data_3OIJ # _entry.id 3OIJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3OIJ pdb_00003oij 10.2210/pdb3oij/pdb NDB NA0688 ? ? RCSB RCSB061159 ? ? WWPDB D_1000061159 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3O7B 'Crystal structure of Archaeoglobus Fulgidus Nep1 bound to S-adenosylhomocysteine' unspecified PDB 3OII 'The same protein bound to S-adenosylhomocysteine' unspecified PDB 3OIN 'The same protein bound to S-adenosylhomocysteine and 1 molecule of cognate RNA' unspecified # _pdbx_database_status.entry_id 3OIJ _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-08-19 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Thomas, S.R.' 1 'LaRonde-LeBlanc, N.' 2 # _citation.id primary _citation.title 'Structural insight into the functional mechanism of Nep1/Emg1 N1-specific pseudouridine methyltransferase in ribosome biogenesis.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 39 _citation.page_first 2445 _citation.page_last 2457 _citation.year 2011 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21087996 _citation.pdbx_database_id_DOI 10.1093/nar/gkq1131 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Thomas, S.R.' 1 ? primary 'Keller, C.A.' 2 ? primary 'Szyk, A.' 3 ? primary 'Cannon, J.R.' 4 ? primary 'Laronde-Leblanc, N.A.' 5 ? # _cell.length_a 83.377 _cell.length_b 91.860 _cell.length_c 96.931 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3OIJ _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3OIJ _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Essential for mitotic growth 1' 27993.512 2 ? ? ? ? 2 polymer syn "5'-R(*GP*GP*GP*CP*UP*UP*CP*AP*AP*CP*GP*CP*CP*C)-3'" 4437.699 2 ? ? ? ? 3 non-polymer syn S-ADENOSYL-L-HOMOCYSTEINE 384.411 2 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 61 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Nucleolar essential protein 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GMVEDSRVRDALKGGDQKALPASLVPQAPPVLTSKDKITKRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKK MGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKL LKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACS KFCHGAEDAWNIL ; ;GMVEDSRVRDALKGGDQKALPASLVPQAPPVLTSKDKITKRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKK MGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKL LKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACS KFCHGAEDAWNIL ; A,B ? 2 polyribonucleotide no no GGGCUUCAACGCCC GGGCUUCAACGCCC C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MET n 1 3 VAL n 1 4 GLU n 1 5 ASP n 1 6 SER n 1 7 ARG n 1 8 VAL n 1 9 ARG n 1 10 ASP n 1 11 ALA n 1 12 LEU n 1 13 LYS n 1 14 GLY n 1 15 GLY n 1 16 ASP n 1 17 GLN n 1 18 LYS n 1 19 ALA n 1 20 LEU n 1 21 PRO n 1 22 ALA n 1 23 SER n 1 24 LEU n 1 25 VAL n 1 26 PRO n 1 27 GLN n 1 28 ALA n 1 29 PRO n 1 30 PRO n 1 31 VAL n 1 32 LEU n 1 33 THR n 1 34 SER n 1 35 LYS n 1 36 ASP n 1 37 LYS n 1 38 ILE n 1 39 THR n 1 40 LYS n 1 41 ARG n 1 42 MET n 1 43 ILE n 1 44 VAL n 1 45 VAL n 1 46 LEU n 1 47 ALA n 1 48 MET n 1 49 ALA n 1 50 SER n 1 51 LEU n 1 52 GLU n 1 53 THR n 1 54 HIS n 1 55 LYS n 1 56 ILE n 1 57 SER n 1 58 SER n 1 59 ASN n 1 60 GLY n 1 61 PRO n 1 62 GLY n 1 63 GLY n 1 64 ASP n 1 65 LYS n 1 66 TYR n 1 67 VAL n 1 68 LEU n 1 69 LEU n 1 70 ASN n 1 71 CYS n 1 72 ASP n 1 73 ASP n 1 74 HIS n 1 75 GLN n 1 76 GLY n 1 77 LEU n 1 78 LEU n 1 79 LYS n 1 80 LYS n 1 81 MET n 1 82 GLY n 1 83 ARG n 1 84 ASP n 1 85 ILE n 1 86 SER n 1 87 GLU n 1 88 ALA n 1 89 ARG n 1 90 PRO n 1 91 ASP n 1 92 ILE n 1 93 THR n 1 94 HIS n 1 95 GLN n 1 96 CYS n 1 97 LEU n 1 98 LEU n 1 99 THR n 1 100 LEU n 1 101 LEU n 1 102 ASP n 1 103 SER n 1 104 PRO n 1 105 ILE n 1 106 ASN n 1 107 LYS n 1 108 ALA n 1 109 GLY n 1 110 LYS n 1 111 LEU n 1 112 GLN n 1 113 VAL n 1 114 TYR n 1 115 ILE n 1 116 GLN n 1 117 THR n 1 118 SER n 1 119 ARG n 1 120 GLY n 1 121 ILE n 1 122 LEU n 1 123 ILE n 1 124 GLU n 1 125 VAL n 1 126 ASN n 1 127 PRO n 1 128 THR n 1 129 VAL n 1 130 ARG n 1 131 ILE n 1 132 PRO n 1 133 ARG n 1 134 THR n 1 135 PHE n 1 136 LYS n 1 137 ARG n 1 138 PHE n 1 139 SER n 1 140 GLY n 1 141 LEU n 1 142 MET n 1 143 VAL n 1 144 GLN n 1 145 LEU n 1 146 LEU n 1 147 HIS n 1 148 LYS n 1 149 LEU n 1 150 SER n 1 151 ILE n 1 152 ARG n 1 153 SER n 1 154 VAL n 1 155 ASN n 1 156 SER n 1 157 GLU n 1 158 GLU n 1 159 LYS n 1 160 LEU n 1 161 LEU n 1 162 LYS n 1 163 VAL n 1 164 ILE n 1 165 LYS n 1 166 ASN n 1 167 PRO n 1 168 ILE n 1 169 THR n 1 170 ASP n 1 171 HIS n 1 172 LEU n 1 173 PRO n 1 174 THR n 1 175 LYS n 1 176 CYS n 1 177 ARG n 1 178 LYS n 1 179 VAL n 1 180 THR n 1 181 LEU n 1 182 SER n 1 183 PHE n 1 184 ASP n 1 185 ALA n 1 186 PRO n 1 187 VAL n 1 188 ILE n 1 189 ARG n 1 190 VAL n 1 191 GLN n 1 192 ASP n 1 193 TYR n 1 194 ILE n 1 195 GLU n 1 196 LYS n 1 197 LEU n 1 198 ASP n 1 199 ASP n 1 200 ASP n 1 201 GLU n 1 202 SER n 1 203 ILE n 1 204 CYS n 1 205 VAL n 1 206 PHE n 1 207 VAL n 1 208 GLY n 1 209 ALA n 1 210 MET n 1 211 ALA n 1 212 ARG n 1 213 GLY n 1 214 LYS n 1 215 ASP n 1 216 ASN n 1 217 PHE n 1 218 ALA n 1 219 ASP n 1 220 GLU n 1 221 TYR n 1 222 VAL n 1 223 ASP n 1 224 GLU n 1 225 LYS n 1 226 VAL n 1 227 GLY n 1 228 LEU n 1 229 SER n 1 230 ASN n 1 231 TYR n 1 232 PRO n 1 233 LEU n 1 234 SER n 1 235 ALA n 1 236 SER n 1 237 VAL n 1 238 ALA n 1 239 CYS n 1 240 SER n 1 241 LYS n 1 242 PHE n 1 243 CYS n 1 244 HIS n 1 245 GLY n 1 246 ALA n 1 247 GLU n 1 248 ASP n 1 249 ALA n 1 250 TRP n 1 251 ASN n 1 252 ILE n 1 253 LEU n 2 1 G n 2 2 G n 2 3 G n 2 4 C n 2 5 U n 2 6 U n 2 7 C n 2 8 A n 2 9 A n 2 10 C n 2 11 G n 2 12 C n 2 13 C n 2 14 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'EMG1, NEP1, YLR186W, L9470.5' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pdest527 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Cognate RNA fragment synthesized to mimic natural RNA substrate' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP EMG1_YEAST Q06287 1 ;MVEDSRVRDALKGGDQKALPASLVPQAPPVLTSKDKITKRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKM GRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLL KVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSK FCHGAEDAWNIL ; 1 ? 2 PDB 3OIJ 3OIJ 2 GGGCUUCAACGCCC ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3OIJ A 2 ? 253 ? Q06287 1 ? 252 ? 1 252 2 1 3OIJ B 2 ? 253 ? Q06287 1 ? 252 ? 1 252 3 2 3OIJ C 1 ? 14 ? 3OIJ 1 ? 14 ? 1 14 4 2 3OIJ D 1 ? 14 ? 3OIJ 1 ? 14 ? 1 14 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3OIJ GLY A 1 ? UNP Q06287 ? ? 'expression tag' 0 1 2 3OIJ GLY B 1 ? UNP Q06287 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SAH 'L-peptide linking' n S-ADENOSYL-L-HOMOCYSTEINE ? 'C14 H20 N6 O5 S' 384.411 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3OIJ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.86 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 57.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '0.05M MES, 15mM MgS04, 7% PEG 4000, 20% glycerol, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-11-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Kohzu HLD8-24' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00931 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_wavelength_list 1.00931 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C # _reflns.entry_id 3OIJ _reflns.d_resolution_high 2.900 _reflns.d_resolution_low 30.000 _reflns.number_obs 16553 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_netI_over_sigmaI 21.2 _reflns.pdbx_chi_squared 0.824 _reflns.pdbx_redundancy 6.300 _reflns.percent_possible_obs 97.000 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 17064 _reflns.pdbx_Rsym_value 0.078 _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.900 3.000 ? ? ? 0.361 ? ? 0.492 2.900 ? 1265 76.500 ? 1 3.000 3.120 ? ? ? 0.293 ? ? 0.522 4.100 ? 1594 94.600 ? 2 3.120 3.270 ? ? ? 0.263 ? ? 0.568 5.700 ? 1656 98.700 ? 3 3.270 3.440 ? ? ? 0.189 ? ? 0.641 6.900 ? 1682 99.900 ? 4 3.440 3.650 ? ? ? 0.133 ? ? 0.743 7.200 ? 1690 100.000 ? 5 3.650 3.930 ? ? ? 0.097 ? ? 0.910 7.300 ? 1680 100.000 ? 6 3.930 4.330 ? ? ? 0.080 ? ? 0.961 7.200 ? 1694 100.000 ? 7 4.330 4.950 ? ? ? 0.072 ? ? 1.038 7.200 ? 1725 99.900 ? 8 4.950 6.230 ? ? ? 0.061 ? ? 0.856 7.000 ? 1731 100.000 ? 9 6.230 30.000 ? ? ? 0.049 ? ? 1.010 6.700 ? 1836 99.800 ? 10 # _refine.entry_id 3OIJ _refine.ls_d_res_high 3.0000 _refine.ls_d_res_low 29.8860 _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.1700 _refine.ls_number_reflns_obs 15321 _refine.ls_number_reflns_all 15321 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all 0.1901 _refine.ls_R_factor_obs 0.1901 _refine.ls_R_factor_R_work 0.1864 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2597 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.9700 _refine.ls_number_reflns_R_free 761 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 70.9897 _refine.solvent_model_param_bsol 21.2890 _refine.solvent_model_param_ksol 0.2740 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.4870 _refine.aniso_B[2][2] 1.0985 _refine.aniso_B[3][3] 0.3885 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.3500 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 2V3J _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7812 _refine.B_iso_max 169.320 _refine.B_iso_min 20.380 _refine.occupancy_max 1.000 _refine.occupancy_min 0.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3364 _refine_hist.pdbx_number_atoms_nucleic_acid 586 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.number_atoms_solvent 61 _refine_hist.number_atoms_total 4062 _refine_hist.d_res_high 3.0000 _refine_hist.d_res_low 29.8860 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 4125 0.008 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 5707 1.290 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 702 0.078 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 609 0.004 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 1647 18.517 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 3.0001 3.2314 5 96.0000 2780 . 0.2435 0.3749 . 142 . 2922 . . 'X-RAY DIFFRACTION' 3.2314 3.5562 5 100.0000 2866 . 0.2046 0.2981 . 175 . 3041 . . 'X-RAY DIFFRACTION' 3.5562 4.0696 5 100.0000 2918 . 0.1609 0.2256 . 132 . 3050 . . 'X-RAY DIFFRACTION' 4.0696 5.1231 5 100.0000 2952 . 0.1360 0.1994 . 144 . 3096 . . 'X-RAY DIFFRACTION' 5.1231 29.8871 5 100.0000 3044 . 0.2042 0.2695 . 168 . 3212 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3OIJ _struct.title 'Crystal structure of Saccharomyces Cerevisiae Nep1/Emg1 bound to S-adenosylhomocysteine and 2 molecules of cognate RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3OIJ _struct_keywords.text 'EMG1, scNEP1, SPOUT, ribosome biogenesis, methyltransferase, rRNA processing, RIBOSOMAL PROTEIN' _struct_keywords.pdbx_keywords 'RIBOSOMAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 70 ? GLN A 75 ? ASN A 69 GLN A 74 1 ? 6 HELX_P HELX_P2 2 ASP A 84 ? ALA A 88 ? ASP A 83 ALA A 87 5 ? 5 HELX_P HELX_P3 3 ARG A 89 ? ASP A 102 ? ARG A 88 ASP A 101 1 ? 14 HELX_P HELX_P4 4 SER A 103 ? ALA A 108 ? SER A 102 ALA A 107 1 ? 6 HELX_P HELX_P5 5 THR A 134 ? LEU A 149 ? THR A 133 LEU A 148 1 ? 16 HELX_P HELX_P6 6 PRO A 167 ? HIS A 171 ? PRO A 166 HIS A 170 5 ? 5 HELX_P HELX_P7 7 ARG A 189 ? LYS A 196 ? ARG A 188 LYS A 195 1 ? 8 HELX_P HELX_P8 8 LYS A 214 ? ASP A 219 ? LYS A 213 ASP A 218 5 ? 6 HELX_P HELX_P9 9 SER A 234 ? TRP A 250 ? SER A 233 TRP A 249 1 ? 17 HELX_P HELX_P10 10 HIS B 74 ? MET B 81 ? HIS B 73 MET B 80 1 ? 8 HELX_P HELX_P11 11 ARG B 89 ? ASP B 102 ? ARG B 88 ASP B 101 1 ? 14 HELX_P HELX_P12 12 SER B 103 ? ALA B 108 ? SER B 102 ALA B 107 1 ? 6 HELX_P HELX_P13 13 THR B 134 ? LEU B 149 ? THR B 133 LEU B 148 1 ? 16 HELX_P HELX_P14 14 PRO B 167 ? LEU B 172 ? PRO B 166 LEU B 171 1 ? 6 HELX_P HELX_P15 15 ARG B 189 ? LYS B 196 ? ARG B 188 LYS B 195 1 ? 8 HELX_P HELX_P16 16 SER B 234 ? TRP B 250 ? SER B 233 TRP B 249 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C G 1 N1 ? ? ? 1_555 C C 14 N3 ? ? C G 1 C C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C G 1 N2 ? ? ? 1_555 C C 14 O2 ? ? C G 1 C C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C G 1 O6 ? ? ? 1_555 C C 14 N4 ? ? C G 1 C C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C G 2 N1 ? ? ? 1_555 C C 13 N3 ? ? C G 2 C C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C G 2 N2 ? ? ? 1_555 C C 13 O2 ? ? C G 2 C C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C G 2 O6 ? ? ? 1_555 C C 13 N4 ? ? C G 2 C C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C G 3 N1 ? ? ? 1_555 C C 12 N3 ? ? C G 3 C C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C G 3 N2 ? ? ? 1_555 C C 12 O2 ? ? C G 3 C C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C G 3 O6 ? ? ? 1_555 C C 12 N4 ? ? C G 3 C C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C C 4 N3 ? ? ? 1_555 C G 11 N1 ? ? C C 4 C G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C C 4 N4 ? ? ? 1_555 C G 11 O6 ? ? C C 4 C G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C C 4 O2 ? ? ? 1_555 C G 11 N2 ? ? C C 4 C G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? D G 1 N1 ? ? ? 1_555 D C 14 N3 ? ? D G 1 D C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? D G 1 N2 ? ? ? 1_555 D C 14 O2 ? ? D G 1 D C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? D G 1 O6 ? ? ? 1_555 D C 14 N4 ? ? D G 1 D C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? D G 2 N1 ? ? ? 1_555 D C 13 N3 ? ? D G 2 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? D G 2 N2 ? ? ? 1_555 D C 13 O2 ? ? D G 2 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? D G 2 O6 ? ? ? 1_555 D C 13 N4 ? ? D G 2 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? D G 3 N1 ? ? ? 1_555 D C 12 N3 ? ? D G 3 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? D G 3 N2 ? ? ? 1_555 D C 12 O2 ? ? D G 3 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? D G 3 O6 ? ? ? 1_555 D C 12 N4 ? ? D G 3 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? D C 4 N3 ? ? ? 1_555 D G 11 N1 ? ? D C 4 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? D C 4 N4 ? ? ? 1_555 D G 11 O6 ? ? D C 4 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? D C 4 O2 ? ? ? 1_555 D G 11 N2 ? ? D C 4 D G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASN 166 A . ? ASN 165 A PRO 167 A ? PRO 166 A 1 1.41 2 ILE 252 A . ? ILE 251 A LEU 253 A ? LEU 252 A 1 -10.89 3 ASN 166 B . ? ASN 165 B PRO 167 B ? PRO 166 B 1 -0.69 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 2 ? C ? 8 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? parallel C 5 6 ? parallel C 6 7 ? parallel C 7 8 ? parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 150 ? ARG A 152 ? SER A 149 ARG A 151 A 2 LYS A 159 ? ILE A 164 ? LYS A 158 ILE A 163 A 3 LEU A 122 ? VAL A 125 ? LEU A 121 VAL A 124 A 4 LEU A 111 ? THR A 117 ? LEU A 110 THR A 116 A 5 MET A 42 ? ALA A 49 ? MET A 41 ALA A 48 A 6 SER A 202 ? GLY A 208 ? SER A 201 GLY A 207 A 7 CYS A 176 ? LEU A 181 ? CYS A 175 LEU A 180 A 8 GLU A 224 ? VAL A 226 ? GLU A 223 VAL A 225 B 1 THR A 53 ? HIS A 54 ? THR A 52 HIS A 53 B 2 VAL A 67 ? LEU A 68 ? VAL A 66 LEU A 67 C 1 SER B 150 ? ARG B 152 ? SER B 149 ARG B 151 C 2 LYS B 159 ? ILE B 164 ? LYS B 158 ILE B 163 C 3 LEU B 122 ? VAL B 125 ? LEU B 121 VAL B 124 C 4 LEU B 111 ? THR B 117 ? LEU B 110 THR B 116 C 5 MET B 42 ? ALA B 49 ? MET B 41 ALA B 48 C 6 SER B 202 ? GLY B 208 ? SER B 201 GLY B 207 C 7 CYS B 176 ? LEU B 181 ? CYS B 175 LEU B 180 C 8 GLU B 224 ? VAL B 226 ? GLU B 223 VAL B 225 D 1 THR B 53 ? HIS B 54 ? THR B 52 HIS B 53 D 2 VAL B 67 ? LEU B 68 ? VAL B 66 LEU B 67 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 151 ? N ILE A 150 O LEU A 161 ? O LEU A 160 A 2 3 O LYS A 162 ? O LYS A 161 N GLU A 124 ? N GLU A 123 A 3 4 O ILE A 123 ? O ILE A 122 N ILE A 115 ? N ILE A 114 A 4 5 O GLN A 116 ? O GLN A 115 N LEU A 46 ? N LEU A 45 A 5 6 N ILE A 43 ? N ILE A 42 O ILE A 203 ? O ILE A 202 A 6 7 O CYS A 204 ? O CYS A 203 N ARG A 177 ? N ARG A 176 A 7 8 N THR A 180 ? N THR A 179 O VAL A 226 ? O VAL A 225 B 1 2 N HIS A 54 ? N HIS A 53 O VAL A 67 ? O VAL A 66 C 1 2 N ILE B 151 ? N ILE B 150 O LEU B 160 ? O LEU B 159 C 2 3 O LYS B 162 ? O LYS B 161 N GLU B 124 ? N GLU B 123 C 3 4 O ILE B 123 ? O ILE B 122 N ILE B 115 ? N ILE B 114 C 4 5 O GLN B 116 ? O GLN B 115 N ALA B 49 ? N ALA B 48 C 5 6 N ILE B 43 ? N ILE B 42 O VAL B 205 ? O VAL B 204 C 6 7 O CYS B 204 ? O CYS B 203 N ARG B 177 ? N ARG B 176 C 7 8 N THR B 180 ? N THR B 179 O VAL B 226 ? O VAL B 225 D 1 2 N HIS B 54 ? N HIS B 53 O VAL B 67 ? O VAL B 66 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SAH 253 ? 12 'BINDING SITE FOR RESIDUE SAH A 253' AC2 Software B SAH 253 ? 14 'BINDING SITE FOR RESIDUE SAH B 253' AC3 Software D MG 15 ? 1 'BINDING SITE FOR RESIDUE MG D 15' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 LEU A 181 ? LEU A 180 . ? 1_555 ? 2 AC1 12 PHE A 183 ? PHE A 182 . ? 1_555 ? 3 AC1 12 GLY A 208 ? GLY A 207 . ? 1_555 ? 4 AC1 12 MET A 210 ? MET A 209 . ? 1_555 ? 5 AC1 12 ARG A 212 ? ARG A 211 . ? 1_555 ? 6 AC1 12 GLY A 213 ? GLY A 212 . ? 1_555 ? 7 AC1 12 GLY A 227 ? GLY A 226 . ? 1_555 ? 8 AC1 12 LEU A 228 ? LEU A 227 . ? 1_555 ? 9 AC1 12 SER A 229 ? SER A 228 . ? 1_555 ? 10 AC1 12 TYR A 231 ? TYR A 230 . ? 1_555 ? 11 AC1 12 PRO A 232 ? PRO A 231 . ? 1_555 ? 12 AC1 12 LEU A 233 ? LEU A 232 . ? 1_555 ? 13 AC2 14 LEU B 181 ? LEU B 180 . ? 1_555 ? 14 AC2 14 PHE B 183 ? PHE B 182 . ? 1_555 ? 15 AC2 14 GLY B 208 ? GLY B 207 . ? 1_555 ? 16 AC2 14 MET B 210 ? MET B 209 . ? 1_555 ? 17 AC2 14 ALA B 211 ? ALA B 210 . ? 1_555 ? 18 AC2 14 ARG B 212 ? ARG B 211 . ? 1_555 ? 19 AC2 14 GLY B 213 ? GLY B 212 . ? 1_555 ? 20 AC2 14 ASP B 215 ? ASP B 214 . ? 1_555 ? 21 AC2 14 PHE B 217 ? PHE B 216 . ? 1_555 ? 22 AC2 14 GLY B 227 ? GLY B 226 . ? 1_555 ? 23 AC2 14 LEU B 228 ? LEU B 227 . ? 1_555 ? 24 AC2 14 SER B 229 ? SER B 228 . ? 1_555 ? 25 AC2 14 TYR B 231 ? TYR B 230 . ? 1_555 ? 26 AC2 14 LEU B 233 ? LEU B 232 . ? 1_555 ? 27 AC3 1 G D 3 ? G D 3 . ? 1_555 ? # _atom_sites.entry_id 3OIJ _atom_sites.fract_transf_matrix[1][1] 0.011994 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010886 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010317 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MET 2 1 ? ? ? A . n A 1 3 VAL 3 2 ? ? ? A . n A 1 4 GLU 4 3 ? ? ? A . n A 1 5 ASP 5 4 ? ? ? A . n A 1 6 SER 6 5 ? ? ? A . n A 1 7 ARG 7 6 ? ? ? A . n A 1 8 VAL 8 7 ? ? ? A . n A 1 9 ARG 9 8 ? ? ? A . n A 1 10 ASP 10 9 ? ? ? A . n A 1 11 ALA 11 10 ? ? ? A . n A 1 12 LEU 12 11 ? ? ? A . n A 1 13 LYS 13 12 ? ? ? A . n A 1 14 GLY 14 13 ? ? ? A . n A 1 15 GLY 15 14 ? ? ? A . n A 1 16 ASP 16 15 ? ? ? A . n A 1 17 GLN 17 16 ? ? ? A . n A 1 18 LYS 18 17 ? ? ? A . n A 1 19 ALA 19 18 ? ? ? A . n A 1 20 LEU 20 19 ? ? ? A . n A 1 21 PRO 21 20 ? ? ? A . n A 1 22 ALA 22 21 ? ? ? A . n A 1 23 SER 23 22 ? ? ? A . n A 1 24 LEU 24 23 ? ? ? A . n A 1 25 VAL 25 24 ? ? ? A . n A 1 26 PRO 26 25 ? ? ? A . n A 1 27 GLN 27 26 ? ? ? A . n A 1 28 ALA 28 27 ? ? ? A . n A 1 29 PRO 29 28 28 PRO PRO A . n A 1 30 PRO 30 29 29 PRO PRO A . n A 1 31 VAL 31 30 30 VAL VAL A . n A 1 32 LEU 32 31 31 LEU LEU A . n A 1 33 THR 33 32 32 THR THR A . n A 1 34 SER 34 33 33 SER SER A . n A 1 35 LYS 35 34 34 LYS LYS A . n A 1 36 ASP 36 35 35 ASP ASP A . n A 1 37 LYS 37 36 36 LYS LYS A . n A 1 38 ILE 38 37 37 ILE ILE A . n A 1 39 THR 39 38 38 THR THR A . n A 1 40 LYS 40 39 39 LYS LYS A . n A 1 41 ARG 41 40 40 ARG ARG A . n A 1 42 MET 42 41 41 MET MET A . n A 1 43 ILE 43 42 42 ILE ILE A . n A 1 44 VAL 44 43 43 VAL VAL A . n A 1 45 VAL 45 44 44 VAL VAL A . n A 1 46 LEU 46 45 45 LEU LEU A . n A 1 47 ALA 47 46 46 ALA ALA A . n A 1 48 MET 48 47 47 MET MET A . n A 1 49 ALA 49 48 48 ALA ALA A . n A 1 50 SER 50 49 49 SER SER A . n A 1 51 LEU 51 50 50 LEU LEU A . n A 1 52 GLU 52 51 51 GLU GLU A . n A 1 53 THR 53 52 52 THR THR A . n A 1 54 HIS 54 53 53 HIS HIS A . n A 1 55 LYS 55 54 54 LYS LYS A . n A 1 56 ILE 56 55 55 ILE ILE A . n A 1 57 SER 57 56 ? ? ? A . n A 1 58 SER 58 57 ? ? ? A . n A 1 59 ASN 59 58 ? ? ? A . n A 1 60 GLY 60 59 ? ? ? A . n A 1 61 PRO 61 60 ? ? ? A . n A 1 62 GLY 62 61 ? ? ? A . n A 1 63 GLY 63 62 ? ? ? A . n A 1 64 ASP 64 63 ? ? ? A . n A 1 65 LYS 65 64 ? ? ? A . n A 1 66 TYR 66 65 65 TYR TYR A . n A 1 67 VAL 67 66 66 VAL VAL A . n A 1 68 LEU 68 67 67 LEU LEU A . n A 1 69 LEU 69 68 68 LEU LEU A . n A 1 70 ASN 70 69 69 ASN ASN A . n A 1 71 CYS 71 70 70 CYS CYS A . n A 1 72 ASP 72 71 71 ASP ASP A . n A 1 73 ASP 73 72 72 ASP ASP A . n A 1 74 HIS 74 73 73 HIS HIS A . n A 1 75 GLN 75 74 74 GLN GLN A . n A 1 76 GLY 76 75 75 GLY GLY A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 LYS 79 78 ? ? ? A . n A 1 80 LYS 80 79 ? ? ? A . n A 1 81 MET 81 80 ? ? ? A . n A 1 82 GLY 82 81 ? ? ? A . n A 1 83 ARG 83 82 ? ? ? A . n A 1 84 ASP 84 83 83 ASP ASP A . n A 1 85 ILE 85 84 84 ILE ILE A . n A 1 86 SER 86 85 85 SER SER A . n A 1 87 GLU 87 86 86 GLU GLU A . n A 1 88 ALA 88 87 87 ALA ALA A . n A 1 89 ARG 89 88 88 ARG ARG A . n A 1 90 PRO 90 89 89 PRO PRO A . n A 1 91 ASP 91 90 90 ASP ASP A . n A 1 92 ILE 92 91 91 ILE ILE A . n A 1 93 THR 93 92 92 THR THR A . n A 1 94 HIS 94 93 93 HIS HIS A . n A 1 95 GLN 95 94 94 GLN GLN A . n A 1 96 CYS 96 95 95 CYS CYS A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 LEU 98 97 97 LEU LEU A . n A 1 99 THR 99 98 98 THR THR A . n A 1 100 LEU 100 99 99 LEU LEU A . n A 1 101 LEU 101 100 100 LEU LEU A . n A 1 102 ASP 102 101 101 ASP ASP A . n A 1 103 SER 103 102 102 SER SER A . n A 1 104 PRO 104 103 103 PRO PRO A . n A 1 105 ILE 105 104 104 ILE ILE A . n A 1 106 ASN 106 105 105 ASN ASN A . n A 1 107 LYS 107 106 106 LYS LYS A . n A 1 108 ALA 108 107 107 ALA ALA A . n A 1 109 GLY 109 108 108 GLY GLY A . n A 1 110 LYS 110 109 109 LYS LYS A . n A 1 111 LEU 111 110 110 LEU LEU A . n A 1 112 GLN 112 111 111 GLN GLN A . n A 1 113 VAL 113 112 112 VAL VAL A . n A 1 114 TYR 114 113 113 TYR TYR A . n A 1 115 ILE 115 114 114 ILE ILE A . n A 1 116 GLN 116 115 115 GLN GLN A . n A 1 117 THR 117 116 116 THR THR A . n A 1 118 SER 118 117 117 SER SER A . n A 1 119 ARG 119 118 118 ARG ARG A . n A 1 120 GLY 120 119 119 GLY GLY A . n A 1 121 ILE 121 120 120 ILE ILE A . n A 1 122 LEU 122 121 121 LEU LEU A . n A 1 123 ILE 123 122 122 ILE ILE A . n A 1 124 GLU 124 123 123 GLU GLU A . n A 1 125 VAL 125 124 124 VAL VAL A . n A 1 126 ASN 126 125 125 ASN ASN A . n A 1 127 PRO 127 126 126 PRO PRO A . n A 1 128 THR 128 127 127 THR THR A . n A 1 129 VAL 129 128 128 VAL VAL A . n A 1 130 ARG 130 129 129 ARG ARG A . n A 1 131 ILE 131 130 130 ILE ILE A . n A 1 132 PRO 132 131 131 PRO PRO A . n A 1 133 ARG 133 132 132 ARG ARG A . n A 1 134 THR 134 133 133 THR THR A . n A 1 135 PHE 135 134 134 PHE PHE A . n A 1 136 LYS 136 135 135 LYS LYS A . n A 1 137 ARG 137 136 136 ARG ARG A . n A 1 138 PHE 138 137 137 PHE PHE A . n A 1 139 SER 139 138 138 SER SER A . n A 1 140 GLY 140 139 139 GLY GLY A . n A 1 141 LEU 141 140 140 LEU LEU A . n A 1 142 MET 142 141 141 MET MET A . n A 1 143 VAL 143 142 142 VAL VAL A . n A 1 144 GLN 144 143 143 GLN GLN A . n A 1 145 LEU 145 144 144 LEU LEU A . n A 1 146 LEU 146 145 145 LEU LEU A . n A 1 147 HIS 147 146 146 HIS HIS A . n A 1 148 LYS 148 147 147 LYS LYS A . n A 1 149 LEU 149 148 148 LEU LEU A . n A 1 150 SER 150 149 149 SER SER A . n A 1 151 ILE 151 150 150 ILE ILE A . n A 1 152 ARG 152 151 151 ARG ARG A . n A 1 153 SER 153 152 152 SER SER A . n A 1 154 VAL 154 153 153 VAL VAL A . n A 1 155 ASN 155 154 154 ASN ASN A . n A 1 156 SER 156 155 155 SER SER A . n A 1 157 GLU 157 156 156 GLU GLU A . n A 1 158 GLU 158 157 157 GLU GLU A . n A 1 159 LYS 159 158 158 LYS LYS A . n A 1 160 LEU 160 159 159 LEU LEU A . n A 1 161 LEU 161 160 160 LEU LEU A . n A 1 162 LYS 162 161 161 LYS LYS A . n A 1 163 VAL 163 162 162 VAL VAL A . n A 1 164 ILE 164 163 163 ILE ILE A . n A 1 165 LYS 165 164 164 LYS LYS A . n A 1 166 ASN 166 165 165 ASN ASN A . n A 1 167 PRO 167 166 166 PRO PRO A . n A 1 168 ILE 168 167 167 ILE ILE A . n A 1 169 THR 169 168 168 THR THR A . n A 1 170 ASP 170 169 169 ASP ASP A . n A 1 171 HIS 171 170 170 HIS HIS A . n A 1 172 LEU 172 171 171 LEU LEU A . n A 1 173 PRO 173 172 172 PRO PRO A . n A 1 174 THR 174 173 173 THR THR A . n A 1 175 LYS 175 174 174 LYS LYS A . n A 1 176 CYS 176 175 175 CYS CYS A . n A 1 177 ARG 177 176 176 ARG ARG A . n A 1 178 LYS 178 177 177 LYS LYS A . n A 1 179 VAL 179 178 178 VAL VAL A . n A 1 180 THR 180 179 179 THR THR A . n A 1 181 LEU 181 180 180 LEU LEU A . n A 1 182 SER 182 181 181 SER SER A . n A 1 183 PHE 183 182 182 PHE PHE A . n A 1 184 ASP 184 183 183 ASP ASP A . n A 1 185 ALA 185 184 184 ALA ALA A . n A 1 186 PRO 186 185 185 PRO PRO A . n A 1 187 VAL 187 186 186 VAL VAL A . n A 1 188 ILE 188 187 187 ILE ILE A . n A 1 189 ARG 189 188 188 ARG ARG A . n A 1 190 VAL 190 189 189 VAL VAL A . n A 1 191 GLN 191 190 190 GLN GLN A . n A 1 192 ASP 192 191 191 ASP ASP A . n A 1 193 TYR 193 192 192 TYR TYR A . n A 1 194 ILE 194 193 193 ILE ILE A . n A 1 195 GLU 195 194 194 GLU GLU A . n A 1 196 LYS 196 195 195 LYS LYS A . n A 1 197 LEU 197 196 196 LEU LEU A . n A 1 198 ASP 198 197 197 ASP ASP A . n A 1 199 ASP 199 198 198 ASP ASP A . n A 1 200 ASP 200 199 199 ASP ASP A . n A 1 201 GLU 201 200 200 GLU GLU A . n A 1 202 SER 202 201 201 SER SER A . n A 1 203 ILE 203 202 202 ILE ILE A . n A 1 204 CYS 204 203 203 CYS CYS A . n A 1 205 VAL 205 204 204 VAL VAL A . n A 1 206 PHE 206 205 205 PHE PHE A . n A 1 207 VAL 207 206 206 VAL VAL A . n A 1 208 GLY 208 207 207 GLY GLY A . n A 1 209 ALA 209 208 208 ALA ALA A . n A 1 210 MET 210 209 209 MET MET A . n A 1 211 ALA 211 210 210 ALA ALA A . n A 1 212 ARG 212 211 211 ARG ARG A . n A 1 213 GLY 213 212 212 GLY GLY A . n A 1 214 LYS 214 213 213 LYS LYS A . n A 1 215 ASP 215 214 214 ASP ASP A . n A 1 216 ASN 216 215 215 ASN ASN A . n A 1 217 PHE 217 216 216 PHE PHE A . n A 1 218 ALA 218 217 217 ALA ALA A . n A 1 219 ASP 219 218 218 ASP ASP A . n A 1 220 GLU 220 219 219 GLU GLU A . n A 1 221 TYR 221 220 220 TYR TYR A . n A 1 222 VAL 222 221 221 VAL VAL A . n A 1 223 ASP 223 222 222 ASP ASP A . n A 1 224 GLU 224 223 223 GLU GLU A . n A 1 225 LYS 225 224 224 LYS LYS A . n A 1 226 VAL 226 225 225 VAL VAL A . n A 1 227 GLY 227 226 226 GLY GLY A . n A 1 228 LEU 228 227 227 LEU LEU A . n A 1 229 SER 229 228 228 SER SER A . n A 1 230 ASN 230 229 229 ASN ASN A . n A 1 231 TYR 231 230 230 TYR TYR A . n A 1 232 PRO 232 231 231 PRO PRO A . n A 1 233 LEU 233 232 232 LEU LEU A . n A 1 234 SER 234 233 233 SER SER A . n A 1 235 ALA 235 234 234 ALA ALA A . n A 1 236 SER 236 235 235 SER SER A . n A 1 237 VAL 237 236 236 VAL VAL A . n A 1 238 ALA 238 237 237 ALA ALA A . n A 1 239 CYS 239 238 238 CYS CYS A . n A 1 240 SER 240 239 239 SER SER A . n A 1 241 LYS 241 240 240 LYS LYS A . n A 1 242 PHE 242 241 241 PHE PHE A . n A 1 243 CYS 243 242 242 CYS CYS A . n A 1 244 HIS 244 243 243 HIS HIS A . n A 1 245 GLY 245 244 244 GLY GLY A . n A 1 246 ALA 246 245 245 ALA ALA A . n A 1 247 GLU 247 246 246 GLU GLU A . n A 1 248 ASP 248 247 247 ASP ASP A . n A 1 249 ALA 249 248 248 ALA ALA A . n A 1 250 TRP 250 249 249 TRP TRP A . n A 1 251 ASN 251 250 250 ASN ASN A . n A 1 252 ILE 252 251 251 ILE ILE A . n A 1 253 LEU 253 252 252 LEU LEU A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 MET 2 1 ? ? ? B . n B 1 3 VAL 3 2 ? ? ? B . n B 1 4 GLU 4 3 ? ? ? B . n B 1 5 ASP 5 4 ? ? ? B . n B 1 6 SER 6 5 ? ? ? B . n B 1 7 ARG 7 6 ? ? ? B . n B 1 8 VAL 8 7 ? ? ? B . n B 1 9 ARG 9 8 ? ? ? B . n B 1 10 ASP 10 9 ? ? ? B . n B 1 11 ALA 11 10 ? ? ? B . n B 1 12 LEU 12 11 ? ? ? B . n B 1 13 LYS 13 12 ? ? ? B . n B 1 14 GLY 14 13 ? ? ? B . n B 1 15 GLY 15 14 ? ? ? B . n B 1 16 ASP 16 15 ? ? ? B . n B 1 17 GLN 17 16 ? ? ? B . n B 1 18 LYS 18 17 ? ? ? B . n B 1 19 ALA 19 18 ? ? ? B . n B 1 20 LEU 20 19 ? ? ? B . n B 1 21 PRO 21 20 ? ? ? B . n B 1 22 ALA 22 21 ? ? ? B . n B 1 23 SER 23 22 ? ? ? B . n B 1 24 LEU 24 23 ? ? ? B . n B 1 25 VAL 25 24 ? ? ? B . n B 1 26 PRO 26 25 ? ? ? B . n B 1 27 GLN 27 26 ? ? ? B . n B 1 28 ALA 28 27 ? ? ? B . n B 1 29 PRO 29 28 28 PRO PRO B . n B 1 30 PRO 30 29 29 PRO PRO B . n B 1 31 VAL 31 30 30 VAL VAL B . n B 1 32 LEU 32 31 31 LEU LEU B . n B 1 33 THR 33 32 32 THR THR B . n B 1 34 SER 34 33 33 SER SER B . n B 1 35 LYS 35 34 34 LYS LYS B . n B 1 36 ASP 36 35 35 ASP ASP B . n B 1 37 LYS 37 36 36 LYS LYS B . n B 1 38 ILE 38 37 37 ILE ILE B . n B 1 39 THR 39 38 38 THR THR B . n B 1 40 LYS 40 39 39 LYS LYS B . n B 1 41 ARG 41 40 40 ARG ARG B . n B 1 42 MET 42 41 41 MET MET B . n B 1 43 ILE 43 42 42 ILE ILE B . n B 1 44 VAL 44 43 43 VAL VAL B . n B 1 45 VAL 45 44 44 VAL VAL B . n B 1 46 LEU 46 45 45 LEU LEU B . n B 1 47 ALA 47 46 46 ALA ALA B . n B 1 48 MET 48 47 47 MET MET B . n B 1 49 ALA 49 48 48 ALA ALA B . n B 1 50 SER 50 49 49 SER SER B . n B 1 51 LEU 51 50 50 LEU LEU B . n B 1 52 GLU 52 51 51 GLU GLU B . n B 1 53 THR 53 52 52 THR THR B . n B 1 54 HIS 54 53 53 HIS HIS B . n B 1 55 LYS 55 54 54 LYS LYS B . n B 1 56 ILE 56 55 55 ILE ILE B . n B 1 57 SER 57 56 ? ? ? B . n B 1 58 SER 58 57 ? ? ? B . n B 1 59 ASN 59 58 ? ? ? B . n B 1 60 GLY 60 59 ? ? ? B . n B 1 61 PRO 61 60 ? ? ? B . n B 1 62 GLY 62 61 ? ? ? B . n B 1 63 GLY 63 62 ? ? ? B . n B 1 64 ASP 64 63 63 ASP ASP B . n B 1 65 LYS 65 64 64 LYS LYS B . n B 1 66 TYR 66 65 65 TYR TYR B . n B 1 67 VAL 67 66 66 VAL VAL B . n B 1 68 LEU 68 67 67 LEU LEU B . n B 1 69 LEU 69 68 68 LEU LEU B . n B 1 70 ASN 70 69 69 ASN ASN B . n B 1 71 CYS 71 70 70 CYS CYS B . n B 1 72 ASP 72 71 71 ASP ASP B . n B 1 73 ASP 73 72 72 ASP ASP B . n B 1 74 HIS 74 73 73 HIS HIS B . n B 1 75 GLN 75 74 74 GLN GLN B . n B 1 76 GLY 76 75 75 GLY GLY B . n B 1 77 LEU 77 76 76 LEU LEU B . n B 1 78 LEU 78 77 77 LEU LEU B . n B 1 79 LYS 79 78 78 LYS LYS B . n B 1 80 LYS 80 79 79 LYS LYS B . n B 1 81 MET 81 80 80 MET MET B . n B 1 82 GLY 82 81 81 GLY GLY B . n B 1 83 ARG 83 82 82 ARG ARG B . n B 1 84 ASP 84 83 83 ASP ASP B . n B 1 85 ILE 85 84 84 ILE ILE B . n B 1 86 SER 86 85 85 SER SER B . n B 1 87 GLU 87 86 86 GLU GLU B . n B 1 88 ALA 88 87 87 ALA ALA B . n B 1 89 ARG 89 88 88 ARG ARG B . n B 1 90 PRO 90 89 89 PRO PRO B . n B 1 91 ASP 91 90 90 ASP ASP B . n B 1 92 ILE 92 91 91 ILE ILE B . n B 1 93 THR 93 92 92 THR THR B . n B 1 94 HIS 94 93 93 HIS HIS B . n B 1 95 GLN 95 94 94 GLN GLN B . n B 1 96 CYS 96 95 95 CYS CYS B . n B 1 97 LEU 97 96 96 LEU LEU B . n B 1 98 LEU 98 97 97 LEU LEU B . n B 1 99 THR 99 98 98 THR THR B . n B 1 100 LEU 100 99 99 LEU LEU B . n B 1 101 LEU 101 100 100 LEU LEU B . n B 1 102 ASP 102 101 101 ASP ASP B . n B 1 103 SER 103 102 102 SER SER B . n B 1 104 PRO 104 103 103 PRO PRO B . n B 1 105 ILE 105 104 104 ILE ILE B . n B 1 106 ASN 106 105 105 ASN ASN B . n B 1 107 LYS 107 106 106 LYS LYS B . n B 1 108 ALA 108 107 107 ALA ALA B . n B 1 109 GLY 109 108 108 GLY GLY B . n B 1 110 LYS 110 109 109 LYS LYS B . n B 1 111 LEU 111 110 110 LEU LEU B . n B 1 112 GLN 112 111 111 GLN GLN B . n B 1 113 VAL 113 112 112 VAL VAL B . n B 1 114 TYR 114 113 113 TYR TYR B . n B 1 115 ILE 115 114 114 ILE ILE B . n B 1 116 GLN 116 115 115 GLN GLN B . n B 1 117 THR 117 116 116 THR THR B . n B 1 118 SER 118 117 117 SER SER B . n B 1 119 ARG 119 118 118 ARG ARG B . n B 1 120 GLY 120 119 119 GLY GLY B . n B 1 121 ILE 121 120 120 ILE ILE B . n B 1 122 LEU 122 121 121 LEU LEU B . n B 1 123 ILE 123 122 122 ILE ILE B . n B 1 124 GLU 124 123 123 GLU GLU B . n B 1 125 VAL 125 124 124 VAL VAL B . n B 1 126 ASN 126 125 125 ASN ASN B . n B 1 127 PRO 127 126 126 PRO PRO B . n B 1 128 THR 128 127 127 THR THR B . n B 1 129 VAL 129 128 128 VAL VAL B . n B 1 130 ARG 130 129 129 ARG ARG B . n B 1 131 ILE 131 130 130 ILE ILE B . n B 1 132 PRO 132 131 131 PRO PRO B . n B 1 133 ARG 133 132 132 ARG ARG B . n B 1 134 THR 134 133 133 THR THR B . n B 1 135 PHE 135 134 134 PHE PHE B . n B 1 136 LYS 136 135 135 LYS LYS B . n B 1 137 ARG 137 136 136 ARG ARG B . n B 1 138 PHE 138 137 137 PHE PHE B . n B 1 139 SER 139 138 138 SER SER B . n B 1 140 GLY 140 139 139 GLY GLY B . n B 1 141 LEU 141 140 140 LEU LEU B . n B 1 142 MET 142 141 141 MET MET B . n B 1 143 VAL 143 142 142 VAL VAL B . n B 1 144 GLN 144 143 143 GLN GLN B . n B 1 145 LEU 145 144 144 LEU LEU B . n B 1 146 LEU 146 145 145 LEU LEU B . n B 1 147 HIS 147 146 146 HIS HIS B . n B 1 148 LYS 148 147 147 LYS LYS B . n B 1 149 LEU 149 148 148 LEU LEU B . n B 1 150 SER 150 149 149 SER SER B . n B 1 151 ILE 151 150 150 ILE ILE B . n B 1 152 ARG 152 151 151 ARG ARG B . n B 1 153 SER 153 152 152 SER SER B . n B 1 154 VAL 154 153 153 VAL VAL B . n B 1 155 ASN 155 154 154 ASN ASN B . n B 1 156 SER 156 155 155 SER SER B . n B 1 157 GLU 157 156 156 GLU GLU B . n B 1 158 GLU 158 157 157 GLU GLU B . n B 1 159 LYS 159 158 158 LYS LYS B . n B 1 160 LEU 160 159 159 LEU LEU B . n B 1 161 LEU 161 160 160 LEU LEU B . n B 1 162 LYS 162 161 161 LYS LYS B . n B 1 163 VAL 163 162 162 VAL VAL B . n B 1 164 ILE 164 163 163 ILE ILE B . n B 1 165 LYS 165 164 164 LYS LYS B . n B 1 166 ASN 166 165 165 ASN ASN B . n B 1 167 PRO 167 166 166 PRO PRO B . n B 1 168 ILE 168 167 167 ILE ILE B . n B 1 169 THR 169 168 168 THR THR B . n B 1 170 ASP 170 169 169 ASP ASP B . n B 1 171 HIS 171 170 170 HIS HIS B . n B 1 172 LEU 172 171 171 LEU LEU B . n B 1 173 PRO 173 172 172 PRO PRO B . n B 1 174 THR 174 173 173 THR THR B . n B 1 175 LYS 175 174 174 LYS LYS B . n B 1 176 CYS 176 175 175 CYS CYS B . n B 1 177 ARG 177 176 176 ARG ARG B . n B 1 178 LYS 178 177 177 LYS LYS B . n B 1 179 VAL 179 178 178 VAL VAL B . n B 1 180 THR 180 179 179 THR THR B . n B 1 181 LEU 181 180 180 LEU LEU B . n B 1 182 SER 182 181 181 SER SER B . n B 1 183 PHE 183 182 182 PHE PHE B . n B 1 184 ASP 184 183 183 ASP ASP B . n B 1 185 ALA 185 184 184 ALA ALA B . n B 1 186 PRO 186 185 185 PRO PRO B . n B 1 187 VAL 187 186 186 VAL VAL B . n B 1 188 ILE 188 187 187 ILE ILE B . n B 1 189 ARG 189 188 188 ARG ARG B . n B 1 190 VAL 190 189 189 VAL VAL B . n B 1 191 GLN 191 190 190 GLN GLN B . n B 1 192 ASP 192 191 191 ASP ASP B . n B 1 193 TYR 193 192 192 TYR TYR B . n B 1 194 ILE 194 193 193 ILE ILE B . n B 1 195 GLU 195 194 194 GLU GLU B . n B 1 196 LYS 196 195 195 LYS LYS B . n B 1 197 LEU 197 196 196 LEU LEU B . n B 1 198 ASP 198 197 197 ASP ASP B . n B 1 199 ASP 199 198 198 ASP ASP B . n B 1 200 ASP 200 199 199 ASP ASP B . n B 1 201 GLU 201 200 200 GLU GLU B . n B 1 202 SER 202 201 201 SER SER B . n B 1 203 ILE 203 202 202 ILE ILE B . n B 1 204 CYS 204 203 203 CYS CYS B . n B 1 205 VAL 205 204 204 VAL VAL B . n B 1 206 PHE 206 205 205 PHE PHE B . n B 1 207 VAL 207 206 206 VAL VAL B . n B 1 208 GLY 208 207 207 GLY GLY B . n B 1 209 ALA 209 208 208 ALA ALA B . n B 1 210 MET 210 209 209 MET MET B . n B 1 211 ALA 211 210 210 ALA ALA B . n B 1 212 ARG 212 211 211 ARG ARG B . n B 1 213 GLY 213 212 212 GLY GLY B . n B 1 214 LYS 214 213 213 LYS LYS B . n B 1 215 ASP 215 214 214 ASP ASP B . n B 1 216 ASN 216 215 215 ASN ASN B . n B 1 217 PHE 217 216 216 PHE PHE B . n B 1 218 ALA 218 217 217 ALA ALA B . n B 1 219 ASP 219 218 218 ASP ASP B . n B 1 220 GLU 220 219 219 GLU GLU B . n B 1 221 TYR 221 220 220 TYR TYR B . n B 1 222 VAL 222 221 221 VAL VAL B . n B 1 223 ASP 223 222 222 ASP ASP B . n B 1 224 GLU 224 223 223 GLU GLU B . n B 1 225 LYS 225 224 224 LYS LYS B . n B 1 226 VAL 226 225 225 VAL VAL B . n B 1 227 GLY 227 226 226 GLY GLY B . n B 1 228 LEU 228 227 227 LEU LEU B . n B 1 229 SER 229 228 228 SER SER B . n B 1 230 ASN 230 229 229 ASN ASN B . n B 1 231 TYR 231 230 230 TYR TYR B . n B 1 232 PRO 232 231 231 PRO PRO B . n B 1 233 LEU 233 232 232 LEU LEU B . n B 1 234 SER 234 233 233 SER SER B . n B 1 235 ALA 235 234 234 ALA ALA B . n B 1 236 SER 236 235 235 SER SER B . n B 1 237 VAL 237 236 236 VAL VAL B . n B 1 238 ALA 238 237 237 ALA ALA B . n B 1 239 CYS 239 238 238 CYS CYS B . n B 1 240 SER 240 239 239 SER SER B . n B 1 241 LYS 241 240 240 LYS LYS B . n B 1 242 PHE 242 241 241 PHE PHE B . n B 1 243 CYS 243 242 242 CYS CYS B . n B 1 244 HIS 244 243 243 HIS HIS B . n B 1 245 GLY 245 244 244 GLY GLY B . n B 1 246 ALA 246 245 245 ALA ALA B . n B 1 247 GLU 247 246 246 GLU GLU B . n B 1 248 ASP 248 247 247 ASP ASP B . n B 1 249 ALA 249 248 248 ALA ALA B . n B 1 250 TRP 250 249 249 TRP TRP B . n B 1 251 ASN 251 250 250 ASN ASN B . n B 1 252 ILE 252 251 251 ILE ILE B . n B 1 253 LEU 253 252 252 LEU LEU B . n C 2 1 G 1 1 1 G G C . n C 2 2 G 2 2 2 G G C . n C 2 3 G 3 3 3 G G C . n C 2 4 C 4 4 4 C C C . n C 2 5 U 5 5 5 U U C . n C 2 6 U 6 6 6 U U C . n C 2 7 C 7 7 7 C C C . n C 2 8 A 8 8 8 A A C . n C 2 9 A 9 9 9 A A C . n C 2 10 C 10 10 10 C C C . n C 2 11 G 11 11 11 G G C . n C 2 12 C 12 12 12 C C C . n C 2 13 C 13 13 13 C C C . n C 2 14 C 14 14 14 C C C . n D 2 1 G 1 1 1 G G D . n D 2 2 G 2 2 2 G G D . n D 2 3 G 3 3 3 G G D . n D 2 4 C 4 4 4 C C D . n D 2 5 U 5 5 5 U U D . n D 2 6 U 6 6 6 U U D . n D 2 7 C 7 7 7 C C D . n D 2 8 A 8 8 8 A A D . n D 2 9 A 9 9 9 A A D . n D 2 10 C 10 10 10 C C D . n D 2 11 G 11 11 11 G G D . n D 2 12 C 12 12 12 C C D . n D 2 13 C 13 13 13 C C D . n D 2 14 C 14 14 14 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SAH 1 253 2 SAH SAH A . F 3 SAH 1 253 1 SAH SAH B . G 4 MG 1 15 1 MG MG D . H 5 HOH 1 254 1 HOH HOH A . H 5 HOH 2 255 3 HOH HOH A . H 5 HOH 3 256 11 HOH HOH A . H 5 HOH 4 257 15 HOH HOH A . H 5 HOH 5 258 20 HOH HOH A . H 5 HOH 6 259 25 HOH HOH A . H 5 HOH 7 260 26 HOH HOH A . H 5 HOH 8 261 27 HOH HOH A . H 5 HOH 9 262 29 HOH HOH A . H 5 HOH 10 263 31 HOH HOH A . H 5 HOH 11 264 32 HOH HOH A . H 5 HOH 12 265 33 HOH HOH A . H 5 HOH 13 266 35 HOH HOH A . H 5 HOH 14 267 37 HOH HOH A . H 5 HOH 15 268 39 HOH HOH A . H 5 HOH 16 269 40 HOH HOH A . H 5 HOH 17 270 41 HOH HOH A . H 5 HOH 18 271 44 HOH HOH A . H 5 HOH 19 272 46 HOH HOH A . H 5 HOH 20 273 48 HOH HOH A . H 5 HOH 21 274 54 HOH HOH A . H 5 HOH 22 276 58 HOH HOH A . H 5 HOH 23 277 63 HOH HOH A . H 5 HOH 24 278 64 HOH HOH A . I 5 HOH 1 254 2 HOH HOH B . I 5 HOH 2 255 4 HOH HOH B . I 5 HOH 3 256 5 HOH HOH B . I 5 HOH 4 257 8 HOH HOH B . I 5 HOH 5 258 10 HOH HOH B . I 5 HOH 6 259 12 HOH HOH B . I 5 HOH 7 260 13 HOH HOH B . I 5 HOH 8 261 16 HOH HOH B . I 5 HOH 9 262 17 HOH HOH B . I 5 HOH 10 263 18 HOH HOH B . I 5 HOH 11 264 19 HOH HOH B . I 5 HOH 12 265 21 HOH HOH B . I 5 HOH 13 266 22 HOH HOH B . I 5 HOH 14 267 23 HOH HOH B . I 5 HOH 15 268 28 HOH HOH B . I 5 HOH 16 269 30 HOH HOH B . I 5 HOH 17 270 36 HOH HOH B . I 5 HOH 18 271 42 HOH HOH B . I 5 HOH 19 272 45 HOH HOH B . I 5 HOH 20 273 47 HOH HOH B . I 5 HOH 21 274 49 HOH HOH B . I 5 HOH 22 275 55 HOH HOH B . I 5 HOH 23 276 51 HOH HOH B . I 5 HOH 24 277 52 HOH HOH B . I 5 HOH 25 278 53 HOH HOH B . I 5 HOH 26 279 56 HOH HOH B . I 5 HOH 27 280 59 HOH HOH B . I 5 HOH 28 281 60 HOH HOH B . I 5 HOH 29 282 61 HOH HOH B . I 5 HOH 30 283 62 HOH HOH B . I 5 HOH 31 284 50 HOH HOH B . J 5 HOH 1 15 7 HOH HOH C . J 5 HOH 2 43 43 HOH HOH C . J 5 HOH 3 57 57 HOH HOH C . K 5 HOH 1 16 6 HOH HOH D . K 5 HOH 2 34 34 HOH HOH D . K 5 HOH 3 38 38 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7220 ? 1 MORE -24 ? 1 'SSA (A^2)' 20800 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 3 'Structure model' software 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_initial_refinement_model 7 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 8 4 'Structure model' struct_ref_seq_dif 9 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 18.0349 4.4317 8.2072 0.1577 0.2105 0.1272 0.1945 0.0077 0.0724 2.0340 1.4533 3.8348 -0.0235 1.4097 0.1694 -0.0480 0.1047 -0.0272 -0.0188 0.2114 -0.1760 0.1150 -0.3019 -0.5095 'X-RAY DIFFRACTION' 2 ? refined 38.9785 -5.0658 21.4929 0.2378 0.2106 0.2054 0.0466 -0.0676 0.0162 2.0831 2.6614 1.8752 -0.3748 0.7481 0.5361 0.0591 -0.0912 -0.0037 -0.0959 -0.0292 -0.2374 0.1959 0.0981 0.0794 'X-RAY DIFFRACTION' 3 ? refined 15.0497 -21.3968 15.0301 0.6923 0.5293 0.6637 -0.2432 -0.1125 -0.1493 2.4783 0.3807 0.2074 0.9614 -0.8302 -0.2711 0.2827 -0.5737 -0.0525 -0.4377 -0.9168 0.3028 0.2030 0.6596 -1.0623 'X-RAY DIFFRACTION' 4 ? refined 42.5850 -7.7645 -4.6446 0.6372 0.7231 0.5693 0.2898 0.1211 -0.1888 1.9634 2.0557 0.6260 0.4051 -0.4804 0.4993 0.2651 -0.2082 -0.0931 0.6805 -0.3863 -0.3159 -0.2381 0.6086 0.0170 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 27 A 252 '(chain A and resid 27:252)' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 28 B 252 '(chain B and resid 28:252)' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 1 C 14 '(chain C and resid 1:14)' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 D 1 D 14 '(chain D and resid 1:14)' ? ? ? ? ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 PHENIX 1.6_289 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 5 DENZO . ? ? ? ? 'data reduction' ? ? ? 6 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 7 MOLREP . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C U 6 ? ? "C1'" C U 6 ? ? N1 C U 6 ? ? 114.80 108.50 6.30 0.70 N 2 1 "O4'" D U 5 ? ? "C1'" D U 5 ? ? N1 D U 5 ? ? 113.77 108.50 5.27 0.70 N 3 1 "O4'" D U 6 ? ? "C1'" D U 6 ? ? N1 D U 6 ? ? 115.55 108.50 7.05 0.70 N 4 1 "C3'" D U 6 ? ? "O3'" D U 6 ? ? P D C 7 ? ? 127.26 119.70 7.56 1.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 29 ? ? -39.91 133.33 2 1 CYS A 70 ? ? -29.36 -62.31 3 1 LEU A 76 ? ? -38.56 -35.40 4 1 SER A 149 ? ? -173.44 148.15 5 1 VAL A 153 ? ? -56.55 -6.72 6 1 ASN A 154 ? ? -136.99 -61.68 7 1 ASP A 183 ? ? -82.98 43.88 8 1 ARG B 82 ? ? -168.66 -142.19 9 1 ASP B 83 ? ? 23.23 35.79 10 1 ILE B 84 ? ? -62.17 96.24 11 1 GLN B 115 ? ? -161.03 107.51 12 1 LEU B 148 ? ? 76.57 -3.96 13 1 ASP B 214 ? ? -90.76 52.88 14 1 PHE B 216 ? ? -63.55 0.64 15 1 ALA B 217 ? ? -153.02 11.58 16 1 ASN B 250 ? ? 64.84 63.25 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B LYS 78 ? CG ? B LYS 79 CG 2 1 Y 1 B LYS 78 ? CD ? B LYS 79 CD 3 1 Y 1 B LYS 78 ? CE ? B LYS 79 CE 4 1 Y 1 B LYS 78 ? NZ ? B LYS 79 NZ 5 1 Y 1 B ARG 82 ? CG ? B ARG 83 CG 6 1 Y 1 B ARG 82 ? CD ? B ARG 83 CD 7 1 Y 1 B ARG 82 ? NE ? B ARG 83 NE 8 1 Y 1 B ARG 82 ? CZ ? B ARG 83 CZ 9 1 Y 1 B ARG 82 ? NH1 ? B ARG 83 NH1 10 1 Y 1 B ARG 82 ? NH2 ? B ARG 83 NH2 11 1 Y 0 B GLN 190 ? CG ? B GLN 191 CG 12 1 Y 0 B GLN 190 ? OE1 ? B GLN 191 OE1 13 1 N 1 A SAH 253 ? OXT ? E SAH 1 OXT 14 1 N 1 B SAH 253 ? OXT ? F SAH 1 OXT # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MET 1 ? A MET 2 3 1 Y 1 A VAL 2 ? A VAL 3 4 1 Y 1 A GLU 3 ? A GLU 4 5 1 Y 1 A ASP 4 ? A ASP 5 6 1 Y 1 A SER 5 ? A SER 6 7 1 Y 1 A ARG 6 ? A ARG 7 8 1 Y 1 A VAL 7 ? A VAL 8 9 1 Y 1 A ARG 8 ? A ARG 9 10 1 Y 1 A ASP 9 ? A ASP 10 11 1 Y 1 A ALA 10 ? A ALA 11 12 1 Y 1 A LEU 11 ? A LEU 12 13 1 Y 1 A LYS 12 ? A LYS 13 14 1 Y 1 A GLY 13 ? A GLY 14 15 1 Y 1 A GLY 14 ? A GLY 15 16 1 Y 1 A ASP 15 ? A ASP 16 17 1 Y 1 A GLN 16 ? A GLN 17 18 1 Y 1 A LYS 17 ? A LYS 18 19 1 Y 1 A ALA 18 ? A ALA 19 20 1 Y 1 A LEU 19 ? A LEU 20 21 1 Y 1 A PRO 20 ? A PRO 21 22 1 Y 1 A ALA 21 ? A ALA 22 23 1 Y 1 A SER 22 ? A SER 23 24 1 Y 1 A LEU 23 ? A LEU 24 25 1 Y 1 A VAL 24 ? A VAL 25 26 1 Y 1 A PRO 25 ? A PRO 26 27 1 Y 1 A GLN 26 ? A GLN 27 28 1 Y 1 A ALA 27 ? A ALA 28 29 1 Y 1 A SER 56 ? A SER 57 30 1 Y 1 A SER 57 ? A SER 58 31 1 Y 1 A ASN 58 ? A ASN 59 32 1 Y 1 A GLY 59 ? A GLY 60 33 1 Y 1 A PRO 60 ? A PRO 61 34 1 Y 1 A GLY 61 ? A GLY 62 35 1 Y 1 A GLY 62 ? A GLY 63 36 1 Y 1 A ASP 63 ? A ASP 64 37 1 Y 1 A LYS 64 ? A LYS 65 38 1 Y 1 A LYS 78 ? A LYS 79 39 1 Y 1 A LYS 79 ? A LYS 80 40 1 Y 1 A MET 80 ? A MET 81 41 1 Y 1 A GLY 81 ? A GLY 82 42 1 Y 1 A ARG 82 ? A ARG 83 43 1 Y 1 B GLY 0 ? B GLY 1 44 1 Y 1 B MET 1 ? B MET 2 45 1 Y 1 B VAL 2 ? B VAL 3 46 1 Y 1 B GLU 3 ? B GLU 4 47 1 Y 1 B ASP 4 ? B ASP 5 48 1 Y 1 B SER 5 ? B SER 6 49 1 Y 1 B ARG 6 ? B ARG 7 50 1 Y 1 B VAL 7 ? B VAL 8 51 1 Y 1 B ARG 8 ? B ARG 9 52 1 Y 1 B ASP 9 ? B ASP 10 53 1 Y 1 B ALA 10 ? B ALA 11 54 1 Y 1 B LEU 11 ? B LEU 12 55 1 Y 1 B LYS 12 ? B LYS 13 56 1 Y 1 B GLY 13 ? B GLY 14 57 1 Y 1 B GLY 14 ? B GLY 15 58 1 Y 1 B ASP 15 ? B ASP 16 59 1 Y 1 B GLN 16 ? B GLN 17 60 1 Y 1 B LYS 17 ? B LYS 18 61 1 Y 1 B ALA 18 ? B ALA 19 62 1 Y 1 B LEU 19 ? B LEU 20 63 1 Y 1 B PRO 20 ? B PRO 21 64 1 Y 1 B ALA 21 ? B ALA 22 65 1 Y 1 B SER 22 ? B SER 23 66 1 Y 1 B LEU 23 ? B LEU 24 67 1 Y 1 B VAL 24 ? B VAL 25 68 1 Y 1 B PRO 25 ? B PRO 26 69 1 Y 1 B GLN 26 ? B GLN 27 70 1 Y 1 B ALA 27 ? B ALA 28 71 1 Y 1 B SER 56 ? B SER 57 72 1 Y 1 B SER 57 ? B SER 58 73 1 Y 1 B ASN 58 ? B ASN 59 74 1 Y 1 B GLY 59 ? B GLY 60 75 1 Y 1 B PRO 60 ? B PRO 61 76 1 Y 1 B GLY 61 ? B GLY 62 77 1 Y 1 B GLY 62 ? B GLY 63 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 HOH O O N N 268 HOH H1 H N N 269 HOH H2 H N N 270 ILE N N N N 271 ILE CA C N S 272 ILE C C N N 273 ILE O O N N 274 ILE CB C N S 275 ILE CG1 C N N 276 ILE CG2 C N N 277 ILE CD1 C N N 278 ILE OXT O N N 279 ILE H H N N 280 ILE H2 H N N 281 ILE HA H N N 282 ILE HB H N N 283 ILE HG12 H N N 284 ILE HG13 H N N 285 ILE HG21 H N N 286 ILE HG22 H N N 287 ILE HG23 H N N 288 ILE HD11 H N N 289 ILE HD12 H N N 290 ILE HD13 H N N 291 ILE HXT H N N 292 LEU N N N N 293 LEU CA C N S 294 LEU C C N N 295 LEU O O N N 296 LEU CB C N N 297 LEU CG C N N 298 LEU CD1 C N N 299 LEU CD2 C N N 300 LEU OXT O N N 301 LEU H H N N 302 LEU H2 H N N 303 LEU HA H N N 304 LEU HB2 H N N 305 LEU HB3 H N N 306 LEU HG H N N 307 LEU HD11 H N N 308 LEU HD12 H N N 309 LEU HD13 H N N 310 LEU HD21 H N N 311 LEU HD22 H N N 312 LEU HD23 H N N 313 LEU HXT H N N 314 LYS N N N N 315 LYS CA C N S 316 LYS C C N N 317 LYS O O N N 318 LYS CB C N N 319 LYS CG C N N 320 LYS CD C N N 321 LYS CE C N N 322 LYS NZ N N N 323 LYS OXT O N N 324 LYS H H N N 325 LYS H2 H N N 326 LYS HA H N N 327 LYS HB2 H N N 328 LYS HB3 H N N 329 LYS HG2 H N N 330 LYS HG3 H N N 331 LYS HD2 H N N 332 LYS HD3 H N N 333 LYS HE2 H N N 334 LYS HE3 H N N 335 LYS HZ1 H N N 336 LYS HZ2 H N N 337 LYS HZ3 H N N 338 LYS HXT H N N 339 MET N N N N 340 MET CA C N S 341 MET C C N N 342 MET O O N N 343 MET CB C N N 344 MET CG C N N 345 MET SD S N N 346 MET CE C N N 347 MET OXT O N N 348 MET H H N N 349 MET H2 H N N 350 MET HA H N N 351 MET HB2 H N N 352 MET HB3 H N N 353 MET HG2 H N N 354 MET HG3 H N N 355 MET HE1 H N N 356 MET HE2 H N N 357 MET HE3 H N N 358 MET HXT H N N 359 MG MG MG N N 360 PHE N N N N 361 PHE CA C N S 362 PHE C C N N 363 PHE O O N N 364 PHE CB C N N 365 PHE CG C Y N 366 PHE CD1 C Y N 367 PHE CD2 C Y N 368 PHE CE1 C Y N 369 PHE CE2 C Y N 370 PHE CZ C Y N 371 PHE OXT O N N 372 PHE H H N N 373 PHE H2 H N N 374 PHE HA H N N 375 PHE HB2 H N N 376 PHE HB3 H N N 377 PHE HD1 H N N 378 PHE HD2 H N N 379 PHE HE1 H N N 380 PHE HE2 H N N 381 PHE HZ H N N 382 PHE HXT H N N 383 PRO N N N N 384 PRO CA C N S 385 PRO C C N N 386 PRO O O N N 387 PRO CB C N N 388 PRO CG C N N 389 PRO CD C N N 390 PRO OXT O N N 391 PRO H H N N 392 PRO HA H N N 393 PRO HB2 H N N 394 PRO HB3 H N N 395 PRO HG2 H N N 396 PRO HG3 H N N 397 PRO HD2 H N N 398 PRO HD3 H N N 399 PRO HXT H N N 400 SAH N N N N 401 SAH CA C N S 402 SAH CB C N N 403 SAH CG C N N 404 SAH SD S N N 405 SAH C C N N 406 SAH O O N N 407 SAH OXT O N N 408 SAH "C5'" C N N 409 SAH "C4'" C N S 410 SAH "O4'" O N N 411 SAH "C3'" C N S 412 SAH "O3'" O N N 413 SAH "C2'" C N R 414 SAH "O2'" O N N 415 SAH "C1'" C N R 416 SAH N9 N Y N 417 SAH C8 C Y N 418 SAH N7 N Y N 419 SAH C5 C Y N 420 SAH C6 C Y N 421 SAH N6 N N N 422 SAH N1 N Y N 423 SAH C2 C Y N 424 SAH N3 N Y N 425 SAH C4 C Y N 426 SAH HN1 H N N 427 SAH HN2 H N N 428 SAH HA H N N 429 SAH HB1 H N N 430 SAH HB2 H N N 431 SAH HG1 H N N 432 SAH HG2 H N N 433 SAH HXT H N N 434 SAH "H5'1" H N N 435 SAH "H5'2" H N N 436 SAH "H4'" H N N 437 SAH "H3'" H N N 438 SAH "HO3'" H N N 439 SAH "H2'" H N N 440 SAH "HO2'" H N N 441 SAH "H1'" H N N 442 SAH H8 H N N 443 SAH HN61 H N N 444 SAH HN62 H N N 445 SAH H2 H N N 446 SER N N N N 447 SER CA C N S 448 SER C C N N 449 SER O O N N 450 SER CB C N N 451 SER OG O N N 452 SER OXT O N N 453 SER H H N N 454 SER H2 H N N 455 SER HA H N N 456 SER HB2 H N N 457 SER HB3 H N N 458 SER HG H N N 459 SER HXT H N N 460 THR N N N N 461 THR CA C N S 462 THR C C N N 463 THR O O N N 464 THR CB C N R 465 THR OG1 O N N 466 THR CG2 C N N 467 THR OXT O N N 468 THR H H N N 469 THR H2 H N N 470 THR HA H N N 471 THR HB H N N 472 THR HG1 H N N 473 THR HG21 H N N 474 THR HG22 H N N 475 THR HG23 H N N 476 THR HXT H N N 477 TRP N N N N 478 TRP CA C N S 479 TRP C C N N 480 TRP O O N N 481 TRP CB C N N 482 TRP CG C Y N 483 TRP CD1 C Y N 484 TRP CD2 C Y N 485 TRP NE1 N Y N 486 TRP CE2 C Y N 487 TRP CE3 C Y N 488 TRP CZ2 C Y N 489 TRP CZ3 C Y N 490 TRP CH2 C Y N 491 TRP OXT O N N 492 TRP H H N N 493 TRP H2 H N N 494 TRP HA H N N 495 TRP HB2 H N N 496 TRP HB3 H N N 497 TRP HD1 H N N 498 TRP HE1 H N N 499 TRP HE3 H N N 500 TRP HZ2 H N N 501 TRP HZ3 H N N 502 TRP HH2 H N N 503 TRP HXT H N N 504 TYR N N N N 505 TYR CA C N S 506 TYR C C N N 507 TYR O O N N 508 TYR CB C N N 509 TYR CG C Y N 510 TYR CD1 C Y N 511 TYR CD2 C Y N 512 TYR CE1 C Y N 513 TYR CE2 C Y N 514 TYR CZ C Y N 515 TYR OH O N N 516 TYR OXT O N N 517 TYR H H N N 518 TYR H2 H N N 519 TYR HA H N N 520 TYR HB2 H N N 521 TYR HB3 H N N 522 TYR HD1 H N N 523 TYR HD2 H N N 524 TYR HE1 H N N 525 TYR HE2 H N N 526 TYR HH H N N 527 TYR HXT H N N 528 U OP3 O N N 529 U P P N N 530 U OP1 O N N 531 U OP2 O N N 532 U "O5'" O N N 533 U "C5'" C N N 534 U "C4'" C N R 535 U "O4'" O N N 536 U "C3'" C N S 537 U "O3'" O N N 538 U "C2'" C N R 539 U "O2'" O N N 540 U "C1'" C N R 541 U N1 N N N 542 U C2 C N N 543 U O2 O N N 544 U N3 N N N 545 U C4 C N N 546 U O4 O N N 547 U C5 C N N 548 U C6 C N N 549 U HOP3 H N N 550 U HOP2 H N N 551 U "H5'" H N N 552 U "H5''" H N N 553 U "H4'" H N N 554 U "H3'" H N N 555 U "HO3'" H N N 556 U "H2'" H N N 557 U "HO2'" H N N 558 U "H1'" H N N 559 U H3 H N N 560 U H5 H N N 561 U H6 H N N 562 VAL N N N N 563 VAL CA C N S 564 VAL C C N N 565 VAL O O N N 566 VAL CB C N N 567 VAL CG1 C N N 568 VAL CG2 C N N 569 VAL OXT O N N 570 VAL H H N N 571 VAL H2 H N N 572 VAL HA H N N 573 VAL HB H N N 574 VAL HG11 H N N 575 VAL HG12 H N N 576 VAL HG13 H N N 577 VAL HG21 H N N 578 VAL HG22 H N N 579 VAL HG23 H N N 580 VAL HXT H N N 581 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 HOH O H1 sing N N 265 HOH O H2 sing N N 266 ILE N CA sing N N 267 ILE N H sing N N 268 ILE N H2 sing N N 269 ILE CA C sing N N 270 ILE CA CB sing N N 271 ILE CA HA sing N N 272 ILE C O doub N N 273 ILE C OXT sing N N 274 ILE CB CG1 sing N N 275 ILE CB CG2 sing N N 276 ILE CB HB sing N N 277 ILE CG1 CD1 sing N N 278 ILE CG1 HG12 sing N N 279 ILE CG1 HG13 sing N N 280 ILE CG2 HG21 sing N N 281 ILE CG2 HG22 sing N N 282 ILE CG2 HG23 sing N N 283 ILE CD1 HD11 sing N N 284 ILE CD1 HD12 sing N N 285 ILE CD1 HD13 sing N N 286 ILE OXT HXT sing N N 287 LEU N CA sing N N 288 LEU N H sing N N 289 LEU N H2 sing N N 290 LEU CA C sing N N 291 LEU CA CB sing N N 292 LEU CA HA sing N N 293 LEU C O doub N N 294 LEU C OXT sing N N 295 LEU CB CG sing N N 296 LEU CB HB2 sing N N 297 LEU CB HB3 sing N N 298 LEU CG CD1 sing N N 299 LEU CG CD2 sing N N 300 LEU CG HG sing N N 301 LEU CD1 HD11 sing N N 302 LEU CD1 HD12 sing N N 303 LEU CD1 HD13 sing N N 304 LEU CD2 HD21 sing N N 305 LEU CD2 HD22 sing N N 306 LEU CD2 HD23 sing N N 307 LEU OXT HXT sing N N 308 LYS N CA sing N N 309 LYS N H sing N N 310 LYS N H2 sing N N 311 LYS CA C sing N N 312 LYS CA CB sing N N 313 LYS CA HA sing N N 314 LYS C O doub N N 315 LYS C OXT sing N N 316 LYS CB CG sing N N 317 LYS CB HB2 sing N N 318 LYS CB HB3 sing N N 319 LYS CG CD sing N N 320 LYS CG HG2 sing N N 321 LYS CG HG3 sing N N 322 LYS CD CE sing N N 323 LYS CD HD2 sing N N 324 LYS CD HD3 sing N N 325 LYS CE NZ sing N N 326 LYS CE HE2 sing N N 327 LYS CE HE3 sing N N 328 LYS NZ HZ1 sing N N 329 LYS NZ HZ2 sing N N 330 LYS NZ HZ3 sing N N 331 LYS OXT HXT sing N N 332 MET N CA sing N N 333 MET N H sing N N 334 MET N H2 sing N N 335 MET CA C sing N N 336 MET CA CB sing N N 337 MET CA HA sing N N 338 MET C O doub N N 339 MET C OXT sing N N 340 MET CB CG sing N N 341 MET CB HB2 sing N N 342 MET CB HB3 sing N N 343 MET CG SD sing N N 344 MET CG HG2 sing N N 345 MET CG HG3 sing N N 346 MET SD CE sing N N 347 MET CE HE1 sing N N 348 MET CE HE2 sing N N 349 MET CE HE3 sing N N 350 MET OXT HXT sing N N 351 PHE N CA sing N N 352 PHE N H sing N N 353 PHE N H2 sing N N 354 PHE CA C sing N N 355 PHE CA CB sing N N 356 PHE CA HA sing N N 357 PHE C O doub N N 358 PHE C OXT sing N N 359 PHE CB CG sing N N 360 PHE CB HB2 sing N N 361 PHE CB HB3 sing N N 362 PHE CG CD1 doub Y N 363 PHE CG CD2 sing Y N 364 PHE CD1 CE1 sing Y N 365 PHE CD1 HD1 sing N N 366 PHE CD2 CE2 doub Y N 367 PHE CD2 HD2 sing N N 368 PHE CE1 CZ doub Y N 369 PHE CE1 HE1 sing N N 370 PHE CE2 CZ sing Y N 371 PHE CE2 HE2 sing N N 372 PHE CZ HZ sing N N 373 PHE OXT HXT sing N N 374 PRO N CA sing N N 375 PRO N CD sing N N 376 PRO N H sing N N 377 PRO CA C sing N N 378 PRO CA CB sing N N 379 PRO CA HA sing N N 380 PRO C O doub N N 381 PRO C OXT sing N N 382 PRO CB CG sing N N 383 PRO CB HB2 sing N N 384 PRO CB HB3 sing N N 385 PRO CG CD sing N N 386 PRO CG HG2 sing N N 387 PRO CG HG3 sing N N 388 PRO CD HD2 sing N N 389 PRO CD HD3 sing N N 390 PRO OXT HXT sing N N 391 SAH N CA sing N N 392 SAH N HN1 sing N N 393 SAH N HN2 sing N N 394 SAH CA CB sing N N 395 SAH CA C sing N N 396 SAH CA HA sing N N 397 SAH CB CG sing N N 398 SAH CB HB1 sing N N 399 SAH CB HB2 sing N N 400 SAH CG SD sing N N 401 SAH CG HG1 sing N N 402 SAH CG HG2 sing N N 403 SAH SD "C5'" sing N N 404 SAH C O doub N N 405 SAH C OXT sing N N 406 SAH OXT HXT sing N N 407 SAH "C5'" "C4'" sing N N 408 SAH "C5'" "H5'1" sing N N 409 SAH "C5'" "H5'2" sing N N 410 SAH "C4'" "O4'" sing N N 411 SAH "C4'" "C3'" sing N N 412 SAH "C4'" "H4'" sing N N 413 SAH "O4'" "C1'" sing N N 414 SAH "C3'" "O3'" sing N N 415 SAH "C3'" "C2'" sing N N 416 SAH "C3'" "H3'" sing N N 417 SAH "O3'" "HO3'" sing N N 418 SAH "C2'" "O2'" sing N N 419 SAH "C2'" "C1'" sing N N 420 SAH "C2'" "H2'" sing N N 421 SAH "O2'" "HO2'" sing N N 422 SAH "C1'" N9 sing N N 423 SAH "C1'" "H1'" sing N N 424 SAH N9 C8 sing Y N 425 SAH N9 C4 sing Y N 426 SAH C8 N7 doub Y N 427 SAH C8 H8 sing N N 428 SAH N7 C5 sing Y N 429 SAH C5 C6 sing Y N 430 SAH C5 C4 doub Y N 431 SAH C6 N6 sing N N 432 SAH C6 N1 doub Y N 433 SAH N6 HN61 sing N N 434 SAH N6 HN62 sing N N 435 SAH N1 C2 sing Y N 436 SAH C2 N3 doub Y N 437 SAH C2 H2 sing N N 438 SAH N3 C4 sing Y N 439 SER N CA sing N N 440 SER N H sing N N 441 SER N H2 sing N N 442 SER CA C sing N N 443 SER CA CB sing N N 444 SER CA HA sing N N 445 SER C O doub N N 446 SER C OXT sing N N 447 SER CB OG sing N N 448 SER CB HB2 sing N N 449 SER CB HB3 sing N N 450 SER OG HG sing N N 451 SER OXT HXT sing N N 452 THR N CA sing N N 453 THR N H sing N N 454 THR N H2 sing N N 455 THR CA C sing N N 456 THR CA CB sing N N 457 THR CA HA sing N N 458 THR C O doub N N 459 THR C OXT sing N N 460 THR CB OG1 sing N N 461 THR CB CG2 sing N N 462 THR CB HB sing N N 463 THR OG1 HG1 sing N N 464 THR CG2 HG21 sing N N 465 THR CG2 HG22 sing N N 466 THR CG2 HG23 sing N N 467 THR OXT HXT sing N N 468 TRP N CA sing N N 469 TRP N H sing N N 470 TRP N H2 sing N N 471 TRP CA C sing N N 472 TRP CA CB sing N N 473 TRP CA HA sing N N 474 TRP C O doub N N 475 TRP C OXT sing N N 476 TRP CB CG sing N N 477 TRP CB HB2 sing N N 478 TRP CB HB3 sing N N 479 TRP CG CD1 doub Y N 480 TRP CG CD2 sing Y N 481 TRP CD1 NE1 sing Y N 482 TRP CD1 HD1 sing N N 483 TRP CD2 CE2 doub Y N 484 TRP CD2 CE3 sing Y N 485 TRP NE1 CE2 sing Y N 486 TRP NE1 HE1 sing N N 487 TRP CE2 CZ2 sing Y N 488 TRP CE3 CZ3 doub Y N 489 TRP CE3 HE3 sing N N 490 TRP CZ2 CH2 doub Y N 491 TRP CZ2 HZ2 sing N N 492 TRP CZ3 CH2 sing Y N 493 TRP CZ3 HZ3 sing N N 494 TRP CH2 HH2 sing N N 495 TRP OXT HXT sing N N 496 TYR N CA sing N N 497 TYR N H sing N N 498 TYR N H2 sing N N 499 TYR CA C sing N N 500 TYR CA CB sing N N 501 TYR CA HA sing N N 502 TYR C O doub N N 503 TYR C OXT sing N N 504 TYR CB CG sing N N 505 TYR CB HB2 sing N N 506 TYR CB HB3 sing N N 507 TYR CG CD1 doub Y N 508 TYR CG CD2 sing Y N 509 TYR CD1 CE1 sing Y N 510 TYR CD1 HD1 sing N N 511 TYR CD2 CE2 doub Y N 512 TYR CD2 HD2 sing N N 513 TYR CE1 CZ doub Y N 514 TYR CE1 HE1 sing N N 515 TYR CE2 CZ sing Y N 516 TYR CE2 HE2 sing N N 517 TYR CZ OH sing N N 518 TYR OH HH sing N N 519 TYR OXT HXT sing N N 520 U OP3 P sing N N 521 U OP3 HOP3 sing N N 522 U P OP1 doub N N 523 U P OP2 sing N N 524 U P "O5'" sing N N 525 U OP2 HOP2 sing N N 526 U "O5'" "C5'" sing N N 527 U "C5'" "C4'" sing N N 528 U "C5'" "H5'" sing N N 529 U "C5'" "H5''" sing N N 530 U "C4'" "O4'" sing N N 531 U "C4'" "C3'" sing N N 532 U "C4'" "H4'" sing N N 533 U "O4'" "C1'" sing N N 534 U "C3'" "O3'" sing N N 535 U "C3'" "C2'" sing N N 536 U "C3'" "H3'" sing N N 537 U "O3'" "HO3'" sing N N 538 U "C2'" "O2'" sing N N 539 U "C2'" "C1'" sing N N 540 U "C2'" "H2'" sing N N 541 U "O2'" "HO2'" sing N N 542 U "C1'" N1 sing N N 543 U "C1'" "H1'" sing N N 544 U N1 C2 sing N N 545 U N1 C6 sing N N 546 U C2 O2 doub N N 547 U C2 N3 sing N N 548 U N3 C4 sing N N 549 U N3 H3 sing N N 550 U C4 O4 doub N N 551 U C4 C5 sing N N 552 U C5 C6 doub N N 553 U C5 H5 sing N N 554 U C6 H6 sing N N 555 VAL N CA sing N N 556 VAL N H sing N N 557 VAL N H2 sing N N 558 VAL CA C sing N N 559 VAL CA CB sing N N 560 VAL CA HA sing N N 561 VAL C O doub N N 562 VAL C OXT sing N N 563 VAL CB CG1 sing N N 564 VAL CB CG2 sing N N 565 VAL CB HB sing N N 566 VAL CG1 HG11 sing N N 567 VAL CG1 HG12 sing N N 568 VAL CG1 HG13 sing N N 569 VAL CG2 HG21 sing N N 570 VAL CG2 HG22 sing N N 571 VAL CG2 HG23 sing N N 572 VAL OXT HXT sing N N 573 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3OIJ 'a-form double helix' 3OIJ 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C G 1 1_555 C C 14 1_555 -0.134 -0.224 -0.100 -6.129 -5.469 0.880 1 C_G1:C14_C C 1 ? C 14 ? 19 1 1 C G 2 1_555 C C 13 1_555 -0.046 0.046 0.199 -1.663 -9.555 9.076 2 C_G2:C13_C C 2 ? C 13 ? 19 1 1 C G 3 1_555 C C 12 1_555 0.569 0.038 0.099 -13.612 -14.630 -1.027 3 C_G3:C12_C C 3 ? C 12 ? 19 1 1 C C 4 1_555 C G 11 1_555 0.097 0.066 0.616 -12.610 -9.413 3.207 4 C_C4:G11_C C 4 ? C 11 ? 19 1 1 D G 1 1_555 D C 14 1_555 0.156 -0.107 0.226 0.698 -0.958 2.158 5 D_G1:C14_D D 1 ? D 14 ? 19 1 1 D G 2 1_555 D C 13 1_555 0.239 0.042 -0.107 -8.233 -13.188 1.538 6 D_G2:C13_D D 2 ? D 13 ? 19 1 1 D G 3 1_555 D C 12 1_555 -0.091 -0.151 0.028 -14.692 -17.949 2.398 7 D_G3:C12_D D 3 ? D 12 ? 19 1 1 D C 4 1_555 D G 11 1_555 0.116 0.121 0.775 -17.704 -10.291 5.190 8 D_C4:G11_D D 4 ? D 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C G 1 1_555 C C 14 1_555 C G 2 1_555 C C 13 1_555 0.679 -1.672 3.148 -0.829 3.287 32.012 -3.564 -1.364 2.949 5.939 1.498 32.186 1 CC_G1G2:C13C14_CC C 1 ? C 14 ? C 2 ? C 13 ? 1 C G 2 1_555 C C 13 1_555 C G 3 1_555 C C 12 1_555 0.072 -2.197 3.506 4.572 4.162 32.037 -4.660 0.691 3.183 7.454 -8.189 32.612 2 CC_G2G3:C12C13_CC C 2 ? C 13 ? C 3 ? C 12 ? 1 C G 3 1_555 C C 12 1_555 C C 4 1_555 C G 11 1_555 -0.432 -1.987 3.117 -1.503 6.387 28.634 -5.145 0.565 2.640 12.703 2.990 29.361 3 CC_G3C4:G11C12_CC C 3 ? C 12 ? C 4 ? C 11 ? 1 D G 1 1_555 D C 14 1_555 D G 2 1_555 D C 13 1_555 0.055 -1.823 3.506 4.755 5.140 31.674 -4.198 0.764 3.154 9.276 -8.581 32.419 4 DD_G1G2:C13C14_DD D 1 ? D 14 ? D 2 ? D 13 ? 1 D G 2 1_555 D C 13 1_555 D G 3 1_555 D C 12 1_555 0.642 -2.153 3.320 2.113 6.432 30.765 -5.115 -0.806 2.859 11.942 -3.923 31.483 5 DD_G2G3:C12C13_DD D 2 ? D 13 ? D 3 ? D 12 ? 1 D G 3 1_555 D C 12 1_555 D C 4 1_555 D G 11 1_555 -0.431 -1.824 3.280 -4.203 3.150 30.886 -3.965 0.018 3.113 5.862 7.820 31.319 6 DD_G3C4:G11C12_DD D 3 ? D 12 ? D 4 ? D 11 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 S-ADENOSYL-L-HOMOCYSTEINE SAH 4 'MAGNESIUM ION' MG 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2V3J _pdbx_initial_refinement_model.details ? #