data_3O3Y # _entry.id 3O3Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3O3Y pdb_00003o3y 10.2210/pdb3o3y/pdb RCSB RCSB060634 ? ? WWPDB D_1000060634 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3O3X . unspecified PDB 3O3Z . unspecified PDB 3O40 . unspecified PDB 3O42 . unspecified PDB 3O43 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3O3Y _pdbx_database_status.recvd_initial_deposition_date 2010-07-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Horne, W.S.' 1 'Johnson, L.M.' 2 'Gellman, S.H.' 3 # _citation.id primary _citation.title ;Chimeric and Non-Chimeric Foldamer Mimics of the CHR Segment of HIV Protein gp41: Evidence for the Importance of a Large Binding Interface in Six-Helix Bundle Formation ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Horne, W.S.' 1 ? primary 'Johnson, L.M.' 2 ? primary 'Gellman, S.H.' 3 ? # _cell.entry_id 3O3Y _cell.length_a 33.036 _cell.length_b 33.036 _cell.length_c 48.900 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3O3Y _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'chimeric alpha+alpha/beta peptide based on the CHR domain sequence of gp41' 4471.996 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 water nat water 18.015 28 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(ACE)TTWEAWD(XPC)AIA(B3E)YA(XCP)RIE(XCP)LI(XPC)AAQ(B3E)QQ(B3E)KNE(XCP)AL(XPC)EL (NH2) ; _entity_poly.pdbx_seq_one_letter_code_can XTTWEAWDXAIAEYAXRIEXLIXAAQEQQEKNEXALXELX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 THR n 1 3 THR n 1 4 TRP n 1 5 GLU n 1 6 ALA n 1 7 TRP n 1 8 ASP n 1 9 XPC n 1 10 ALA n 1 11 ILE n 1 12 ALA n 1 13 B3E n 1 14 TYR n 1 15 ALA n 1 16 XCP n 1 17 ARG n 1 18 ILE n 1 19 GLU n 1 20 XCP n 1 21 LEU n 1 22 ILE n 1 23 XPC n 1 24 ALA n 1 25 ALA n 1 26 GLN n 1 27 B3E n 1 28 GLN n 1 29 GLN n 1 30 B3E n 1 31 LYS n 1 32 ASN n 1 33 GLU n 1 34 XCP n 1 35 ALA n 1 36 LEU n 1 37 XPC n 1 38 GLU n 1 39 LEU n 1 40 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'synthetic peptide' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3O3Y _struct_ref.pdbx_db_accession 3O3Y _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code XTTWEAWDXAIAEYAXRIEXLIXAAQEQQEKNEXALXELX _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3O3Y _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 40 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3O3Y _struct_ref_seq.db_align_beg 0 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 39 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 39 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 B3E 'L-peptide linking' n '(3S)-3-AMINOHEXANEDIOIC ACID' ? 'C6 H11 N O4' 161.156 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 XCP peptide-like . '(1S,2S)-2-aminocyclopentanecarboxylic acid' ? 'C6 H11 N O2' 129.157 XPC peptide-like . '(3S,4R)-4-aminopyrrolidine-3-carboxylic acid' '(3R,4S)-3-Aminopyrrolidine-4-carboxylic acid' 'C5 H10 N2 O2' 130.145 # _exptl.entry_id 3O3Y _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.72 _exptl_crystal.density_percent_sol 28.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.3 M NaCl, 0.1 M Tris pH 8.5, 35% w/v PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2008-02-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'C(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97857 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97857 # _reflns.entry_id 3O3Y _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.35 _reflns.number_obs 7108 _reflns.number_all ? _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rsym_value 0.042 _reflns.pdbx_netI_over_sigmaI 44.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3O3Y _refine.ls_number_reflns_obs 6749 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.00 _refine.ls_d_res_high 1.35 _refine.ls_percent_reflns_obs 99.26 _refine.ls_R_factor_obs 0.14401 _refine.ls_R_factor_R_work 0.14274 _refine.ls_R_factor_R_free 0.17092 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 333 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.978 _refine.correlation_coeff_Fo_to_Fc_free 0.972 _refine.B_iso_mean 19.130 _refine.aniso_B[1][1] 1.18 _refine.aniso_B[2][2] 1.18 _refine.aniso_B[3][3] -1.77 _refine.aniso_B[1][2] 0.59 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 3F4Z' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.053 _refine.overall_SU_ML 0.035 _refine.overall_SU_B 1.970 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_R_factor_all ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 301 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 330 _refine_hist.d_res_high 1.35 _refine_hist.d_res_low 25.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.021 ? 332 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 235 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.916 2.098 ? 459 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.352 3.000 ? 580 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.316 5.000 ? 21 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39.368 25.714 ? 14 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.174 15.000 ? 39 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 3.466 15.000 ? 1 'X-RAY DIFFRACTION' ? r_chiral_restr 0.150 0.200 ? 51 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.015 ? 323 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.014 ? 61 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.965 1.500 ? 196 'X-RAY DIFFRACTION' ? r_mcbond_other 1.428 1.500 ? 79 'X-RAY DIFFRACTION' ? r_mcangle_it 4.430 2.000 ? 311 'X-RAY DIFFRACTION' ? r_scbond_it 6.687 3.000 ? 136 'X-RAY DIFFRACTION' ? r_scangle_it 10.301 4.500 ? 146 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 3.506 3.000 ? 567 'X-RAY DIFFRACTION' ? r_sphericity_free 16.897 3.000 ? 29 'X-RAY DIFFRACTION' ? r_sphericity_bonded 6.753 3.000 ? 553 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.351 _refine_ls_shell.d_res_low 1.386 _refine_ls_shell.number_reflns_R_work 484 _refine_ls_shell.R_factor_R_work 0.162 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.221 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 25 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3O3Y _struct.title 'A chimeric alpha+alpha/beta peptide based on the CHR domain sequence of gp41' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3O3Y _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'HIV fusion inhibitor, HIV gp41, mixed alpha-residue / beta-residue backbone, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ALA _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 6 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id XPC _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 37 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ALA _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 5 _struct_conf.end_auth_comp_id XPC _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 36 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 32 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 8 C ? ? ? 1_555 A XPC 9 N ? ? A ASP 7 A XPC 8 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A XPC 9 C ? ? ? 1_555 A ALA 10 N ? ? A XPC 8 A ALA 9 1_555 ? ? ? ? ? ? ? 1.310 ? ? covale3 covale both ? A ALA 12 C ? ? ? 1_555 A B3E 13 N ? ? A ALA 11 A B3E 12 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale4 covale both ? A B3E 13 C ? ? ? 1_555 A TYR 14 N ? ? A B3E 12 A TYR 13 1_555 ? ? ? ? ? ? ? 1.308 ? ? covale5 covale both ? A ALA 15 C ? ? ? 1_555 A XCP 16 N ? ? A ALA 14 A XCP 15 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale6 covale both ? A XCP 16 C ? ? ? 1_555 A ARG 17 N ? ? A XCP 15 A ARG 16 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale7 covale both ? A GLU 19 C ? ? ? 1_555 A XCP 20 N ? ? A GLU 18 A XCP 19 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale8 covale both ? A XCP 20 C ? ? ? 1_555 A LEU 21 N ? ? A XCP 19 A LEU 20 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale9 covale both ? A ILE 22 C ? ? ? 1_555 A XPC 23 N ? ? A ILE 21 A XPC 22 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale10 covale both ? A XPC 23 C ? ? ? 1_555 A ALA 24 N ? ? A XPC 22 A ALA 23 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale11 covale both ? A GLN 26 C ? ? ? 1_555 A B3E 27 N ? ? A GLN 25 A B3E 26 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale12 covale both ? A B3E 27 C ? ? ? 1_555 A GLN 28 N ? ? A B3E 26 A GLN 27 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale13 covale both ? A GLN 29 C ? ? ? 1_555 A B3E 30 N ? ? A GLN 28 A B3E 29 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale14 covale both ? A B3E 30 C ? ? ? 1_555 A LYS 31 N ? ? A B3E 29 A LYS 30 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale15 covale both ? A GLU 33 C ? ? ? 1_555 A XCP 34 N ? ? A GLU 32 A XCP 33 1_555 ? ? ? ? ? ? ? 1.308 ? ? covale16 covale both ? A XCP 34 C ? ? ? 1_555 A ALA 35 N ? ? A XCP 33 A ALA 34 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale17 covale both ? A LEU 36 C ? ? ? 1_555 A XPC 37 N ? ? A LEU 35 A XPC 36 1_555 ? ? ? ? ? ? ? 1.299 ? ? covale18 covale both ? A XPC 37 C ? ? ? 1_555 A GLU 38 N ? ? A XPC 36 A GLU 37 1_555 ? ? ? ? ? ? ? 1.291 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CL _struct_site.pdbx_auth_seq_id 40 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE CL A 40' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 XCP A 20 ? XCP A 19 . ? 1_555 ? 2 AC1 4 XPC A 23 ? XPC A 22 . ? 1_555 ? 3 AC1 4 GLN A 28 ? GLN A 27 . ? 5_664 ? 4 AC1 4 XPC A 37 ? XPC A 36 . ? 2_675 ? # _database_PDB_matrix.entry_id 3O3Y _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3O3Y _atom_sites.fract_transf_matrix[1][1] 0.030270 _atom_sites.fract_transf_matrix[1][2] 0.017476 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034953 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020450 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 ? ? ? A . n A 1 2 THR 2 1 ? ? ? A . n A 1 3 THR 3 2 2 THR THR A . n A 1 4 TRP 4 3 3 TRP TRP A . n A 1 5 GLU 5 4 4 GLU GLU A . n A 1 6 ALA 6 5 5 ALA ALA A . n A 1 7 TRP 7 6 6 TRP TRP A . n A 1 8 ASP 8 7 7 ASP ASP A . n A 1 9 XPC 9 8 8 XPC XPC A . n A 1 10 ALA 10 9 9 ALA ALA A . n A 1 11 ILE 11 10 10 ILE ILE A . n A 1 12 ALA 12 11 11 ALA ALA A . n A 1 13 B3E 13 12 12 B3E B3E A . n A 1 14 TYR 14 13 13 TYR TYR A . n A 1 15 ALA 15 14 14 ALA ALA A . n A 1 16 XCP 16 15 15 XCP XCP A . n A 1 17 ARG 17 16 16 ARG ARG A . n A 1 18 ILE 18 17 17 ILE ILE A . n A 1 19 GLU 19 18 18 GLU GLU A . n A 1 20 XCP 20 19 19 XCP XCP A . n A 1 21 LEU 21 20 20 LEU LEU A . n A 1 22 ILE 22 21 21 ILE ILE A . n A 1 23 XPC 23 22 22 XPC XPC A . n A 1 24 ALA 24 23 23 ALA ALA A . n A 1 25 ALA 25 24 24 ALA ALA A . n A 1 26 GLN 26 25 25 GLN GLN A . n A 1 27 B3E 27 26 26 B3E B3E A . n A 1 28 GLN 28 27 27 GLN GLN A . n A 1 29 GLN 29 28 28 GLN GLN A . n A 1 30 B3E 30 29 29 B3E B3E A . n A 1 31 LYS 31 30 30 LYS LYS A . n A 1 32 ASN 32 31 31 ASN ASN A . n A 1 33 GLU 33 32 32 GLU GLU A . n A 1 34 XCP 34 33 33 XCP XCP A . n A 1 35 ALA 35 34 34 ALA ALA A . n A 1 36 LEU 36 35 35 LEU LEU A . n A 1 37 XPC 37 36 36 XPC XPC A . n A 1 38 GLU 38 37 37 GLU GLU A . n A 1 39 LEU 39 38 38 LEU LEU A . n A 1 40 NH2 40 39 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 40 1 CL CL A . C 3 HOH 1 41 1 HOH HOH A . C 3 HOH 2 42 2 HOH HOH A . C 3 HOH 3 43 3 HOH HOH A . C 3 HOH 4 44 4 HOH HOH A . C 3 HOH 5 45 5 HOH HOH A . C 3 HOH 6 46 6 HOH HOH A . C 3 HOH 7 47 7 HOH HOH A . C 3 HOH 8 48 8 HOH HOH A . C 3 HOH 9 49 9 HOH HOH A . C 3 HOH 10 50 10 HOH HOH A . C 3 HOH 11 51 11 HOH HOH A . C 3 HOH 12 52 12 HOH HOH A . C 3 HOH 13 53 13 HOH HOH A . C 3 HOH 14 54 14 HOH HOH A . C 3 HOH 15 55 15 HOH HOH A . C 3 HOH 16 56 16 HOH HOH A . C 3 HOH 17 57 17 HOH HOH A . C 3 HOH 18 58 18 HOH HOH A . C 3 HOH 19 59 19 HOH HOH A . C 3 HOH 20 60 20 HOH HOH A . C 3 HOH 21 61 21 HOH HOH A . C 3 HOH 22 62 22 HOH HOH A . C 3 HOH 23 63 23 HOH HOH A . C 3 HOH 24 64 24 HOH HOH A . C 3 HOH 25 65 25 HOH HOH A . C 3 HOH 26 66 26 HOH HOH A . C 3 HOH 27 67 27 HOH HOH A . C 3 HOH 28 68 28 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A B3E 13 A B3E 12 ? GLU '(3S)-3-AMINOHEXANEDIOIC ACID' 2 A B3E 27 A B3E 26 ? GLU '(3S)-3-AMINOHEXANEDIOIC ACID' 3 A B3E 30 A B3E 29 ? GLU '(3S)-3-AMINOHEXANEDIOIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 66 ? C HOH . 2 1 A HOH 66 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-24 2 'Structure model' 1 1 2023-09-06 3 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' 5 3 'Structure model' 'Atomic model' 6 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_struct_special_symmetry 6 2 'Structure model' struct_conn 7 2 'Structure model' struct_ref_seq 8 2 'Structure model' struct_site 9 3 'Structure model' atom_site 10 3 'Structure model' atom_site_anisotrop 11 3 'Structure model' chem_comp_atom 12 3 'Structure model' chem_comp_bond 13 3 'Structure model' pdbx_validate_main_chain_plane 14 3 'Structure model' pdbx_validate_peptide_omega 15 3 'Structure model' pdbx_validate_torsion # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 2 'Structure model' '_struct_ref_seq.db_align_beg' 5 2 'Structure model' '_struct_ref_seq.db_align_end' 6 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 2 'Structure model' '_struct_site.pdbx_auth_seq_id' 9 3 'Structure model' '_atom_site.B_iso_or_equiv' 10 3 'Structure model' '_atom_site.Cartn_x' 11 3 'Structure model' '_atom_site.Cartn_y' 12 3 'Structure model' '_atom_site.Cartn_z' 13 3 'Structure model' '_atom_site.auth_atom_id' 14 3 'Structure model' '_atom_site.label_atom_id' 15 3 'Structure model' '_atom_site_anisotrop.U[1][1]' 16 3 'Structure model' '_atom_site_anisotrop.U[1][2]' 17 3 'Structure model' '_atom_site_anisotrop.U[1][3]' 18 3 'Structure model' '_atom_site_anisotrop.U[2][2]' 19 3 'Structure model' '_atom_site_anisotrop.U[2][3]' 20 3 'Structure model' '_atom_site_anisotrop.U[3][3]' 21 3 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 22 3 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 23 3 'Structure model' '_chem_comp_atom.atom_id' 24 3 'Structure model' '_chem_comp_bond.atom_id_1' 25 3 'Structure model' '_chem_comp_bond.atom_id_2' 26 3 'Structure model' '_pdbx_validate_peptide_omega.auth_comp_id_1' 27 3 'Structure model' '_pdbx_validate_peptide_omega.auth_comp_id_2' 28 3 'Structure model' '_pdbx_validate_peptide_omega.auth_seq_id_1' 29 3 'Structure model' '_pdbx_validate_peptide_omega.auth_seq_id_2' 30 3 'Structure model' '_pdbx_validate_peptide_omega.omega' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MD2 'data collection' 'diffractometer software' ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0070 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OE1 A GLU 18 ? ? 1_555 HZ2 A LYS 30 ? ? 5_664 1.49 2 1 O A GLU 37 ? ? 1_555 O A HOH 68 ? ? 5_564 1.92 3 1 OH A TYR 13 ? ? 1_555 O A HOH 67 ? ? 2_565 1.97 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A GLU 18 ? ? N A XCP 19 ? ? CA A XCP 19 ? ? 136.80 121.70 15.10 2.50 Y 2 1 C A LEU 35 ? ? N A XPC 36 ? ? CA A XPC 36 ? ? 146.92 121.70 25.22 2.50 Y # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ASP A 7 ? ? XPC A 8 ? ? 135.01 2 1 B3E A 12 ? ? TYR A 13 ? ? 142.05 3 1 ALA A 14 ? ? XCP A 15 ? ? 137.52 4 1 GLU A 18 ? ? XCP A 19 ? ? 142.49 5 1 ILE A 21 ? ? XPC A 22 ? ? 140.17 6 1 B3E A 26 ? ? GLN A 27 ? ? 141.83 7 1 B3E A 29 ? ? LYS A 30 ? ? 142.95 8 1 GLU A 32 ? ? XCP A 33 ? ? 136.28 9 1 LEU A 35 ? ? XPC A 36 ? ? 147.87 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 B3E A 12 ? ? -18.25 2 1 B3E A 26 ? ? -18.59 3 1 B3E A 29 ? ? -18.77 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A THR 2 ? OG1 ? A THR 3 OG1 2 1 Y 1 A THR 2 ? CG2 ? A THR 3 CG2 3 1 Y 1 A GLU 4 ? CG ? A GLU 5 CG 4 1 Y 1 A GLU 4 ? CD ? A GLU 5 CD 5 1 Y 1 A GLU 4 ? OE1 ? A GLU 5 OE1 6 1 Y 1 A GLU 4 ? OE2 ? A GLU 5 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ACE 0 ? A ACE 1 2 1 Y 1 A THR 1 ? A THR 2 3 1 Y 1 A NH2 39 ? A NH2 40 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 ASP N N N N 65 ASP CA C N S 66 ASP C C N N 67 ASP O O N N 68 ASP CB C N N 69 ASP CG C N N 70 ASP OD1 O N N 71 ASP OD2 O N N 72 ASP OXT O N N 73 ASP H H N N 74 ASP H2 H N N 75 ASP HA H N N 76 ASP HB2 H N N 77 ASP HB3 H N N 78 ASP HD2 H N N 79 ASP HXT H N N 80 B3E N N N N 81 B3E CA C N S 82 B3E CG C N N 83 B3E CD C N N 84 B3E CE C N N 85 B3E OF2 O N N 86 B3E OF1 O N N 87 B3E CB C N N 88 B3E C C N N 89 B3E O O N N 90 B3E OXT O N N 91 B3E H H N N 92 B3E H2 H N N 93 B3E HA H N N 94 B3E HG2 H N N 95 B3E HG3 H N N 96 B3E HD2 H N N 97 B3E HD3 H N N 98 B3E HOF1 H N N 99 B3E HB1 H N N 100 B3E HB2 H N N 101 B3E HXT H N N 102 CL CL CL N N 103 GLN N N N N 104 GLN CA C N S 105 GLN C C N N 106 GLN O O N N 107 GLN CB C N N 108 GLN CG C N N 109 GLN CD C N N 110 GLN OE1 O N N 111 GLN NE2 N N N 112 GLN OXT O N N 113 GLN H H N N 114 GLN H2 H N N 115 GLN HA H N N 116 GLN HB2 H N N 117 GLN HB3 H N N 118 GLN HG2 H N N 119 GLN HG3 H N N 120 GLN HE21 H N N 121 GLN HE22 H N N 122 GLN HXT H N N 123 GLU N N N N 124 GLU CA C N S 125 GLU C C N N 126 GLU O O N N 127 GLU CB C N N 128 GLU CG C N N 129 GLU CD C N N 130 GLU OE1 O N N 131 GLU OE2 O N N 132 GLU OXT O N N 133 GLU H H N N 134 GLU H2 H N N 135 GLU HA H N N 136 GLU HB2 H N N 137 GLU HB3 H N N 138 GLU HG2 H N N 139 GLU HG3 H N N 140 GLU HE2 H N N 141 GLU HXT H N N 142 HOH O O N N 143 HOH H1 H N N 144 HOH H2 H N N 145 ILE N N N N 146 ILE CA C N S 147 ILE C C N N 148 ILE O O N N 149 ILE CB C N S 150 ILE CG1 C N N 151 ILE CG2 C N N 152 ILE CD1 C N N 153 ILE OXT O N N 154 ILE H H N N 155 ILE H2 H N N 156 ILE HA H N N 157 ILE HB H N N 158 ILE HG12 H N N 159 ILE HG13 H N N 160 ILE HG21 H N N 161 ILE HG22 H N N 162 ILE HG23 H N N 163 ILE HD11 H N N 164 ILE HD12 H N N 165 ILE HD13 H N N 166 ILE HXT H N N 167 LEU N N N N 168 LEU CA C N S 169 LEU C C N N 170 LEU O O N N 171 LEU CB C N N 172 LEU CG C N N 173 LEU CD1 C N N 174 LEU CD2 C N N 175 LEU OXT O N N 176 LEU H H N N 177 LEU H2 H N N 178 LEU HA H N N 179 LEU HB2 H N N 180 LEU HB3 H N N 181 LEU HG H N N 182 LEU HD11 H N N 183 LEU HD12 H N N 184 LEU HD13 H N N 185 LEU HD21 H N N 186 LEU HD22 H N N 187 LEU HD23 H N N 188 LEU HXT H N N 189 LYS N N N N 190 LYS CA C N S 191 LYS C C N N 192 LYS O O N N 193 LYS CB C N N 194 LYS CG C N N 195 LYS CD C N N 196 LYS CE C N N 197 LYS NZ N N N 198 LYS OXT O N N 199 LYS H H N N 200 LYS H2 H N N 201 LYS HA H N N 202 LYS HB2 H N N 203 LYS HB3 H N N 204 LYS HG2 H N N 205 LYS HG3 H N N 206 LYS HD2 H N N 207 LYS HD3 H N N 208 LYS HE2 H N N 209 LYS HE3 H N N 210 LYS HZ1 H N N 211 LYS HZ2 H N N 212 LYS HZ3 H N N 213 LYS HXT H N N 214 NH2 N N N N 215 NH2 HN1 H N N 216 NH2 HN2 H N N 217 THR N N N N 218 THR CA C N S 219 THR C C N N 220 THR O O N N 221 THR CB C N R 222 THR OG1 O N N 223 THR CG2 C N N 224 THR OXT O N N 225 THR H H N N 226 THR H2 H N N 227 THR HA H N N 228 THR HB H N N 229 THR HG1 H N N 230 THR HG21 H N N 231 THR HG22 H N N 232 THR HG23 H N N 233 THR HXT H N N 234 TRP N N N N 235 TRP CA C N S 236 TRP C C N N 237 TRP O O N N 238 TRP CB C N N 239 TRP CG C Y N 240 TRP CD1 C Y N 241 TRP CD2 C Y N 242 TRP NE1 N Y N 243 TRP CE2 C Y N 244 TRP CE3 C Y N 245 TRP CZ2 C Y N 246 TRP CZ3 C Y N 247 TRP CH2 C Y N 248 TRP OXT O N N 249 TRP H H N N 250 TRP H2 H N N 251 TRP HA H N N 252 TRP HB2 H N N 253 TRP HB3 H N N 254 TRP HD1 H N N 255 TRP HE1 H N N 256 TRP HE3 H N N 257 TRP HZ2 H N N 258 TRP HZ3 H N N 259 TRP HH2 H N N 260 TRP HXT H N N 261 TYR N N N N 262 TYR CA C N S 263 TYR C C N N 264 TYR O O N N 265 TYR CB C N N 266 TYR CG C Y N 267 TYR CD1 C Y N 268 TYR CD2 C Y N 269 TYR CE1 C Y N 270 TYR CE2 C Y N 271 TYR CZ C Y N 272 TYR OH O N N 273 TYR OXT O N N 274 TYR H H N N 275 TYR H2 H N N 276 TYR HA H N N 277 TYR HB2 H N N 278 TYR HB3 H N N 279 TYR HD1 H N N 280 TYR HD2 H N N 281 TYR HE1 H N N 282 TYR HE2 H N N 283 TYR HH H N N 284 TYR HXT H N N 285 XCP N N N N 286 XCP CB C N S 287 XCP CG C N N 288 XCP CD C N N 289 XCP CE C N N 290 XCP CA C N S 291 XCP C C N N 292 XCP O O N N 293 XCP H H N N 294 XCP HB H N N 295 XCP HG H N N 296 XCP HGA H N N 297 XCP HD H N N 298 XCP HDA H N N 299 XCP HE H N N 300 XCP HEA H N N 301 XCP HA H N N 302 XCP H2 H N N 303 XCP OXT O N N 304 XCP HXT H N N 305 XPC N N N N 306 XPC CB C N R 307 XPC CG C N N 308 XPC ND N N N 309 XPC CE C N N 310 XPC CA C N S 311 XPC C C N N 312 XPC O O N N 313 XPC H H N N 314 XPC HB H N N 315 XPC HG H N N 316 XPC HGA H N N 317 XPC HND H N N 318 XPC HE H N N 319 XPC HEA H N N 320 XPC HA H N N 321 XPC H2 H N N 322 XPC OXT O N N 323 XPC HXT H N N 324 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 ASP N CA sing N N 61 ASP N H sing N N 62 ASP N H2 sing N N 63 ASP CA C sing N N 64 ASP CA CB sing N N 65 ASP CA HA sing N N 66 ASP C O doub N N 67 ASP C OXT sing N N 68 ASP CB CG sing N N 69 ASP CB HB2 sing N N 70 ASP CB HB3 sing N N 71 ASP CG OD1 doub N N 72 ASP CG OD2 sing N N 73 ASP OD2 HD2 sing N N 74 ASP OXT HXT sing N N 75 B3E N CA sing N N 76 B3E N H sing N N 77 B3E N H2 sing N N 78 B3E CA CG sing N N 79 B3E CA CB sing N N 80 B3E CA HA sing N N 81 B3E CG CD sing N N 82 B3E CG HG2 sing N N 83 B3E CG HG3 sing N N 84 B3E CD CE sing N N 85 B3E CD HD2 sing N N 86 B3E CD HD3 sing N N 87 B3E CE OF2 doub N N 88 B3E CE OF1 sing N N 89 B3E OF1 HOF1 sing N N 90 B3E CB C sing N N 91 B3E CB HB1 sing N N 92 B3E CB HB2 sing N N 93 B3E C OXT sing N N 94 B3E C O doub N N 95 B3E OXT HXT sing N N 96 GLN N CA sing N N 97 GLN N H sing N N 98 GLN N H2 sing N N 99 GLN CA C sing N N 100 GLN CA CB sing N N 101 GLN CA HA sing N N 102 GLN C O doub N N 103 GLN C OXT sing N N 104 GLN CB CG sing N N 105 GLN CB HB2 sing N N 106 GLN CB HB3 sing N N 107 GLN CG CD sing N N 108 GLN CG HG2 sing N N 109 GLN CG HG3 sing N N 110 GLN CD OE1 doub N N 111 GLN CD NE2 sing N N 112 GLN NE2 HE21 sing N N 113 GLN NE2 HE22 sing N N 114 GLN OXT HXT sing N N 115 GLU N CA sing N N 116 GLU N H sing N N 117 GLU N H2 sing N N 118 GLU CA C sing N N 119 GLU CA CB sing N N 120 GLU CA HA sing N N 121 GLU C O doub N N 122 GLU C OXT sing N N 123 GLU CB CG sing N N 124 GLU CB HB2 sing N N 125 GLU CB HB3 sing N N 126 GLU CG CD sing N N 127 GLU CG HG2 sing N N 128 GLU CG HG3 sing N N 129 GLU CD OE1 doub N N 130 GLU CD OE2 sing N N 131 GLU OE2 HE2 sing N N 132 GLU OXT HXT sing N N 133 HOH O H1 sing N N 134 HOH O H2 sing N N 135 ILE N CA sing N N 136 ILE N H sing N N 137 ILE N H2 sing N N 138 ILE CA C sing N N 139 ILE CA CB sing N N 140 ILE CA HA sing N N 141 ILE C O doub N N 142 ILE C OXT sing N N 143 ILE CB CG1 sing N N 144 ILE CB CG2 sing N N 145 ILE CB HB sing N N 146 ILE CG1 CD1 sing N N 147 ILE CG1 HG12 sing N N 148 ILE CG1 HG13 sing N N 149 ILE CG2 HG21 sing N N 150 ILE CG2 HG22 sing N N 151 ILE CG2 HG23 sing N N 152 ILE CD1 HD11 sing N N 153 ILE CD1 HD12 sing N N 154 ILE CD1 HD13 sing N N 155 ILE OXT HXT sing N N 156 LEU N CA sing N N 157 LEU N H sing N N 158 LEU N H2 sing N N 159 LEU CA C sing N N 160 LEU CA CB sing N N 161 LEU CA HA sing N N 162 LEU C O doub N N 163 LEU C OXT sing N N 164 LEU CB CG sing N N 165 LEU CB HB2 sing N N 166 LEU CB HB3 sing N N 167 LEU CG CD1 sing N N 168 LEU CG CD2 sing N N 169 LEU CG HG sing N N 170 LEU CD1 HD11 sing N N 171 LEU CD1 HD12 sing N N 172 LEU CD1 HD13 sing N N 173 LEU CD2 HD21 sing N N 174 LEU CD2 HD22 sing N N 175 LEU CD2 HD23 sing N N 176 LEU OXT HXT sing N N 177 LYS N CA sing N N 178 LYS N H sing N N 179 LYS N H2 sing N N 180 LYS CA C sing N N 181 LYS CA CB sing N N 182 LYS CA HA sing N N 183 LYS C O doub N N 184 LYS C OXT sing N N 185 LYS CB CG sing N N 186 LYS CB HB2 sing N N 187 LYS CB HB3 sing N N 188 LYS CG CD sing N N 189 LYS CG HG2 sing N N 190 LYS CG HG3 sing N N 191 LYS CD CE sing N N 192 LYS CD HD2 sing N N 193 LYS CD HD3 sing N N 194 LYS CE NZ sing N N 195 LYS CE HE2 sing N N 196 LYS CE HE3 sing N N 197 LYS NZ HZ1 sing N N 198 LYS NZ HZ2 sing N N 199 LYS NZ HZ3 sing N N 200 LYS OXT HXT sing N N 201 NH2 N HN1 sing N N 202 NH2 N HN2 sing N N 203 THR N CA sing N N 204 THR N H sing N N 205 THR N H2 sing N N 206 THR CA C sing N N 207 THR CA CB sing N N 208 THR CA HA sing N N 209 THR C O doub N N 210 THR C OXT sing N N 211 THR CB OG1 sing N N 212 THR CB CG2 sing N N 213 THR CB HB sing N N 214 THR OG1 HG1 sing N N 215 THR CG2 HG21 sing N N 216 THR CG2 HG22 sing N N 217 THR CG2 HG23 sing N N 218 THR OXT HXT sing N N 219 TRP N CA sing N N 220 TRP N H sing N N 221 TRP N H2 sing N N 222 TRP CA C sing N N 223 TRP CA CB sing N N 224 TRP CA HA sing N N 225 TRP C O doub N N 226 TRP C OXT sing N N 227 TRP CB CG sing N N 228 TRP CB HB2 sing N N 229 TRP CB HB3 sing N N 230 TRP CG CD1 doub Y N 231 TRP CG CD2 sing Y N 232 TRP CD1 NE1 sing Y N 233 TRP CD1 HD1 sing N N 234 TRP CD2 CE2 doub Y N 235 TRP CD2 CE3 sing Y N 236 TRP NE1 CE2 sing Y N 237 TRP NE1 HE1 sing N N 238 TRP CE2 CZ2 sing Y N 239 TRP CE3 CZ3 doub Y N 240 TRP CE3 HE3 sing N N 241 TRP CZ2 CH2 doub Y N 242 TRP CZ2 HZ2 sing N N 243 TRP CZ3 CH2 sing Y N 244 TRP CZ3 HZ3 sing N N 245 TRP CH2 HH2 sing N N 246 TRP OXT HXT sing N N 247 TYR N CA sing N N 248 TYR N H sing N N 249 TYR N H2 sing N N 250 TYR CA C sing N N 251 TYR CA CB sing N N 252 TYR CA HA sing N N 253 TYR C O doub N N 254 TYR C OXT sing N N 255 TYR CB CG sing N N 256 TYR CB HB2 sing N N 257 TYR CB HB3 sing N N 258 TYR CG CD1 doub Y N 259 TYR CG CD2 sing Y N 260 TYR CD1 CE1 sing Y N 261 TYR CD1 HD1 sing N N 262 TYR CD2 CE2 doub Y N 263 TYR CD2 HD2 sing N N 264 TYR CE1 CZ doub Y N 265 TYR CE1 HE1 sing N N 266 TYR CE2 CZ sing Y N 267 TYR CE2 HE2 sing N N 268 TYR CZ OH sing N N 269 TYR OH HH sing N N 270 TYR OXT HXT sing N N 271 XCP N H sing N N 272 XCP N H2 sing N N 273 XCP CB N sing N N 274 XCP CB CG sing N N 275 XCP CG HGA sing N N 276 XCP CD CG sing N N 277 XCP CD HD sing N N 278 XCP CE CD sing N N 279 XCP CE CA sing N N 280 XCP CE HE sing N N 281 XCP CA CB sing N N 282 XCP CA HA sing N N 283 XCP C CA sing N N 284 XCP C OXT sing N N 285 XCP O C doub N N 286 XCP HB CB sing N N 287 XCP HG CG sing N N 288 XCP HDA CD sing N N 289 XCP HEA CE sing N N 290 XCP OXT HXT sing N N 291 XPC N H sing N N 292 XPC N H2 sing N N 293 XPC CB N sing N N 294 XPC CB CG sing N N 295 XPC CG HGA sing N N 296 XPC ND CG sing N N 297 XPC ND HND sing N N 298 XPC CE ND sing N N 299 XPC CE HE sing N N 300 XPC CE CA sing N N 301 XPC CA CB sing N N 302 XPC CA HA sing N N 303 XPC C CA sing N N 304 XPC C OXT sing N N 305 XPC O C doub N N 306 XPC HB CB sing N N 307 XPC HG CG sing N N 308 XPC HEA CE sing N N 309 XPC OXT HXT sing N N 310 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3F4Z _pdbx_initial_refinement_model.details 'PDB entry 3F4Z' #