HEADER HYDROLASE 04-AUG-10 3O9J TITLE INFLUENZA NA IN COMPLEX WITH COMPOUND 5 CAVEAT 3O9J RP6 A 1 HAS WRONG CHIRALITY AT ATOM C7 THERE ARE SEVERAL CAVEAT 2 3O9J INCORRECT PEPTIDE BONDS IN CHAIN A COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 81-467; COMPND 5 EC: 3.2.1.18 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/DUCK/UKRAINE/1/1963(H3N8) SOURCE 3 ); SOURCE 4 ORGANISM_TAXID: 385580; SOURCE 5 STRAIN: A/DUCK/UKRAINE/1/1963 H3N8 KEYWDS NEURAMINIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.J.RUSSELL,P.S.KERRY REVDAT 3 29-JUL-20 3O9J 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 22-APR-20 3O9J 1 CAVEAT COMPND REMARK SEQADV REVDAT 2 2 1 ATOM REVDAT 1 15-DEC-10 3O9J 0 JRNL AUTH S.RUDRAWAR,J.C.DYASON,M.A.RAMEIX-WELTI,F.J.ROSE,P.S.KERRY, JRNL AUTH 2 R.J.RUSSELL,S.VAN DER WERF,R.J.THOMSON,N.NAFFAKH, JRNL AUTH 3 M.VON ITZSTEIN JRNL TITL NOVEL SIALIC ACID DERIVATIVES LOCK OPEN THE 150-LOOP OF AN JRNL TITL 2 INFLUENZA A VIRUS GROUP-1 SIALIDASE. JRNL REF NAT COMMUN V. 1 113 2010 JRNL REFN ESSN 2041-1723 JRNL PMID 21081911 JRNL DOI 10.1038/NCOMMS1114 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.890 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 27534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.6468 - 4.3049 0.98 2833 127 0.2181 0.2323 REMARK 3 2 4.3049 - 3.4188 0.99 2812 169 0.1893 0.2405 REMARK 3 3 3.4188 - 2.9871 0.99 2806 143 0.1948 0.2883 REMARK 3 4 2.9871 - 2.7142 0.99 2822 130 0.1956 0.2867 REMARK 3 5 2.7142 - 2.5198 1.00 2811 153 0.1937 0.3024 REMARK 3 6 2.5198 - 2.3713 1.00 2806 165 0.2137 0.2608 REMARK 3 7 2.3713 - 2.2526 1.00 2806 161 0.2226 0.3487 REMARK 3 8 2.2526 - 2.1546 1.00 2774 160 0.2343 0.2953 REMARK 3 9 2.1546 - 2.0717 0.94 2666 135 0.2522 0.3648 REMARK 3 10 2.0717 - 2.0002 0.84 2393 122 0.2768 0.3721 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 63.69 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.34930 REMARK 3 B22 (A**2) : -9.34930 REMARK 3 B33 (A**2) : 18.69870 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 3127 REMARK 3 ANGLE : 1.825 4237 REMARK 3 CHIRALITY : 0.218 456 REMARK 3 PLANARITY : 0.010 546 REMARK 3 DIHEDRAL : 21.293 1155 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3O9J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000060835. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27534 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% MPD, PH 7, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.29000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.29000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.75000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.29000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.29000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.75000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 45.29000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 45.29000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 54.75000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 45.29000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 45.29000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 54.75000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 619 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 96 O GLY A 458 1.61 REMARK 500 O MET A 346 N GLY A 347 1.70 REMARK 500 O PRO A 328 OE1 GLN A 350 1.74 REMARK 500 O THR A 298 O GLY A 347 2.01 REMARK 500 ND2 ASN A 86 O HOH A 667 2.03 REMARK 500 N THR A 83 O HOH A 58 2.06 REMARK 500 CB THR A 298 O HOH A 40 2.12 REMARK 500 O HOH A 68 O HOH A 660 2.12 REMARK 500 NH2 ARG A 255 O HOH A 710 2.13 REMARK 500 N ASN A 87 O HOH A 708 2.13 REMARK 500 OE1 GLU A 380 NZ LYS A 399 2.18 REMARK 500 OE1 GLU A 443 CD1 LEU A 474 2.19 REMARK 500 NH1 ARG A 397 OE1 GLU A 462 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 572 O HOH A 585 4545 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 170 C GLN A 172 N 0.220 REMARK 500 PRO A 310 N PRO A 310 CA 0.132 REMARK 500 PRO A 310 CD PRO A 310 N -0.204 REMARK 500 GLN A 334 CB GLN A 334 CG 0.286 REMARK 500 MET A 346 C GLY A 347 N -0.187 REMARK 500 GLN A 350 C GLY A 351 N -0.145 REMARK 500 LEU A 421 C SER A 423 N 0.250 REMARK 500 LYS A 445 CB LYS A 445 CG 0.694 REMARK 500 LYS A 445 C THR A 446 N -0.181 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 310 N - CA - CB ANGL. DEV. = -7.8 DEGREES REMARK 500 MET A 346 CA - C - N ANGL. DEV. = 29.8 DEGREES REMARK 500 MET A 346 O - C - N ANGL. DEV. = -32.5 DEGREES REMARK 500 GLY A 347 C - N - CA ANGL. DEV. = 44.9 DEGREES REMARK 500 GLN A 350 O - C - N ANGL. DEV. = -12.0 DEGREES REMARK 500 ASP A 364 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 397 O - C - N ANGL. DEV. = -13.1 DEGREES REMARK 500 LEU A 421 O - C - N ANGL. DEV. = -11.8 DEGREES REMARK 500 LYS A 445 CA - CB - CG ANGL. DEV. = -30.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 111 -44.09 -136.79 REMARK 500 GLU A 119 74.35 44.06 REMARK 500 PRO A 126 2.24 -69.75 REMARK 500 ASN A 141 31.30 71.36 REMARK 500 THR A 148 14.13 -61.64 REMARK 500 ALA A 179 138.04 -171.77 REMARK 500 LYS A 202 60.08 -167.20 REMARK 500 THR A 227 -157.05 -140.78 REMARK 500 CYS A 232 -170.04 -67.65 REMARK 500 ASN A 249 -109.63 -117.24 REMARK 500 ARG A 250 -170.68 -24.74 REMARK 500 PHE A 272 55.31 -158.38 REMARK 500 TRP A 297 -68.56 -94.99 REMARK 500 LEU A 312 -2.97 111.42 REMARK 500 TYR A 352 -166.20 67.96 REMARK 500 THR A 391 30.52 -76.22 REMARK 500 SER A 409 -124.66 -127.42 REMARK 500 VAL A 459 135.88 70.42 REMARK 500 ASP A 460 34.92 -88.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 147 THR A 148 148.40 REMARK 500 PHE A 337 THR A 338 148.69 REMARK 500 MET A 346 GLY A 347 102.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE A 337 10.02 REMARK 500 MET A 346 24.50 REMARK 500 ARG A 397 12.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 486 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A 522 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A 560 DISTANCE = 8.15 ANGSTROMS REMARK 525 HOH A 564 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A 580 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH A 601 DISTANCE = 7.83 ANGSTROMS REMARK 525 HOH A 627 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A 632 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 712 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 716 DISTANCE = 7.55 ANGSTROMS REMARK 525 HOH A 717 DISTANCE = 6.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 995 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 67 O REMARK 620 2 ASP A 295 O 79.2 REMARK 620 3 GLY A 299 O 92.3 86.6 REMARK 620 4 ASP A 326 OD1 159.4 80.2 86.2 REMARK 620 5 TYR A 352 O 79.6 87.3 170.7 99.6 REMARK 620 N 1 2 3 4 DBREF 3O9J A 83 478 UNP Q07599 NRAM_I63A3 81 467 SEQADV 3O9J ASN A 296 UNP Q07599 GLY 293 CONFLICT SEQRES 1 A 387 THR TYR MET ASN ASN THR GLU ALA ILE CYS ASP ALA LYS SEQRES 2 A 387 GLY PHE ALA PRO PHE SER LYS ASP ASN GLY ILE ARG ILE SEQRES 3 A 387 GLY SER ARG GLY HIS ILE PHE VAL ILE ARG GLU PRO PHE SEQRES 4 A 387 VAL SER CYS SER PRO ILE GLU CYS ARG THR PHE PHE LEU SEQRES 5 A 387 THR GLN GLY SER LEU LEU ASN ASP LYS HIS SER ASN GLY SEQRES 6 A 387 THR VAL LYS ASP ARG SER PRO PHE ARG THR LEU MET SER SEQRES 7 A 387 VAL GLU VAL GLY GLN SER PRO ASN VAL TYR GLN ALA ARG SEQRES 8 A 387 PHE GLU ALA VAL ALA TRP SER ALA THR ALA CYS HIS ASP SEQRES 9 A 387 GLY LYS LYS TRP MET THR VAL GLY VAL THR GLY PRO ASP SEQRES 10 A 387 SER LYS ALA VAL ALA VAL ILE HIS TYR GLY GLY VAL PRO SEQRES 11 A 387 THR ASP VAL VAL ASN SER TRP ALA GLY ASP ILE LEU ARG SEQRES 12 A 387 THR GLN GLU SER SER CYS THR CYS ILE GLN GLY ASP CYS SEQRES 13 A 387 TYR TRP VAL MET THR ASP GLY PRO ALA ASN ARG GLN ALA SEQRES 14 A 387 GLN TYR ARG ILE TYR LYS ALA ASN GLN GLY ARG ILE ILE SEQRES 15 A 387 GLY GLN THR ASP ILE SER PHE ASN GLY GLY HIS ILE GLU SEQRES 16 A 387 GLU CYS SER CYS TYR PRO ASN ASP GLY LYS VAL GLU CYS SEQRES 17 A 387 VAL CYS ARG ASP ASN TRP THR GLY THR ASN ARG PRO VAL SEQRES 18 A 387 LEU VAL ILE SER PRO ASP LEU SER TYR ARG VAL GLY TYR SEQRES 19 A 387 LEU CYS ALA GLY ILE PRO SER ASP THR PRO ARG GLY GLU SEQRES 20 A 387 ASP THR GLN PHE THR GLY SER CYS THR SER PRO MET GLY SEQRES 21 A 387 ASN GLN GLY TYR GLY VAL LYS GLY PHE GLY PHE ARG GLN SEQRES 22 A 387 GLY THR ASP VAL TRP MET GLY ARG THR ILE SER ARG THR SEQRES 23 A 387 SER ARG SER GLY PHE GLU ILE LEU ARG ILE LYS ASN GLY SEQRES 24 A 387 TRP THR GLN THR SER LYS GLU GLN ILE ARG LYS GLN VAL SEQRES 25 A 387 VAL VAL ASP ASN LEU ASN TRP SER GLY TYR SER GLY SER SEQRES 26 A 387 PHE THR LEU PRO VAL GLU LEU SER GLY LYS ASP CYS LEU SEQRES 27 A 387 VAL PRO CYS PHE TRP VAL GLU MET ILE ARG GLY LYS PRO SEQRES 28 A 387 GLU GLU LYS THR ILE TRP THR SER SER SER SER ILE VAL SEQRES 29 A 387 MET CYS GLY VAL ASP TYR GLU VAL ALA ASP TRP SER TRP SEQRES 30 A 387 HIS ASP GLY ALA ILE LEU PRO PHE ASP ILE HET RP6 A 1 23 HET CA A 995 1 HET NDG A 479 15 HETNAM RP6 5-ACETAMIDO-2,6-ANHYDRO-3,5-DIDEOXY-3-PROP-2-EN-1-YL-D- HETNAM 2 RP6 GLYCERO-D-GALACTO-NON-2-ENONIC ACID HETNAM CA CALCIUM ION HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE FORMUL 2 RP6 C14 H21 N O8 FORMUL 3 CA CA 2+ FORMUL 4 NDG C8 H15 N O6 FORMUL 5 HOH *320(H2 O) HELIX 1 1 ASN A 104 GLY A 109 1 6 HELIX 2 2 ASP A 142 GLY A 147 5 6 HELIX 3 3 ASN A 168 ALA A 173 5 5 HELIX 4 4 PRO A 199 LYS A 202 5 4 HELIX 5 5 PRO A 418 GLY A 424 1 6 SHEET 1 A 4 ALA A 98 LYS A 102 0 SHEET 2 A 4 THR A 449 CYS A 457 -1 O VAL A 455 N PHE A 100 SHEET 3 A 4 VAL A 429 GLY A 439 -1 N PHE A 432 O MET A 456 SHEET 4 A 4 SER A 412 LEU A 417 -1 N PHE A 415 O CYS A 431 SHEET 1 B 4 PHE A 115 CYS A 124 0 SHEET 2 B 4 CYS A 129 LEU A 139 -1 O PHE A 132 N PHE A 121 SHEET 3 B 4 THR A 157 GLU A 162 -1 O VAL A 161 N THR A 131 SHEET 4 B 4 ARG A 174 VAL A 178 -1 O ALA A 177 N LEU A 158 SHEET 1 C 5 PRO A 213 ASN A 218 0 SHEET 2 C 5 VAL A 204 TYR A 209 -1 N ILE A 207 O THR A 214 SHEET 3 C 5 TRP A 191 THR A 197 -1 N THR A 193 O HIS A 208 SHEET 4 C 5 SER A 181 HIS A 186 -1 N CYS A 185 O MET A 192 SHEET 5 C 5 SER A 230 SER A 231 1 O SER A 230 N ALA A 184 SHEET 1 D 4 THR A 233 ILE A 235 0 SHEET 2 D 4 ASP A 238 ASP A 245 -1 O TYR A 240 N THR A 233 SHEET 3 D 4 GLN A 253 ASN A 260 -1 O ALA A 259 N CYS A 239 SHEET 4 D 4 ARG A 263 ASP A 269 -1 O GLY A 266 N LYS A 258 SHEET 1 E 4 GLU A 278 ASN A 285 0 SHEET 2 E 4 LYS A 288 ARG A 294 -1 O LYS A 288 N ASN A 285 SHEET 3 E 4 PRO A 303 ILE A 307 -1 O ILE A 307 N VAL A 289 SHEET 4 E 4 TYR A 314 TYR A 318 -1 O ARG A 315 N VAL A 306 SHEET 1 F 4 GLY A 358 GLN A 361 0 SHEET 2 F 4 ASP A 364 ARG A 369 -1 O ASP A 364 N GLN A 361 SHEET 3 F 4 SER A 377 ILE A 384 -1 O LEU A 382 N MET A 367 SHEET 4 F 4 GLN A 395 TRP A 408 -1 O VAL A 403 N PHE A 379 SSBOND 1 CYS A 92 CYS A 427 1555 1555 2.05 SSBOND 2 CYS A 124 CYS A 129 1555 1555 2.03 SSBOND 3 CYS A 185 CYS A 232 1555 1555 2.03 SSBOND 4 CYS A 234 CYS A 239 1555 1555 2.08 SSBOND 5 CYS A 280 CYS A 293 1555 1555 2.03 SSBOND 6 CYS A 282 CYS A 291 1555 1555 2.08 SSBOND 7 CYS A 320 CYS A 342 1555 1555 2.02 SSBOND 8 CYS A 431 CYS A 457 1555 1555 2.03 LINK O HOH A 67 CA CA A 995 1555 1555 2.42 LINK O ASP A 295 CA CA A 995 1555 1555 2.50 LINK O GLY A 299 CA CA A 995 1555 1555 2.47 LINK OD1 ASP A 326 CA CA A 995 1555 1555 2.57 LINK O TYR A 352 CA CA A 995 1555 1555 2.31 CISPEP 1 THR A 327 PRO A 328 0 4.99 CISPEP 2 LYS A 440 PRO A 441 0 -5.99 CISPEP 3 LEU A 474 PRO A 475 0 -7.62 CRYST1 90.580 90.580 109.500 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011040 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009132 0.00000