HEADER HYDROLASE 17-AUG-10 3OHO TITLE CATALYTIC DOMAIN OF STROMELYSIN-1 IN COMPLEX WITH N-HYDROXY-2-(4- TITLE 2 METHYLPHENYLSULFONAMIDO)ACETAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: STROMELYSIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 100-268); COMPND 5 SYNONYM: SL-1, MATRIX METALLOPROTEINASE-3, MMP-3, TRANSIN-1; COMPND 6 EC: 3.4.24.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MMP3, STMY1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21 (DE3)GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS MATRIXMETALLOPROTEINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KOWATZ,J.H.NAISMITH REVDAT 2 06-SEP-23 3OHO 1 REMARK LINK REVDAT 1 29-JUN-11 3OHO 0 JRNL AUTH T.KOWATZ,J.H.NAISMITH JRNL TITL NON-RESONANCE RAMAN DIFFERENCE SPECTROSCOPY AS A TOOL TO JRNL TITL 2 PROBE ENTHALPY-ENTROPY COMPENSATION AND THE INTERFACIAL JRNL TITL 3 MOBILITY MODEL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0079 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 5540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 276 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 354 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 22 REMARK 3 BIN FREE R VALUE : 0.2120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1271 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.73000 REMARK 3 B22 (A**2) : -2.12000 REMARK 3 B33 (A**2) : -1.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.328 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.266 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.340 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1356 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 892 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1818 ; 0.782 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2144 ; 0.757 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 156 ; 5.205 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;30.024 ;23.485 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 190 ;10.441 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ; 7.519 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 187 ; 0.046 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1488 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 292 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6830 -15.2660 1.1080 REMARK 3 T TENSOR REMARK 3 T11: 0.4342 T22: 0.4050 REMARK 3 T33: 0.4187 T12: -0.0174 REMARK 3 T13: -0.1454 T23: 0.0996 REMARK 3 L TENSOR REMARK 3 L11: 2.3852 L22: 9.9282 REMARK 3 L33: 3.2868 L12: 0.5243 REMARK 3 L13: -0.3692 L23: 1.1924 REMARK 3 S TENSOR REMARK 3 S11: 0.2031 S12: -0.1739 S13: -0.0649 REMARK 3 S21: 1.5716 S22: -0.1389 S23: -1.0764 REMARK 3 S31: 0.3701 S32: 0.3706 S33: -0.0642 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 192 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7380 -14.9990 -4.4870 REMARK 3 T TENSOR REMARK 3 T11: 0.2887 T22: 0.3697 REMARK 3 T33: 0.3627 T12: 0.0037 REMARK 3 T13: -0.0347 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 2.5982 L22: 6.3368 REMARK 3 L33: 5.7849 L12: -0.4037 REMARK 3 L13: -0.3707 L23: 1.7659 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.1208 S13: -0.1690 REMARK 3 S21: 0.5718 S22: -0.0015 S23: -0.6980 REMARK 3 S31: 0.3648 S32: 0.2936 S33: -0.0152 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 193 A 220 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8950 -14.3260 -2.2530 REMARK 3 T TENSOR REMARK 3 T11: 0.5124 T22: 0.5392 REMARK 3 T33: 1.1932 T12: 0.0947 REMARK 3 T13: -0.3947 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 1.9609 L22: 9.8252 REMARK 3 L33: 8.5845 L12: -3.2970 REMARK 3 L13: -2.5286 L23: -0.2051 REMARK 3 S TENSOR REMARK 3 S11: -0.1541 S12: -0.2605 S13: 0.7185 REMARK 3 S21: 0.9337 S22: 0.1131 S23: -2.5348 REMARK 3 S31: -0.0351 S32: 0.8422 S33: 0.0410 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 221 A 249 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4240 -17.3800 4.5200 REMARK 3 T TENSOR REMARK 3 T11: 2.3315 T22: 1.2547 REMARK 3 T33: 3.9532 T12: 0.8299 REMARK 3 T13: -1.9258 T23: -0.5883 REMARK 3 L TENSOR REMARK 3 L11: 23.2106 L22: 7.4055 REMARK 3 L33: 3.9054 L12: 2.1765 REMARK 3 L13: -6.4669 L23: -4.4867 REMARK 3 S TENSOR REMARK 3 S11: -0.5568 S12: -1.6977 S13: 3.3787 REMARK 3 S21: 1.0469 S22: -0.6418 S23: -3.5383 REMARK 3 S31: -0.3796 S32: 0.8696 S33: 1.1986 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 1 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1700 -19.5630 -17.1090 REMARK 3 T TENSOR REMARK 3 T11: 0.6200 T22: 0.4081 REMARK 3 T33: 0.9156 T12: 0.2384 REMARK 3 T13: 0.1843 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.3273 L22: 0.5613 REMARK 3 L33: 0.2067 L12: 0.4248 REMARK 3 L13: -0.0626 L23: -0.0972 REMARK 3 S TENSOR REMARK 3 S11: 0.0305 S12: 0.0389 S13: 0.2496 REMARK 3 S21: 0.0450 S22: 0.0149 S23: 0.3967 REMARK 3 S31: -0.1673 S32: 0.1356 S33: -0.0454 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 2 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2230 -9.0700 2.3170 REMARK 3 T TENSOR REMARK 3 T11: 0.5020 T22: 0.3785 REMARK 3 T33: 0.2495 T12: 0.0497 REMARK 3 T13: -0.0690 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.1100 L22: 0.3143 REMARK 3 L33: 0.1473 L12: -0.1740 REMARK 3 L13: 0.0947 L23: -0.1865 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: 0.0001 S13: 0.0856 REMARK 3 S21: 0.0764 S22: -0.0611 S23: -0.1771 REMARK 3 S31: 0.0453 S32: 0.1140 S33: 0.0827 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 3 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4430 -11.3050 -16.6840 REMARK 3 T TENSOR REMARK 3 T11: 0.3071 T22: 0.3663 REMARK 3 T33: 0.3958 T12: -0.0499 REMARK 3 T13: 0.0876 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.1574 L22: 0.0788 REMARK 3 L33: 0.0613 L12: 0.0961 REMARK 3 L13: 0.0432 L23: 0.0552 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.0120 S13: 0.1869 REMARK 3 S21: -0.0527 S22: 0.0000 S23: 0.0691 REMARK 3 S31: -0.0634 S32: 0.0058 S33: 0.0084 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 4 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8080 -7.6370 -8.5730 REMARK 3 T TENSOR REMARK 3 T11: 0.3360 T22: 0.3425 REMARK 3 T33: 0.3869 T12: -0.0234 REMARK 3 T13: -0.0292 T23: 0.0560 REMARK 3 L TENSOR REMARK 3 L11: 0.0268 L22: 0.0230 REMARK 3 L33: 0.0089 L12: -0.0242 REMARK 3 L13: 0.0029 L23: 0.0004 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: 0.0030 S13: 0.0571 REMARK 3 S21: -0.0068 S22: -0.0065 S23: -0.0475 REMARK 3 S31: -0.0271 S32: -0.0079 S33: 0.0076 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 5 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2980 -9.9990 -4.9260 REMARK 3 T TENSOR REMARK 3 T11: 0.3150 T22: 0.5317 REMARK 3 T33: 0.8608 T12: -0.0294 REMARK 3 T13: -0.0590 T23: 0.1379 REMARK 3 L TENSOR REMARK 3 L11: 0.0608 L22: 0.1988 REMARK 3 L33: 0.0418 L12: 0.0668 REMARK 3 L13: 0.0144 L23: -0.0003 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: -0.0407 S13: 0.0436 REMARK 3 S21: -0.0446 S22: 0.0257 S23: 0.1540 REMARK 3 S31: -0.0099 S32: 0.1033 S33: -0.0252 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 252 A 252 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2906 -11.9922 -8.2683 REMARK 3 T TENSOR REMARK 3 T11: 0.0469 T22: 0.2403 REMARK 3 T33: 0.2439 T12: -0.0618 REMARK 3 T13: -0.0060 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 0.5811 L22: 46.6217 REMARK 3 L33: 66.4786 L12: 0.2247 REMARK 3 L13: -6.1119 L23: 7.6144 REMARK 3 S TENSOR REMARK 3 S11: 0.1314 S12: -0.0848 S13: -0.1071 REMARK 3 S21: -0.2245 S22: -1.0807 S23: -0.6974 REMARK 3 S31: -1.5433 S32: 0.7689 S33: 0.9493 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3OHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000061128. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5809 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1B8Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M (NH4)2SO4, 0.1 M NA-CACODYLATE, REMARK 280 PH 6.5, 26% PEG 8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.43600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 23.43600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.24100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.52200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.24100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.52200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.43600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.24100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.52200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 23.43600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.24100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.52200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -23.43600 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 267 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 215 REMARK 465 GLU A 216 REMARK 465 SER A 225 REMARK 465 LEU A 226 REMARK 465 THR A 227 REMARK 465 ASP A 228 REMARK 465 LEU A 229 REMARK 465 THR A 230 REMARK 465 PRO A 250 REMARK 465 ASP A 251 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 89 61.65 39.44 REMARK 500 ARG A 149 -135.15 51.14 REMARK 500 HIS A 151 32.31 -149.25 REMARK 500 ASN A 162 -117.99 60.16 REMARK 500 ASP A 189 -150.88 -109.59 REMARK 500 PHE A 210 -169.45 -100.81 REMARK 500 LEU A 245 -53.80 -173.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 OD2 REMARK 620 2 ASP A 107 OD1 45.5 REMARK 620 3 ASP A 182 O 170.5 141.8 REMARK 620 4 ASP A 182 OD1 110.8 105.4 74.8 REMARK 620 5 GLU A 184 O 76.6 111.4 94.0 131.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 141 O REMARK 620 2 GLY A 173 O 170.0 REMARK 620 3 ASN A 175 O 99.5 89.2 REMARK 620 4 ASP A 177 OD1 86.2 97.0 101.8 REMARK 620 5 HOH A 257 O 85.3 92.3 74.3 169.9 REMARK 620 6 HOH A 264 O 97.0 73.1 153.6 99.8 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 3 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 158 OD1 REMARK 620 2 GLY A 159 O 97.9 REMARK 620 3 GLY A 161 O 93.9 94.9 REMARK 620 4 VAL A 163 O 92.4 163.8 96.8 REMARK 620 5 ASP A 181 OD2 98.2 74.2 164.7 92.1 REMARK 620 6 GLU A 184 OE2 175.4 79.1 89.9 89.8 77.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 4 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 151 NE2 REMARK 620 2 ASP A 153 OD2 102.7 REMARK 620 3 HIS A 166 NE2 121.2 105.9 REMARK 620 4 HIS A 179 ND1 108.2 100.8 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 5 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 201 NE2 REMARK 620 2 HIS A 205 NE2 92.5 REMARK 620 3 HIS A 211 NE2 105.5 102.1 REMARK 620 4 Z79 A 252 O5 102.4 87.2 150.0 REMARK 620 5 Z79 A 252 O4 117.3 149.4 77.6 80.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Z79 A 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 253 DBREF 3OHO A 83 251 UNP P08254 MMP3_HUMAN 100 268 SEQRES 1 A 169 PHE ARG THR PHE PRO GLY ILE PRO LYS TRP ARG LYS THR SEQRES 2 A 169 HIS LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP LEU SEQRES 3 A 169 PRO LYS ASP ALA VAL ASP SER ALA VAL GLU LYS ALA LEU SEQRES 4 A 169 LYS VAL TRP GLU GLU VAL THR PRO LEU THR PHE SER ARG SEQRES 5 A 169 LEU TYR GLU GLY GLU ALA ASP ILE MET ILE SER PHE ALA SEQRES 6 A 169 VAL ARG GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 A 169 GLY ASN VAL LEU ALA HIS ALA TYR ALA PRO GLY PRO GLY SEQRES 8 A 169 ILE ASN GLY ASP ALA HIS PHE ASP ASP ASP GLU GLN TRP SEQRES 9 A 169 THR LYS ASP THR THR GLY THR ASN LEU PHE LEU VAL ALA SEQRES 10 A 169 ALA HIS GLU ILE GLY HIS SER LEU GLY LEU PHE HIS SER SEQRES 11 A 169 ALA ASN THR GLU ALA LEU MET TYR PRO LEU TYR HIS SER SEQRES 12 A 169 LEU THR ASP LEU THR ARG PHE ARG LEU SER GLN ASP ASP SEQRES 13 A 169 ILE ASN GLY ILE GLN SER LEU TYR GLY PRO PRO PRO ASP HET CA A 1 1 HET CA A 2 1 HET CA A 3 1 HET ZN A 4 1 HET ZN A 5 1 HET Z79 A 252 17 HET SO4 A 253 5 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM Z79 N-HYDROXY-N~2~-[(4-METHOXYPHENYL)SULFONYL]GLYCINAMIDE HETNAM SO4 SULFATE ION FORMUL 2 CA 3(CA 2+) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 Z79 C9 H12 N2 O5 S FORMUL 8 SO4 O4 S 2- FORMUL 9 HOH *15(H2 O) HELIX 1 1 PRO A 109 GLU A 126 1 18 HELIX 2 2 LEU A 195 LEU A 207 1 13 HELIX 3 3 SER A 235 SER A 244 1 10 SHEET 1 A 2 ARG A 84 THR A 85 0 SHEET 2 A 2 LEU A 209 PHE A 210 -1 O PHE A 210 N ARG A 84 SHEET 1 B 5 THR A 131 ARG A 134 0 SHEET 2 B 5 HIS A 96 ILE A 101 1 N TYR A 99 O SER A 133 SHEET 3 B 5 ILE A 142 ALA A 147 1 O ILE A 144 N ARG A 100 SHEET 4 B 5 ALA A 178 ASP A 181 1 O PHE A 180 N ALA A 147 SHEET 5 B 5 ALA A 165 ALA A 167 -1 N HIS A 166 O HIS A 179 SHEET 1 C 2 TRP A 186 THR A 187 0 SHEET 2 C 2 THR A 193 ASN A 194 1 O THR A 193 N THR A 187 LINK CA CA A 1 OD2 ASP A 107 1555 1555 2.34 LINK CA CA A 1 OD1 ASP A 107 1555 1555 3.06 LINK CA CA A 1 O ASP A 182 1555 1555 2.33 LINK CA CA A 1 OD1 ASP A 182 1555 1555 2.34 LINK CA CA A 1 O GLU A 184 1555 1555 2.56 LINK CA CA A 2 O ASP A 141 1555 1555 2.34 LINK CA CA A 2 O GLY A 173 1555 1555 2.33 LINK CA CA A 2 O ASN A 175 1555 1555 2.34 LINK CA CA A 2 OD1 ASP A 177 1555 1555 2.33 LINK CA CA A 2 O HOH A 257 1555 1555 2.40 LINK CA CA A 2 O HOH A 264 1555 1555 2.62 LINK CA CA A 3 OD1 ASP A 158 1555 1555 2.34 LINK CA CA A 3 O GLY A 159 1555 1555 2.33 LINK CA CA A 3 O GLY A 161 1555 1555 2.33 LINK CA CA A 3 O VAL A 163 1555 1555 2.31 LINK CA CA A 3 OD2 ASP A 181 1555 1555 2.32 LINK CA CA A 3 OE2 GLU A 184 1555 1555 2.32 LINK ZN ZN A 4 NE2 HIS A 151 1555 1555 2.09 LINK ZN ZN A 4 OD2 ASP A 153 1555 1555 1.99 LINK ZN ZN A 4 NE2 HIS A 166 1555 1555 2.10 LINK ZN ZN A 4 ND1 HIS A 179 1555 1555 2.12 LINK ZN ZN A 5 NE2 HIS A 201 1555 1555 2.13 LINK ZN ZN A 5 NE2 HIS A 205 1555 1555 2.12 LINK ZN ZN A 5 NE2 HIS A 211 1555 1555 2.12 LINK ZN ZN A 5 O5 Z79 A 252 1555 1555 2.02 LINK ZN ZN A 5 O4 Z79 A 252 1555 1555 2.03 SITE 1 AC1 4 THR A 105 ASP A 107 ASP A 182 GLU A 184 SITE 1 AC2 6 ASP A 141 GLY A 173 ASN A 175 ASP A 177 SITE 2 AC2 6 HOH A 257 HOH A 264 SITE 1 AC3 6 ASP A 158 GLY A 159 GLY A 161 VAL A 163 SITE 2 AC3 6 ASP A 181 GLU A 184 SITE 1 AC4 4 HIS A 151 ASP A 153 HIS A 166 HIS A 179 SITE 1 AC5 4 HIS A 201 HIS A 205 HIS A 211 Z79 A 252 SITE 1 AC6 12 ZN A 5 ASN A 162 VAL A 163 LEU A 164 SITE 2 AC6 12 ALA A 165 LEU A 197 HIS A 201 GLU A 202 SITE 3 AC6 12 HIS A 205 HIS A 211 PRO A 221 TYR A 223 SITE 1 AC7 2 PRO A 109 LYS A 110 CRYST1 56.482 121.044 46.872 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017705 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008261 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021335 0.00000