HEADER ISOMERASE 23-JUL-10 3O2Y TITLE STRUCTURE-FUNCTION ANALYSIS OF HUMAN L-PROSTAGLANDIN D SYNTHASE BOUND TITLE 2 WITH FATTY ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROSTAGLANDIN-H2 D-ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 29-190; COMPND 5 SYNONYM: LIPOCALIN-TYPE PROSTAGLANDIN-D SYNTHASE, GLUTATHIONE- COMPND 6 INDEPENDENT PGD SYNTHASE, PROSTAGLANDIN-D2 SYNTHASE, PGD2 SYNTHASE, COMPND 7 PGDS2, PGDS, BETA-TRACE PROTEIN, CEREBRIN-28; COMPND 8 EC: 5.3.99.2; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIPOCALIN, PROSTAGLANDIN SYNTHASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHOU,N.SHAW,Y.LI,Y.ZHAO,R.ZHANG,Z.-J.LIU REVDAT 1 22-SEP-10 3O2Y 0 JRNL AUTH Y.ZHOU,N.SHAW,Y.LI,Y.ZHAO,R.ZHANG,Z.-J.LIU JRNL TITL STRUCTURE-FUNCTION ANALYSIS OF HUMAN L-PROSTAGLANDIN D JRNL TITL 2 SYNTHASE BOUND WITH FATTY ACID JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 28122 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1502 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1377 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2503 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.68000 REMARK 3 B22 (A**2) : -1.68000 REMARK 3 B33 (A**2) : 3.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.849 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2646 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3552 ; 2.043 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 320 ; 6.840 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;34.148 ;23.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 434 ;17.779 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.355 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 374 ; 0.144 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1966 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1596 ; 1.383 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2561 ; 2.400 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1050 ; 3.710 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 991 ; 5.580 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): 0.6720 -19.0740 4.8040 REMARK 3 T TENSOR REMARK 3 T11: 0.1140 T22: 0.1199 REMARK 3 T33: 0.0847 T12: 0.0090 REMARK 3 T13: 0.0059 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.4976 L22: 0.6248 REMARK 3 L33: 0.9665 L12: -0.2569 REMARK 3 L13: 0.6011 L23: -0.0488 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: -0.0833 S13: -0.0904 REMARK 3 S21: 0.0137 S22: 0.0635 S23: 0.0794 REMARK 3 S31: -0.0046 S32: -0.0504 S33: -0.0259 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 29 B 91 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4260 -43.4330 8.0710 REMARK 3 T TENSOR REMARK 3 T11: 0.0838 T22: 0.0734 REMARK 3 T33: 0.0976 T12: 0.0122 REMARK 3 T13: 0.0098 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 3.3380 L22: 3.0333 REMARK 3 L33: 0.3481 L12: -1.9870 REMARK 3 L13: 0.6470 L23: -0.7716 REMARK 3 S TENSOR REMARK 3 S11: -0.1986 S12: -0.1066 S13: -0.2254 REMARK 3 S21: 0.1769 S22: 0.2223 S23: 0.0848 REMARK 3 S31: -0.0439 S32: -0.0406 S33: -0.0238 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 154 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5150 -25.8510 1.2300 REMARK 3 T TENSOR REMARK 3 T11: 0.1161 T22: 0.1063 REMARK 3 T33: 0.0888 T12: -0.0020 REMARK 3 T13: -0.0188 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.1348 L22: 0.9172 REMARK 3 L33: 0.5528 L12: -0.0922 REMARK 3 L13: 0.0362 L23: -0.1323 REMARK 3 S TENSOR REMARK 3 S11: -0.0041 S12: -0.0520 S13: -0.0890 REMARK 3 S21: -0.1420 S22: 0.0253 S23: 0.0709 REMARK 3 S31: 0.0653 S32: -0.0001 S33: -0.0212 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 92 B 154 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6870 -51.3450 5.6130 REMARK 3 T TENSOR REMARK 3 T11: 0.0544 T22: 0.0497 REMARK 3 T33: 0.2299 T12: 0.0015 REMARK 3 T13: -0.0054 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 2.2668 L22: 3.8505 REMARK 3 L33: 0.5609 L12: -1.0037 REMARK 3 L13: 0.1613 L23: -0.1632 REMARK 3 S TENSOR REMARK 3 S11: 0.0500 S12: 0.0354 S13: -0.5060 REMARK 3 S21: -0.0626 S22: 0.0719 S23: 0.4492 REMARK 3 S31: 0.0928 S32: 0.0875 S33: -0.1219 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 155 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5840 -13.9650 -6.6740 REMARK 3 T TENSOR REMARK 3 T11: 0.1716 T22: 0.1231 REMARK 3 T33: 0.0321 T12: -0.0239 REMARK 3 T13: 0.0090 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.6330 L22: 1.1724 REMARK 3 L33: 1.7731 L12: -0.7296 REMARK 3 L13: -0.0521 L23: 0.2320 REMARK 3 S TENSOR REMARK 3 S11: 0.0580 S12: 0.0609 S13: 0.0253 REMARK 3 S21: -0.2837 S22: -0.0420 S23: -0.0383 REMARK 3 S31: -0.3252 S32: -0.0371 S33: -0.0160 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 155 B 188 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2290 -41.9610 -1.4860 REMARK 3 T TENSOR REMARK 3 T11: 0.1565 T22: 0.0892 REMARK 3 T33: 0.1736 T12: -0.0146 REMARK 3 T13: -0.0843 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 3.6515 L22: 4.5486 REMARK 3 L33: 1.9791 L12: -2.0903 REMARK 3 L13: 0.5616 L23: 0.4377 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: 0.3092 S13: -0.4049 REMARK 3 S21: -0.5275 S22: -0.0656 S23: 0.8592 REMARK 3 S31: -0.1486 S32: 0.0049 S33: 0.0971 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3O2Y COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-AUG-10. REMARK 100 THE RCSB ID CODE IS RCSB060598. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 3.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28122 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRIC ACID, PH 3.8, 1.7M REMARK 280 AMMONIUM SULFATE , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.81750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 8.90875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.72625 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 189 REMARK 465 GLN A 190 REMARK 465 GLU B 189 REMARK 465 GLN B 190 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 40 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 252 O HOH A 277 1.46 REMARK 500 O HOH A 252 O HOH A 253 1.66 REMARK 500 O HOH B 12 O HOH B 214 1.91 REMARK 500 OD2 ASP A 142 O HOH A 271 2.09 REMARK 500 OE2 GLU A 158 O HOH A 255 2.12 REMARK 500 NE ARG A 156 O HOH A 255 2.12 REMARK 500 O HOH A 9 O HOH A 254 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 168 O HOH A 221 3554 1.19 REMARK 500 O HOH A 269 O HOH B 232 2544 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 90 CB GLU A 90 CG 0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 144 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 144 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 LEU B 48 CA - CB - CG ANGL. DEV. = 21.0 DEGREES REMARK 500 LEU B 48 CB - CG - CD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 65 -152.87 -101.13 REMARK 500 ASN A 87 18.55 50.51 REMARK 500 TYR A 125 -41.33 66.30 REMARK 500 GLN A 127 -42.24 -133.99 REMARK 500 CYS A 186 -2.72 85.96 REMARK 500 ALA B 65 -145.19 -99.56 REMARK 500 ALA B 99 37.35 -140.88 REMARK 500 TYR B 125 -43.92 78.18 REMARK 500 GLN B 127 -50.96 -130.07 REMARK 500 CYS B 186 17.31 80.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLA B 202 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 252 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3O19 RELATED DB: PDB REMARK 900 RELATED ID: 3O22 RELATED DB: PDB DBREF 3O2Y A 29 190 UNP P41222 PTGDS_HUMAN 29 190 DBREF 3O2Y B 29 190 UNP P41222 PTGDS_HUMAN 29 190 SEQADV 3O2Y ALA A 65 UNP P41222 CYS 65 ENGINEERED MUTATION SEQADV 3O2Y ALA B 65 UNP P41222 CYS 65 ENGINEERED MUTATION SEQRES 1 A 162 SER VAL GLN PRO ASN PHE GLN GLN ASP LYS PHE LEU GLY SEQRES 2 A 162 ARG TRP PHE SER ALA GLY LEU ALA SER ASN SER SER TRP SEQRES 3 A 162 LEU ARG GLU LYS LYS ALA ALA LEU SER MET ALA LYS SER SEQRES 4 A 162 VAL VAL ALA PRO ALA THR ASP GLY GLY LEU ASN LEU THR SEQRES 5 A 162 SER THR PHE LEU ARG LYS ASN GLN CYS GLU THR ARG THR SEQRES 6 A 162 MET LEU LEU GLN PRO ALA GLY SER LEU GLY SER TYR SER SEQRES 7 A 162 TYR ARG SER PRO HIS TRP GLY SER THR TYR SER VAL SER SEQRES 8 A 162 VAL VAL GLU THR ASP TYR ASP GLN TYR ALA LEU LEU TYR SEQRES 9 A 162 SER GLN GLY SER LYS GLY PRO GLY GLU ASP PHE ARG MET SEQRES 10 A 162 ALA THR LEU TYR SER ARG THR GLN THR PRO ARG ALA GLU SEQRES 11 A 162 LEU LYS GLU LYS PHE THR ALA PHE CYS LYS ALA GLN GLY SEQRES 12 A 162 PHE THR GLU ASP THR ILE VAL PHE LEU PRO GLN THR ASP SEQRES 13 A 162 LYS CYS MET THR GLU GLN SEQRES 1 B 162 SER VAL GLN PRO ASN PHE GLN GLN ASP LYS PHE LEU GLY SEQRES 2 B 162 ARG TRP PHE SER ALA GLY LEU ALA SER ASN SER SER TRP SEQRES 3 B 162 LEU ARG GLU LYS LYS ALA ALA LEU SER MET ALA LYS SER SEQRES 4 B 162 VAL VAL ALA PRO ALA THR ASP GLY GLY LEU ASN LEU THR SEQRES 5 B 162 SER THR PHE LEU ARG LYS ASN GLN CYS GLU THR ARG THR SEQRES 6 B 162 MET LEU LEU GLN PRO ALA GLY SER LEU GLY SER TYR SER SEQRES 7 B 162 TYR ARG SER PRO HIS TRP GLY SER THR TYR SER VAL SER SEQRES 8 B 162 VAL VAL GLU THR ASP TYR ASP GLN TYR ALA LEU LEU TYR SEQRES 9 B 162 SER GLN GLY SER LYS GLY PRO GLY GLU ASP PHE ARG MET SEQRES 10 B 162 ALA THR LEU TYR SER ARG THR GLN THR PRO ARG ALA GLU SEQRES 11 B 162 LEU LYS GLU LYS PHE THR ALA PHE CYS LYS ALA GLN GLY SEQRES 12 B 162 PHE THR GLU ASP THR ILE VAL PHE LEU PRO GLN THR ASP SEQRES 13 B 162 LYS CYS MET THR GLU GLN HET OLA A 200 20 HET PLM A 201 18 HET OLA B 202 19 HET PLM B 203 18 HET GOL B 252 6 HETNAM OLA OLEIC ACID HETNAM PLM PALMITIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 OLA 2(C18 H34 O2) FORMUL 4 PLM 2(C16 H32 O2) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *155(H2 O) HELIX 1 1 GLN A 35 LEU A 40 1 6 HELIX 2 2 SER A 52 ALA A 61 1 10 HELIX 3 3 GLY A 138 ASP A 142 5 5 HELIX 4 4 ARG A 156 GLN A 170 1 15 HELIX 5 5 THR A 173 ASP A 175 5 3 HELIX 6 6 GLN B 35 LEU B 40 1 6 HELIX 7 7 SER B 52 ALA B 61 1 10 HELIX 8 8 GLY B 138 ASP B 142 5 5 HELIX 9 9 ARG B 156 GLN B 170 1 15 HELIX 10 10 THR B 173 ASP B 175 5 3 SHEET 1 A10 ILE A 177 PHE A 179 0 SHEET 2 A10 GLY A 41 SER A 50 -1 N LEU A 48 O VAL A 178 SHEET 3 A10 ARG A 144 SER A 150 -1 O ALA A 146 N ALA A 49 SHEET 4 A10 TYR A 128 LYS A 137 -1 N SER A 133 O MET A 145 SHEET 5 A10 SER A 114 THR A 123 -1 N THR A 115 O SER A 136 SHEET 6 A10 SER A 104 SER A 109 -1 N SER A 109 O SER A 114 SHEET 7 A10 GLN A 88 PRO A 98 -1 N GLN A 97 O SER A 106 SHEET 8 A10 LEU A 77 ARG A 85 -1 N ARG A 85 O GLN A 88 SHEET 9 A10 SER A 63 PRO A 71 -1 N ALA A 70 O ASN A 78 SHEET 10 A10 GLY A 41 SER A 50 -1 N GLY A 41 O VAL A 69 SHEET 1 B10 ILE B 177 PHE B 179 0 SHEET 2 B10 GLY B 41 SER B 50 -1 N LEU B 48 O VAL B 178 SHEET 3 B10 ARG B 144 SER B 150 -1 O SER B 150 N PHE B 44 SHEET 4 B10 TYR B 128 LYS B 137 -1 N SER B 133 O MET B 145 SHEET 5 B10 SER B 114 THR B 123 -1 N THR B 115 O SER B 136 SHEET 6 B10 SER B 104 SER B 109 -1 N SER B 109 O SER B 114 SHEET 7 B10 GLN B 88 PRO B 98 -1 N GLN B 97 O SER B 106 SHEET 8 B10 LEU B 77 ARG B 85 -1 N LEU B 77 O LEU B 96 SHEET 9 B10 SER B 63 PRO B 71 -1 N ALA B 70 O ASN B 78 SHEET 10 B10 GLY B 41 SER B 50 -1 N TRP B 43 O SER B 67 SSBOND 1 CYS A 89 CYS A 186 1555 1555 2.07 SSBOND 2 CYS B 89 CYS B 186 1555 1555 2.04 CISPEP 1 MET A 187 THR A 188 0 -7.56 SITE 1 AC1 13 SER A 45 LEU A 48 LEU A 55 LYS A 59 SITE 2 AC1 13 LEU A 62 MET A 64 SER A 81 PHE A 83 SITE 3 AC1 13 MET A 94 MET A 145 THR A 147 PLM A 201 SITE 4 AC1 13 HOH A 272 SITE 1 AC2 12 SER A 52 LEU A 79 MET A 94 TYR A 116 SITE 2 AC2 12 SER A 133 PHE A 143 MET A 145 TYR A 149 SITE 3 AC2 12 OLA A 200 HOH A 237 HOH A 256 HOH A 272 SITE 1 AC3 10 LEU B 55 LYS B 59 LEU B 62 MET B 64 SITE 2 AC3 10 PHE B 83 MET B 94 MET B 145 THR B 147 SITE 3 AC3 10 TYR B 149 PLM B 203 SITE 1 AC4 12 ASP A 142 ASN B 51 SER B 52 TRP B 54 SITE 2 AC4 12 LEU B 55 MET B 94 SER B 133 PHE B 143 SITE 3 AC4 12 MET B 145 OLA B 202 HOH B 221 HOH B 228 SITE 1 AC5 2 THR B 73 ASN B 78 CRYST1 90.221 90.221 35.635 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011084 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011084 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028062 0.00000