data_3O3H # _entry.id 3O3H # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3O3H pdb_00003o3h 10.2210/pdb3o3h/pdb NDB NA0637 ? ? RCSB RCSB060617 ? ? WWPDB D_1000060617 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.value' 20 3 'Structure model' '_struct_conn.pdbx_dist_value' 21 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 35 3 'Structure model' '_struct_ref_seq_dif.details' 36 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3O3H _pdbx_database_status.recvd_initial_deposition_date 2010-07-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2etj 'apo structure of T. maritima RNase H2' unspecified PDB 3O3F 'T. maritima RNase H2 D107N in complex with nucleic acid substrate and magnesium ions' unspecified PDB 3O3G 'T. maritima RNase H2 in complex with nucleic acid substrate and calcium ions' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rychlik, M.P.' 1 'Chon, H.' 2 'Cerritelli, S.M.' 3 'Klimek, P.' 4 'Crouch, R.J.' 5 'Nowotny, M.' 6 # _citation.id primary _citation.title 'Crystal Structures of RNase H2 in Complex with Nucleic Acid Reveal the Mechanism of RNA-DNA Junction Recognition and Cleavage.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 40 _citation.page_first 658 _citation.page_last 670 _citation.year 2010 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21095591 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2010.11.001 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rychlik, M.P.' 1 ? primary 'Chon, H.' 2 ? primary 'Cerritelli, S.M.' 3 ? primary 'Klimek, P.' 4 ? primary 'Crouch, R.J.' 5 ? primary 'Nowotny, M.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ribonuclease HII' 24682.652 1 3.1.26.4 D107N ? ? 2 polymer syn ;DNA (5'-D(*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*C)-3') ; 3702.428 1 ? ? ? ? 3 polymer syn ;DNA/RNA (5'-D(*GP*AP*CP*AP*C)-R(P*C)-D(P*TP*GP*AP*TP*TP*C)-3') ; 3638.380 1 ? ? ? ? 4 non-polymer syn 'MANGANESE (II) ION' 54.938 3 ? ? ? ? 5 water nat water 18.015 49 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNase HII' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GIDELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKEIEGINDSKQLSPAKRERLLDEIMEKAAVGIGIASPEEIDLYN IFNATKLAMNRALENLSVKPSFVLVNGKGIELSVPGTCLVKGDQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHK GYATKEHLNEIRKNGVLPIHRLSFEPVLELLTDDLLREFFEKGLISENRFERILNLLGARKS ; ;GIDELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKEIEGINDSKQLSPAKRERLLDEIMEKAAVGIGIASPEEIDLYN IFNATKLAMNRALENLSVKPSFVLVNGKGIELSVPGTCLVKGDQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHK GYATKEHLNEIRKNGVLPIHRLSFEPVLELLTDDLLREFFEKGLISENRFERILNLLGARKS ; A ? 2 polydeoxyribonucleotide no no '(DG)(DA)(DA)(DT)(DC)(DA)(DG)(DG)(DT)(DG)(DT)(DC)' GAATCAGGTGTC C ? 3 'polydeoxyribonucleotide/polyribonucleotide hybrid' no no '(DG)(DA)(DC)(DA)(DC)C(DT)(DG)(DA)(DT)(DT)(DC)' GACACCTGATTC D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MANGANESE (II) ION' MN 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ILE n 1 3 ASP n 1 4 GLU n 1 5 LEU n 1 6 TYR n 1 7 LYS n 1 8 LYS n 1 9 GLU n 1 10 PHE n 1 11 GLY n 1 12 ILE n 1 13 VAL n 1 14 ALA n 1 15 GLY n 1 16 VAL n 1 17 ASP n 1 18 GLU n 1 19 ALA n 1 20 GLY n 1 21 ARG n 1 22 GLY n 1 23 CYS n 1 24 LEU n 1 25 ALA n 1 26 GLY n 1 27 PRO n 1 28 VAL n 1 29 VAL n 1 30 ALA n 1 31 ALA n 1 32 ALA n 1 33 VAL n 1 34 VAL n 1 35 LEU n 1 36 GLU n 1 37 LYS n 1 38 GLU n 1 39 ILE n 1 40 GLU n 1 41 GLY n 1 42 ILE n 1 43 ASN n 1 44 ASP n 1 45 SER n 1 46 LYS n 1 47 GLN n 1 48 LEU n 1 49 SER n 1 50 PRO n 1 51 ALA n 1 52 LYS n 1 53 ARG n 1 54 GLU n 1 55 ARG n 1 56 LEU n 1 57 LEU n 1 58 ASP n 1 59 GLU n 1 60 ILE n 1 61 MET n 1 62 GLU n 1 63 LYS n 1 64 ALA n 1 65 ALA n 1 66 VAL n 1 67 GLY n 1 68 ILE n 1 69 GLY n 1 70 ILE n 1 71 ALA n 1 72 SER n 1 73 PRO n 1 74 GLU n 1 75 GLU n 1 76 ILE n 1 77 ASP n 1 78 LEU n 1 79 TYR n 1 80 ASN n 1 81 ILE n 1 82 PHE n 1 83 ASN n 1 84 ALA n 1 85 THR n 1 86 LYS n 1 87 LEU n 1 88 ALA n 1 89 MET n 1 90 ASN n 1 91 ARG n 1 92 ALA n 1 93 LEU n 1 94 GLU n 1 95 ASN n 1 96 LEU n 1 97 SER n 1 98 VAL n 1 99 LYS n 1 100 PRO n 1 101 SER n 1 102 PHE n 1 103 VAL n 1 104 LEU n 1 105 VAL n 1 106 ASN n 1 107 GLY n 1 108 LYS n 1 109 GLY n 1 110 ILE n 1 111 GLU n 1 112 LEU n 1 113 SER n 1 114 VAL n 1 115 PRO n 1 116 GLY n 1 117 THR n 1 118 CYS n 1 119 LEU n 1 120 VAL n 1 121 LYS n 1 122 GLY n 1 123 ASP n 1 124 GLN n 1 125 LYS n 1 126 SER n 1 127 LYS n 1 128 LEU n 1 129 ILE n 1 130 GLY n 1 131 ALA n 1 132 ALA n 1 133 SER n 1 134 ILE n 1 135 VAL n 1 136 ALA n 1 137 LYS n 1 138 VAL n 1 139 PHE n 1 140 ARG n 1 141 ASP n 1 142 ARG n 1 143 LEU n 1 144 MET n 1 145 SER n 1 146 GLU n 1 147 PHE n 1 148 HIS n 1 149 ARG n 1 150 MET n 1 151 TYR n 1 152 PRO n 1 153 GLN n 1 154 PHE n 1 155 SER n 1 156 PHE n 1 157 HIS n 1 158 LYS n 1 159 HIS n 1 160 LYS n 1 161 GLY n 1 162 TYR n 1 163 ALA n 1 164 THR n 1 165 LYS n 1 166 GLU n 1 167 HIS n 1 168 LEU n 1 169 ASN n 1 170 GLU n 1 171 ILE n 1 172 ARG n 1 173 LYS n 1 174 ASN n 1 175 GLY n 1 176 VAL n 1 177 LEU n 1 178 PRO n 1 179 ILE n 1 180 HIS n 1 181 ARG n 1 182 LEU n 1 183 SER n 1 184 PHE n 1 185 GLU n 1 186 PRO n 1 187 VAL n 1 188 LEU n 1 189 GLU n 1 190 LEU n 1 191 LEU n 1 192 THR n 1 193 ASP n 1 194 ASP n 1 195 LEU n 1 196 LEU n 1 197 ARG n 1 198 GLU n 1 199 PHE n 1 200 PHE n 1 201 GLU n 1 202 LYS n 1 203 GLY n 1 204 LEU n 1 205 ILE n 1 206 SER n 1 207 GLU n 1 208 ASN n 1 209 ARG n 1 210 PHE n 1 211 GLU n 1 212 ARG n 1 213 ILE n 1 214 LEU n 1 215 ASN n 1 216 LEU n 1 217 LEU n 1 218 GLY n 1 219 ALA n 1 220 ARG n 1 221 LYS n 1 222 SER n 2 1 DG n 2 2 DA n 2 3 DA n 2 4 DT n 2 5 DC n 2 6 DA n 2 7 DG n 2 8 DG n 2 9 DT n 2 10 DG n 2 11 DT n 2 12 DC n 3 1 DG n 3 2 DA n 3 3 DC n 3 4 DA n 3 5 DC n 3 6 C n 3 7 DT n 3 8 DG n 3 9 DA n 3 10 DT n 3 11 DT n 3 12 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rnhB, TM_0915' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 2 2 GLY GLY A . n A 1 2 ILE 2 3 3 ILE ILE A . n A 1 3 ASP 3 4 4 ASP ASP A . n A 1 4 GLU 4 5 5 GLU GLU A . n A 1 5 LEU 5 6 6 LEU LEU A . n A 1 6 TYR 6 7 7 TYR TYR A . n A 1 7 LYS 7 8 8 LYS LYS A . n A 1 8 LYS 8 9 9 LYS LYS A . n A 1 9 GLU 9 10 10 GLU GLU A . n A 1 10 PHE 10 11 11 PHE PHE A . n A 1 11 GLY 11 12 12 GLY GLY A . n A 1 12 ILE 12 13 13 ILE ILE A . n A 1 13 VAL 13 14 14 VAL VAL A . n A 1 14 ALA 14 15 15 ALA ALA A . n A 1 15 GLY 15 16 16 GLY GLY A . n A 1 16 VAL 16 17 17 VAL VAL A . n A 1 17 ASP 17 18 18 ASP ASP A . n A 1 18 GLU 18 19 19 GLU GLU A . n A 1 19 ALA 19 20 20 ALA ALA A . n A 1 20 GLY 20 21 21 GLY GLY A . n A 1 21 ARG 21 22 22 ARG ARG A . n A 1 22 GLY 22 23 23 GLY GLY A . n A 1 23 CYS 23 24 24 CYS CYS A . n A 1 24 LEU 24 25 25 LEU LEU A . n A 1 25 ALA 25 26 26 ALA ALA A . n A 1 26 GLY 26 27 27 GLY GLY A . n A 1 27 PRO 27 28 28 PRO PRO A . n A 1 28 VAL 28 29 29 VAL VAL A . n A 1 29 VAL 29 30 30 VAL VAL A . n A 1 30 ALA 30 31 31 ALA ALA A . n A 1 31 ALA 31 32 32 ALA ALA A . n A 1 32 ALA 32 33 33 ALA ALA A . n A 1 33 VAL 33 34 34 VAL VAL A . n A 1 34 VAL 34 35 35 VAL VAL A . n A 1 35 LEU 35 36 36 LEU LEU A . n A 1 36 GLU 36 37 37 GLU GLU A . n A 1 37 LYS 37 38 38 LYS LYS A . n A 1 38 GLU 38 39 39 GLU GLU A . n A 1 39 ILE 39 40 40 ILE ILE A . n A 1 40 GLU 40 41 41 GLU GLU A . n A 1 41 GLY 41 42 42 GLY GLY A . n A 1 42 ILE 42 43 43 ILE ILE A . n A 1 43 ASN 43 44 44 ASN ASN A . n A 1 44 ASP 44 45 45 ASP ASP A . n A 1 45 SER 45 46 46 SER SER A . n A 1 46 LYS 46 47 47 LYS LYS A . n A 1 47 GLN 47 48 48 GLN GLN A . n A 1 48 LEU 48 49 49 LEU LEU A . n A 1 49 SER 49 50 50 SER SER A . n A 1 50 PRO 50 51 51 PRO PRO A . n A 1 51 ALA 51 52 52 ALA ALA A . n A 1 52 LYS 52 53 53 LYS LYS A . n A 1 53 ARG 53 54 54 ARG ARG A . n A 1 54 GLU 54 55 55 GLU GLU A . n A 1 55 ARG 55 56 56 ARG ARG A . n A 1 56 LEU 56 57 57 LEU LEU A . n A 1 57 LEU 57 58 58 LEU LEU A . n A 1 58 ASP 58 59 59 ASP ASP A . n A 1 59 GLU 59 60 60 GLU GLU A . n A 1 60 ILE 60 61 61 ILE ILE A . n A 1 61 MET 61 62 62 MET MET A . n A 1 62 GLU 62 63 63 GLU GLU A . n A 1 63 LYS 63 64 64 LYS LYS A . n A 1 64 ALA 64 65 65 ALA ALA A . n A 1 65 ALA 65 66 66 ALA ALA A . n A 1 66 VAL 66 67 67 VAL VAL A . n A 1 67 GLY 67 68 68 GLY GLY A . n A 1 68 ILE 68 69 69 ILE ILE A . n A 1 69 GLY 69 70 70 GLY GLY A . n A 1 70 ILE 70 71 71 ILE ILE A . n A 1 71 ALA 71 72 72 ALA ALA A . n A 1 72 SER 72 73 73 SER SER A . n A 1 73 PRO 73 74 74 PRO PRO A . n A 1 74 GLU 74 75 75 GLU GLU A . n A 1 75 GLU 75 76 76 GLU GLU A . n A 1 76 ILE 76 77 77 ILE ILE A . n A 1 77 ASP 77 78 78 ASP ASP A . n A 1 78 LEU 78 79 79 LEU LEU A . n A 1 79 TYR 79 80 80 TYR TYR A . n A 1 80 ASN 80 81 81 ASN ASN A . n A 1 81 ILE 81 82 82 ILE ILE A . n A 1 82 PHE 82 83 83 PHE PHE A . n A 1 83 ASN 83 84 84 ASN ASN A . n A 1 84 ALA 84 85 85 ALA ALA A . n A 1 85 THR 85 86 86 THR THR A . n A 1 86 LYS 86 87 87 LYS LYS A . n A 1 87 LEU 87 88 88 LEU LEU A . n A 1 88 ALA 88 89 89 ALA ALA A . n A 1 89 MET 89 90 90 MET MET A . n A 1 90 ASN 90 91 91 ASN ASN A . n A 1 91 ARG 91 92 92 ARG ARG A . n A 1 92 ALA 92 93 93 ALA ALA A . n A 1 93 LEU 93 94 94 LEU LEU A . n A 1 94 GLU 94 95 95 GLU GLU A . n A 1 95 ASN 95 96 96 ASN ASN A . n A 1 96 LEU 96 97 97 LEU LEU A . n A 1 97 SER 97 98 98 SER SER A . n A 1 98 VAL 98 99 99 VAL VAL A . n A 1 99 LYS 99 100 100 LYS LYS A . n A 1 100 PRO 100 101 101 PRO PRO A . n A 1 101 SER 101 102 102 SER SER A . n A 1 102 PHE 102 103 103 PHE PHE A . n A 1 103 VAL 103 104 104 VAL VAL A . n A 1 104 LEU 104 105 105 LEU LEU A . n A 1 105 VAL 105 106 106 VAL VAL A . n A 1 106 ASN 106 107 107 ASN ASN A . n A 1 107 GLY 107 108 108 GLY GLY A . n A 1 108 LYS 108 109 109 LYS LYS A . n A 1 109 GLY 109 110 110 GLY GLY A . n A 1 110 ILE 110 111 111 ILE ILE A . n A 1 111 GLU 111 112 112 GLU GLU A . n A 1 112 LEU 112 113 113 LEU LEU A . n A 1 113 SER 113 114 114 SER SER A . n A 1 114 VAL 114 115 115 VAL VAL A . n A 1 115 PRO 115 116 116 PRO PRO A . n A 1 116 GLY 116 117 117 GLY GLY A . n A 1 117 THR 117 118 118 THR THR A . n A 1 118 CYS 118 119 119 CYS CYS A . n A 1 119 LEU 119 120 120 LEU LEU A . n A 1 120 VAL 120 121 121 VAL VAL A . n A 1 121 LYS 121 122 122 LYS LYS A . n A 1 122 GLY 122 123 123 GLY GLY A . n A 1 123 ASP 123 124 124 ASP ASP A . n A 1 124 GLN 124 125 125 GLN GLN A . n A 1 125 LYS 125 126 126 LYS LYS A . n A 1 126 SER 126 127 127 SER SER A . n A 1 127 LYS 127 128 128 LYS LYS A . n A 1 128 LEU 128 129 129 LEU LEU A . n A 1 129 ILE 129 130 130 ILE ILE A . n A 1 130 GLY 130 131 131 GLY GLY A . n A 1 131 ALA 131 132 132 ALA ALA A . n A 1 132 ALA 132 133 133 ALA ALA A . n A 1 133 SER 133 134 134 SER SER A . n A 1 134 ILE 134 135 135 ILE ILE A . n A 1 135 VAL 135 136 136 VAL VAL A . n A 1 136 ALA 136 137 137 ALA ALA A . n A 1 137 LYS 137 138 138 LYS LYS A . n A 1 138 VAL 138 139 139 VAL VAL A . n A 1 139 PHE 139 140 140 PHE PHE A . n A 1 140 ARG 140 141 141 ARG ARG A . n A 1 141 ASP 141 142 142 ASP ASP A . n A 1 142 ARG 142 143 143 ARG ARG A . n A 1 143 LEU 143 144 144 LEU LEU A . n A 1 144 MET 144 145 145 MET MET A . n A 1 145 SER 145 146 146 SER SER A . n A 1 146 GLU 146 147 147 GLU GLU A . n A 1 147 PHE 147 148 148 PHE PHE A . n A 1 148 HIS 148 149 149 HIS HIS A . n A 1 149 ARG 149 150 150 ARG ARG A . n A 1 150 MET 150 151 151 MET MET A . n A 1 151 TYR 151 152 152 TYR TYR A . n A 1 152 PRO 152 153 153 PRO PRO A . n A 1 153 GLN 153 154 154 GLN GLN A . n A 1 154 PHE 154 155 155 PHE PHE A . n A 1 155 SER 155 156 156 SER SER A . n A 1 156 PHE 156 157 157 PHE PHE A . n A 1 157 HIS 157 158 158 HIS HIS A . n A 1 158 LYS 158 159 159 LYS LYS A . n A 1 159 HIS 159 160 160 HIS HIS A . n A 1 160 LYS 160 161 161 LYS LYS A . n A 1 161 GLY 161 162 162 GLY GLY A . n A 1 162 TYR 162 163 163 TYR TYR A . n A 1 163 ALA 163 164 164 ALA ALA A . n A 1 164 THR 164 165 165 THR THR A . n A 1 165 LYS 165 166 166 LYS LYS A . n A 1 166 GLU 166 167 167 GLU GLU A . n A 1 167 HIS 167 168 168 HIS HIS A . n A 1 168 LEU 168 169 169 LEU LEU A . n A 1 169 ASN 169 170 170 ASN ASN A . n A 1 170 GLU 170 171 171 GLU GLU A . n A 1 171 ILE 171 172 172 ILE ILE A . n A 1 172 ARG 172 173 173 ARG ARG A . n A 1 173 LYS 173 174 174 LYS LYS A . n A 1 174 ASN 174 175 175 ASN ASN A . n A 1 175 GLY 175 176 176 GLY GLY A . n A 1 176 VAL 176 177 177 VAL VAL A . n A 1 177 LEU 177 178 178 LEU LEU A . n A 1 178 PRO 178 179 179 PRO PRO A . n A 1 179 ILE 179 180 180 ILE ILE A . n A 1 180 HIS 180 181 181 HIS HIS A . n A 1 181 ARG 181 182 182 ARG ARG A . n A 1 182 LEU 182 183 183 LEU LEU A . n A 1 183 SER 183 184 184 SER SER A . n A 1 184 PHE 184 185 185 PHE PHE A . n A 1 185 GLU 185 186 186 GLU GLU A . n A 1 186 PRO 186 187 187 PRO PRO A . n A 1 187 VAL 187 188 188 VAL VAL A . n A 1 188 LEU 188 189 189 LEU LEU A . n A 1 189 GLU 189 190 190 GLU GLU A . n A 1 190 LEU 190 191 191 LEU LEU A . n A 1 191 LEU 191 192 192 LEU LEU A . n A 1 192 THR 192 193 193 THR THR A . n A 1 193 ASP 193 194 194 ASP ASP A . n A 1 194 ASP 194 195 195 ASP ASP A . n A 1 195 LEU 195 196 196 LEU LEU A . n A 1 196 LEU 196 197 197 LEU LEU A . n A 1 197 ARG 197 198 198 ARG ARG A . n A 1 198 GLU 198 199 199 GLU GLU A . n A 1 199 PHE 199 200 200 PHE PHE A . n A 1 200 PHE 200 201 201 PHE PHE A . n A 1 201 GLU 201 202 202 GLU GLU A . n A 1 202 LYS 202 203 203 LYS LYS A . n A 1 203 GLY 203 204 204 GLY GLY A . n A 1 204 LEU 204 205 205 LEU LEU A . n A 1 205 ILE 205 206 206 ILE ILE A . n A 1 206 SER 206 207 207 SER SER A . n A 1 207 GLU 207 208 208 GLU GLU A . n A 1 208 ASN 208 209 209 ASN ASN A . n A 1 209 ARG 209 210 210 ARG ARG A . n A 1 210 PHE 210 211 211 PHE PHE A . n A 1 211 GLU 211 212 212 GLU GLU A . n A 1 212 ARG 212 213 213 ARG ARG A . n A 1 213 ILE 213 214 214 ILE ILE A . n A 1 214 LEU 214 215 215 LEU LEU A . n A 1 215 ASN 215 216 216 ASN ASN A . n A 1 216 LEU 216 217 217 LEU LEU A . n A 1 217 LEU 217 218 218 LEU LEU A . n A 1 218 GLY 218 219 219 GLY GLY A . n A 1 219 ALA 219 220 220 ALA ALA A . n A 1 220 ARG 220 221 221 ARG ARG A . n A 1 221 LYS 221 222 222 LYS LYS A . n A 1 222 SER 222 223 223 SER SER A . n B 2 1 DG 1 1 1 DG DG C . n B 2 2 DA 2 2 2 DA DA C . n B 2 3 DA 3 3 3 DA DA C . n B 2 4 DT 4 4 4 DT DT C . n B 2 5 DC 5 5 5 DC DC C . n B 2 6 DA 6 6 6 DA DA C . n B 2 7 DG 7 7 7 DG DG C . n B 2 8 DG 8 8 8 DG DG C . n B 2 9 DT 9 9 9 DT DT C . n B 2 10 DG 10 10 10 DG DG C . n B 2 11 DT 11 11 11 DT DT C . n B 2 12 DC 12 12 12 DC DC C . n C 3 1 DG 1 1 1 DG DG D . n C 3 2 DA 2 2 2 DA DA D . n C 3 3 DC 3 3 3 DC DC D . n C 3 4 DA 4 4 4 DA DA D . n C 3 5 DC 5 5 5 DC DC D . n C 3 6 C 6 6 6 C C D . n C 3 7 DT 7 7 7 DT DT D . n C 3 8 DG 8 8 8 DG DG D . n C 3 9 DA 9 9 9 DA DA D . n C 3 10 DT 10 10 10 DT DT D . n C 3 11 DT 11 11 11 DT DT D . n C 3 12 DC 12 12 12 DC DC D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN 1 1 1 MN MN A . E 4 MN 1 224 2 MN MN A . F 4 MN 1 13 3 MN MN C . G 5 HOH 1 225 1 HOH HOH A . G 5 HOH 2 226 3 HOH HOH A . G 5 HOH 3 227 4 HOH HOH A . G 5 HOH 4 228 5 HOH HOH A . G 5 HOH 5 229 6 HOH HOH A . G 5 HOH 6 230 7 HOH HOH A . G 5 HOH 7 231 8 HOH HOH A . G 5 HOH 8 232 9 HOH HOH A . G 5 HOH 9 233 10 HOH HOH A . G 5 HOH 10 234 13 HOH HOH A . G 5 HOH 11 235 16 HOH HOH A . G 5 HOH 12 236 19 HOH HOH A . G 5 HOH 13 237 20 HOH HOH A . G 5 HOH 14 238 21 HOH HOH A . G 5 HOH 15 239 24 HOH HOH A . G 5 HOH 16 240 26 HOH HOH A . G 5 HOH 17 241 27 HOH HOH A . G 5 HOH 18 242 28 HOH HOH A . G 5 HOH 19 243 30 HOH HOH A . G 5 HOH 20 244 31 HOH HOH A . G 5 HOH 21 245 32 HOH HOH A . G 5 HOH 22 246 33 HOH HOH A . G 5 HOH 23 247 35 HOH HOH A . G 5 HOH 24 248 37 HOH HOH A . G 5 HOH 25 249 38 HOH HOH A . G 5 HOH 26 250 40 HOH HOH A . G 5 HOH 27 251 41 HOH HOH A . G 5 HOH 28 252 42 HOH HOH A . G 5 HOH 29 253 43 HOH HOH A . G 5 HOH 30 254 44 HOH HOH A . G 5 HOH 31 255 45 HOH HOH A . G 5 HOH 32 256 46 HOH HOH A . G 5 HOH 33 257 48 HOH HOH A . G 5 HOH 34 258 49 HOH HOH A . G 5 HOH 35 259 25 HOH HOH A . H 5 HOH 1 14 14 HOH HOH C . H 5 HOH 2 15 15 HOH HOH C . H 5 HOH 3 16 2 HOH HOH C . H 5 HOH 4 17 17 HOH HOH C . H 5 HOH 5 18 18 HOH HOH C . H 5 HOH 6 19 11 HOH HOH C . H 5 HOH 7 20 12 HOH HOH C . H 5 HOH 8 22 22 HOH HOH C . H 5 HOH 9 36 36 HOH HOH C . I 5 HOH 1 23 23 HOH HOH D . I 5 HOH 2 29 29 HOH HOH D . I 5 HOH 3 34 34 HOH HOH D . I 5 HOH 4 39 39 HOH HOH D . I 5 HOH 5 47 47 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 38 ? CE ? A LYS 37 CE 2 1 Y 1 A LYS 38 ? NZ ? A LYS 37 NZ 3 1 Y 1 A GLU 41 ? CG ? A GLU 40 CG 4 1 Y 1 A GLU 41 ? CD ? A GLU 40 CD 5 1 Y 1 A GLU 41 ? OE1 ? A GLU 40 OE1 6 1 Y 1 A GLU 41 ? OE2 ? A GLU 40 OE2 7 1 Y 1 A LYS 222 ? CG ? A LYS 221 CG 8 1 Y 1 A LYS 222 ? CD ? A LYS 221 CD 9 1 Y 1 A LYS 222 ? CE ? A LYS 221 CE 10 1 Y 1 A LYS 222 ? NZ ? A LYS 221 NZ 11 1 Y 1 D DT 11 ? C7 ? C DT 11 C7 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.6.1_357)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3O3H _cell.length_a 104.658 _cell.length_b 48.571 _cell.length_c 77.910 _cell.angle_alpha 90.00 _cell.angle_beta 131.97 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3O3H _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3O3H _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_percent_sol 46.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;grown in 0.3 M MgCl2, 23% PEG 3350, 0.1 M HEPES. soaked in 30 mM MnCl2, 0.2 M NaCl, 35% PEG 3350, 0.1 M HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MgCl2 ? ? ? 1 2 1 'PEG 3350' ? ? ? 1 3 1 HEPES ? ? ? 1 4 2 MnCl2 ? ? ? 1 5 2 NaCl ? ? ? 1 6 2 'PEG 3350' ? ? ? 1 7 2 HEPES ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2009-11-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'MPG/DESY, HAMBURG BEAMLINE BW6' _diffrn_source.pdbx_synchrotron_site 'MPG/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline BW6 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5 # _reflns.entry_id 3O3H _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.8 _reflns.number_obs 6872 _reflns.number_all 7365 _reflns.percent_possible_obs 93.3 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 21 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_all 57.4 _reflns_shell.Rmerge_I_obs 0.33 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy 2.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3O3H _refine.ls_number_reflns_obs 6616 _refine.ls_number_reflns_all 7325 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.12 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.203 _refine.ls_d_res_high 2.800 _refine.ls_percent_reflns_obs 90.32 _refine.ls_R_factor_obs 0.1891 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1821 _refine.ls_R_factor_R_free 0.2533 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.76 _refine.ls_number_reflns_R_free 646 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 0.7086 _refine.aniso_B[2][2] 7.1715 _refine.aniso_B[3][3] -7.8801 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 2.7685 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.311 _refine.solvent_model_param_bsol 21.346 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.41 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1724 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 49 _refine_hist.number_atoms_total 2262 _refine_hist.d_res_high 2.800 _refine_hist.d_res_low 41.203 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 2311 'X-RAY DIFFRACTION' ? f_angle_d 1.168 ? ? 3214 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 19.588 ? ? 913 'X-RAY DIFFRACTION' ? f_chiral_restr 0.064 ? ? 364 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 333 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.800 3.0163 819 0.2806 64.00 0.3412 . . 101 . . . . 'X-RAY DIFFRACTION' . 3.0163 3.3197 1154 0.2136 90.00 0.2926 . . 161 . . . . 'X-RAY DIFFRACTION' . 3.3197 3.7998 1305 0.1750 98.00 0.2620 . . 114 . . . . 'X-RAY DIFFRACTION' . 3.7998 4.7862 1330 0.1508 99.00 0.2331 . . 133 . . . . 'X-RAY DIFFRACTION' . 4.7862 41.2071 1362 0.1691 99.00 0.2095 . . 137 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3O3H _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3O3H _struct.title 'T. maritima RNase H2 D107N in complex with nucleic acid substrate and manganese ions' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3O3H _struct_keywords.pdbx_keywords 'HYDROLASE/DNA-RNA hybrid' _struct_keywords.text 'RNase H fold, nuclease, HYDROLASE-DNA-RNA hybrid complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP RNH2_THEMA Q9X017 1 ;GIDELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKEIEGINDSKQLSPAKRERLLDEIMEKAAVGIGIASPEEIDLYN IFNATKLAMNRALENLSVKPSFVLVDGKGIELSVPGTCLVKGDQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHK GYATKEHLNEIRKNGVLPIHRLSFEPVLELLTDDLLREFFEKGLISENRFERILNLLGARKS ; 2 ? 2 PDB 3O3H 3O3H 2 ? ? ? 3 PDB 3O3H 3O3H 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3O3H A 1 ? 222 ? Q9X017 2 ? 223 ? 2 223 2 2 3O3H C 1 ? 12 ? 3O3H 1 ? 12 ? 1 12 3 3 3O3H D 1 ? 12 ? 3O3H 1 ? 12 ? 1 12 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3O3H _struct_ref_seq_dif.mon_id ASN _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 106 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9X017 _struct_ref_seq_dif.db_mon_id ASP _struct_ref_seq_dif.pdbx_seq_db_seq_num 107 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 107 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3700 ? 1 MORE -37 ? 1 'SSA (A^2)' 13170 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? GLY A 11 ? GLY A 2 GLY A 12 1 ? 11 HELX_P HELX_P2 2 ASP A 44 ? LEU A 48 ? ASP A 45 LEU A 49 5 ? 5 HELX_P HELX_P3 3 SER A 49 ? LYS A 63 ? SER A 50 LYS A 64 1 ? 15 HELX_P HELX_P4 4 SER A 72 ? ASN A 80 ? SER A 73 ASN A 81 1 ? 9 HELX_P HELX_P5 5 ASN A 80 ? LEU A 96 ? ASN A 81 LEU A 97 1 ? 17 HELX_P HELX_P6 6 LYS A 121 ? LYS A 125 ? LYS A 122 LYS A 126 5 ? 5 HELX_P HELX_P7 7 SER A 126 ? TYR A 151 ? SER A 127 TYR A 152 1 ? 26 HELX_P HELX_P8 8 SER A 155 ? LYS A 160 ? SER A 156 LYS A 161 1 ? 6 HELX_P HELX_P9 9 THR A 164 ? GLY A 175 ? THR A 165 GLY A 176 1 ? 12 HELX_P HELX_P10 10 PHE A 184 ? LEU A 191 ? PHE A 185 LEU A 192 1 ? 8 HELX_P HELX_P11 11 THR A 192 ? LYS A 202 ? THR A 193 LYS A 203 1 ? 11 HELX_P HELX_P12 12 SER A 206 ? ALA A 219 ? SER A 207 ALA A 220 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? D MN . MN ? ? ? 1_555 A ASP 123 OD2 ? ? A MN 1 A ASP 124 1_555 ? ? ? ? ? ? ? 2.399 ? ? metalc2 metalc ? ? D MN . MN ? ? ? 1_555 A ASP 123 OD1 ? ? A MN 1 A ASP 124 1_555 ? ? ? ? ? ? ? 2.738 ? ? metalc3 metalc ? ? D MN . MN ? ? ? 1_555 G HOH . O ? ? A MN 1 A HOH 246 1_555 ? ? ? ? ? ? ? 2.548 ? ? metalc4 metalc ? ? E MN . MN ? ? ? 1_555 G HOH . O ? ? A MN 224 A HOH 253 1_555 ? ? ? ? ? ? ? 2.493 ? ? metalc5 metalc ? ? E MN . MN ? ? ? 1_555 C C 6 OP1 ? ? A MN 224 D C 6 1_555 ? ? ? ? ? ? ? 2.392 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 12 N3 ? ? C DG 1 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 12 O2 ? ? C DG 1 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 12 N4 ? ? C DG 1 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DA 2 N1 ? ? ? 1_555 C DT 11 N3 ? ? C DA 2 D DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DA 2 N6 ? ? ? 1_555 C DT 11 O4 ? ? C DA 2 D DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 10 N3 ? ? C DA 3 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 10 O4 ? ? C DA 3 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 9 N1 ? ? C DT 4 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 9 N6 ? ? C DT 4 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 8 N1 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 8 O6 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 8 N2 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 7 N3 ? ? C DA 6 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 7 O4 ? ? C DA 6 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C C 6 N3 ? ? C DG 7 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C C 6 O2 ? ? C DG 7 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C C 6 N4 ? ? C DG 7 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 5 N3 ? ? C DG 8 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 5 O2 ? ? C DG 8 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 5 N4 ? ? C DG 8 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 4 N1 ? ? C DT 9 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 4 N6 ? ? C DT 9 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 3 N3 ? ? C DG 10 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 3 O2 ? ? C DG 10 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 3 N4 ? ? C DG 10 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DT 11 N3 ? ? ? 1_555 C DA 2 N1 ? ? C DT 11 D DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DT 11 O4 ? ? ? 1_555 C DA 2 N6 ? ? C DT 11 D DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 12 N3 ? ? ? 1_555 C DG 1 N1 ? ? C DC 12 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DC 12 N4 ? ? ? 1_555 C DG 1 O6 ? ? C DC 12 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 12 O2 ? ? ? 1_555 C DG 1 N2 ? ? C DC 12 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 123 ? A ASP 124 ? 1_555 MN ? D MN . ? A MN 1 ? 1_555 OD1 ? A ASP 123 ? A ASP 124 ? 1_555 50.1 ? 2 OD2 ? A ASP 123 ? A ASP 124 ? 1_555 MN ? D MN . ? A MN 1 ? 1_555 O ? G HOH . ? A HOH 246 ? 1_555 68.8 ? 3 OD1 ? A ASP 123 ? A ASP 124 ? 1_555 MN ? D MN . ? A MN 1 ? 1_555 O ? G HOH . ? A HOH 246 ? 1_555 84.2 ? 4 O ? G HOH . ? A HOH 253 ? 1_555 MN ? E MN . ? A MN 224 ? 1_555 OP1 ? C C 6 ? D C 6 ? 1_555 103.3 ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 64 ? ALA A 71 ? ALA A 65 ALA A 72 A 2 VAL A 28 ? LEU A 35 ? VAL A 29 LEU A 36 A 3 VAL A 13 ? ALA A 19 ? VAL A 14 ALA A 20 A 4 PHE A 102 ? ASN A 106 ? PHE A 103 ASN A 107 A 5 GLY A 116 ? LEU A 119 ? GLY A 117 LEU A 120 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 65 ? O ALA A 66 N VAL A 34 ? N VAL A 35 A 2 3 O VAL A 29 ? O VAL A 30 N ALA A 19 ? N ALA A 20 A 3 4 N ALA A 14 ? N ALA A 15 O LEU A 104 ? O LEU A 105 A 4 5 N VAL A 105 ? N VAL A 106 O THR A 117 ? O THR A 118 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 1 ? 3 'BINDING SITE FOR RESIDUE MN A 1' AC2 Software A MN 224 ? 6 'BINDING SITE FOR RESIDUE MN A 224' AC3 Software C MN 13 ? 1 'BINDING SITE FOR RESIDUE MN C 13' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASP A 123 ? ASP A 124 . ? 1_555 ? 2 AC1 3 HOH G . ? HOH A 246 . ? 1_555 ? 3 AC1 3 C C 6 ? C D 6 . ? 1_555 ? 4 AC2 6 ASP A 17 ? ASP A 18 . ? 1_555 ? 5 AC2 6 ASP A 44 ? ASP A 45 . ? 1_555 ? 6 AC2 6 ASP A 123 ? ASP A 124 . ? 1_555 ? 7 AC2 6 HOH G . ? HOH A 253 . ? 1_555 ? 8 AC2 6 C C 6 ? C D 6 . ? 1_555 ? 9 AC2 6 DT C 7 ? DT D 7 . ? 1_555 ? 10 AC3 1 DG B 10 ? DG C 10 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 C _pdbx_validate_rmsd_bond.auth_comp_id_1 DA _pdbx_validate_rmsd_bond.auth_seq_id_1 6 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 C _pdbx_validate_rmsd_bond.auth_comp_id_2 DA _pdbx_validate_rmsd_bond.auth_seq_id_2 6 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.381 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.038 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 110.74 108.30 2.44 0.30 N 2 1 "O4'" C DT 4 ? ? "C1'" C DT 4 ? ? N1 C DT 4 ? ? 115.53 108.30 7.23 0.30 N 3 1 "O4'" C DC 5 ? ? "C4'" C DC 5 ? ? "C3'" C DC 5 ? ? 98.77 104.50 -5.73 0.40 N 4 1 "C4'" C DC 5 ? ? "C3'" C DC 5 ? ? "C2'" C DC 5 ? ? 96.40 102.20 -5.80 0.70 N 5 1 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 112.71 108.30 4.41 0.30 N 6 1 "O4'" C DG 7 ? ? "C4'" C DG 7 ? ? "C3'" C DG 7 ? ? 101.23 104.50 -3.27 0.40 N 7 1 "O4'" C DG 7 ? ? "C1'" C DG 7 ? ? N9 C DG 7 ? ? 111.86 108.30 3.56 0.30 N 8 1 "O4'" C DT 9 ? ? "C1'" C DT 9 ? ? N1 C DT 9 ? ? 112.72 108.30 4.42 0.30 N 9 1 "C3'" D DG 1 ? ? "C2'" D DG 1 ? ? "C1'" D DG 1 ? ? 95.91 102.40 -6.49 0.80 N 10 1 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 113.66 108.30 5.36 0.30 N 11 1 "O4'" D DA 2 ? ? "C1'" D DA 2 ? ? N9 D DA 2 ? ? 112.13 108.30 3.83 0.30 N 12 1 "O4'" D DC 3 ? ? "C1'" D DC 3 ? ? N1 D DC 3 ? ? 112.69 108.30 4.39 0.30 N 13 1 "O4'" D DA 4 ? ? "C4'" D DA 4 ? ? "C3'" D DA 4 ? ? 100.93 104.50 -3.57 0.40 N 14 1 "O4'" D DC 5 ? ? "C4'" D DC 5 ? ? "C3'" D DC 5 ? ? 99.78 104.50 -4.72 0.40 N 15 1 "O4'" D DC 12 ? ? "C1'" D DC 12 ? ? N1 D DC 12 ? ? 111.64 108.30 3.34 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 62 ? ? -75.70 26.90 2 1 ASN A 81 ? ? 84.37 157.95 3 1 LYS A 109 ? ? -174.77 128.37 4 1 GLN A 154 ? ? -68.94 0.91 5 1 SER A 156 ? ? -80.82 49.40 6 1 LYS A 161 ? ? 55.01 18.20 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 C OP3 O N N 74 C P P N N 75 C OP1 O N N 76 C OP2 O N N 77 C "O5'" O N N 78 C "C5'" C N N 79 C "C4'" C N R 80 C "O4'" O N N 81 C "C3'" C N S 82 C "O3'" O N N 83 C "C2'" C N R 84 C "O2'" O N N 85 C "C1'" C N R 86 C N1 N N N 87 C C2 C N N 88 C O2 O N N 89 C N3 N N N 90 C C4 C N N 91 C N4 N N N 92 C C5 C N N 93 C C6 C N N 94 C HOP3 H N N 95 C HOP2 H N N 96 C "H5'" H N N 97 C "H5''" H N N 98 C "H4'" H N N 99 C "H3'" H N N 100 C "HO3'" H N N 101 C "H2'" H N N 102 C "HO2'" H N N 103 C "H1'" H N N 104 C H41 H N N 105 C H42 H N N 106 C H5 H N N 107 C H6 H N N 108 CYS N N N N 109 CYS CA C N R 110 CYS C C N N 111 CYS O O N N 112 CYS CB C N N 113 CYS SG S N N 114 CYS OXT O N N 115 CYS H H N N 116 CYS H2 H N N 117 CYS HA H N N 118 CYS HB2 H N N 119 CYS HB3 H N N 120 CYS HG H N N 121 CYS HXT H N N 122 DA OP3 O N N 123 DA P P N N 124 DA OP1 O N N 125 DA OP2 O N N 126 DA "O5'" O N N 127 DA "C5'" C N N 128 DA "C4'" C N R 129 DA "O4'" O N N 130 DA "C3'" C N S 131 DA "O3'" O N N 132 DA "C2'" C N N 133 DA "C1'" C N R 134 DA N9 N Y N 135 DA C8 C Y N 136 DA N7 N Y N 137 DA C5 C Y N 138 DA C6 C Y N 139 DA N6 N N N 140 DA N1 N Y N 141 DA C2 C Y N 142 DA N3 N Y N 143 DA C4 C Y N 144 DA HOP3 H N N 145 DA HOP2 H N N 146 DA "H5'" H N N 147 DA "H5''" H N N 148 DA "H4'" H N N 149 DA "H3'" H N N 150 DA "HO3'" H N N 151 DA "H2'" H N N 152 DA "H2''" H N N 153 DA "H1'" H N N 154 DA H8 H N N 155 DA H61 H N N 156 DA H62 H N N 157 DA H2 H N N 158 DC OP3 O N N 159 DC P P N N 160 DC OP1 O N N 161 DC OP2 O N N 162 DC "O5'" O N N 163 DC "C5'" C N N 164 DC "C4'" C N R 165 DC "O4'" O N N 166 DC "C3'" C N S 167 DC "O3'" O N N 168 DC "C2'" C N N 169 DC "C1'" C N R 170 DC N1 N N N 171 DC C2 C N N 172 DC O2 O N N 173 DC N3 N N N 174 DC C4 C N N 175 DC N4 N N N 176 DC C5 C N N 177 DC C6 C N N 178 DC HOP3 H N N 179 DC HOP2 H N N 180 DC "H5'" H N N 181 DC "H5''" H N N 182 DC "H4'" H N N 183 DC "H3'" H N N 184 DC "HO3'" H N N 185 DC "H2'" H N N 186 DC "H2''" H N N 187 DC "H1'" H N N 188 DC H41 H N N 189 DC H42 H N N 190 DC H5 H N N 191 DC H6 H N N 192 DG OP3 O N N 193 DG P P N N 194 DG OP1 O N N 195 DG OP2 O N N 196 DG "O5'" O N N 197 DG "C5'" C N N 198 DG "C4'" C N R 199 DG "O4'" O N N 200 DG "C3'" C N S 201 DG "O3'" O N N 202 DG "C2'" C N N 203 DG "C1'" C N R 204 DG N9 N Y N 205 DG C8 C Y N 206 DG N7 N Y N 207 DG C5 C Y N 208 DG C6 C N N 209 DG O6 O N N 210 DG N1 N N N 211 DG C2 C N N 212 DG N2 N N N 213 DG N3 N N N 214 DG C4 C Y N 215 DG HOP3 H N N 216 DG HOP2 H N N 217 DG "H5'" H N N 218 DG "H5''" H N N 219 DG "H4'" H N N 220 DG "H3'" H N N 221 DG "HO3'" H N N 222 DG "H2'" H N N 223 DG "H2''" H N N 224 DG "H1'" H N N 225 DG H8 H N N 226 DG H1 H N N 227 DG H21 H N N 228 DG H22 H N N 229 DT OP3 O N N 230 DT P P N N 231 DT OP1 O N N 232 DT OP2 O N N 233 DT "O5'" O N N 234 DT "C5'" C N N 235 DT "C4'" C N R 236 DT "O4'" O N N 237 DT "C3'" C N S 238 DT "O3'" O N N 239 DT "C2'" C N N 240 DT "C1'" C N R 241 DT N1 N N N 242 DT C2 C N N 243 DT O2 O N N 244 DT N3 N N N 245 DT C4 C N N 246 DT O4 O N N 247 DT C5 C N N 248 DT C7 C N N 249 DT C6 C N N 250 DT HOP3 H N N 251 DT HOP2 H N N 252 DT "H5'" H N N 253 DT "H5''" H N N 254 DT "H4'" H N N 255 DT "H3'" H N N 256 DT "HO3'" H N N 257 DT "H2'" H N N 258 DT "H2''" H N N 259 DT "H1'" H N N 260 DT H3 H N N 261 DT H71 H N N 262 DT H72 H N N 263 DT H73 H N N 264 DT H6 H N N 265 GLN N N N N 266 GLN CA C N S 267 GLN C C N N 268 GLN O O N N 269 GLN CB C N N 270 GLN CG C N N 271 GLN CD C N N 272 GLN OE1 O N N 273 GLN NE2 N N N 274 GLN OXT O N N 275 GLN H H N N 276 GLN H2 H N N 277 GLN HA H N N 278 GLN HB2 H N N 279 GLN HB3 H N N 280 GLN HG2 H N N 281 GLN HG3 H N N 282 GLN HE21 H N N 283 GLN HE22 H N N 284 GLN HXT H N N 285 GLU N N N N 286 GLU CA C N S 287 GLU C C N N 288 GLU O O N N 289 GLU CB C N N 290 GLU CG C N N 291 GLU CD C N N 292 GLU OE1 O N N 293 GLU OE2 O N N 294 GLU OXT O N N 295 GLU H H N N 296 GLU H2 H N N 297 GLU HA H N N 298 GLU HB2 H N N 299 GLU HB3 H N N 300 GLU HG2 H N N 301 GLU HG3 H N N 302 GLU HE2 H N N 303 GLU HXT H N N 304 GLY N N N N 305 GLY CA C N N 306 GLY C C N N 307 GLY O O N N 308 GLY OXT O N N 309 GLY H H N N 310 GLY H2 H N N 311 GLY HA2 H N N 312 GLY HA3 H N N 313 GLY HXT H N N 314 HIS N N N N 315 HIS CA C N S 316 HIS C C N N 317 HIS O O N N 318 HIS CB C N N 319 HIS CG C Y N 320 HIS ND1 N Y N 321 HIS CD2 C Y N 322 HIS CE1 C Y N 323 HIS NE2 N Y N 324 HIS OXT O N N 325 HIS H H N N 326 HIS H2 H N N 327 HIS HA H N N 328 HIS HB2 H N N 329 HIS HB3 H N N 330 HIS HD1 H N N 331 HIS HD2 H N N 332 HIS HE1 H N N 333 HIS HE2 H N N 334 HIS HXT H N N 335 HOH O O N N 336 HOH H1 H N N 337 HOH H2 H N N 338 ILE N N N N 339 ILE CA C N S 340 ILE C C N N 341 ILE O O N N 342 ILE CB C N S 343 ILE CG1 C N N 344 ILE CG2 C N N 345 ILE CD1 C N N 346 ILE OXT O N N 347 ILE H H N N 348 ILE H2 H N N 349 ILE HA H N N 350 ILE HB H N N 351 ILE HG12 H N N 352 ILE HG13 H N N 353 ILE HG21 H N N 354 ILE HG22 H N N 355 ILE HG23 H N N 356 ILE HD11 H N N 357 ILE HD12 H N N 358 ILE HD13 H N N 359 ILE HXT H N N 360 LEU N N N N 361 LEU CA C N S 362 LEU C C N N 363 LEU O O N N 364 LEU CB C N N 365 LEU CG C N N 366 LEU CD1 C N N 367 LEU CD2 C N N 368 LEU OXT O N N 369 LEU H H N N 370 LEU H2 H N N 371 LEU HA H N N 372 LEU HB2 H N N 373 LEU HB3 H N N 374 LEU HG H N N 375 LEU HD11 H N N 376 LEU HD12 H N N 377 LEU HD13 H N N 378 LEU HD21 H N N 379 LEU HD22 H N N 380 LEU HD23 H N N 381 LEU HXT H N N 382 LYS N N N N 383 LYS CA C N S 384 LYS C C N N 385 LYS O O N N 386 LYS CB C N N 387 LYS CG C N N 388 LYS CD C N N 389 LYS CE C N N 390 LYS NZ N N N 391 LYS OXT O N N 392 LYS H H N N 393 LYS H2 H N N 394 LYS HA H N N 395 LYS HB2 H N N 396 LYS HB3 H N N 397 LYS HG2 H N N 398 LYS HG3 H N N 399 LYS HD2 H N N 400 LYS HD3 H N N 401 LYS HE2 H N N 402 LYS HE3 H N N 403 LYS HZ1 H N N 404 LYS HZ2 H N N 405 LYS HZ3 H N N 406 LYS HXT H N N 407 MET N N N N 408 MET CA C N S 409 MET C C N N 410 MET O O N N 411 MET CB C N N 412 MET CG C N N 413 MET SD S N N 414 MET CE C N N 415 MET OXT O N N 416 MET H H N N 417 MET H2 H N N 418 MET HA H N N 419 MET HB2 H N N 420 MET HB3 H N N 421 MET HG2 H N N 422 MET HG3 H N N 423 MET HE1 H N N 424 MET HE2 H N N 425 MET HE3 H N N 426 MET HXT H N N 427 MN MN MN N N 428 PHE N N N N 429 PHE CA C N S 430 PHE C C N N 431 PHE O O N N 432 PHE CB C N N 433 PHE CG C Y N 434 PHE CD1 C Y N 435 PHE CD2 C Y N 436 PHE CE1 C Y N 437 PHE CE2 C Y N 438 PHE CZ C Y N 439 PHE OXT O N N 440 PHE H H N N 441 PHE H2 H N N 442 PHE HA H N N 443 PHE HB2 H N N 444 PHE HB3 H N N 445 PHE HD1 H N N 446 PHE HD2 H N N 447 PHE HE1 H N N 448 PHE HE2 H N N 449 PHE HZ H N N 450 PHE HXT H N N 451 PRO N N N N 452 PRO CA C N S 453 PRO C C N N 454 PRO O O N N 455 PRO CB C N N 456 PRO CG C N N 457 PRO CD C N N 458 PRO OXT O N N 459 PRO H H N N 460 PRO HA H N N 461 PRO HB2 H N N 462 PRO HB3 H N N 463 PRO HG2 H N N 464 PRO HG3 H N N 465 PRO HD2 H N N 466 PRO HD3 H N N 467 PRO HXT H N N 468 SER N N N N 469 SER CA C N S 470 SER C C N N 471 SER O O N N 472 SER CB C N N 473 SER OG O N N 474 SER OXT O N N 475 SER H H N N 476 SER H2 H N N 477 SER HA H N N 478 SER HB2 H N N 479 SER HB3 H N N 480 SER HG H N N 481 SER HXT H N N 482 THR N N N N 483 THR CA C N S 484 THR C C N N 485 THR O O N N 486 THR CB C N R 487 THR OG1 O N N 488 THR CG2 C N N 489 THR OXT O N N 490 THR H H N N 491 THR H2 H N N 492 THR HA H N N 493 THR HB H N N 494 THR HG1 H N N 495 THR HG21 H N N 496 THR HG22 H N N 497 THR HG23 H N N 498 THR HXT H N N 499 TYR N N N N 500 TYR CA C N S 501 TYR C C N N 502 TYR O O N N 503 TYR CB C N N 504 TYR CG C Y N 505 TYR CD1 C Y N 506 TYR CD2 C Y N 507 TYR CE1 C Y N 508 TYR CE2 C Y N 509 TYR CZ C Y N 510 TYR OH O N N 511 TYR OXT O N N 512 TYR H H N N 513 TYR H2 H N N 514 TYR HA H N N 515 TYR HB2 H N N 516 TYR HB3 H N N 517 TYR HD1 H N N 518 TYR HD2 H N N 519 TYR HE1 H N N 520 TYR HE2 H N N 521 TYR HH H N N 522 TYR HXT H N N 523 VAL N N N N 524 VAL CA C N S 525 VAL C C N N 526 VAL O O N N 527 VAL CB C N N 528 VAL CG1 C N N 529 VAL CG2 C N N 530 VAL OXT O N N 531 VAL H H N N 532 VAL H2 H N N 533 VAL HA H N N 534 VAL HB H N N 535 VAL HG11 H N N 536 VAL HG12 H N N 537 VAL HG13 H N N 538 VAL HG21 H N N 539 VAL HG22 H N N 540 VAL HG23 H N N 541 VAL HXT H N N 542 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 C OP3 P sing N N 70 C OP3 HOP3 sing N N 71 C P OP1 doub N N 72 C P OP2 sing N N 73 C P "O5'" sing N N 74 C OP2 HOP2 sing N N 75 C "O5'" "C5'" sing N N 76 C "C5'" "C4'" sing N N 77 C "C5'" "H5'" sing N N 78 C "C5'" "H5''" sing N N 79 C "C4'" "O4'" sing N N 80 C "C4'" "C3'" sing N N 81 C "C4'" "H4'" sing N N 82 C "O4'" "C1'" sing N N 83 C "C3'" "O3'" sing N N 84 C "C3'" "C2'" sing N N 85 C "C3'" "H3'" sing N N 86 C "O3'" "HO3'" sing N N 87 C "C2'" "O2'" sing N N 88 C "C2'" "C1'" sing N N 89 C "C2'" "H2'" sing N N 90 C "O2'" "HO2'" sing N N 91 C "C1'" N1 sing N N 92 C "C1'" "H1'" sing N N 93 C N1 C2 sing N N 94 C N1 C6 sing N N 95 C C2 O2 doub N N 96 C C2 N3 sing N N 97 C N3 C4 doub N N 98 C C4 N4 sing N N 99 C C4 C5 sing N N 100 C N4 H41 sing N N 101 C N4 H42 sing N N 102 C C5 C6 doub N N 103 C C5 H5 sing N N 104 C C6 H6 sing N N 105 CYS N CA sing N N 106 CYS N H sing N N 107 CYS N H2 sing N N 108 CYS CA C sing N N 109 CYS CA CB sing N N 110 CYS CA HA sing N N 111 CYS C O doub N N 112 CYS C OXT sing N N 113 CYS CB SG sing N N 114 CYS CB HB2 sing N N 115 CYS CB HB3 sing N N 116 CYS SG HG sing N N 117 CYS OXT HXT sing N N 118 DA OP3 P sing N N 119 DA OP3 HOP3 sing N N 120 DA P OP1 doub N N 121 DA P OP2 sing N N 122 DA P "O5'" sing N N 123 DA OP2 HOP2 sing N N 124 DA "O5'" "C5'" sing N N 125 DA "C5'" "C4'" sing N N 126 DA "C5'" "H5'" sing N N 127 DA "C5'" "H5''" sing N N 128 DA "C4'" "O4'" sing N N 129 DA "C4'" "C3'" sing N N 130 DA "C4'" "H4'" sing N N 131 DA "O4'" "C1'" sing N N 132 DA "C3'" "O3'" sing N N 133 DA "C3'" "C2'" sing N N 134 DA "C3'" "H3'" sing N N 135 DA "O3'" "HO3'" sing N N 136 DA "C2'" "C1'" sing N N 137 DA "C2'" "H2'" sing N N 138 DA "C2'" "H2''" sing N N 139 DA "C1'" N9 sing N N 140 DA "C1'" "H1'" sing N N 141 DA N9 C8 sing Y N 142 DA N9 C4 sing Y N 143 DA C8 N7 doub Y N 144 DA C8 H8 sing N N 145 DA N7 C5 sing Y N 146 DA C5 C6 sing Y N 147 DA C5 C4 doub Y N 148 DA C6 N6 sing N N 149 DA C6 N1 doub Y N 150 DA N6 H61 sing N N 151 DA N6 H62 sing N N 152 DA N1 C2 sing Y N 153 DA C2 N3 doub Y N 154 DA C2 H2 sing N N 155 DA N3 C4 sing Y N 156 DC OP3 P sing N N 157 DC OP3 HOP3 sing N N 158 DC P OP1 doub N N 159 DC P OP2 sing N N 160 DC P "O5'" sing N N 161 DC OP2 HOP2 sing N N 162 DC "O5'" "C5'" sing N N 163 DC "C5'" "C4'" sing N N 164 DC "C5'" "H5'" sing N N 165 DC "C5'" "H5''" sing N N 166 DC "C4'" "O4'" sing N N 167 DC "C4'" "C3'" sing N N 168 DC "C4'" "H4'" sing N N 169 DC "O4'" "C1'" sing N N 170 DC "C3'" "O3'" sing N N 171 DC "C3'" "C2'" sing N N 172 DC "C3'" "H3'" sing N N 173 DC "O3'" "HO3'" sing N N 174 DC "C2'" "C1'" sing N N 175 DC "C2'" "H2'" sing N N 176 DC "C2'" "H2''" sing N N 177 DC "C1'" N1 sing N N 178 DC "C1'" "H1'" sing N N 179 DC N1 C2 sing N N 180 DC N1 C6 sing N N 181 DC C2 O2 doub N N 182 DC C2 N3 sing N N 183 DC N3 C4 doub N N 184 DC C4 N4 sing N N 185 DC C4 C5 sing N N 186 DC N4 H41 sing N N 187 DC N4 H42 sing N N 188 DC C5 C6 doub N N 189 DC C5 H5 sing N N 190 DC C6 H6 sing N N 191 DG OP3 P sing N N 192 DG OP3 HOP3 sing N N 193 DG P OP1 doub N N 194 DG P OP2 sing N N 195 DG P "O5'" sing N N 196 DG OP2 HOP2 sing N N 197 DG "O5'" "C5'" sing N N 198 DG "C5'" "C4'" sing N N 199 DG "C5'" "H5'" sing N N 200 DG "C5'" "H5''" sing N N 201 DG "C4'" "O4'" sing N N 202 DG "C4'" "C3'" sing N N 203 DG "C4'" "H4'" sing N N 204 DG "O4'" "C1'" sing N N 205 DG "C3'" "O3'" sing N N 206 DG "C3'" "C2'" sing N N 207 DG "C3'" "H3'" sing N N 208 DG "O3'" "HO3'" sing N N 209 DG "C2'" "C1'" sing N N 210 DG "C2'" "H2'" sing N N 211 DG "C2'" "H2''" sing N N 212 DG "C1'" N9 sing N N 213 DG "C1'" "H1'" sing N N 214 DG N9 C8 sing Y N 215 DG N9 C4 sing Y N 216 DG C8 N7 doub Y N 217 DG C8 H8 sing N N 218 DG N7 C5 sing Y N 219 DG C5 C6 sing N N 220 DG C5 C4 doub Y N 221 DG C6 O6 doub N N 222 DG C6 N1 sing N N 223 DG N1 C2 sing N N 224 DG N1 H1 sing N N 225 DG C2 N2 sing N N 226 DG C2 N3 doub N N 227 DG N2 H21 sing N N 228 DG N2 H22 sing N N 229 DG N3 C4 sing N N 230 DT OP3 P sing N N 231 DT OP3 HOP3 sing N N 232 DT P OP1 doub N N 233 DT P OP2 sing N N 234 DT P "O5'" sing N N 235 DT OP2 HOP2 sing N N 236 DT "O5'" "C5'" sing N N 237 DT "C5'" "C4'" sing N N 238 DT "C5'" "H5'" sing N N 239 DT "C5'" "H5''" sing N N 240 DT "C4'" "O4'" sing N N 241 DT "C4'" "C3'" sing N N 242 DT "C4'" "H4'" sing N N 243 DT "O4'" "C1'" sing N N 244 DT "C3'" "O3'" sing N N 245 DT "C3'" "C2'" sing N N 246 DT "C3'" "H3'" sing N N 247 DT "O3'" "HO3'" sing N N 248 DT "C2'" "C1'" sing N N 249 DT "C2'" "H2'" sing N N 250 DT "C2'" "H2''" sing N N 251 DT "C1'" N1 sing N N 252 DT "C1'" "H1'" sing N N 253 DT N1 C2 sing N N 254 DT N1 C6 sing N N 255 DT C2 O2 doub N N 256 DT C2 N3 sing N N 257 DT N3 C4 sing N N 258 DT N3 H3 sing N N 259 DT C4 O4 doub N N 260 DT C4 C5 sing N N 261 DT C5 C7 sing N N 262 DT C5 C6 doub N N 263 DT C7 H71 sing N N 264 DT C7 H72 sing N N 265 DT C7 H73 sing N N 266 DT C6 H6 sing N N 267 GLN N CA sing N N 268 GLN N H sing N N 269 GLN N H2 sing N N 270 GLN CA C sing N N 271 GLN CA CB sing N N 272 GLN CA HA sing N N 273 GLN C O doub N N 274 GLN C OXT sing N N 275 GLN CB CG sing N N 276 GLN CB HB2 sing N N 277 GLN CB HB3 sing N N 278 GLN CG CD sing N N 279 GLN CG HG2 sing N N 280 GLN CG HG3 sing N N 281 GLN CD OE1 doub N N 282 GLN CD NE2 sing N N 283 GLN NE2 HE21 sing N N 284 GLN NE2 HE22 sing N N 285 GLN OXT HXT sing N N 286 GLU N CA sing N N 287 GLU N H sing N N 288 GLU N H2 sing N N 289 GLU CA C sing N N 290 GLU CA CB sing N N 291 GLU CA HA sing N N 292 GLU C O doub N N 293 GLU C OXT sing N N 294 GLU CB CG sing N N 295 GLU CB HB2 sing N N 296 GLU CB HB3 sing N N 297 GLU CG CD sing N N 298 GLU CG HG2 sing N N 299 GLU CG HG3 sing N N 300 GLU CD OE1 doub N N 301 GLU CD OE2 sing N N 302 GLU OE2 HE2 sing N N 303 GLU OXT HXT sing N N 304 GLY N CA sing N N 305 GLY N H sing N N 306 GLY N H2 sing N N 307 GLY CA C sing N N 308 GLY CA HA2 sing N N 309 GLY CA HA3 sing N N 310 GLY C O doub N N 311 GLY C OXT sing N N 312 GLY OXT HXT sing N N 313 HIS N CA sing N N 314 HIS N H sing N N 315 HIS N H2 sing N N 316 HIS CA C sing N N 317 HIS CA CB sing N N 318 HIS CA HA sing N N 319 HIS C O doub N N 320 HIS C OXT sing N N 321 HIS CB CG sing N N 322 HIS CB HB2 sing N N 323 HIS CB HB3 sing N N 324 HIS CG ND1 sing Y N 325 HIS CG CD2 doub Y N 326 HIS ND1 CE1 doub Y N 327 HIS ND1 HD1 sing N N 328 HIS CD2 NE2 sing Y N 329 HIS CD2 HD2 sing N N 330 HIS CE1 NE2 sing Y N 331 HIS CE1 HE1 sing N N 332 HIS NE2 HE2 sing N N 333 HIS OXT HXT sing N N 334 HOH O H1 sing N N 335 HOH O H2 sing N N 336 ILE N CA sing N N 337 ILE N H sing N N 338 ILE N H2 sing N N 339 ILE CA C sing N N 340 ILE CA CB sing N N 341 ILE CA HA sing N N 342 ILE C O doub N N 343 ILE C OXT sing N N 344 ILE CB CG1 sing N N 345 ILE CB CG2 sing N N 346 ILE CB HB sing N N 347 ILE CG1 CD1 sing N N 348 ILE CG1 HG12 sing N N 349 ILE CG1 HG13 sing N N 350 ILE CG2 HG21 sing N N 351 ILE CG2 HG22 sing N N 352 ILE CG2 HG23 sing N N 353 ILE CD1 HD11 sing N N 354 ILE CD1 HD12 sing N N 355 ILE CD1 HD13 sing N N 356 ILE OXT HXT sing N N 357 LEU N CA sing N N 358 LEU N H sing N N 359 LEU N H2 sing N N 360 LEU CA C sing N N 361 LEU CA CB sing N N 362 LEU CA HA sing N N 363 LEU C O doub N N 364 LEU C OXT sing N N 365 LEU CB CG sing N N 366 LEU CB HB2 sing N N 367 LEU CB HB3 sing N N 368 LEU CG CD1 sing N N 369 LEU CG CD2 sing N N 370 LEU CG HG sing N N 371 LEU CD1 HD11 sing N N 372 LEU CD1 HD12 sing N N 373 LEU CD1 HD13 sing N N 374 LEU CD2 HD21 sing N N 375 LEU CD2 HD22 sing N N 376 LEU CD2 HD23 sing N N 377 LEU OXT HXT sing N N 378 LYS N CA sing N N 379 LYS N H sing N N 380 LYS N H2 sing N N 381 LYS CA C sing N N 382 LYS CA CB sing N N 383 LYS CA HA sing N N 384 LYS C O doub N N 385 LYS C OXT sing N N 386 LYS CB CG sing N N 387 LYS CB HB2 sing N N 388 LYS CB HB3 sing N N 389 LYS CG CD sing N N 390 LYS CG HG2 sing N N 391 LYS CG HG3 sing N N 392 LYS CD CE sing N N 393 LYS CD HD2 sing N N 394 LYS CD HD3 sing N N 395 LYS CE NZ sing N N 396 LYS CE HE2 sing N N 397 LYS CE HE3 sing N N 398 LYS NZ HZ1 sing N N 399 LYS NZ HZ2 sing N N 400 LYS NZ HZ3 sing N N 401 LYS OXT HXT sing N N 402 MET N CA sing N N 403 MET N H sing N N 404 MET N H2 sing N N 405 MET CA C sing N N 406 MET CA CB sing N N 407 MET CA HA sing N N 408 MET C O doub N N 409 MET C OXT sing N N 410 MET CB CG sing N N 411 MET CB HB2 sing N N 412 MET CB HB3 sing N N 413 MET CG SD sing N N 414 MET CG HG2 sing N N 415 MET CG HG3 sing N N 416 MET SD CE sing N N 417 MET CE HE1 sing N N 418 MET CE HE2 sing N N 419 MET CE HE3 sing N N 420 MET OXT HXT sing N N 421 PHE N CA sing N N 422 PHE N H sing N N 423 PHE N H2 sing N N 424 PHE CA C sing N N 425 PHE CA CB sing N N 426 PHE CA HA sing N N 427 PHE C O doub N N 428 PHE C OXT sing N N 429 PHE CB CG sing N N 430 PHE CB HB2 sing N N 431 PHE CB HB3 sing N N 432 PHE CG CD1 doub Y N 433 PHE CG CD2 sing Y N 434 PHE CD1 CE1 sing Y N 435 PHE CD1 HD1 sing N N 436 PHE CD2 CE2 doub Y N 437 PHE CD2 HD2 sing N N 438 PHE CE1 CZ doub Y N 439 PHE CE1 HE1 sing N N 440 PHE CE2 CZ sing Y N 441 PHE CE2 HE2 sing N N 442 PHE CZ HZ sing N N 443 PHE OXT HXT sing N N 444 PRO N CA sing N N 445 PRO N CD sing N N 446 PRO N H sing N N 447 PRO CA C sing N N 448 PRO CA CB sing N N 449 PRO CA HA sing N N 450 PRO C O doub N N 451 PRO C OXT sing N N 452 PRO CB CG sing N N 453 PRO CB HB2 sing N N 454 PRO CB HB3 sing N N 455 PRO CG CD sing N N 456 PRO CG HG2 sing N N 457 PRO CG HG3 sing N N 458 PRO CD HD2 sing N N 459 PRO CD HD3 sing N N 460 PRO OXT HXT sing N N 461 SER N CA sing N N 462 SER N H sing N N 463 SER N H2 sing N N 464 SER CA C sing N N 465 SER CA CB sing N N 466 SER CA HA sing N N 467 SER C O doub N N 468 SER C OXT sing N N 469 SER CB OG sing N N 470 SER CB HB2 sing N N 471 SER CB HB3 sing N N 472 SER OG HG sing N N 473 SER OXT HXT sing N N 474 THR N CA sing N N 475 THR N H sing N N 476 THR N H2 sing N N 477 THR CA C sing N N 478 THR CA CB sing N N 479 THR CA HA sing N N 480 THR C O doub N N 481 THR C OXT sing N N 482 THR CB OG1 sing N N 483 THR CB CG2 sing N N 484 THR CB HB sing N N 485 THR OG1 HG1 sing N N 486 THR CG2 HG21 sing N N 487 THR CG2 HG22 sing N N 488 THR CG2 HG23 sing N N 489 THR OXT HXT sing N N 490 TYR N CA sing N N 491 TYR N H sing N N 492 TYR N H2 sing N N 493 TYR CA C sing N N 494 TYR CA CB sing N N 495 TYR CA HA sing N N 496 TYR C O doub N N 497 TYR C OXT sing N N 498 TYR CB CG sing N N 499 TYR CB HB2 sing N N 500 TYR CB HB3 sing N N 501 TYR CG CD1 doub Y N 502 TYR CG CD2 sing Y N 503 TYR CD1 CE1 sing Y N 504 TYR CD1 HD1 sing N N 505 TYR CD2 CE2 doub Y N 506 TYR CD2 HD2 sing N N 507 TYR CE1 CZ doub Y N 508 TYR CE1 HE1 sing N N 509 TYR CE2 CZ sing Y N 510 TYR CE2 HE2 sing N N 511 TYR CZ OH sing N N 512 TYR OH HH sing N N 513 TYR OXT HXT sing N N 514 VAL N CA sing N N 515 VAL N H sing N N 516 VAL N H2 sing N N 517 VAL CA C sing N N 518 VAL CA CB sing N N 519 VAL CA HA sing N N 520 VAL C O doub N N 521 VAL C OXT sing N N 522 VAL CB CG1 sing N N 523 VAL CB CG2 sing N N 524 VAL CB HB sing N N 525 VAL CG1 HG11 sing N N 526 VAL CG1 HG12 sing N N 527 VAL CG1 HG13 sing N N 528 VAL CG2 HG21 sing N N 529 VAL CG2 HG22 sing N N 530 VAL CG2 HG23 sing N N 531 VAL OXT HXT sing N N 532 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3O3H 'double helix' 3O3H 'a-form double helix' 3O3H 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 12 1_555 -0.452 -0.393 0.153 5.634 -2.388 -2.985 1 C_DG1:DC12_D C 1 ? D 12 ? 19 1 1 B DA 2 1_555 C DT 11 1_555 -0.992 -0.127 0.176 6.594 -5.670 -0.645 2 C_DA2:DT11_D C 2 ? D 11 ? 20 1 1 B DA 3 1_555 C DT 10 1_555 0.665 -0.281 0.005 1.597 -12.673 -1.298 3 C_DA3:DT10_D C 3 ? D 10 ? 20 1 1 B DT 4 1_555 C DA 9 1_555 -0.261 -0.069 -0.099 7.032 -10.667 -0.857 4 C_DT4:DA9_D C 4 ? D 9 ? 20 1 1 B DC 5 1_555 C DG 8 1_555 0.231 -0.429 0.211 -9.736 -6.419 -7.278 5 C_DC5:DG8_D C 5 ? D 8 ? 19 1 1 B DA 6 1_555 C DT 7 1_555 0.143 -0.171 0.139 -2.408 -18.004 0.513 6 C_DA6:DT7_D C 6 ? D 7 ? 20 1 1 B DG 7 1_555 C C 6 1_555 -0.328 0.041 -0.300 -10.694 -13.324 3.869 7 C_DG7:C6_D C 7 ? D 6 ? 19 1 1 B DG 8 1_555 C DC 5 1_555 -0.377 -0.110 -0.343 -14.843 -7.700 2.370 8 C_DG8:DC5_D C 8 ? D 5 ? 19 1 1 B DT 9 1_555 C DA 4 1_555 -0.124 -0.320 -0.015 2.260 6.469 4.856 9 C_DT9:DA4_D C 9 ? D 4 ? 20 1 1 B DG 10 1_555 C DC 3 1_555 0.177 0.034 -0.032 -16.208 -12.153 0.839 10 C_DG10:DC3_D C 10 ? D 3 ? 19 1 1 B DT 11 1_555 C DA 2 1_555 0.364 -0.293 0.025 -9.142 -17.226 -4.503 11 C_DT11:DA2_D C 11 ? D 2 ? 20 1 1 B DC 12 1_555 C DG 1 1_555 0.291 -0.387 0.068 -6.101 -4.709 -4.038 12 C_DC12:DG1_D C 12 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 12 1_555 B DA 2 1_555 C DT 11 1_555 -0.459 -0.655 3.271 -1.732 -0.498 29.276 -1.186 0.531 3.302 -0.984 3.423 29.330 1 CC_DG1DA2:DT11DC12_DD C 1 ? D 12 ? C 2 ? D 11 ? 1 B DA 2 1_555 C DT 11 1_555 B DA 3 1_555 C DT 10 1_555 -0.508 -0.347 3.447 0.979 3.196 41.827 -0.834 0.816 3.400 4.468 -1.368 41.955 2 CC_DA2DA3:DT10DT11_DD C 2 ? D 11 ? C 3 ? D 10 ? 1 B DA 3 1_555 C DT 10 1_555 B DT 4 1_555 C DA 9 1_555 0.298 -0.751 3.053 1.021 7.162 20.420 -4.556 -0.429 2.649 19.432 -2.770 21.650 3 CC_DA3DT4:DA9DT10_DD C 3 ? D 10 ? C 4 ? D 9 ? 1 B DT 4 1_555 C DA 9 1_555 B DC 5 1_555 C DG 8 1_555 -0.060 -0.409 3.684 -2.375 0.205 40.834 -0.610 -0.208 3.679 0.293 3.400 40.901 4 CC_DT4DC5:DG8DA9_DD C 4 ? D 9 ? C 5 ? D 8 ? 1 B DC 5 1_555 C DG 8 1_555 B DA 6 1_555 C DT 7 1_555 1.133 -1.441 2.981 3.942 10.991 37.532 -3.286 -1.278 2.576 16.597 -5.953 39.244 5 CC_DC5DA6:DT7DG8_DD C 5 ? D 8 ? C 6 ? D 7 ? 1 B DA 6 1_555 C DT 7 1_555 B DG 7 1_555 C C 6 1_555 -0.687 -2.177 3.723 1.623 12.941 11.469 -13.897 3.113 0.784 48.465 -6.078 17.352 6 CC_DA6DG7:C6DT7_DD C 6 ? D 7 ? C 7 ? D 6 ? 1 B DG 7 1_555 C C 6 1_555 B DG 8 1_555 C DC 5 1_555 -0.428 -1.799 3.516 -6.236 12.198 26.699 -5.943 -0.430 2.510 24.474 12.511 29.952 7 CC_DG7DG8:DC5C6_DD C 7 ? D 6 ? C 8 ? D 5 ? 1 B DG 8 1_555 C DC 5 1_555 B DT 9 1_555 C DA 4 1_555 -0.448 -1.116 3.001 -0.826 6.214 29.604 -3.253 0.710 2.726 11.993 1.593 30.246 8 CC_DG8DT9:DA4DC5_DD C 8 ? D 5 ? C 9 ? D 4 ? 1 B DT 9 1_555 C DA 4 1_555 B DG 10 1_555 C DC 3 1_555 -0.877 -0.438 3.849 -0.834 -3.170 38.498 -0.200 1.203 3.889 -4.797 1.262 38.632 9 CC_DT9DG10:DC3DA4_DD C 9 ? D 4 ? C 10 ? D 3 ? 1 B DG 10 1_555 C DC 3 1_555 B DT 11 1_555 C DA 2 1_555 -1.335 -0.835 3.040 -2.467 3.093 35.001 -1.809 1.864 3.041 5.122 4.085 35.216 10 CC_DG10DT11:DA2DC3_DD C 10 ? D 3 ? C 11 ? D 2 ? 1 B DT 11 1_555 C DA 2 1_555 B DC 12 1_555 C DG 1 1_555 0.575 -0.072 3.258 2.203 3.265 33.370 -0.659 -0.634 3.267 5.662 -3.820 33.595 11 CC_DT11DC12:DG1DA2_DD C 11 ? D 2 ? C 12 ? D 1 ? # _atom_sites.entry_id 3O3H _atom_sites.fract_transf_matrix[1][1] 0.009555 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008595 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020588 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017264 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S # loop_