . H 4 HOH 13 160 160 HOH HOH B . H 4 HOH 14 163 163 HOH HOH B . H 4 HOH 15 164 164 HOH HOH B . H 4 HOH 16 166 166 HOH HOH B . H 4 HOH 17 168 168 HOH HOH B . H 4 HOH 18 170 170 HOH HOH B . H 4 HOH 19 173 173 HOH HOH B . H 4 HOH 20 174 174 HOH HOH B . H 4 HOH 21 175 175 HOH HOH B . H 4 HOH 22 176 176 HOH HOH B . H 4 HOH 23 177 177 HOH HOH B . H 4 HOH 24 179 179 HOH HOH B . H 4 HOH 25 184 184 HOH HOH B . H 4 HOH 26 186 186 HOH HOH B . H 4 HOH 27 187 187 HOH HOH B . H 4 HOH 28 188 188 HOH HOH B . H 4 HOH 29 189 189 HOH HOH B . H 4 HOH 30 192 192 HOH HOH B . H 4 HOH 31 193 193 HOH HOH B . H 4 HOH 32 194 194 HOH HOH B . H 4 HOH 33 197 197 HOH HOH B . H 4 HOH 34 198 198 HOH HOH B . H 4 HOH 35 201 201 HOH HOH B . H 4 HOH 36 204 204 HOH HOH B . H 4 HOH 37 205 205 HOH HOH B . H 4 HOH 38 206 206 HOH HOH B . H 4 HOH 39 207 207 HOH HOH B . H 4 HOH 40 208 208 HOH HOH B . H 4 HOH 41 209 209 HOH HOH B . H 4 HOH 42 211 211 HOH HOH B . H 4 HOH 43 212 212 HOH HOH B . H 4 HOH 44 213 213 HOH HOH B . H 4 HOH 45 214 214 HOH HOH B . H 4 HOH 46 215 215 HOH HOH B . H 4 HOH 47 217 217 HOH HOH B . H 4 HOH 48 219 219 HOH HOH B . H 4 HOH 49 220 220 HOH HOH B . H 4 HOH 50 224 224 HOH HOH B . H 4 HOH 51 225 225 HOH HOH B . H 4 HOH 52 226 226 HOH HOH B . H 4 HOH 53 227 227 HOH HOH B . H 4 HOH 54 235 235 HOH HOH B . H 4 HOH 55 236 236 HOH HOH B . H 4 HOH 56 237 237 HOH HOH B . H 4 HOH 57 239 239 HOH HOH B . H 4 HOH 58 241 241 HOH HOH B . H 4 HOH 59 242 242 HOH HOH B . H 4 HOH 60 246 246 HOH HOH B . H 4 HOH 61 249 249 HOH HOH B . H 4 HOH 62 250 250 HOH HOH B . H 4 HOH 63 253 253 HOH HOH B . H 4 HOH 64 254 254 HOH HOH B . H 4 HOH 65 255 255 HOH HOH B . H 4 HOH 66 258 258 HOH HOH B . H 4 HOH 67 260 260 HOH HOH B . H 4 HOH 68 262 262 HOH HOH B . H 4 HOH 69 264 264 HOH HOH B . H 4 HOH 70 266 266 HOH HOH B . H 4 HOH 71 272 272 HOH HOH B . H 4 HOH 72 273 273 HOH HOH B . H 4 HOH 73 274 274 HOH HOH B . H 4 HOH 74 292 292 HOH HOH B . H 4 HOH 75 293 293 HOH HOH B . H 4 HOH 76 294 294 HOH HOH B . H 4 HOH 77 295 295 HOH HOH B . H 4 HOH 78 296 296 HOH HOH B . H 4 HOH 79 297 297 HOH HOH B . H 4 HOH 80 298 298 HOH HOH B . H 4 HOH 81 299 299 HOH HOH B . H 4 HOH 82 302 302 HOH HOH B . H 4 HOH 83 303 303 HOH HOH B . H 4 HOH 84 304 304 HOH HOH B . H 4 HOH 85 307 307 HOH HOH B . H 4 HOH 86 308 308 HOH HOH B . H 4 HOH 87 310 310 HOH HOH B . H 4 HOH 88 313 313 HOH HOH B . H 4 HOH 89 316 316 HOH HOH B . H 4 HOH 90 317 317 HOH HOH B . H 4 HOH 91 318 318 HOH HOH B . H 4 HOH 92 324 324 HOH HOH B . H 4 HOH 93 330 330 HOH HOH B . H 4 HOH 94 331 331 HOH HOH B . H 4 HOH 95 333 333 HOH HOH B . H 4 HOH 96 338 338 HOH HOH B . H 4 HOH 97 341 341 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 8 A MSE 28 ? MET SELENOMETHIONINE 2 B MSE 8 B MSE 28 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6160 ? 1 MORE 0 ? 1 'SSA (A^2)' 21530 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_656 -x+1,y,-z+3/2 -1.0000000000 0.0000000000 0.0000000000 69.3430000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 92.6820000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-07-28 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-07-20 4 'Structure model' 1 3 2011-11-16 5 'Structure model' 1 4 2017-11-08 6 'Structure model' 1 5 2019-07-17 7 'Structure model' 1 6 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' 'Refinement description' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Derived calculations' 7 6 'Structure model' 'Refinement description' 8 7 'Structure model' 'Database references' 9 7 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' software 2 6 'Structure model' software 3 6 'Structure model' struct_conn 4 7 'Structure model' database_2 5 7 'Structure model' struct_ref_seq_dif 6 7 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.classification' 2 5 'Structure model' '_software.name' 3 6 'Structure model' '_software.classification' 4 6 'Structure model' '_software.contact_author' 5 6 'Structure model' '_software.contact_author_email' 6 6 'Structure model' '_software.language' 7 6 'Structure model' '_software.location' 8 6 'Structure model' '_software.name' 9 6 'Structure model' '_software.type' 10 6 'Structure model' '_software.version' 11 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 7 'Structure model' '_database_2.pdbx_DOI' 13 7 'Structure model' '_database_2.pdbx_database_accession' 14 7 'Structure model' '_struct_ref_seq_dif.details' 15 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 30.4095 13.1912 27.0536 0.0394 0.0594 0.0592 0.0081 -0.0203 0.0018 1.8374 1.1659 0.5640 0.5720 -0.2835 -0.1165 0.0537 -0.0348 -0.0189 0.0926 -0.0781 0.0551 -0.0764 -0.0278 -0.0539 'X-RAY DIFFRACTION' 2 ? refined 14.9751 13.3357 51.5627 0.0726 0.0472 0.0647 0.0119 -0.0175 -0.0028 0.6488 1.0837 1.7229 0.1956 -0.2165 0.2822 0.1137 -0.0088 -0.1049 -0.0855 -0.0644 0.1332 0.1987 0.1206 -0.0389 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 25 A 126 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 23 B 125 ? . . . . ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0110 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA 3.3.15 2009/03/31 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 autoSHARP . ? ? ? ? phasing ? ? ? 8 # _pdbx_entry_details.entry_id 3NRF _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT (RESIDUES 22-126) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP B 25 ? ? -82.37 48.30 2 1 ASP B 110 ? ? -100.12 -157.64 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 25 ? CG ? A ASP 5 CG 2 1 Y 1 A ASP 25 ? OD1 ? A ASP 5 OD1 3 1 Y 1 A ASP 25 ? OD2 ? A ASP 5 OD2 4 1 Y 1 A LYS 60 ? CG ? A LYS 40 CG 5 1 Y 1 A LYS 60 ? CD ? A LYS 40 CD 6 1 Y 1 A LYS 60 ? CE ? A LYS 40 CE 7 1 Y 1 A LYS 60 ? NZ ? A LYS 40 NZ 8 1 Y 1 A LYS 126 ? CG ? A LYS 106 CG 9 1 Y 1 A LYS 126 ? CD ? A LYS 106 CD 10 1 Y 1 A LYS 126 ? CE ? A LYS 106 CE 11 1 Y 1 A LYS 126 ? NZ ? A LYS 106 NZ 12 1 Y 1 B ARG 32 ? CZ ? B ARG 12 CZ 13 1 Y 1 B ARG 32 ? NH1 ? B ARG 12 NH1 14 1 Y 1 B ARG 32 ? NH2 ? B ARG 12 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A ALA 22 ? A ALA 2 3 1 Y 1 A ALA 23 ? A ALA 3 4 1 Y 1 A PRO 24 ? A PRO 4 5 1 Y 1 B GLY 0 ? B GLY 1 6 1 Y 1 B ALA 22 ? B ALA 2 7 1 Y 1 B LYS 126 ? B LYS 106 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4R)-2-METHYLPENTANE-2,4-DIOL' MRD 3 'CACODYLATE ION' CAC 4 water HOH #