data_3NWG # _entry.id 3NWG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3NWG RCSB RCSB060364 WWPDB D_1000060364 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC92146 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3NWG _pdbx_database_status.recvd_initial_deposition_date 2010-07-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fan, Y.' 1 'Volkart, L.' 2 'Gu, M.' 3 'Axen, S.' 4 'Greenleaf, W.B.' 5 'Kerfeld, C.' 6 'Joachimiak, A.' 7 'Midwest Center for Structural Genomics (MCSG)' 8 # _citation.id primary _citation.title 'Structure of a PduT homolog from a novel bacterial microcompartment' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Greenleaf, W.B.' 1 primary 'Fan, Y.' 2 primary 'Axen, S.' 3 primary 'Volkart, L.' 4 primary 'Gu, M.' 5 primary 'Joachimiak, A.' 6 primary 'Kerfeld, C.' 7 # _cell.entry_id 3NWG _cell.length_a 104.862 _cell.length_b 104.862 _cell.length_c 81.309 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NWG _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Microcompartments protein' 18957.252 1 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 3 water nat water 18.015 36 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;A(MSE)ESIGLVEVNSIARGIEAADA(MSE)LKAAQVDLLEAKPVCPGKYIVLICGDVAAVQSSVTAGKT(MSE)AAHSV LDDFILPNVHPQVLTAISAATPLTLIKALGIIETFSIASLIVAADTAAKTGQVDLVEIRIG(MSE)GIGGKSFVTLTGDV ASVESSVAAGV(MSE)LASERG(MSE)LVDKVVIPSPHDHLKRCLC ; _entity_poly.pdbx_seq_one_letter_code_can ;AMESIGLVEVNSIARGIEAADAMLKAAQVDLLEAKPVCPGKYIVLICGDVAAVQSSVTAGKTMAAHSVLDDFILPNVHPQ VLTAISAATPLTLIKALGIIETFSIASLIVAADTAAKTGQVDLVEIRIGMGIGGKSFVTLTGDVASVESSVAAGVMLASE RGMLVDKVVIPSPHDHLKRCLC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC92146 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 MSE n 1 3 GLU n 1 4 SER n 1 5 ILE n 1 6 GLY n 1 7 LEU n 1 8 VAL n 1 9 GLU n 1 10 VAL n 1 11 ASN n 1 12 SER n 1 13 ILE n 1 14 ALA n 1 15 ARG n 1 16 GLY n 1 17 ILE n 1 18 GLU n 1 19 ALA n 1 20 ALA n 1 21 ASP n 1 22 ALA n 1 23 MSE n 1 24 LEU n 1 25 LYS n 1 26 ALA n 1 27 ALA n 1 28 GLN n 1 29 VAL n 1 30 ASP n 1 31 LEU n 1 32 LEU n 1 33 GLU n 1 34 ALA n 1 35 LYS n 1 36 PRO n 1 37 VAL n 1 38 CYS n 1 39 PRO n 1 40 GLY n 1 41 LYS n 1 42 TYR n 1 43 ILE n 1 44 VAL n 1 45 LEU n 1 46 ILE n 1 47 CYS n 1 48 GLY n 1 49 ASP n 1 50 VAL n 1 51 ALA n 1 52 ALA n 1 53 VAL n 1 54 GLN n 1 55 SER n 1 56 SER n 1 57 VAL n 1 58 THR n 1 59 ALA n 1 60 GLY n 1 61 LYS n 1 62 THR n 1 63 MSE n 1 64 ALA n 1 65 ALA n 1 66 HIS n 1 67 SER n 1 68 VAL n 1 69 LEU n 1 70 ASP n 1 71 ASP n 1 72 PHE n 1 73 ILE n 1 74 LEU n 1 75 PRO n 1 76 ASN n 1 77 VAL n 1 78 HIS n 1 79 PRO n 1 80 GLN n 1 81 VAL n 1 82 LEU n 1 83 THR n 1 84 ALA n 1 85 ILE n 1 86 SER n 1 87 ALA n 1 88 ALA n 1 89 THR n 1 90 PRO n 1 91 LEU n 1 92 THR n 1 93 LEU n 1 94 ILE n 1 95 LYS n 1 96 ALA n 1 97 LEU n 1 98 GLY n 1 99 ILE n 1 100 ILE n 1 101 GLU n 1 102 THR n 1 103 PHE n 1 104 SER n 1 105 ILE n 1 106 ALA n 1 107 SER n 1 108 LEU n 1 109 ILE n 1 110 VAL n 1 111 ALA n 1 112 ALA n 1 113 ASP n 1 114 THR n 1 115 ALA n 1 116 ALA n 1 117 LYS n 1 118 THR n 1 119 GLY n 1 120 GLN n 1 121 VAL n 1 122 ASP n 1 123 LEU n 1 124 VAL n 1 125 GLU n 1 126 ILE n 1 127 ARG n 1 128 ILE n 1 129 GLY n 1 130 MSE n 1 131 GLY n 1 132 ILE n 1 133 GLY n 1 134 GLY n 1 135 LYS n 1 136 SER n 1 137 PHE n 1 138 VAL n 1 139 THR n 1 140 LEU n 1 141 THR n 1 142 GLY n 1 143 ASP n 1 144 VAL n 1 145 ALA n 1 146 SER n 1 147 VAL n 1 148 GLU n 1 149 SER n 1 150 SER n 1 151 VAL n 1 152 ALA n 1 153 ALA n 1 154 GLY n 1 155 VAL n 1 156 MSE n 1 157 LEU n 1 158 ALA n 1 159 SER n 1 160 GLU n 1 161 ARG n 1 162 GLY n 1 163 MSE n 1 164 LEU n 1 165 VAL n 1 166 ASP n 1 167 LYS n 1 168 VAL n 1 169 VAL n 1 170 ILE n 1 171 PRO n 1 172 SER n 1 173 PRO n 1 174 HIS n 1 175 ASP n 1 176 HIS n 1 177 LEU n 1 178 LYS n 1 179 ARG n 1 180 CYS n 1 181 LEU n 1 182 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Dhaf_0360 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain DCB _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Desulfitobacterium hafniense' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272564 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain pPK1037 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B8G1Q4_DESHD _struct_ref.pdbx_db_accession B8G1Q4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MESIGLVEVNSIARGIEAADAMLKAAQVDLLEAKPVCPGKYIVLICGDVAAVQSSVTAGKTMAAHSVLDDFILPNVHPQV LTAISAATPLTLIKALGIIETFSIASLIVAADTAAKTGQVDLVEIRIGMGIGGKSFVTLTGDVASVESSVAAGVMLASER GMLVDKVVIPSPHDHLKRCLC ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3NWG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 182 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B8G1Q4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 181 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 181 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3NWG _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code B8G1Q4 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'EXPRESSION TAG' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3NWG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.40 _exptl_crystal.density_percent_sol 63.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '30% (w/v) PEG400, 0.2M magnesium chloride, 0.1M HEPES at pH7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-02-05 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97937 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97937 # _reflns.entry_id 3NWG _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.7 _reflns.number_obs 7665 _reflns.number_all 7665 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 53.1 _reflns.B_iso_Wilson_estimate 54.770 _reflns.pdbx_redundancy 20.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.72 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.713 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.63 _reflns_shell.pdbx_redundancy 19.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 193 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3NWG _refine.ls_number_reflns_obs 7239 _refine.ls_number_reflns_all 7239 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 99.40 _refine.ls_R_factor_obs 0.22586 _refine.ls_R_factor_all 0.22586 _refine.ls_R_factor_R_work 0.22270 _refine.ls_R_factor_R_free 0.28301 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 369 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.930 _refine.correlation_coeff_Fo_to_Fc_free 0.899 _refine.B_iso_mean 61.863 _refine.aniso_B[1][1] -3.48 _refine.aniso_B[2][2] -3.48 _refine.aniso_B[3][3] 5.22 _refine.aniso_B[1][2] -1.74 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.335 _refine.overall_SU_ML 0.259 _refine.overall_SU_B 25.201 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.518 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1287 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 36 _refine_hist.number_atoms_total 1341 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 1316 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.457 1.995 ? 1784 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.210 5.000 ? 179 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 42.121 25.556 ? 36 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.117 15.000 ? 225 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22.906 15.000 ? 4 'X-RAY DIFFRACTION' ? r_chiral_restr 0.086 0.200 ? 231 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.021 ? 913 'X-RAY DIFFRACTION' ? r_mcbond_it 0.846 1.500 ? 892 'X-RAY DIFFRACTION' ? r_mcangle_it 1.571 2.000 ? 1438 'X-RAY DIFFRACTION' ? r_scbond_it 1.622 3.000 ? 424 'X-RAY DIFFRACTION' ? r_scangle_it 2.932 4.500 ? 346 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.702 _refine_ls_shell.d_res_low 2.772 _refine_ls_shell.number_reflns_R_work 497 _refine_ls_shell.R_factor_R_work 0.253 _refine_ls_shell.percent_reflns_obs 96.55 _refine_ls_shell.R_factor_R_free 0.281 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3NWG _struct.title 'The crystal structure of a microcomparments protein from Desulfitobacterium hafniense DCB' _struct.pdbx_descriptor 'Microcompartments protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NWG _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text ;Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, BMC domain, STRUCTURAL PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ;Size exclusion chromatography confirms the presence of trimers. Two copies of trimer can potentially stack together and form a hexamer, as found in crystal lattice. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 12 ? ALA A 27 ? SER A 11 ALA A 26 1 ? 16 HELX_P HELX_P2 2 ASP A 49 ? ALA A 65 ? ASP A 48 ALA A 64 1 ? 17 HELX_P HELX_P3 3 HIS A 78 ? SER A 86 ? HIS A 77 SER A 85 1 ? 9 HELX_P HELX_P4 4 SER A 104 ? THR A 118 ? SER A 103 THR A 117 1 ? 15 HELX_P HELX_P5 5 ASP A 143 ? ARG A 161 ? ASP A 142 ARG A 160 1 ? 19 HELX_P HELX_P6 6 HIS A 174 ? ARG A 179 ? HIS A 173 ARG A 178 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 1 C ? ? ? 1_555 A MSE 2 N ? ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.333 ? covale2 covale ? ? A MSE 2 C ? ? ? 1_555 A GLU 3 N ? ? A MSE 1 A GLU 2 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A ALA 22 C ? ? ? 1_555 A MSE 23 N ? ? A ALA 21 A MSE 22 1_555 ? ? ? ? ? ? ? 1.336 ? covale4 covale ? ? A MSE 23 C ? ? ? 1_555 A LEU 24 N ? ? A MSE 22 A LEU 23 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale ? ? A THR 62 C ? ? ? 1_555 A MSE 63 N ? ? A THR 61 A MSE 62 1_555 ? ? ? ? ? ? ? 1.325 ? covale6 covale ? ? A MSE 63 C ? ? ? 1_555 A ALA 64 N ? ? A MSE 62 A ALA 63 1_555 ? ? ? ? ? ? ? 1.328 ? covale7 covale ? ? A GLY 129 C ? ? ? 1_555 A MSE 130 N ? ? A GLY 128 A MSE 129 1_555 ? ? ? ? ? ? ? 1.339 ? covale8 covale ? ? A MSE 130 C ? ? ? 1_555 A GLY 131 N ? ? A MSE 129 A GLY 130 1_555 ? ? ? ? ? ? ? 1.334 ? covale9 covale ? ? A VAL 155 C ? ? ? 1_555 A MSE 156 N ? ? A VAL 154 A MSE 155 1_555 ? ? ? ? ? ? ? 1.331 ? covale10 covale ? ? A MSE 156 C ? ? ? 1_555 A LEU 157 N ? ? A MSE 155 A LEU 156 1_555 ? ? ? ? ? ? ? 1.337 ? covale11 covale ? ? A GLY 162 C ? ? ? 1_555 A MSE 163 N ? ? A GLY 161 A MSE 162 1_555 ? ? ? ? ? ? ? 1.334 ? covale12 covale ? ? A MSE 163 C ? ? ? 1_555 A LEU 164 N ? ? A MSE 162 A LEU 163 1_555 ? ? ? ? ? ? ? 1.336 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PRO 39 A . ? PRO 38 A GLY 40 A ? GLY 39 A 1 -14.09 2 GLY 129 A . ? GLY 128 A MSE 130 A ? MSE 129 A 1 -12.11 3 GLY 131 A . ? GLY 130 A ILE 132 A ? ILE 131 A 1 -0.81 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 30 ? PRO A 36 ? ASP A 29 PRO A 35 A 2 TYR A 42 ? GLY A 48 ? TYR A 41 GLY A 47 A 3 SER A 4 ? VAL A 10 ? SER A 3 VAL A 9 A 4 VAL A 68 ? LEU A 74 ? VAL A 67 LEU A 73 B 1 ASP A 122 ? ARG A 127 ? ASP A 121 ARG A 126 B 2 SER A 136 ? GLY A 142 ? SER A 135 GLY A 141 B 3 ALA A 96 ? THR A 102 ? ALA A 95 THR A 101 B 4 LEU A 164 ? ILE A 170 ? LEU A 163 ILE A 169 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 33 ? N GLU A 32 O LEU A 45 ? O LEU A 44 A 2 3 O GLY A 48 ? O GLY A 47 N SER A 4 ? N SER A 3 A 3 4 N GLU A 9 ? N GLU A 8 O ASP A 70 ? O ASP A 69 B 1 2 N VAL A 124 ? N VAL A 123 O THR A 139 ? O THR A 138 B 2 3 O LEU A 140 ? O LEU A 139 N GLY A 98 ? N GLY A 97 B 3 4 N LEU A 97 ? N LEU A 96 O ILE A 170 ? O ILE A 169 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE GOL A 182' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL A 183' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL A 184' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 LYS A 61 ? LYS A 60 . ? 7_556 ? 2 AC2 4 LEU A 24 ? LEU A 23 . ? 1_555 ? 3 AC2 4 LYS A 25 ? LYS A 24 . ? 1_555 ? 4 AC2 4 ALA A 27 ? ALA A 26 . ? 1_555 ? 5 AC2 4 GLN A 28 ? GLN A 27 . ? 1_555 ? 6 AC3 3 TYR A 42 ? TYR A 41 . ? 3_565 ? 7 AC3 3 ARG A 127 ? ARG A 126 . ? 1_555 ? 8 AC3 3 PHE A 137 ? PHE A 136 . ? 1_555 ? # _database_PDB_matrix.entry_id 3NWG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3NWG _atom_sites.fract_transf_matrix[1][1] 0.009536 _atom_sites.fract_transf_matrix[1][2] 0.005506 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011012 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012299 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 0 0 ALA ALA A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 GLU 3 2 2 GLU GLU A . n A 1 4 SER 4 3 3 SER SER A . n A 1 5 ILE 5 4 4 ILE ILE A . n A 1 6 GLY 6 5 5 GLY GLY A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 VAL 8 7 7 VAL VAL A . n A 1 9 GLU 9 8 8 GLU GLU A . n A 1 10 VAL 10 9 9 VAL VAL A . n A 1 11 ASN 11 10 10 ASN ASN A . n A 1 12 SER 12 11 11 SER SER A . n A 1 13 ILE 13 12 12 ILE ILE A . n A 1 14 ALA 14 13 13 ALA ALA A . n A 1 15 ARG 15 14 14 ARG ARG A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 ILE 17 16 16 ILE ILE A . n A 1 18 GLU 18 17 17 GLU GLU A . n A 1 19 ALA 19 18 18 ALA ALA A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 ASP 21 20 20 ASP ASP A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 MSE 23 22 22 MSE MSE A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 LYS 25 24 24 LYS LYS A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 GLN 28 27 27 GLN GLN A . n A 1 29 VAL 29 28 28 VAL VAL A . n A 1 30 ASP 30 29 29 ASP ASP A . n A 1 31 LEU 31 30 30 LEU LEU A . n A 1 32 LEU 32 31 31 LEU LEU A . n A 1 33 GLU 33 32 32 GLU GLU A . n A 1 34 ALA 34 33 33 ALA ALA A . n A 1 35 LYS 35 34 34 LYS LYS A . n A 1 36 PRO 36 35 35 PRO PRO A . n A 1 37 VAL 37 36 36 VAL VAL A . n A 1 38 CYS 38 37 37 CYS CYS A . n A 1 39 PRO 39 38 38 PRO PRO A . n A 1 40 GLY 40 39 39 GLY GLY A . n A 1 41 LYS 41 40 40 LYS LYS A . n A 1 42 TYR 42 41 41 TYR TYR A . n A 1 43 ILE 43 42 42 ILE ILE A . n A 1 44 VAL 44 43 43 VAL VAL A . n A 1 45 LEU 45 44 44 LEU LEU A . n A 1 46 ILE 46 45 45 ILE ILE A . n A 1 47 CYS 47 46 46 CYS CYS A . n A 1 48 GLY 48 47 47 GLY GLY A . n A 1 49 ASP 49 48 48 ASP ASP A . n A 1 50 VAL 50 49 49 VAL VAL A . n A 1 51 ALA 51 50 50 ALA ALA A . n A 1 52 ALA 52 51 51 ALA ALA A . n A 1 53 VAL 53 52 52 VAL VAL A . n A 1 54 GLN 54 53 53 GLN GLN A . n A 1 55 SER 55 54 54 SER SER A . n A 1 56 SER 56 55 55 SER SER A . n A 1 57 VAL 57 56 56 VAL VAL A . n A 1 58 THR 58 57 57 THR THR A . n A 1 59 ALA 59 58 58 ALA ALA A . n A 1 60 GLY 60 59 59 GLY GLY A . n A 1 61 LYS 61 60 60 LYS LYS A . n A 1 62 THR 62 61 61 THR THR A . n A 1 63 MSE 63 62 62 MSE MSE A . n A 1 64 ALA 64 63 63 ALA ALA A . n A 1 65 ALA 65 64 64 ALA ALA A . n A 1 66 HIS 66 65 65 HIS HIS A . n A 1 67 SER 67 66 66 SER SER A . n A 1 68 VAL 68 67 67 VAL VAL A . n A 1 69 LEU 69 68 68 LEU LEU A . n A 1 70 ASP 70 69 69 ASP ASP A . n A 1 71 ASP 71 70 70 ASP ASP A . n A 1 72 PHE 72 71 71 PHE PHE A . n A 1 73 ILE 73 72 72 ILE ILE A . n A 1 74 LEU 74 73 73 LEU LEU A . n A 1 75 PRO 75 74 74 PRO PRO A . n A 1 76 ASN 76 75 75 ASN ASN A . n A 1 77 VAL 77 76 76 VAL VAL A . n A 1 78 HIS 78 77 77 HIS HIS A . n A 1 79 PRO 79 78 78 PRO PRO A . n A 1 80 GLN 80 79 79 GLN GLN A . n A 1 81 VAL 81 80 80 VAL VAL A . n A 1 82 LEU 82 81 81 LEU LEU A . n A 1 83 THR 83 82 82 THR THR A . n A 1 84 ALA 84 83 83 ALA ALA A . n A 1 85 ILE 85 84 84 ILE ILE A . n A 1 86 SER 86 85 85 SER SER A . n A 1 87 ALA 87 86 86 ALA ALA A . n A 1 88 ALA 88 87 87 ALA ALA A . n A 1 89 THR 89 88 88 THR THR A . n A 1 90 PRO 90 89 89 PRO PRO A . n A 1 91 LEU 91 90 90 LEU LEU A . n A 1 92 THR 92 91 91 THR THR A . n A 1 93 LEU 93 92 92 LEU LEU A . n A 1 94 ILE 94 93 93 ILE ILE A . n A 1 95 LYS 95 94 94 LYS LYS A . n A 1 96 ALA 96 95 95 ALA ALA A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 GLY 98 97 97 GLY GLY A . n A 1 99 ILE 99 98 98 ILE ILE A . n A 1 100 ILE 100 99 99 ILE ILE A . n A 1 101 GLU 101 100 100 GLU GLU A . n A 1 102 THR 102 101 101 THR THR A . n A 1 103 PHE 103 102 102 PHE PHE A . n A 1 104 SER 104 103 103 SER SER A . n A 1 105 ILE 105 104 104 ILE ILE A . n A 1 106 ALA 106 105 105 ALA ALA A . n A 1 107 SER 107 106 106 SER SER A . n A 1 108 LEU 108 107 107 LEU LEU A . n A 1 109 ILE 109 108 108 ILE ILE A . n A 1 110 VAL 110 109 109 VAL VAL A . n A 1 111 ALA 111 110 110 ALA ALA A . n A 1 112 ALA 112 111 111 ALA ALA A . n A 1 113 ASP 113 112 112 ASP ASP A . n A 1 114 THR 114 113 113 THR THR A . n A 1 115 ALA 115 114 114 ALA ALA A . n A 1 116 ALA 116 115 115 ALA ALA A . n A 1 117 LYS 117 116 116 LYS LYS A . n A 1 118 THR 118 117 117 THR THR A . n A 1 119 GLY 119 118 118 GLY GLY A . n A 1 120 GLN 120 119 119 GLN GLN A . n A 1 121 VAL 121 120 120 VAL VAL A . n A 1 122 ASP 122 121 121 ASP ASP A . n A 1 123 LEU 123 122 122 LEU LEU A . n A 1 124 VAL 124 123 123 VAL VAL A . n A 1 125 GLU 125 124 124 GLU GLU A . n A 1 126 ILE 126 125 125 ILE ILE A . n A 1 127 ARG 127 126 126 ARG ARG A . n A 1 128 ILE 128 127 127 ILE ILE A . n A 1 129 GLY 129 128 128 GLY GLY A . n A 1 130 MSE 130 129 129 MSE MSE A . n A 1 131 GLY 131 130 130 GLY GLY A . n A 1 132 ILE 132 131 131 ILE ILE A . n A 1 133 GLY 133 132 132 GLY GLY A . n A 1 134 GLY 134 133 133 GLY GLY A . n A 1 135 LYS 135 134 134 LYS LYS A . n A 1 136 SER 136 135 135 SER SER A . n A 1 137 PHE 137 136 136 PHE PHE A . n A 1 138 VAL 138 137 137 VAL VAL A . n A 1 139 THR 139 138 138 THR THR A . n A 1 140 LEU 140 139 139 LEU LEU A . n A 1 141 THR 141 140 140 THR THR A . n A 1 142 GLY 142 141 141 GLY GLY A . n A 1 143 ASP 143 142 142 ASP ASP A . n A 1 144 VAL 144 143 143 VAL VAL A . n A 1 145 ALA 145 144 144 ALA ALA A . n A 1 146 SER 146 145 145 SER SER A . n A 1 147 VAL 147 146 146 VAL VAL A . n A 1 148 GLU 148 147 147 GLU GLU A . n A 1 149 SER 149 148 148 SER SER A . n A 1 150 SER 150 149 149 SER SER A . n A 1 151 VAL 151 150 150 VAL VAL A . n A 1 152 ALA 152 151 151 ALA ALA A . n A 1 153 ALA 153 152 152 ALA ALA A . n A 1 154 GLY 154 153 153 GLY GLY A . n A 1 155 VAL 155 154 154 VAL VAL A . n A 1 156 MSE 156 155 155 MSE MSE A . n A 1 157 LEU 157 156 156 LEU LEU A . n A 1 158 ALA 158 157 157 ALA ALA A . n A 1 159 SER 159 158 158 SER SER A . n A 1 160 GLU 160 159 159 GLU GLU A . n A 1 161 ARG 161 160 160 ARG ARG A . n A 1 162 GLY 162 161 161 GLY GLY A . n A 1 163 MSE 163 162 162 MSE MSE A . n A 1 164 LEU 164 163 163 LEU LEU A . n A 1 165 VAL 165 164 164 VAL VAL A . n A 1 166 ASP 166 165 165 ASP ASP A . n A 1 167 LYS 167 166 166 LYS LYS A . n A 1 168 VAL 168 167 167 VAL VAL A . n A 1 169 VAL 169 168 168 VAL VAL A . n A 1 170 ILE 170 169 169 ILE ILE A . n A 1 171 PRO 171 170 170 PRO PRO A . n A 1 172 SER 172 171 171 SER SER A . n A 1 173 PRO 173 172 172 PRO PRO A . n A 1 174 HIS 174 173 173 HIS HIS A . n A 1 175 ASP 175 174 174 ASP ASP A . n A 1 176 HIS 176 175 175 HIS HIS A . n A 1 177 LEU 177 176 176 LEU LEU A . n A 1 178 LYS 178 177 177 LYS LYS A . n A 1 179 ARG 179 178 178 ARG ARG A . n A 1 180 CYS 180 179 179 CYS CYS A . n A 1 181 LEU 181 180 ? ? ? A . n A 1 182 CYS 182 181 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 182 1 GOL GOL A . C 2 GOL 1 183 1 GOL GOL A . D 2 GOL 1 184 1 GOL GOL A . E 3 HOH 1 185 1 HOH HOH A . E 3 HOH 2 186 2 HOH HOH A . E 3 HOH 3 187 6 HOH HOH A . E 3 HOH 4 188 7 HOH HOH A . E 3 HOH 5 189 8 HOH HOH A . E 3 HOH 6 190 9 HOH HOH A . E 3 HOH 7 191 10 HOH HOH A . E 3 HOH 8 192 12 HOH HOH A . E 3 HOH 9 193 13 HOH HOH A . E 3 HOH 10 194 16 HOH HOH A . E 3 HOH 11 195 18 HOH HOH A . E 3 HOH 12 196 21 HOH HOH A . E 3 HOH 13 197 24 HOH HOH A . E 3 HOH 14 198 27 HOH HOH A . E 3 HOH 15 199 36 HOH HOH A . E 3 HOH 16 200 37 HOH HOH A . E 3 HOH 17 201 42 HOH HOH A . E 3 HOH 18 202 49 HOH HOH A . E 3 HOH 19 203 50 HOH HOH A . E 3 HOH 20 204 52 HOH HOH A . E 3 HOH 21 205 53 HOH HOH A . E 3 HOH 22 206 54 HOH HOH A . E 3 HOH 23 207 55 HOH HOH A . E 3 HOH 24 208 57 HOH HOH A . E 3 HOH 25 209 58 HOH HOH A . E 3 HOH 26 210 59 HOH HOH A . E 3 HOH 27 211 66 HOH HOH A . E 3 HOH 28 212 67 HOH HOH A . E 3 HOH 29 213 68 HOH HOH A . E 3 HOH 30 214 69 HOH HOH A . E 3 HOH 31 215 71 HOH HOH A . E 3 HOH 32 216 72 HOH HOH A . E 3 HOH 33 217 73 HOH HOH A . E 3 HOH 34 218 74 HOH HOH A . E 3 HOH 35 219 75 HOH HOH A . E 3 HOH 36 220 79 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 23 A MSE 22 ? MET SELENOMETHIONINE 3 A MSE 63 A MSE 62 ? MET SELENOMETHIONINE 4 A MSE 130 A MSE 129 ? MET SELENOMETHIONINE 5 A MSE 156 A MSE 155 ? MET SELENOMETHIONINE 6 A MSE 163 A MSE 162 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA hexameric 6 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3,4,5,6 A,B,C,D,E 2 1,2,3 A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 16220 ? 1 MORE -85 ? 1 'SSA (A^2)' 39840 ? 2 'ABSA (A^2)' 6110 ? 2 MORE -33 ? 2 'SSA (A^2)' 21920 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 52.4310000000 0.8660254038 -0.5000000000 0.0000000000 90.8131558916 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -52.4310000000 -0.8660254038 -0.5000000000 0.0000000000 90.8131558916 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5000000000 -0.8660254038 0.0000000000 52.4310000000 -0.8660254038 -0.5000000000 0.0000000000 90.8131558916 0.0000000000 0.0000000000 -1.0000000000 40.6545000000 5 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 40.6545000000 6 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/2 0.5000000000 0.8660254038 0.0000000000 -52.4310000000 0.8660254038 -0.5000000000 0.0000000000 90.8131558916 0.0000000000 0.0000000000 -1.0000000000 40.6545000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 0.6729 _pdbx_refine_tls.origin_y 40.8598 _pdbx_refine_tls.origin_z 37.2350 _pdbx_refine_tls.T[1][1] 0.0141 _pdbx_refine_tls.T[2][2] 0.0279 _pdbx_refine_tls.T[3][3] 0.0847 _pdbx_refine_tls.T[1][2] 0.0160 _pdbx_refine_tls.T[1][3] -0.0107 _pdbx_refine_tls.T[2][3] 0.0049 _pdbx_refine_tls.L[1][1] 5.8447 _pdbx_refine_tls.L[2][2] 0.7022 _pdbx_refine_tls.L[3][3] 0.0650 _pdbx_refine_tls.L[1][2] -0.0761 _pdbx_refine_tls.L[1][3] 0.2290 _pdbx_refine_tls.L[2][3] 0.1379 _pdbx_refine_tls.S[1][1] 0.0283 _pdbx_refine_tls.S[1][2] -0.0682 _pdbx_refine_tls.S[1][3] -0.0186 _pdbx_refine_tls.S[2][1] -0.0084 _pdbx_refine_tls.S[2][2] -0.0079 _pdbx_refine_tls.S[2][3] 0.0321 _pdbx_refine_tls.S[3][1] 0.0078 _pdbx_refine_tls.S[3][2] -0.0079 _pdbx_refine_tls.S[3][3] -0.0204 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 3 ? ? A 79 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 95 ? ? A 171 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' collect ? 1 SHELXD phasing . ? 2 MLPHARE phasing . ? 3 RESOLVE 'model building' . ? 4 HKL-3000 phasing . ? 5 REFMAC refinement 5.5.0109 ? 6 HKL-3000 'data reduction' . ? 7 HKL-3000 'data scaling' . ? 8 RESOLVE phasing . ? 9 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 210 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 210 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 9_556 _pdbx_validate_symm_contact.dist 2.11 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 36 ? ? -112.20 -155.47 2 1 CYS A 37 ? ? -42.97 159.85 3 1 VAL A 49 ? ? -26.99 -64.30 4 1 ALA A 64 ? ? 48.69 -113.52 5 1 SER A 85 ? ? -73.49 29.46 6 1 ALA A 86 ? ? 37.62 57.54 7 1 LYS A 94 ? ? -103.74 -105.15 8 1 ILE A 131 ? ? -142.60 -109.02 9 1 ASP A 165 ? ? 178.69 173.71 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 180 ? A LEU 181 2 1 Y 1 A CYS 181 ? A CYS 182 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 2 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #