data_3OIO # _entry.id 3OIO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3OIO RCSB RCSB061164 WWPDB D_1000061164 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC66737.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3OIO _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-08-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chang, C.' 1 'Mack, J.' 2 'Feldman, B.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Crystal structure of transcriptional regulator (AraC-type DNA-binding domain-containing proteins) from Chromobacterium violaceum' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chang, C.' 1 ? primary 'Mack, J.' 2 ? primary 'Feldman, B.' 3 ? primary 'Joachimiak, A.' 4 ? # _cell.length_a 96.753 _cell.length_b 96.753 _cell.length_c 33.312 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3OIO _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 65' _symmetry.entry_id 3OIO _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 170 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional regulator (AraC-type DNA-binding domain-containing proteins)' 12840.261 1 ? ? 'sequence database residues 216-325' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 106 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNAGSQPKLTEAVSL(MSE)EANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQLLQQTSKSIV QIGLACGFSSGPHFSSTYRNHFNITPREERAQRAQPG ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAGSQPKLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQLLQQTSKSIVQIGL ACGFSSGPHFSSTYRNHFNITPREERAQRAQPG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC66737.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 GLY n 1 5 SER n 1 6 GLN n 1 7 PRO n 1 8 LYS n 1 9 LEU n 1 10 THR n 1 11 GLU n 1 12 ALA n 1 13 VAL n 1 14 SER n 1 15 LEU n 1 16 MSE n 1 17 GLU n 1 18 ALA n 1 19 ASN n 1 20 ILE n 1 21 GLU n 1 22 GLU n 1 23 PRO n 1 24 LEU n 1 25 SER n 1 26 THR n 1 27 ASP n 1 28 ASP n 1 29 ILE n 1 30 ALA n 1 31 TYR n 1 32 TYR n 1 33 VAL n 1 34 GLY n 1 35 VAL n 1 36 SER n 1 37 ARG n 1 38 ARG n 1 39 GLN n 1 40 LEU n 1 41 GLU n 1 42 ARG n 1 43 LEU n 1 44 PHE n 1 45 LYS n 1 46 GLN n 1 47 TYR n 1 48 LEU n 1 49 GLY n 1 50 THR n 1 51 VAL n 1 52 PRO n 1 53 SER n 1 54 LYS n 1 55 TYR n 1 56 TYR n 1 57 LEU n 1 58 GLU n 1 59 LEU n 1 60 ARG n 1 61 LEU n 1 62 ASN n 1 63 ARG n 1 64 ALA n 1 65 ARG n 1 66 GLN n 1 67 LEU n 1 68 LEU n 1 69 GLN n 1 70 GLN n 1 71 THR n 1 72 SER n 1 73 LYS n 1 74 SER n 1 75 ILE n 1 76 VAL n 1 77 GLN n 1 78 ILE n 1 79 GLY n 1 80 LEU n 1 81 ALA n 1 82 CYS n 1 83 GLY n 1 84 PHE n 1 85 SER n 1 86 SER n 1 87 GLY n 1 88 PRO n 1 89 HIS n 1 90 PHE n 1 91 SER n 1 92 SER n 1 93 THR n 1 94 TYR n 1 95 ARG n 1 96 ASN n 1 97 HIS n 1 98 PHE n 1 99 ASN n 1 100 ILE n 1 101 THR n 1 102 PRO n 1 103 ARG n 1 104 GLU n 1 105 GLU n 1 106 ARG n 1 107 ALA n 1 108 GLN n 1 109 ARG n 1 110 ALA n 1 111 GLN n 1 112 PRO n 1 113 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'argR, CV_3088' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Chromobacterium violaceum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 536 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pMCSG19b _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7NTG7_CHRVO _struct_ref.pdbx_db_accession Q7NTG7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GSQPKLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQLLQQTSKSIVQIGLACG FSSGPHFSSTYRNHFNITPREERAQRAQPG ; _struct_ref.pdbx_align_begin 216 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3OIO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 113 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7NTG7 _struct_ref_seq.db_align_beg 216 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 325 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 216 _struct_ref_seq.pdbx_auth_seq_align_end 325 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3OIO SER A 1 ? UNP Q7NTG7 ? ? 'expression tag' 213 1 1 3OIO ASN A 2 ? UNP Q7NTG7 ? ? 'expression tag' 214 2 1 3OIO ALA A 3 ? UNP Q7NTG7 ? ? 'expression tag' 215 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3OIO _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.51 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 64.91 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1M Bis-Tris propane, 1.5M Ammonium Sulfate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 297K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-03-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si(111) double crystal' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97929 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97929 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3OIO _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 1.65 _reflns.d_resolution_low 31.67 _reflns.number_all 21726 _reflns.number_obs 21721 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.070 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 49.3 _reflns.B_iso_Wilson_estimate 21.6 _reflns.pdbx_redundancy 11.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.68 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.544 _reflns_shell.meanI_over_sigI_obs 5.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 11.0 _reflns_shell.number_unique_all 1087 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3OIO _refine.ls_d_res_high 1.6500 _refine.ls_d_res_low 31.67 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 100.00 _refine.ls_number_reflns_obs 21452 _refine.ls_number_reflns_all 21452 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED' _refine.ls_R_factor_all 0.1627 _refine.ls_R_factor_obs 0.1627 _refine.ls_R_factor_R_work 0.1608 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1819 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 9.3000 _refine.ls_number_reflns_R_free 1997 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 25.2935 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.4800 _refine.aniso_B[2][2] 0.4800 _refine.aniso_B[3][3] -0.7200 _refine.aniso_B[1][2] 0.2400 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9630 _refine.correlation_coeff_Fo_to_Fc_free 0.9580 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.0760 _refine.overall_SU_ML 0.0440 _refine.overall_SU_B 2.8400 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 113.720 _refine.B_iso_min 6.730 _refine.occupancy_max 1.000 _refine.occupancy_min 0.330 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.100 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 891 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 106 _refine_hist.number_atoms_total 1003 _refine_hist.d_res_high 1.6500 _refine_hist.d_res_low 31.67 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1105 0.015 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1513 1.473 1.969 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 144 4.880 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 56 32.338 22.679 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 194 15.193 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13 19.452 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 157 0.098 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 893 0.008 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 671 1.746 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1099 3.124 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 434 4.362 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 414 7.009 4.500 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1105 1.898 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.6510 _refine_ls_shell.d_res_low 1.6940 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.number_reflns_R_work 1382 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2220 _refine_ls_shell.R_factor_R_free 0.2710 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 142 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1524 _refine_ls_shell.number_reflns_obs 1524 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3OIO _struct.title 'Crystal structure of transcriptional regulator (AraC-type DNA-binding domain-containing proteins) from Chromobacterium violaceum' _struct.pdbx_descriptor 'Transcriptional regulator (AraC-type DNA-binding domain-containing proteins)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3OIO _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR' _struct_keywords.text ;PSI-2, Midwest Center for Structural Genomics, Protein Structure Initiative, MCSG, transcriptional regulator, DNA-binding, TRANSCRIPTION REGULATOR ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 2 ? SER A 5 ? ASN A 214 SER A 217 5 ? 4 HELX_P HELX_P2 2 GLN A 6 ? ALA A 18 ? GLN A 218 ALA A 230 1 ? 13 HELX_P HELX_P3 3 SER A 25 ? GLY A 34 ? SER A 237 GLY A 246 1 ? 10 HELX_P HELX_P4 4 SER A 36 ? LEU A 48 ? SER A 248 LEU A 260 1 ? 13 HELX_P HELX_P5 5 VAL A 51 ? THR A 71 ? VAL A 263 THR A 283 1 ? 21 HELX_P HELX_P6 6 SER A 74 ? CYS A 82 ? SER A 286 CYS A 294 1 ? 9 HELX_P HELX_P7 7 SER A 86 ? ASN A 99 ? SER A 298 ASN A 311 1 ? 14 HELX_P HELX_P8 8 THR A 101 ? GLN A 108 ? THR A 313 GLN A 320 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A LEU 15 C ? ? ? 1_555 A MSE 16 N ? ? A LEU 227 A MSE 228 1_555 ? ? ? ? ? ? ? 1.334 ? covale2 covale both ? A MSE 16 C ? ? ? 1_555 A GLU 17 N ? ? A MSE 228 A GLU 229 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CL A 401' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 HOH D . ? HOH A 49 . ? 1_555 ? 2 AC1 3 ILE A 20 ? ILE A 232 . ? 1_555 ? 3 AC1 3 GLU A 21 ? GLU A 233 . ? 1_555 ? 4 AC2 5 HOH D . ? HOH A 68 . ? 1_555 ? 5 AC2 5 SER A 74 ? SER A 286 . ? 1_555 ? 6 AC2 5 ILE A 75 ? ILE A 287 . ? 1_555 ? 7 AC2 5 ARG A 103 ? ARG A 315 . ? 1_555 ? 8 AC2 5 ARG A 106 ? ARG A 318 . ? 1_555 ? # _atom_sites.entry_id 3OIO _atom_sites.fract_transf_matrix[1][1] 0.010336 _atom_sites.fract_transf_matrix[1][2] 0.005967 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011935 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030019 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 213 ? ? ? A . n A 1 2 ASN 2 214 214 ASN ASN A . n A 1 3 ALA 3 215 215 ALA ALA A . n A 1 4 GLY 4 216 216 GLY GLY A . n A 1 5 SER 5 217 217 SER SER A . n A 1 6 GLN 6 218 218 GLN GLN A . n A 1 7 PRO 7 219 219 PRO PRO A . n A 1 8 LYS 8 220 220 LYS LYS A . n A 1 9 LEU 9 221 221 LEU LEU A . n A 1 10 THR 10 222 222 THR THR A . n A 1 11 GLU 11 223 223 GLU GLU A . n A 1 12 ALA 12 224 224 ALA ALA A . n A 1 13 VAL 13 225 225 VAL VAL A . n A 1 14 SER 14 226 226 SER SER A . n A 1 15 LEU 15 227 227 LEU LEU A . n A 1 16 MSE 16 228 228 MSE MSE A . n A 1 17 GLU 17 229 229 GLU GLU A . n A 1 18 ALA 18 230 230 ALA ALA A . n A 1 19 ASN 19 231 231 ASN ASN A . n A 1 20 ILE 20 232 232 ILE ILE A . n A 1 21 GLU 21 233 233 GLU GLU A . n A 1 22 GLU 22 234 234 GLU GLU A . n A 1 23 PRO 23 235 235 PRO PRO A . n A 1 24 LEU 24 236 236 LEU LEU A . n A 1 25 SER 25 237 237 SER SER A . n A 1 26 THR 26 238 238 THR THR A . n A 1 27 ASP 27 239 239 ASP ASP A . n A 1 28 ASP 28 240 240 ASP ASP A . n A 1 29 ILE 29 241 241 ILE ILE A . n A 1 30 ALA 30 242 242 ALA ALA A . n A 1 31 TYR 31 243 243 TYR TYR A . n A 1 32 TYR 32 244 244 TYR TYR A . n A 1 33 VAL 33 245 245 VAL VAL A . n A 1 34 GLY 34 246 246 GLY GLY A . n A 1 35 VAL 35 247 247 VAL VAL A . n A 1 36 SER 36 248 248 SER SER A . n A 1 37 ARG 37 249 249 ARG ARG A . n A 1 38 ARG 38 250 250 ARG ARG A . n A 1 39 GLN 39 251 251 GLN GLN A . n A 1 40 LEU 40 252 252 LEU LEU A . n A 1 41 GLU 41 253 253 GLU GLU A . n A 1 42 ARG 42 254 254 ARG ARG A . n A 1 43 LEU 43 255 255 LEU LEU A . n A 1 44 PHE 44 256 256 PHE PHE A . n A 1 45 LYS 45 257 257 LYS LYS A . n A 1 46 GLN 46 258 258 GLN GLN A . n A 1 47 TYR 47 259 259 TYR TYR A . n A 1 48 LEU 48 260 260 LEU LEU A . n A 1 49 GLY 49 261 261 GLY GLY A . n A 1 50 THR 50 262 262 THR THR A . n A 1 51 VAL 51 263 263 VAL VAL A . n A 1 52 PRO 52 264 264 PRO PRO A . n A 1 53 SER 53 265 265 SER SER A . n A 1 54 LYS 54 266 266 LYS LYS A . n A 1 55 TYR 55 267 267 TYR TYR A . n A 1 56 TYR 56 268 268 TYR TYR A . n A 1 57 LEU 57 269 269 LEU LEU A . n A 1 58 GLU 58 270 270 GLU GLU A . n A 1 59 LEU 59 271 271 LEU LEU A . n A 1 60 ARG 60 272 272 ARG ARG A . n A 1 61 LEU 61 273 273 LEU LEU A . n A 1 62 ASN 62 274 274 ASN ASN A . n A 1 63 ARG 63 275 275 ARG ARG A . n A 1 64 ALA 64 276 276 ALA ALA A . n A 1 65 ARG 65 277 277 ARG ARG A . n A 1 66 GLN 66 278 278 GLN GLN A . n A 1 67 LEU 67 279 279 LEU LEU A . n A 1 68 LEU 68 280 280 LEU LEU A . n A 1 69 GLN 69 281 281 GLN GLN A . n A 1 70 GLN 70 282 282 GLN GLN A . n A 1 71 THR 71 283 283 THR THR A . n A 1 72 SER 72 284 284 SER SER A . n A 1 73 LYS 73 285 285 LYS LYS A . n A 1 74 SER 74 286 286 SER SER A . n A 1 75 ILE 75 287 287 ILE ILE A . n A 1 76 VAL 76 288 288 VAL VAL A . n A 1 77 GLN 77 289 289 GLN GLN A . n A 1 78 ILE 78 290 290 ILE ILE A . n A 1 79 GLY 79 291 291 GLY GLY A . n A 1 80 LEU 80 292 292 LEU LEU A . n A 1 81 ALA 81 293 293 ALA ALA A . n A 1 82 CYS 82 294 294 CYS CYS A . n A 1 83 GLY 83 295 295 GLY GLY A . n A 1 84 PHE 84 296 296 PHE PHE A . n A 1 85 SER 85 297 297 SER SER A . n A 1 86 SER 86 298 298 SER SER A . n A 1 87 GLY 87 299 299 GLY GLY A . n A 1 88 PRO 88 300 300 PRO PRO A . n A 1 89 HIS 89 301 301 HIS HIS A . n A 1 90 PHE 90 302 302 PHE PHE A . n A 1 91 SER 91 303 303 SER SER A . n A 1 92 SER 92 304 304 SER SER A . n A 1 93 THR 93 305 305 THR THR A . n A 1 94 TYR 94 306 306 TYR TYR A . n A 1 95 ARG 95 307 307 ARG ARG A . n A 1 96 ASN 96 308 308 ASN ASN A . n A 1 97 HIS 97 309 309 HIS HIS A . n A 1 98 PHE 98 310 310 PHE PHE A . n A 1 99 ASN 99 311 311 ASN ASN A . n A 1 100 ILE 100 312 312 ILE ILE A . n A 1 101 THR 101 313 313 THR THR A . n A 1 102 PRO 102 314 314 PRO PRO A . n A 1 103 ARG 103 315 315 ARG ARG A . n A 1 104 GLU 104 316 316 GLU GLU A . n A 1 105 GLU 105 317 317 GLU GLU A . n A 1 106 ARG 106 318 318 ARG ARG A . n A 1 107 ALA 107 319 319 ALA ALA A . n A 1 108 GLN 108 320 320 GLN GLN A . n A 1 109 ARG 109 321 321 ARG ARG A . n A 1 110 ALA 110 322 322 ALA ALA A . n A 1 111 GLN 111 323 323 GLN GLN A . n A 1 112 PRO 112 324 324 PRO PRO A . n A 1 113 GLY 113 325 325 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 401 401 CL CL A . C 3 SO4 1 402 402 SO4 SO4 A . D 4 HOH 1 1 1 HOH HOH A . D 4 HOH 2 2 2 HOH HOH A . D 4 HOH 3 3 3 HOH HOH A . D 4 HOH 4 4 4 HOH HOH A . D 4 HOH 5 5 5 HOH HOH A . D 4 HOH 6 6 6 HOH HOH A . D 4 HOH 7 7 7 HOH HOH A . D 4 HOH 8 8 8 HOH HOH A . D 4 HOH 9 9 9 HOH HOH A . D 4 HOH 10 10 10 HOH HOH A . D 4 HOH 11 11 11 HOH HOH A . D 4 HOH 12 12 12 HOH HOH A . D 4 HOH 13 13 13 HOH HOH A . D 4 HOH 14 14 14 HOH HOH A . D 4 HOH 15 15 15 HOH HOH A . D 4 HOH 16 16 16 HOH HOH A . D 4 HOH 17 17 17 HOH HOH A . D 4 HOH 18 18 18 HOH HOH A . D 4 HOH 19 19 19 HOH HOH A . D 4 HOH 20 20 20 HOH HOH A . D 4 HOH 21 21 21 HOH HOH A . D 4 HOH 22 22 22 HOH HOH A . D 4 HOH 23 23 23 HOH HOH A . D 4 HOH 24 24 24 HOH HOH A . D 4 HOH 25 25 25 HOH HOH A . D 4 HOH 26 26 26 HOH HOH A . D 4 HOH 27 27 27 HOH HOH A . D 4 HOH 28 28 28 HOH HOH A . D 4 HOH 29 29 29 HOH HOH A . D 4 HOH 30 30 30 HOH HOH A . D 4 HOH 31 31 31 HOH HOH A . D 4 HOH 32 32 32 HOH HOH A . D 4 HOH 33 33 33 HOH HOH A . D 4 HOH 34 34 34 HOH HOH A . D 4 HOH 35 35 35 HOH HOH A . D 4 HOH 36 36 36 HOH HOH A . D 4 HOH 37 37 37 HOH HOH A . D 4 HOH 38 38 38 HOH HOH A . D 4 HOH 39 39 39 HOH HOH A . D 4 HOH 40 40 40 HOH HOH A . D 4 HOH 41 41 41 HOH HOH A . D 4 HOH 42 42 42 HOH HOH A . D 4 HOH 43 43 43 HOH HOH A . D 4 HOH 44 44 44 HOH HOH A . D 4 HOH 45 45 45 HOH HOH A . D 4 HOH 46 46 46 HOH HOH A . D 4 HOH 47 47 47 HOH HOH A . D 4 HOH 48 48 48 HOH HOH A . D 4 HOH 49 49 49 HOH HOH A . D 4 HOH 50 50 50 HOH HOH A . D 4 HOH 51 51 51 HOH HOH A . D 4 HOH 52 52 52 HOH HOH A . D 4 HOH 53 53 53 HOH HOH A . D 4 HOH 54 54 54 HOH HOH A . D 4 HOH 55 55 55 HOH HOH A . D 4 HOH 56 56 56 HOH HOH A . D 4 HOH 57 57 57 HOH HOH A . D 4 HOH 58 58 58 HOH HOH A . D 4 HOH 59 59 59 HOH HOH A . D 4 HOH 60 60 60 HOH HOH A . D 4 HOH 61 61 61 HOH HOH A . D 4 HOH 62 62 62 HOH HOH A . D 4 HOH 63 63 63 HOH HOH A . D 4 HOH 64 64 64 HOH HOH A . D 4 HOH 65 65 65 HOH HOH A . D 4 HOH 66 66 66 HOH HOH A . D 4 HOH 67 67 67 HOH HOH A . D 4 HOH 68 68 68 HOH HOH A . D 4 HOH 69 69 69 HOH HOH A . D 4 HOH 70 70 70 HOH HOH A . D 4 HOH 71 71 71 HOH HOH A . D 4 HOH 72 72 72 HOH HOH A . D 4 HOH 73 73 73 HOH HOH A . D 4 HOH 74 74 74 HOH HOH A . D 4 HOH 75 75 75 HOH HOH A . D 4 HOH 76 76 76 HOH HOH A . D 4 HOH 77 77 77 HOH HOH A . D 4 HOH 78 78 78 HOH HOH A . D 4 HOH 79 79 79 HOH HOH A . D 4 HOH 80 80 80 HOH HOH A . D 4 HOH 81 81 81 HOH HOH A . D 4 HOH 82 82 82 HOH HOH A . D 4 HOH 83 83 83 HOH HOH A . D 4 HOH 84 84 84 HOH HOH A . D 4 HOH 85 85 85 HOH HOH A . D 4 HOH 86 86 86 HOH HOH A . D 4 HOH 87 87 87 HOH HOH A . D 4 HOH 88 88 88 HOH HOH A . D 4 HOH 89 89 89 HOH HOH A . D 4 HOH 90 90 90 HOH HOH A . D 4 HOH 91 91 91 HOH HOH A . D 4 HOH 92 92 92 HOH HOH A . D 4 HOH 93 93 93 HOH HOH A . D 4 HOH 94 94 94 HOH HOH A . D 4 HOH 95 95 95 HOH HOH A . D 4 HOH 96 96 96 HOH HOH A . D 4 HOH 97 97 97 HOH HOH A . D 4 HOH 98 98 98 HOH HOH A . D 4 HOH 99 99 99 HOH HOH A . D 4 HOH 100 100 100 HOH HOH A . D 4 HOH 101 101 101 HOH HOH A . D 4 HOH 102 102 102 HOH HOH A . D 4 HOH 103 103 103 HOH HOH A . D 4 HOH 104 104 104 HOH HOH A . D 4 HOH 105 105 105 HOH HOH A . D 4 HOH 106 106 106 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 16 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 228 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2019-12-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 2 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 19.9710 45.1159 13.8048 0.0091 0.0145 0.0003 0.0022 -0.0002 -0.0033 0.3725 0.1992 0.1392 -0.0747 -0.0475 -0.1670 0.0161 -0.0070 -0.0090 0.0255 0.0083 0.0043 0.0096 -0.0096 -0.0069 'X-RAY DIFFRACTION' 2 ? refined 7.0573 43.3393 26.9157 0.0095 0.0084 0.0092 0.0008 -0.0010 0.0009 0.2935 0.0234 0.1655 -0.1729 -0.0773 0.0291 -0.0059 0.0012 0.0047 -0.0010 -0.0285 0.0146 -0.0020 0.0059 -0.0083 'X-RAY DIFFRACTION' 3 ? refined 5.0405 48.3008 34.2561 0.0118 0.0104 0.0035 0.0000 0.0002 0.0030 -0.0490 0.0584 0.2705 -0.0467 -0.0069 -0.0141 -0.0017 0.0065 -0.0048 -0.0065 -0.0031 -0.0038 -0.0008 -0.0010 0.0051 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 217 A 262 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 263 A 294 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 295 A 327 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 4 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 6 PHENIX . ? ? ? ? phasing ? ? ? 7 SOLVE . ? ? ? ? phasing ? ? ? 8 RESOLVE . ? ? ? ? phasing ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 297 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 96 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.15 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 TYR _pdbx_validate_symm_contact.auth_seq_id_1 259 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 B _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 GLN _pdbx_validate_symm_contact.auth_seq_id_2 282 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_664 _pdbx_validate_symm_contact.dist 2.09 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 259 ? B -106.77 -67.57 2 1 ASN A 311 ? B 71.95 -0.23 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASN 214 ? CG ? A ASN 2 CG 2 1 Y 1 A ASN 214 ? OD1 ? A ASN 2 OD1 3 1 Y 1 A ASN 214 ? ND2 ? A ASN 2 ND2 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id SER _pdbx_unobs_or_zero_occ_residues.auth_seq_id 213 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id SER _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'SULFATE ION' SO4 4 water HOH #