HEADER RNA BINDING PROTEIN 01-AUG-10 3O7X TITLE CRYSTAL STRUCTURE OF HUMAN HILI PAZ DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PIWI-LIKE PROTEIN 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: PAZ DOMAIN (UNP RESIDUES 389-525); COMPND 5 SYNONYM: CANCER/TESTIS ANTIGEN 80, CT80; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIWIL2, HILI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28B KEYWDS PIWI, RNA SILENCING, PI-RNA, HIWI1, HILI, PAZ DOMAIN, RNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.TIAN,D.K.SIMANSHU,J.-B.MA,D.J.PATEL REVDAT 4 21-FEB-24 3O7X 1 SEQADV REVDAT 3 08-NOV-17 3O7X 1 REMARK REVDAT 2 02-FEB-11 3O7X 1 JRNL REVDAT 1 12-JAN-11 3O7X 0 JRNL AUTH Y.TIAN,D.K.SIMANSHU,J.B.MA,D.J.PATEL JRNL TITL INAUGURAL ARTICLE: STRUCTURAL BASIS FOR PIRNA JRNL TITL 2 2'-O-METHYLATED 3'-END RECOGNITION BY PIWI PAZ JRNL TITL 3 (PIWI/ARGONAUTE/ZWILLE) DOMAINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 903 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21193640 JRNL DOI 10.1073/PNAS.1017762108 REMARK 2 REMARK 2 RESOLUTION. 2.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.4_153 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 13346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3905 - 6.2960 1.00 1436 159 0.2356 0.2889 REMARK 3 2 6.2960 - 4.9995 1.00 1343 149 0.2259 0.2413 REMARK 3 3 4.9995 - 4.3682 0.99 1334 151 0.1949 0.2291 REMARK 3 4 4.3682 - 3.9691 0.99 1310 145 0.2150 0.2721 REMARK 3 5 3.9691 - 3.6847 0.97 1278 141 0.2572 0.3232 REMARK 3 6 3.6847 - 3.4676 0.96 1273 146 0.2698 0.3316 REMARK 3 7 3.4676 - 3.2940 0.93 1216 133 0.2958 0.3226 REMARK 3 8 3.2940 - 3.1506 0.89 1162 125 0.2915 0.3817 REMARK 3 9 3.1506 - 3.0294 0.73 951 110 0.3188 0.3675 REMARK 3 10 3.0294 - 2.9248 0.55 711 73 0.3491 0.4515 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 41.94 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.32140 REMARK 3 B22 (A**2) : 14.85120 REMARK 3 B33 (A**2) : -30.17260 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3648 REMARK 3 ANGLE : 0.887 4938 REMARK 3 CHIRALITY : 0.052 551 REMARK 3 PLANARITY : 0.003 637 REMARK 3 DIHEDRAL : 15.532 1340 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 16:89 OR RESSEQ REMARK 3 106:114 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 16:89 OR RESSEQ REMARK 3 106:114 ) REMARK 3 ATOM PAIRS NUMBER : 690 REMARK 3 RMSD : 0.057 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 16:89 OR RESSEQ REMARK 3 106:114 ) REMARK 3 SELECTION : CHAIN C AND (RESSEQ 16:89 OR RESSEQ REMARK 3 106:114 ) REMARK 3 ATOM PAIRS NUMBER : 690 REMARK 3 RMSD : 0.061 REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 16:89 OR RESSEQ REMARK 3 106:114 ) REMARK 3 SELECTION : CHAIN D AND (RESSEQ 16:89 OR RESSEQ REMARK 3 106:114 ) REMARK 3 ATOM PAIRS NUMBER : 694 REMARK 3 RMSD : 0.063 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3O7X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : CRYOGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL SI(111) SIDE BOUNCE REMARK 200 MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14092 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.30700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP, SOLOMON REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4-8% PEG4000 AND 50 MM MGSO4 IN 50 MM REMARK 280 MES BUFFER, PH 5.6 TO 6.1, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.25500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 113.25500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.26750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.47450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.26750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.47450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 113.25500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.26750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 71.47450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 113.25500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.26750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 71.47450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 81.07000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 113.25500 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 121.60500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 339.76500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 502 REMARK 465 ILE A 503 REMARK 465 PRO A 504 REMARK 465 GLU A 505 REMARK 465 LYS A 506 REMARK 465 MET A 507 REMARK 465 LYS A 508 REMARK 465 LYS A 509 REMARK 465 ASP A 510 REMARK 465 PHE A 511 REMARK 465 ARG A 512 REMARK 465 ALA A 513 REMARK 465 MET A 514 REMARK 465 LYS A 515 REMARK 465 ASP A 516 REMARK 465 LEU A 517 REMARK 465 ALA A 518 REMARK 465 GLN A 519 REMARK 465 GLN A 520 REMARK 465 ILE A 521 REMARK 465 ASN A 522 REMARK 465 LEU A 523 REMARK 465 SER A 524 REMARK 465 PRO A 525 REMARK 465 SER B 477 REMARK 465 GLU B 478 REMARK 465 ARG B 479 REMARK 465 GLN B 480 REMARK 465 ASP B 481 REMARK 465 ASN B 482 REMARK 465 HIS B 483 REMARK 465 GLY B 484 REMARK 465 MET B 485 REMARK 465 LEU B 486 REMARK 465 LEU B 487 REMARK 465 LYS B 488 REMARK 465 GLY B 502 REMARK 465 ILE B 503 REMARK 465 PRO B 504 REMARK 465 GLU B 505 REMARK 465 LYS B 506 REMARK 465 MET B 507 REMARK 465 LYS B 508 REMARK 465 LYS B 509 REMARK 465 ASP B 510 REMARK 465 PHE B 511 REMARK 465 ARG B 512 REMARK 465 ALA B 513 REMARK 465 MET B 514 REMARK 465 LYS B 515 REMARK 465 ASP B 516 REMARK 465 LEU B 517 REMARK 465 ALA B 518 REMARK 465 GLN B 519 REMARK 465 GLN B 520 REMARK 465 ILE B 521 REMARK 465 ASN B 522 REMARK 465 LEU B 523 REMARK 465 SER B 524 REMARK 465 PRO B 525 REMARK 465 ARG C 479 REMARK 465 GLN C 480 REMARK 465 ASP C 481 REMARK 465 ASN C 482 REMARK 465 HIS C 483 REMARK 465 GLY C 484 REMARK 465 MET C 485 REMARK 465 LEU C 486 REMARK 465 LEU C 487 REMARK 465 GLY C 502 REMARK 465 ILE C 503 REMARK 465 PRO C 504 REMARK 465 GLU C 505 REMARK 465 LYS C 506 REMARK 465 MET C 507 REMARK 465 LYS C 508 REMARK 465 LYS C 509 REMARK 465 ASP C 510 REMARK 465 PHE C 511 REMARK 465 ARG C 512 REMARK 465 ALA C 513 REMARK 465 MET C 514 REMARK 465 LYS C 515 REMARK 465 ASP C 516 REMARK 465 LEU C 517 REMARK 465 ALA C 518 REMARK 465 GLN C 519 REMARK 465 GLN C 520 REMARK 465 ILE C 521 REMARK 465 ASN C 522 REMARK 465 LEU C 523 REMARK 465 SER C 524 REMARK 465 PRO C 525 REMARK 465 SER D 386 REMARK 465 ASN D 387 REMARK 465 ASN D 482 REMARK 465 HIS D 483 REMARK 465 GLY D 484 REMARK 465 MET D 485 REMARK 465 GLY D 502 REMARK 465 ILE D 503 REMARK 465 PRO D 504 REMARK 465 GLU D 505 REMARK 465 LYS D 506 REMARK 465 MET D 507 REMARK 465 LYS D 508 REMARK 465 LYS D 509 REMARK 465 ASP D 510 REMARK 465 PHE D 511 REMARK 465 ARG D 512 REMARK 465 ALA D 513 REMARK 465 MET D 514 REMARK 465 LYS D 515 REMARK 465 ASP D 516 REMARK 465 LEU D 517 REMARK 465 ALA D 518 REMARK 465 GLN D 519 REMARK 465 GLN D 520 REMARK 465 ILE D 521 REMARK 465 ASN D 522 REMARK 465 LEU D 523 REMARK 465 SER D 524 REMARK 465 PRO D 525 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 411 CG CD CE NZ REMARK 470 LYS A 488 CG CD CE NZ REMARK 470 LYS B 458 CG CD CE NZ REMARK 470 GLU C 403 CG CD OE1 OE2 REMARK 470 LYS C 411 CG CD CE NZ REMARK 470 LYS C 488 CG CD CE NZ REMARK 470 GLU D 478 CG CD OE1 OE2 REMARK 470 ASP D 481 CG OD1 OD2 REMARK 470 LEU D 486 CG CD1 CD2 REMARK 470 LYS D 488 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 421 CD - NE - CZ ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG A 421 NE - CZ - NH1 ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG A 421 NE - CZ - NH2 ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG C 421 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG C 421 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 387 115.53 -32.57 REMARK 500 ASP A 388 144.76 173.41 REMARK 500 ASN A 423 22.58 -157.29 REMARK 500 ASN A 424 18.23 46.45 REMARK 500 MET A 444 -167.98 -76.80 REMARK 500 ASP A 481 -93.32 51.40 REMARK 500 ASN A 482 69.96 -36.73 REMARK 500 HIS A 483 85.39 3.87 REMARK 500 LEU A 487 -103.33 -103.56 REMARK 500 ASN B 387 1.81 -153.63 REMARK 500 ASN B 423 22.36 -157.43 REMARK 500 ASN B 424 19.13 46.49 REMARK 500 MET B 444 -169.18 -76.84 REMARK 500 GLU B 490 123.61 177.31 REMARK 500 ASN C 423 21.81 -157.09 REMARK 500 ASN C 424 17.56 47.90 REMARK 500 MET C 444 -169.92 -77.20 REMARK 500 CYS D 389 103.31 -43.88 REMARK 500 VAL D 390 -34.75 -36.15 REMARK 500 ASP D 392 -19.67 -48.43 REMARK 500 ASN D 423 22.25 -156.87 REMARK 500 ASN D 424 17.86 46.56 REMARK 500 PRO D 476 -71.11 -68.23 REMARK 500 SER D 477 -84.99 173.43 REMARK 500 GLU D 478 118.65 -15.17 REMARK 500 GLN D 480 -150.54 159.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3O3I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN HIWI1 PAZ DOMAIN (RESIDUES 277-399) IN REMARK 900 COMPLEX WITH 14-MER RNA (12-BP + 2-NT OVERHANG) CONTAINING 2'-OH AT REMARK 900 ITS 3'-END REMARK 900 RELATED ID: 3O6E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN HIWI1 PAZ DOMAIN (RESIDUES 277-399) IN REMARK 900 COMPLEX WITH 14-MER RNA (12-BP + 2-NT OVERHANG) CONTAINING 2'-OCH3 REMARK 900 AT ITS 3'-END REMARK 900 RELATED ID: 3O7V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN HIWI1 (V361M) PAZ DOMAIN (RESIDUES 277- REMARK 900 399) IN COMPLEX WITH 14-MER RNA (12-BP + 2-NT OVERHANG) CONTAINING REMARK 900 2'-OCH3 AT ITS 3'-END DBREF 3O7X A 387 525 UNP Q8TC59 PIWL2_HUMAN 387 525 DBREF 3O7X B 387 525 UNP Q8TC59 PIWL2_HUMAN 387 525 DBREF 3O7X C 387 525 UNP Q8TC59 PIWL2_HUMAN 387 525 DBREF 3O7X D 387 525 UNP Q8TC59 PIWL2_HUMAN 387 525 SEQADV 3O7X SER A 386 UNP Q8TC59 EXPRESSION TAG SEQADV 3O7X SER B 386 UNP Q8TC59 EXPRESSION TAG SEQADV 3O7X SER C 386 UNP Q8TC59 EXPRESSION TAG SEQADV 3O7X SER D 386 UNP Q8TC59 EXPRESSION TAG SEQRES 1 A 140 SER ASN ASP CYS VAL LEU ASP VAL MET HIS ALA ILE TYR SEQRES 2 A 140 GLN GLN ASN LYS GLU HIS PHE GLN ASP GLU CYS THR LYS SEQRES 3 A 140 LEU LEU VAL GLY ASN ILE VAL ILE THR ARG TYR ASN ASN SEQRES 4 A 140 ARG THR TYR ARG ILE ASP ASP VAL ASP TRP ASN LYS THR SEQRES 5 A 140 PRO LYS ASP SER PHE THR MET SER ASP GLY LYS GLU ILE SEQRES 6 A 140 THR PHE LEU GLU TYR TYR SER LYS ASN TYR GLY ILE THR SEQRES 7 A 140 VAL LYS GLU GLU ASP GLN PRO LEU LEU ILE HIS ARG PRO SEQRES 8 A 140 SER GLU ARG GLN ASP ASN HIS GLY MET LEU LEU LYS GLY SEQRES 9 A 140 GLU ILE LEU LEU LEU PRO GLU LEU SER PHE MET THR GLY SEQRES 10 A 140 ILE PRO GLU LYS MET LYS LYS ASP PHE ARG ALA MET LYS SEQRES 11 A 140 ASP LEU ALA GLN GLN ILE ASN LEU SER PRO SEQRES 1 B 140 SER ASN ASP CYS VAL LEU ASP VAL MET HIS ALA ILE TYR SEQRES 2 B 140 GLN GLN ASN LYS GLU HIS PHE GLN ASP GLU CYS THR LYS SEQRES 3 B 140 LEU LEU VAL GLY ASN ILE VAL ILE THR ARG TYR ASN ASN SEQRES 4 B 140 ARG THR TYR ARG ILE ASP ASP VAL ASP TRP ASN LYS THR SEQRES 5 B 140 PRO LYS ASP SER PHE THR MET SER ASP GLY LYS GLU ILE SEQRES 6 B 140 THR PHE LEU GLU TYR TYR SER LYS ASN TYR GLY ILE THR SEQRES 7 B 140 VAL LYS GLU GLU ASP GLN PRO LEU LEU ILE HIS ARG PRO SEQRES 8 B 140 SER GLU ARG GLN ASP ASN HIS GLY MET LEU LEU LYS GLY SEQRES 9 B 140 GLU ILE LEU LEU LEU PRO GLU LEU SER PHE MET THR GLY SEQRES 10 B 140 ILE PRO GLU LYS MET LYS LYS ASP PHE ARG ALA MET LYS SEQRES 11 B 140 ASP LEU ALA GLN GLN ILE ASN LEU SER PRO SEQRES 1 C 140 SER ASN ASP CYS VAL LEU ASP VAL MET HIS ALA ILE TYR SEQRES 2 C 140 GLN GLN ASN LYS GLU HIS PHE GLN ASP GLU CYS THR LYS SEQRES 3 C 140 LEU LEU VAL GLY ASN ILE VAL ILE THR ARG TYR ASN ASN SEQRES 4 C 140 ARG THR TYR ARG ILE ASP ASP VAL ASP TRP ASN LYS THR SEQRES 5 C 140 PRO LYS ASP SER PHE THR MET SER ASP GLY LYS GLU ILE SEQRES 6 C 140 THR PHE LEU GLU TYR TYR SER LYS ASN TYR GLY ILE THR SEQRES 7 C 140 VAL LYS GLU GLU ASP GLN PRO LEU LEU ILE HIS ARG PRO SEQRES 8 C 140 SER GLU ARG GLN ASP ASN HIS GLY MET LEU LEU LYS GLY SEQRES 9 C 140 GLU ILE LEU LEU LEU PRO GLU LEU SER PHE MET THR GLY SEQRES 10 C 140 ILE PRO GLU LYS MET LYS LYS ASP PHE ARG ALA MET LYS SEQRES 11 C 140 ASP LEU ALA GLN GLN ILE ASN LEU SER PRO SEQRES 1 D 140 SER ASN ASP CYS VAL LEU ASP VAL MET HIS ALA ILE TYR SEQRES 2 D 140 GLN GLN ASN LYS GLU HIS PHE GLN ASP GLU CYS THR LYS SEQRES 3 D 140 LEU LEU VAL GLY ASN ILE VAL ILE THR ARG TYR ASN ASN SEQRES 4 D 140 ARG THR TYR ARG ILE ASP ASP VAL ASP TRP ASN LYS THR SEQRES 5 D 140 PRO LYS ASP SER PHE THR MET SER ASP GLY LYS GLU ILE SEQRES 6 D 140 THR PHE LEU GLU TYR TYR SER LYS ASN TYR GLY ILE THR SEQRES 7 D 140 VAL LYS GLU GLU ASP GLN PRO LEU LEU ILE HIS ARG PRO SEQRES 8 D 140 SER GLU ARG GLN ASP ASN HIS GLY MET LEU LEU LYS GLY SEQRES 9 D 140 GLU ILE LEU LEU LEU PRO GLU LEU SER PHE MET THR GLY SEQRES 10 D 140 ILE PRO GLU LYS MET LYS LYS ASP PHE ARG ALA MET LYS SEQRES 11 D 140 ASP LEU ALA GLN GLN ILE ASN LEU SER PRO FORMUL 5 HOH *9(H2 O) HELIX 1 1 CYS A 389 VAL A 414 1 26 HELIX 2 2 TYR A 422 ASN A 424 5 3 HELIX 3 3 PHE A 452 TYR A 460 1 9 HELIX 4 4 LEU A 494 GLU A 496 5 3 HELIX 5 5 CYS B 389 VAL B 414 1 26 HELIX 6 6 TYR B 422 ASN B 424 5 3 HELIX 7 7 PHE B 452 TYR B 460 1 9 HELIX 8 8 CYS C 389 VAL C 414 1 26 HELIX 9 9 TYR C 422 ASN C 424 5 3 HELIX 10 10 PHE C 452 TYR C 460 1 9 HELIX 11 11 CYS D 389 VAL D 414 1 26 HELIX 12 12 TYR D 422 ASN D 424 5 3 HELIX 13 13 PHE D 452 TYR D 460 1 9 HELIX 14 14 LEU D 494 GLU D 496 5 3 SHEET 1 A 3 TYR A 427 ARG A 428 0 SHEET 2 A 3 ILE A 417 THR A 420 -1 N VAL A 418 O TYR A 427 SHEET 3 A 3 SER A 498 PHE A 499 -1 O PHE A 499 N ILE A 419 SHEET 1 B 3 ASP A 431 ASP A 433 0 SHEET 2 B 3 LEU A 471 HIS A 474 -1 O LEU A 471 N ASP A 433 SHEET 3 B 3 ILE A 491 LEU A 493 -1 O LEU A 493 N LEU A 472 SHEET 1 C 2 SER A 441 THR A 443 0 SHEET 2 C 2 GLU A 449 THR A 451 -1 O ILE A 450 N PHE A 442 SHEET 1 D 3 TYR B 427 ARG B 428 0 SHEET 2 D 3 ILE B 417 THR B 420 -1 N VAL B 418 O TYR B 427 SHEET 3 D 3 SER B 498 PHE B 499 -1 O PHE B 499 N ILE B 419 SHEET 1 E 3 ASP B 431 ASP B 433 0 SHEET 2 E 3 LEU B 471 HIS B 474 -1 O LEU B 471 N ASP B 433 SHEET 3 E 3 ILE B 491 LEU B 493 -1 O LEU B 493 N LEU B 472 SHEET 1 F 2 SER B 441 THR B 443 0 SHEET 2 F 2 GLU B 449 THR B 451 -1 O ILE B 450 N PHE B 442 SHEET 1 G 3 TYR C 427 ARG C 428 0 SHEET 2 G 3 ILE C 417 THR C 420 -1 N VAL C 418 O TYR C 427 SHEET 3 G 3 SER C 498 MET C 500 -1 O PHE C 499 N ILE C 419 SHEET 1 H 3 ASP C 431 ASP C 433 0 SHEET 2 H 3 LEU C 471 HIS C 474 -1 O LEU C 471 N ASP C 433 SHEET 3 H 3 ILE C 491 LEU C 493 -1 O LEU C 493 N LEU C 472 SHEET 1 I 2 SER C 441 THR C 443 0 SHEET 2 I 2 GLU C 449 THR C 451 -1 O ILE C 450 N PHE C 442 SHEET 1 J 3 TYR D 427 ARG D 428 0 SHEET 2 J 3 ILE D 417 THR D 420 -1 N VAL D 418 O TYR D 427 SHEET 3 J 3 SER D 498 PHE D 499 -1 O PHE D 499 N ILE D 419 SHEET 1 K 3 ASP D 431 ASP D 433 0 SHEET 2 K 3 LEU D 471 HIS D 474 -1 O LEU D 471 N ASP D 433 SHEET 3 K 3 ILE D 491 LEU D 493 -1 O LEU D 493 N LEU D 472 SHEET 1 L 2 SER D 441 THR D 443 0 SHEET 2 L 2 GLU D 449 THR D 451 -1 O ILE D 450 N PHE D 442 CRYST1 40.535 142.949 226.510 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024670 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006996 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004415 0.00000