HEADER VIRAL PROTEIN 03-JUL-10 3NTE TITLE CRYSTAL STRUCTURE OF THE WILD-TYPE FULL-LENGTH HIV-1 CAPSID PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 CAPSID PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 133-353; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: HIV-1; SOURCE 5 GENE: CA, GAG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS WILD TYPE VIRAL PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.BETTS,J.I.YEH REVDAT 4 06-SEP-23 3NTE 1 REMARK LINK REVDAT 3 08-NOV-17 3NTE 1 REMARK REVDAT 2 02-JUL-14 3NTE 1 JRNL VERSN REVDAT 1 01-DEC-10 3NTE 0 JRNL AUTH S.DU,L.BETTS,R.YANG,H.SHI,J.CONCEL,J.AHN,C.AIKEN,P.ZHANG, JRNL AUTH 2 J.I.YEH JRNL TITL STRUCTURE OF THE HIV-1 FULL-LENGTH CAPSID PROTEIN IN A JRNL TITL 2 CONFORMATIONALLY TRAPPED UNASSEMBLED STATE INDUCED BY JRNL TITL 3 SMALL-MOLECULE BINDING. JRNL REF J.MOL.BIOL. V. 406 371 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21146540 JRNL DOI 10.1016/J.JMB.2010.11.027 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.1_336 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 31042 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1578 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0515 - 4.1922 0.99 3097 182 0.1786 0.2315 REMARK 3 2 4.1922 - 3.3290 1.00 3124 178 0.1651 0.2031 REMARK 3 3 3.3290 - 2.9087 1.00 3079 181 0.2144 0.2720 REMARK 3 4 2.9087 - 2.6429 1.00 3102 164 0.2182 0.3018 REMARK 3 5 2.6429 - 2.4536 1.00 3123 158 0.2153 0.2564 REMARK 3 6 2.4536 - 2.3090 1.00 3081 165 0.2226 0.2557 REMARK 3 7 2.3090 - 2.1934 0.98 3048 141 0.2390 0.3313 REMARK 3 8 2.1934 - 2.0980 0.95 2934 152 0.2411 0.2826 REMARK 3 9 2.0980 - 2.0172 0.84 2621 134 0.2448 0.2958 REMARK 3 10 2.0172 - 1.9500 0.72 2255 123 0.2644 0.3186 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 39.75 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.93740 REMARK 3 B22 (A**2) : -5.90860 REMARK 3 B33 (A**2) : 1.97120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -8.48880 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3539 REMARK 3 ANGLE : 1.093 4811 REMARK 3 CHIRALITY : 0.072 543 REMARK 3 PLANARITY : 0.006 627 REMARK 3 DIHEDRAL : 16.649 1345 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND ((RESSEQ 1:142)) REMARK 3 ORIGIN FOR THE GROUP (A): -32.5284 -8.1934 12.3370 REMARK 3 T TENSOR REMARK 3 T11: 0.1672 T22: 0.1776 REMARK 3 T33: 0.2188 T12: -0.0294 REMARK 3 T13: 0.0279 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.9039 L22: 1.7208 REMARK 3 L33: 2.0521 L12: -0.2517 REMARK 3 L13: -0.1793 L23: 0.5950 REMARK 3 S TENSOR REMARK 3 S11: -0.0611 S12: -0.0732 S13: -0.0454 REMARK 3 S21: 0.0213 S22: -0.0386 S23: 0.1702 REMARK 3 S31: 0.2170 S32: -0.0645 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND ((RESSEQ 143:225)) REMARK 3 ORIGIN FOR THE GROUP (A): -45.2259 19.4149 -10.5330 REMARK 3 T TENSOR REMARK 3 T11: 0.2679 T22: 0.3281 REMARK 3 T33: 0.3313 T12: -0.0194 REMARK 3 T13: -0.0273 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.0075 L22: 0.3145 REMARK 3 L33: 0.9566 L12: 0.7073 REMARK 3 L13: 0.3191 L23: 0.6449 REMARK 3 S TENSOR REMARK 3 S11: -0.1189 S12: 0.1622 S13: 0.1716 REMARK 3 S21: -0.3472 S22: 0.1326 S23: 0.0450 REMARK 3 S31: -0.0923 S32: 0.1109 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 1:142)) REMARK 3 ORIGIN FOR THE GROUP (A): -31.9001 36.9256 5.5124 REMARK 3 T TENSOR REMARK 3 T11: 0.1538 T22: 0.1046 REMARK 3 T33: 0.1152 T12: 0.0422 REMARK 3 T13: 0.0044 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 2.3121 L22: 1.7380 REMARK 3 L33: 2.0591 L12: 0.9593 REMARK 3 L13: -0.0541 L23: -0.7349 REMARK 3 S TENSOR REMARK 3 S11: -0.0333 S12: 0.1040 S13: 0.1659 REMARK 3 S21: 0.1682 S22: 0.0280 S23: -0.0177 REMARK 3 S31: -0.2437 S32: -0.0633 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 146:221)) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5087 6.7670 28.7669 REMARK 3 T TENSOR REMARK 3 T11: 0.2891 T22: 0.2390 REMARK 3 T33: 0.1998 T12: -0.0136 REMARK 3 T13: -0.0060 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.7501 L22: 0.5013 REMARK 3 L33: 1.0969 L12: 0.0485 REMARK 3 L13: -0.0398 L23: 0.3641 REMARK 3 S TENSOR REMARK 3 S11: -0.1200 S12: -0.0593 S13: 0.1547 REMARK 3 S21: 0.1557 S22: -0.0320 S23: -0.0701 REMARK 3 S31: 0.0175 S32: 0.0858 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NTE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060256. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31847 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.50100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1AK4, 1A43 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9-12% PEG 3350, 0.2 M SODIUM IODIDE, REMARK 280 0.1 M BIS-TRIS-PROPANE PH 6.5, 0.01 M IRON(III) CHLORIDE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.26600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -268.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -47.91000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 43.26600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -251.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE B 91 REMARK 465 ALA B 92 REMARK 465 PRO B 93 REMARK 465 GLY B 94 REMARK 465 GLN B 95 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 7 O REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 112 OE1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 30 46.23 -94.87 REMARK 500 ALA A 31 -104.20 4.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 240 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 57 OD1 REMARK 620 2 ASN A 57 ND2 60.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 238 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 262 O REMARK 620 2 HOH B 281 O 66.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 242 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 278 O REMARK 620 2 HOH B 261 O 108.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 244 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 341 O REMARK 620 2 HOH A 342 O 89.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 228 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 74 OD1 REMARK 620 2 HOH B 305 O 117.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 224 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 225 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 226 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE I3M A 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 235 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 242 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 243 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 244 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 245 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 224 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 226 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE I3M B 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 235 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 238 DBREF 3NTE A 1 221 UNP Q77YG1 Q77YG1_9HIV1 133 353 DBREF 3NTE B 1 221 UNP Q77YG1 Q77YG1_9HIV1 133 353 SEQRES 1 A 221 PRO ILE VAL GLN ASN ILE GLN GLY GLN MET VAL HIS GLN SEQRES 2 A 221 ALA ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 A 221 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 A 221 PHE SER ALA LEU SER GLU GLY ALA THR PRO GLN ASP LEU SEQRES 5 A 221 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 A 221 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 A 221 GLU TRP ASP ARG VAL HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 A 221 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 A 221 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 A 221 MET THR ASN ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 A 221 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 A 221 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 A 221 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 A 221 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 A 221 ASN TRP MET THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 A 221 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO ALA SEQRES 17 A 221 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 1 B 221 PRO ILE VAL GLN ASN ILE GLN GLY GLN MET VAL HIS GLN SEQRES 2 B 221 ALA ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 B 221 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 B 221 PHE SER ALA LEU SER GLU GLY ALA THR PRO GLN ASP LEU SEQRES 5 B 221 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 B 221 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 B 221 GLU TRP ASP ARG VAL HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 B 221 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 B 221 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 B 221 MET THR ASN ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 B 221 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 B 221 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 B 221 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 B 221 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 B 221 ASN TRP MET THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 B 221 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO ALA SEQRES 17 B 221 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL HET IOD A 222 1 HET IOD A 223 1 HET IOD A 224 1 HET IOD A 225 1 HET IOD A 226 1 HET IOD A 227 1 HET IOD A 228 1 HET IOD A 229 1 HET IOD A 230 1 HET IOD A 231 1 HET IOD A 232 1 HET IOD A 233 1 HET I3M A 234 3 HET FE A 235 1 HET FE A 236 1 HET FE A 237 1 HET FE A 238 1 HET FE A 239 1 HET FE A 240 1 HET FE A 241 1 HET FE A 242 1 HET FE A 243 1 HET FE A 244 1 HET FE A 245 1 HET FE A 246 1 HET FE A 247 1 HET IOD B 222 1 HET IOD B 223 1 HET IOD B 224 1 HET IOD B 225 1 HET IOD B 226 1 HET I3M B 227 3 HET FE B 228 1 HET FE B 229 1 HET FE B 230 1 HET FE B 231 1 HET FE B 232 1 HET FE B 233 1 HET FE B 234 1 HET FE B 235 1 HET FE B 236 1 HET FE B 237 1 HET NA B 238 1 HETNAM IOD IODIDE ION HETNAM I3M TRI-IODODE ANION HETNAM FE FE (III) ION HETNAM NA SODIUM ION FORMUL 3 IOD 17(I 1-) FORMUL 15 I3M 2(I3 1-) FORMUL 16 FE 23(FE 3+) FORMUL 45 NA NA 1+ FORMUL 46 HOH *225(H2 O) HELIX 1 1 SER A 16 LYS A 30 1 15 HELIX 2 2 GLU A 35 SER A 44 1 10 HELIX 3 3 THR A 48 VAL A 59 1 12 HELIX 4 4 HIS A 62 HIS A 84 1 23 HELIX 5 5 ARG A 100 ALA A 105 1 6 HELIX 6 6 THR A 110 THR A 119 1 10 HELIX 7 7 PRO A 125 SER A 146 1 22 HELIX 8 8 PRO A 147 ILE A 153 5 7 HELIX 9 9 PRO A 160 GLU A 175 1 16 HELIX 10 10 SER A 178 THR A 188 1 11 HELIX 11 11 THR A 188 ASN A 193 1 6 HELIX 12 12 ASN A 195 LYS A 203 1 9 HELIX 13 13 THR A 210 GLN A 219 1 10 HELIX 14 14 SER B 16 ALA B 31 1 16 HELIX 15 15 GLU B 35 SER B 44 1 10 HELIX 16 16 THR B 48 VAL B 59 1 12 HELIX 17 17 HIS B 62 HIS B 84 1 23 HELIX 18 18 ARG B 100 ALA B 105 1 6 HELIX 19 19 THR B 110 THR B 119 1 10 HELIX 20 20 PRO B 125 SER B 146 1 22 HELIX 21 21 PRO B 147 ASP B 152 1 6 HELIX 22 22 PRO B 160 GLU B 175 1 16 HELIX 23 23 SER B 178 ASN B 193 1 16 HELIX 24 24 ASN B 195 ALA B 204 1 10 HELIX 25 25 THR B 210 GLN B 219 1 10 SHEET 1 A 2 ILE A 2 GLN A 4 0 SHEET 2 A 2 MET A 10 HIS A 12 -1 O VAL A 11 N VAL A 3 SHEET 1 B 2 ILE B 2 GLN B 4 0 SHEET 2 B 2 MET B 10 HIS B 12 -1 O VAL B 11 N VAL B 3 SSBOND 1 CYS A 198 CYS A 218 1555 1555 2.04 SSBOND 2 CYS B 198 CYS B 218 1555 1555 2.03 LINK OD1 ASN A 57 FE FE A 240 1555 1555 2.22 LINK ND2 ASN A 57 FE FE A 240 1555 1555 2.22 LINK FE FE A 235 O HOH A 323 1555 1555 2.55 LINK FE FE A 238 O HOH B 262 1555 1555 2.70 LINK FE FE A 238 O HOH B 281 1555 1555 2.08 LINK FE FE A 241 O HOH A 331 1555 1555 1.97 LINK FE FE A 242 O HOH A 278 1555 1555 2.70 LINK FE FE A 242 O HOH B 261 1555 1555 2.17 LINK FE FE A 243 O HOH A 260 1555 1555 2.66 LINK FE FE A 244 O HOH A 341 1555 1555 2.48 LINK FE FE A 244 O HOH A 342 1555 1555 2.50 LINK FE FE A 246 O HOH A 376 1555 1555 2.70 LINK OD1 ASN B 74 FE FE B 228 1555 1555 2.58 LINK OE1 GLU B 128 FE FE B 235 1555 1555 2.27 LINK FE FE B 228 O HOH B 305 1555 1555 1.88 LINK FE FE B 229 O HOH B 258 1555 1555 2.75 LINK FE FE B 231 O HOH B 260 1555 1555 2.63 LINK FE FE B 234 O HOH B 285 1555 1555 2.63 LINK FE FE B 237 O HOH B 247 1555 1555 2.44 CISPEP 1 ASN A 121 PRO A 122 0 -0.06 CISPEP 2 ASN B 121 PRO B 122 0 3.72 SITE 1 AC1 1 SER A 178 SITE 1 AC2 3 IOD A 230 FE A 243 HOH A 260 SITE 1 AC3 2 HOH A 302 HOH B 281 SITE 1 AC4 2 PRO A 1 HOH A 341 SITE 1 AC5 2 ARG A 173 LYS A 182 SITE 1 AC6 2 LYS A 158 FE A 239 SITE 1 AC7 1 FE A 241 SITE 1 AC8 3 ASN A 74 HOH A 332 HOH A 333 SITE 1 AC9 2 ILE A 129 IOD A 223 SITE 1 BC1 3 ILE A 37 HOH A 321 HOH A 336 SITE 1 BC2 2 FE A 245 FE A 247 SITE 1 BC3 2 FE A 247 HOH A 260 SITE 1 BC4 3 VAL A 142 HOH A 265 HOH A 325 SITE 1 BC5 1 HOH A 323 SITE 1 BC6 5 MET A 118 PRO A 125 GLY A 127 GLU A 128 SITE 2 BC6 5 HOH A 312 SITE 1 BC7 5 GLU A 35 PRO B 34 VAL B 142 HOH B 262 SITE 2 BC7 5 HOH B 281 SITE 1 BC8 1 IOD A 227 SITE 1 BC9 2 ASN A 53 ASN A 57 SITE 1 CC1 2 IOD A 228 HOH A 331 SITE 1 CC2 2 HOH A 278 HOH B 261 SITE 1 CC3 2 IOD A 223 HOH A 260 SITE 1 CC4 5 ILE A 15 SER A 16 THR A 19 HOH A 341 SITE 2 CC4 5 HOH A 342 SITE 1 CC5 1 IOD A 232 SITE 1 CC6 2 HIS A 87 HOH A 376 SITE 1 CC7 2 IOD A 232 IOD A 233 SITE 1 CC8 1 ILE B 6 SITE 1 CC9 1 SER B 178 SITE 1 DC1 4 PRO B 157 LYS B 158 GLU B 159 HOH B 265 SITE 1 DC2 1 HIS B 62 SITE 1 DC3 2 PHE B 32 HOH B 295 SITE 1 DC4 2 ASN B 74 HOH B 305 SITE 1 DC5 5 MET B 118 PRO B 125 GLY B 127 GLU B 128 SITE 2 DC5 5 HOH B 258 SITE 1 DC6 1 ARG B 162 SITE 1 DC7 1 HOH B 260 SITE 1 DC8 2 HOH A 250 ARG B 173 SITE 1 DC9 2 ARG B 132 HOH B 285 SITE 1 EC1 3 GLY B 46 GLU B 128 LYS B 131 SITE 1 EC2 4 ASP A 163 HOH A 288 GLY B 220 HOH B 290 SITE 1 EC3 2 ILE B 124 HOH B 247 SITE 1 EC4 1 ASN B 74 CRYST1 47.910 86.532 55.589 90.00 99.73 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020872 0.000000 0.003581 0.00000 SCALE2 0.000000 0.011556 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018252 0.00000