data_3OKX # _entry.id 3OKX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3OKX RCSB RCSB061245 WWPDB D_1000061245 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC5921 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3OKX _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-08-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chang, C.' 1 'Evdokimova, E.' 2 'Liu, F.' 3 'Savchenko, A.' 4 'Edwards, A.' 5 'Joachimiak, A.' 6 'Midwest Center for Structural Genomics (MCSG)' 7 # _citation.id primary _citation.title 'Crystal structure of YaeB-like protein from Rhodopseudomonas palustris' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chang, C.' 1 primary 'Evdokimova, E.' 2 primary 'Liu, F.' 3 primary 'Savchenko, A.' 4 primary 'Edwards, A.' 5 primary 'Joachimiak, A.' 6 # _cell.length_a 74.317 _cell.length_b 74.317 _cell.length_c 116.817 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3OKX _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.entry_id 3OKX _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 152 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'YaeB-like protein RPA0152' 18926.131 2 ? ? ? ? 2 non-polymer syn S-ADENOSYLMETHIONINE 398.437 2 ? ? ? ? 3 water nat water 18.015 286 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GH(MSE)DATDDIRAGELASDWSGSPDAGVVFIGRIHTPWNRLKECPRHGRADGPVCRIEVFETWLPALAGIDDGTLLEV FYWLHRSRRDLLLQCPRNDGDARGTFSIRSPLRPNPIGTSIARVDRRDGANLFIRGLDCLDGTPLVDLKPDRAEF(MSE) PLAPPKPGDFQVGEPRR ; _entity_poly.pdbx_seq_one_letter_code_can ;GHMDATDDIRAGELASDWSGSPDAGVVFIGRIHTPWNRLKECPRHGRADGPVCRIEVFETWLPALAGIDDGTLLEVFYWL HRSRRDLLLQCPRNDGDARGTFSIRSPLRPNPIGTSIARVDRRDGANLFIRGLDCLDGTPLVDLKPDRAEFMPLAPPKPG DFQVGEPRR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC5921 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MSE n 1 4 ASP n 1 5 ALA n 1 6 THR n 1 7 ASP n 1 8 ASP n 1 9 ILE n 1 10 ARG n 1 11 ALA n 1 12 GLY n 1 13 GLU n 1 14 LEU n 1 15 ALA n 1 16 SER n 1 17 ASP n 1 18 TRP n 1 19 SER n 1 20 GLY n 1 21 SER n 1 22 PRO n 1 23 ASP n 1 24 ALA n 1 25 GLY n 1 26 VAL n 1 27 VAL n 1 28 PHE n 1 29 ILE n 1 30 GLY n 1 31 ARG n 1 32 ILE n 1 33 HIS n 1 34 THR n 1 35 PRO n 1 36 TRP n 1 37 ASN n 1 38 ARG n 1 39 LEU n 1 40 LYS n 1 41 GLU n 1 42 CYS n 1 43 PRO n 1 44 ARG n 1 45 HIS n 1 46 GLY n 1 47 ARG n 1 48 ALA n 1 49 ASP n 1 50 GLY n 1 51 PRO n 1 52 VAL n 1 53 CYS n 1 54 ARG n 1 55 ILE n 1 56 GLU n 1 57 VAL n 1 58 PHE n 1 59 GLU n 1 60 THR n 1 61 TRP n 1 62 LEU n 1 63 PRO n 1 64 ALA n 1 65 LEU n 1 66 ALA n 1 67 GLY n 1 68 ILE n 1 69 ASP n 1 70 ASP n 1 71 GLY n 1 72 THR n 1 73 LEU n 1 74 LEU n 1 75 GLU n 1 76 VAL n 1 77 PHE n 1 78 TYR n 1 79 TRP n 1 80 LEU n 1 81 HIS n 1 82 ARG n 1 83 SER n 1 84 ARG n 1 85 ARG n 1 86 ASP n 1 87 LEU n 1 88 LEU n 1 89 LEU n 1 90 GLN n 1 91 CYS n 1 92 PRO n 1 93 ARG n 1 94 ASN n 1 95 ASP n 1 96 GLY n 1 97 ASP n 1 98 ALA n 1 99 ARG n 1 100 GLY n 1 101 THR n 1 102 PHE n 1 103 SER n 1 104 ILE n 1 105 ARG n 1 106 SER n 1 107 PRO n 1 108 LEU n 1 109 ARG n 1 110 PRO n 1 111 ASN n 1 112 PRO n 1 113 ILE n 1 114 GLY n 1 115 THR n 1 116 SER n 1 117 ILE n 1 118 ALA n 1 119 ARG n 1 120 VAL n 1 121 ASP n 1 122 ARG n 1 123 ARG n 1 124 ASP n 1 125 GLY n 1 126 ALA n 1 127 ASN n 1 128 LEU n 1 129 PHE n 1 130 ILE n 1 131 ARG n 1 132 GLY n 1 133 LEU n 1 134 ASP n 1 135 CYS n 1 136 LEU n 1 137 ASP n 1 138 GLY n 1 139 THR n 1 140 PRO n 1 141 LEU n 1 142 VAL n 1 143 ASP n 1 144 LEU n 1 145 LYS n 1 146 PRO n 1 147 ASP n 1 148 ARG n 1 149 ALA n 1 150 GLU n 1 151 PHE n 1 152 MSE n 1 153 PRO n 1 154 LEU n 1 155 ALA n 1 156 PRO n 1 157 PRO n 1 158 LYS n 1 159 PRO n 1 160 GLY n 1 161 ASP n 1 162 PHE n 1 163 GLN n 1 164 VAL n 1 165 GLY n 1 166 GLU n 1 167 PRO n 1 168 ARG n 1 169 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene RPA0152 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain CGA009 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rhodopseudomonas palustris' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 258594 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)gold' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET derivative' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6NDF6_RHOPA _struct_ref.pdbx_db_accession Q6NDF6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDATDDIRAGELASDWSGSPDAGVVFIGRIHTPWNRLKECPRHGRADGPVCRIEVFETWLPALAGIDDGTLLEVFYWLHR SRRDLLLQCPRNDGDARGTFSIRSPLRPNPIGTSIARVDRRDGANLFIRGLDCLDGTPLVDLKPDRAEFMPLAPPKPGDF QVGEPRR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3OKX A 3 ? 169 ? Q6NDF6 1 ? 167 ? 1 167 2 1 3OKX B 3 ? 169 ? Q6NDF6 1 ? 167 ? 1 167 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3OKX GLY A 1 ? UNP Q6NDF6 ? ? 'expression tag' -1 1 1 3OKX HIS A 2 ? UNP Q6NDF6 ? ? 'expression tag' 0 2 2 3OKX GLY B 1 ? UNP Q6NDF6 ? ? 'expression tag' -1 3 2 3OKX HIS B 2 ? UNP Q6NDF6 ? ? 'expression tag' 0 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SAM non-polymer . S-ADENOSYLMETHIONINE ? 'C15 H22 N6 O5 S' 398.437 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3OKX _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.46 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.00 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.2M di-sodium tartrate, 20% PEG3350, VAPOR DIFFUSION, HANGING DROP, temperature 297K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-04-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si(111) double crystal' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97935 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97935 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3OKX _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 1.80 _reflns.d_resolution_low 50 _reflns.number_all 35236 _reflns.number_obs 35229 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 44.0 _reflns.B_iso_Wilson_estimate 22.7 _reflns.pdbx_redundancy 10.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.83 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.542 _reflns_shell.meanI_over_sigI_obs 5.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 11.0 _reflns_shell.number_unique_all 1690 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3OKX _refine.ls_d_res_high 1.8000 _refine.ls_d_res_low 50 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.6600 _refine.ls_number_reflns_obs 35078 _refine.ls_number_reflns_all 35078 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED' _refine.ls_R_factor_all 0.1487 _refine.ls_R_factor_obs 0.1487 _refine.ls_R_factor_R_work 0.1469 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1819 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 1761 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 23.1136 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.6300 _refine.aniso_B[2][2] 0.6300 _refine.aniso_B[3][3] -0.9500 _refine.aniso_B[1][2] 0.3200 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9690 _refine.correlation_coeff_Fo_to_Fc_free 0.9570 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.0970 _refine.overall_SU_ML 0.0540 _refine.overall_SU_B 3.7460 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 133.800 _refine.B_iso_min 10.180 _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2388 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.number_atoms_solvent 286 _refine_hist.number_atoms_total 2728 _refine_hist.d_res_high 1.8000 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2583 0.014 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3528 1.468 1.996 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 317 6.394 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 122 29.699 21.803 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 392 11.954 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 35 14.738 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 374 0.103 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2046 0.008 0.022 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1581 1.115 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2554 1.879 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1002 2.963 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 974 4.479 4.500 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2583 1.465 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.8010 _refine_ls_shell.d_res_low 1.8480 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.5300 _refine_ls_shell.number_reflns_R_work 2420 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.1810 _refine_ls_shell.R_factor_R_free 0.2570 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 114 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2534 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3OKX _struct.title 'Crystal structure of YaeB-like protein from Rhodopseudomonas palustris' _struct.pdbx_descriptor 'YaeB-like protein RPA0152' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3OKX _struct_keywords.pdbx_keywords 'structural genomics, unknown function' _struct_keywords.text 'PSI-2, Midwest Center for Structural Genomics, Protein Structure Initiative, MCSG, unknown function, structural genomics' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 38 ? CYS A 42 ? ARG A 36 CYS A 40 5 ? 5 HELX_P HELX_P2 2 GLU A 59 ? ALA A 66 ? GLU A 57 ALA A 64 5 ? 8 HELX_P HELX_P3 3 PHE A 102 ? ILE A 104 ? PHE A 100 ILE A 102 5 ? 3 HELX_P HELX_P4 4 ARG A 148 ? PHE A 151 ? ARG A 146 PHE A 149 5 ? 4 HELX_P HELX_P5 5 LYS A 158 ? GLN A 163 ? LYS A 156 GLN A 161 5 ? 6 HELX_P HELX_P6 6 ARG B 38 ? CYS B 42 ? ARG B 36 CYS B 40 5 ? 5 HELX_P HELX_P7 7 GLU B 59 ? ALA B 66 ? GLU B 57 ALA B 64 5 ? 8 HELX_P HELX_P8 8 PHE B 102 ? ILE B 104 ? PHE B 100 ILE B 102 5 ? 3 HELX_P HELX_P9 9 ASP B 147 ? MSE B 152 ? ASP B 145 MSE B 150 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A PHE 151 C ? ? ? 1_555 A MSE 152 N ? ? A PHE 149 A MSE 150 1_555 ? ? ? ? ? ? ? 1.324 ? covale2 covale ? ? A MSE 152 C ? ? ? 1_555 A PRO 153 N ? ? A MSE 150 A PRO 151 1_555 ? ? ? ? ? ? ? 1.341 ? covale3 covale ? ? B PHE 151 C ? ? ? 1_555 B MSE 152 N ? ? B PHE 149 B MSE 150 1_555 ? ? ? ? ? ? ? 1.324 ? covale4 covale ? ? B MSE 152 C ? ? ? 1_555 B PRO 153 N ? ? B MSE 150 B PRO 151 1_555 ? ? ? ? ? ? ? 1.360 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? C ? 7 ? D ? 3 ? E ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel E 5 6 ? anti-parallel E 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 14 ? ALA A 15 ? LEU A 12 ALA A 13 A 2 LEU A 87 ? GLN A 90 ? LEU A 85 GLN A 88 A 3 ARG A 99 ? GLY A 100 ? ARG A 97 GLY A 98 B 1 ALA A 24 ? VAL A 26 ? ALA A 22 VAL A 24 B 2 ALA B 24 ? VAL B 26 ? ALA B 22 VAL B 24 C 1 GLY A 30 ? HIS A 33 ? GLY A 28 HIS A 31 C 2 CYS A 53 ? VAL A 57 ? CYS A 51 VAL A 55 C 3 ASN A 127 ? ILE A 130 ? ASN A 125 ILE A 128 C 4 ILE A 113 ? ASP A 124 ? ILE A 111 ASP A 122 C 5 LEU A 73 ? TRP A 79 ? LEU A 71 TRP A 77 C 6 THR A 139 ? PRO A 146 ? THR A 137 PRO A 144 C 7 GLY A 30 ? HIS A 33 ? GLY A 28 HIS A 31 D 1 LEU B 14 ? ALA B 15 ? LEU B 12 ALA B 13 D 2 LEU B 87 ? GLN B 90 ? LEU B 85 GLN B 88 D 3 ARG B 99 ? GLY B 100 ? ARG B 97 GLY B 98 E 1 GLY B 30 ? HIS B 33 ? GLY B 28 HIS B 31 E 2 VAL B 52 ? VAL B 57 ? VAL B 50 VAL B 55 E 3 ASN B 127 ? ARG B 131 ? ASN B 125 ARG B 129 E 4 ILE B 113 ? ASP B 124 ? ILE B 111 ASP B 122 E 5 LEU B 73 ? TRP B 79 ? LEU B 71 TRP B 77 E 6 THR B 139 ? PRO B 146 ? THR B 137 PRO B 144 E 7 GLY B 30 ? HIS B 33 ? GLY B 28 HIS B 31 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 14 ? N LEU A 12 O LEU A 88 ? O LEU A 86 A 2 3 N GLN A 90 ? N GLN A 88 O ARG A 99 ? O ARG A 97 B 1 2 N ALA A 24 ? N ALA A 22 O VAL B 26 ? O VAL B 24 C 1 2 N HIS A 33 ? N HIS A 31 O ARG A 54 ? O ARG A 52 C 2 3 N ILE A 55 ? N ILE A 53 O LEU A 128 ? O LEU A 126 C 3 4 O PHE A 129 ? O PHE A 127 N ARG A 122 ? N ARG A 120 C 4 5 O SER A 116 ? O SER A 114 N VAL A 76 ? N VAL A 74 C 5 6 N GLU A 75 ? N GLU A 73 O LYS A 145 ? O LYS A 143 C 6 7 O THR A 139 ? O THR A 137 N ILE A 32 ? N ILE A 30 D 1 2 N LEU B 14 ? N LEU B 12 O LEU B 88 ? O LEU B 86 D 2 3 N GLN B 90 ? N GLN B 88 O ARG B 99 ? O ARG B 97 E 1 2 N HIS B 33 ? N HIS B 31 O ARG B 54 ? O ARG B 52 E 2 3 N CYS B 53 ? N CYS B 51 O ILE B 130 ? O ILE B 128 E 3 4 O PHE B 129 ? O PHE B 127 N ARG B 122 ? N ARG B 120 E 4 5 O SER B 116 ? O SER B 114 N VAL B 76 ? N VAL B 74 E 5 6 N GLU B 75 ? N GLU B 73 O LYS B 145 ? O LYS B 143 E 6 7 O THR B 139 ? O THR B 137 N ILE B 32 ? N ILE B 30 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 22 'BINDING SITE FOR RESIDUE SAM A 201' AC2 Software ? ? ? ? 23 'BINDING SITE FOR RESIDUE SAM B 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 22 LEU A 39 ? LEU A 37 . ? 1_555 ? 2 AC1 22 CYS A 42 ? CYS A 40 . ? 1_555 ? 3 AC1 22 PRO A 43 ? PRO A 41 . ? 1_555 ? 4 AC1 22 ARG A 44 ? ARG A 42 . ? 1_555 ? 5 AC1 22 HIS A 45 ? HIS A 43 . ? 1_555 ? 6 AC1 22 TYR A 78 ? TYR A 76 . ? 1_555 ? 7 AC1 22 LEU A 80 ? LEU A 78 . ? 1_555 ? 8 AC1 22 HIS A 81 ? HIS A 79 . ? 1_555 ? 9 AC1 22 ARG A 82 ? ARG A 80 . ? 1_555 ? 10 AC1 22 SER A 83 ? SER A 81 . ? 1_555 ? 11 AC1 22 ARG A 105 ? ARG A 103 . ? 1_555 ? 12 AC1 22 PRO A 107 ? PRO A 105 . ? 1_555 ? 13 AC1 22 GLY A 114 ? GLY A 112 . ? 1_555 ? 14 AC1 22 THR A 115 ? THR A 113 . ? 1_555 ? 15 AC1 22 ASP A 134 ? ASP A 132 . ? 1_555 ? 16 AC1 22 CYS A 135 ? CYS A 133 . ? 1_555 ? 17 AC1 22 LEU A 136 ? LEU A 134 . ? 1_555 ? 18 AC1 22 THR A 139 ? THR A 137 . ? 1_555 ? 19 AC1 22 HOH E . ? HOH A 168 . ? 1_555 ? 20 AC1 22 HOH E . ? HOH A 216 . ? 1_555 ? 21 AC1 22 HOH E . ? HOH A 235 . ? 1_555 ? 22 AC1 22 HOH E . ? HOH A 260 . ? 1_555 ? 23 AC2 23 ARG A 148 ? ARG A 146 . ? 1_555 ? 24 AC2 23 LYS A 158 ? LYS A 156 . ? 1_555 ? 25 AC2 23 HOH E . ? HOH A 224 . ? 1_555 ? 26 AC2 23 LEU B 39 ? LEU B 37 . ? 1_555 ? 27 AC2 23 CYS B 42 ? CYS B 40 . ? 1_555 ? 28 AC2 23 PRO B 43 ? PRO B 41 . ? 1_555 ? 29 AC2 23 ARG B 44 ? ARG B 42 . ? 1_555 ? 30 AC2 23 HIS B 45 ? HIS B 43 . ? 1_555 ? 31 AC2 23 TYR B 78 ? TYR B 76 . ? 1_555 ? 32 AC2 23 LEU B 80 ? LEU B 78 . ? 1_555 ? 33 AC2 23 HIS B 81 ? HIS B 79 . ? 1_555 ? 34 AC2 23 ARG B 82 ? ARG B 80 . ? 1_555 ? 35 AC2 23 SER B 83 ? SER B 81 . ? 1_555 ? 36 AC2 23 ARG B 105 ? ARG B 103 . ? 1_555 ? 37 AC2 23 PRO B 107 ? PRO B 105 . ? 1_555 ? 38 AC2 23 GLY B 114 ? GLY B 112 . ? 1_555 ? 39 AC2 23 THR B 115 ? THR B 113 . ? 1_555 ? 40 AC2 23 ASP B 134 ? ASP B 132 . ? 1_555 ? 41 AC2 23 CYS B 135 ? CYS B 133 . ? 1_555 ? 42 AC2 23 LEU B 136 ? LEU B 134 . ? 1_555 ? 43 AC2 23 THR B 139 ? THR B 137 . ? 1_555 ? 44 AC2 23 HOH F . ? HOH B 191 . ? 1_555 ? 45 AC2 23 HOH F . ? HOH B 216 . ? 1_555 ? # _atom_sites.entry_id 3OKX _atom_sites.fract_transf_matrix[1][1] 0.013456 _atom_sites.fract_transf_matrix[1][2] 0.007769 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015538 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008560 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 HIS 2 0 ? ? ? A . n A 1 3 MSE 3 1 ? ? ? A . n A 1 4 ASP 4 2 ? ? ? A . n A 1 5 ALA 5 3 ? ? ? A . n A 1 6 THR 6 4 ? ? ? A . n A 1 7 ASP 7 5 ? ? ? A . n A 1 8 ASP 8 6 6 ASP ASP A . n A 1 9 ILE 9 7 7 ILE ILE A . n A 1 10 ARG 10 8 8 ARG ARG A . n A 1 11 ALA 11 9 9 ALA ALA A . n A 1 12 GLY 12 10 10 GLY GLY A . n A 1 13 GLU 13 11 11 GLU GLU A . n A 1 14 LEU 14 12 12 LEU LEU A . n A 1 15 ALA 15 13 13 ALA ALA A . n A 1 16 SER 16 14 14 SER SER A . n A 1 17 ASP 17 15 15 ASP ASP A . n A 1 18 TRP 18 16 16 TRP TRP A . n A 1 19 SER 19 17 17 SER SER A . n A 1 20 GLY 20 18 18 GLY GLY A . n A 1 21 SER 21 19 19 SER SER A . n A 1 22 PRO 22 20 20 PRO PRO A . n A 1 23 ASP 23 21 21 ASP ASP A . n A 1 24 ALA 24 22 22 ALA ALA A . n A 1 25 GLY 25 23 23 GLY GLY A . n A 1 26 VAL 26 24 24 VAL VAL A . n A 1 27 VAL 27 25 25 VAL VAL A . n A 1 28 PHE 28 26 26 PHE PHE A . n A 1 29 ILE 29 27 27 ILE ILE A . n A 1 30 GLY 30 28 28 GLY GLY A . n A 1 31 ARG 31 29 29 ARG ARG A . n A 1 32 ILE 32 30 30 ILE ILE A . n A 1 33 HIS 33 31 31 HIS HIS A . n A 1 34 THR 34 32 32 THR THR A . n A 1 35 PRO 35 33 33 PRO PRO A . n A 1 36 TRP 36 34 34 TRP TRP A . n A 1 37 ASN 37 35 35 ASN ASN A . n A 1 38 ARG 38 36 36 ARG ARG A . n A 1 39 LEU 39 37 37 LEU LEU A . n A 1 40 LYS 40 38 38 LYS LYS A . n A 1 41 GLU 41 39 39 GLU GLU A . n A 1 42 CYS 42 40 40 CYS CYS A . n A 1 43 PRO 43 41 41 PRO PRO A . n A 1 44 ARG 44 42 42 ARG ARG A . n A 1 45 HIS 45 43 43 HIS HIS A . n A 1 46 GLY 46 44 44 GLY GLY A . n A 1 47 ARG 47 45 45 ARG ARG A . n A 1 48 ALA 48 46 46 ALA ALA A . n A 1 49 ASP 49 47 47 ASP ASP A . n A 1 50 GLY 50 48 48 GLY GLY A . n A 1 51 PRO 51 49 49 PRO PRO A . n A 1 52 VAL 52 50 50 VAL VAL A . n A 1 53 CYS 53 51 51 CYS CYS A . n A 1 54 ARG 54 52 52 ARG ARG A . n A 1 55 ILE 55 53 53 ILE ILE A . n A 1 56 GLU 56 54 54 GLU GLU A . n A 1 57 VAL 57 55 55 VAL VAL A . n A 1 58 PHE 58 56 56 PHE PHE A . n A 1 59 GLU 59 57 57 GLU GLU A . n A 1 60 THR 60 58 58 THR THR A . n A 1 61 TRP 61 59 59 TRP TRP A . n A 1 62 LEU 62 60 60 LEU LEU A . n A 1 63 PRO 63 61 61 PRO PRO A . n A 1 64 ALA 64 62 62 ALA ALA A . n A 1 65 LEU 65 63 63 LEU LEU A . n A 1 66 ALA 66 64 64 ALA ALA A . n A 1 67 GLY 67 65 65 GLY GLY A . n A 1 68 ILE 68 66 66 ILE ILE A . n A 1 69 ASP 69 67 67 ASP ASP A . n A 1 70 ASP 70 68 68 ASP ASP A . n A 1 71 GLY 71 69 69 GLY GLY A . n A 1 72 THR 72 70 70 THR THR A . n A 1 73 LEU 73 71 71 LEU LEU A . n A 1 74 LEU 74 72 72 LEU LEU A . n A 1 75 GLU 75 73 73 GLU GLU A . n A 1 76 VAL 76 74 74 VAL VAL A . n A 1 77 PHE 77 75 75 PHE PHE A . n A 1 78 TYR 78 76 76 TYR TYR A . n A 1 79 TRP 79 77 77 TRP TRP A . n A 1 80 LEU 80 78 78 LEU LEU A . n A 1 81 HIS 81 79 79 HIS HIS A . n A 1 82 ARG 82 80 80 ARG ARG A . n A 1 83 SER 83 81 81 SER SER A . n A 1 84 ARG 84 82 82 ARG ARG A . n A 1 85 ARG 85 83 83 ARG ARG A . n A 1 86 ASP 86 84 84 ASP ASP A . n A 1 87 LEU 87 85 85 LEU LEU A . n A 1 88 LEU 88 86 86 LEU LEU A . n A 1 89 LEU 89 87 87 LEU LEU A . n A 1 90 GLN 90 88 88 GLN GLN A . n A 1 91 CYS 91 89 89 CYS CYS A . n A 1 92 PRO 92 90 90 PRO PRO A . n A 1 93 ARG 93 91 ? ? ? A . n A 1 94 ASN 94 92 ? ? ? A . n A 1 95 ASP 95 93 ? ? ? A . n A 1 96 GLY 96 94 94 GLY GLY A . n A 1 97 ASP 97 95 95 ASP ASP A . n A 1 98 ALA 98 96 96 ALA ALA A . n A 1 99 ARG 99 97 97 ARG ARG A . n A 1 100 GLY 100 98 98 GLY GLY A . n A 1 101 THR 101 99 99 THR THR A . n A 1 102 PHE 102 100 100 PHE PHE A . n A 1 103 SER 103 101 101 SER SER A . n A 1 104 ILE 104 102 102 ILE ILE A . n A 1 105 ARG 105 103 103 ARG ARG A . n A 1 106 SER 106 104 104 SER SER A . n A 1 107 PRO 107 105 105 PRO PRO A . n A 1 108 LEU 108 106 106 LEU LEU A . n A 1 109 ARG 109 107 107 ARG ARG A . n A 1 110 PRO 110 108 108 PRO PRO A . n A 1 111 ASN 111 109 109 ASN ASN A . n A 1 112 PRO 112 110 110 PRO PRO A . n A 1 113 ILE 113 111 111 ILE ILE A . n A 1 114 GLY 114 112 112 GLY GLY A . n A 1 115 THR 115 113 113 THR THR A . n A 1 116 SER 116 114 114 SER SER A . n A 1 117 ILE 117 115 115 ILE ILE A . n A 1 118 ALA 118 116 116 ALA ALA A . n A 1 119 ARG 119 117 117 ARG ARG A . n A 1 120 VAL 120 118 118 VAL VAL A . n A 1 121 ASP 121 119 119 ASP ASP A . n A 1 122 ARG 122 120 120 ARG ARG A . n A 1 123 ARG 123 121 121 ARG ARG A . n A 1 124 ASP 124 122 122 ASP ASP A . n A 1 125 GLY 125 123 123 GLY GLY A . n A 1 126 ALA 126 124 124 ALA ALA A . n A 1 127 ASN 127 125 125 ASN ASN A . n A 1 128 LEU 128 126 126 LEU LEU A . n A 1 129 PHE 129 127 127 PHE PHE A . n A 1 130 ILE 130 128 128 ILE ILE A . n A 1 131 ARG 131 129 129 ARG ARG A . n A 1 132 GLY 132 130 130 GLY GLY A . n A 1 133 LEU 133 131 131 LEU LEU A . n A 1 134 ASP 134 132 132 ASP ASP A . n A 1 135 CYS 135 133 133 CYS CYS A . n A 1 136 LEU 136 134 134 LEU LEU A . n A 1 137 ASP 137 135 135 ASP ASP A . n A 1 138 GLY 138 136 136 GLY GLY A . n A 1 139 THR 139 137 137 THR THR A . n A 1 140 PRO 140 138 138 PRO PRO A . n A 1 141 LEU 141 139 139 LEU LEU A . n A 1 142 VAL 142 140 140 VAL VAL A . n A 1 143 ASP 143 141 141 ASP ASP A . n A 1 144 LEU 144 142 142 LEU LEU A . n A 1 145 LYS 145 143 143 LYS LYS A . n A 1 146 PRO 146 144 144 PRO PRO A . n A 1 147 ASP 147 145 145 ASP ASP A . n A 1 148 ARG 148 146 146 ARG ARG A . n A 1 149 ALA 149 147 147 ALA ALA A . n A 1 150 GLU 150 148 148 GLU GLU A . n A 1 151 PHE 151 149 149 PHE PHE A . n A 1 152 MSE 152 150 150 MSE MSE A . n A 1 153 PRO 153 151 151 PRO PRO A . n A 1 154 LEU 154 152 152 LEU LEU A . n A 1 155 ALA 155 153 153 ALA ALA A . n A 1 156 PRO 156 154 154 PRO PRO A . n A 1 157 PRO 157 155 155 PRO PRO A . n A 1 158 LYS 158 156 156 LYS LYS A . n A 1 159 PRO 159 157 157 PRO PRO A . n A 1 160 GLY 160 158 158 GLY GLY A . n A 1 161 ASP 161 159 159 ASP ASP A . n A 1 162 PHE 162 160 160 PHE PHE A . n A 1 163 GLN 163 161 161 GLN GLN A . n A 1 164 VAL 164 162 162 VAL VAL A . n A 1 165 GLY 165 163 163 GLY GLY A . n A 1 166 GLU 166 164 164 GLU GLU A . n A 1 167 PRO 167 165 ? ? ? A . n A 1 168 ARG 168 166 ? ? ? A . n A 1 169 ARG 169 167 ? ? ? A . n B 1 1 GLY 1 -1 ? ? ? B . n B 1 2 HIS 2 0 ? ? ? B . n B 1 3 MSE 3 1 ? ? ? B . n B 1 4 ASP 4 2 ? ? ? B . n B 1 5 ALA 5 3 3 ALA ALA B . n B 1 6 THR 6 4 4 THR THR B . n B 1 7 ASP 7 5 5 ASP ASP B . n B 1 8 ASP 8 6 6 ASP ASP B . n B 1 9 ILE 9 7 7 ILE ILE B . n B 1 10 ARG 10 8 8 ARG ARG B . n B 1 11 ALA 11 9 9 ALA ALA B . n B 1 12 GLY 12 10 10 GLY GLY B . n B 1 13 GLU 13 11 11 GLU GLU B . n B 1 14 LEU 14 12 12 LEU LEU B . n B 1 15 ALA 15 13 13 ALA ALA B . n B 1 16 SER 16 14 14 SER SER B . n B 1 17 ASP 17 15 15 ASP ASP B . n B 1 18 TRP 18 16 16 TRP TRP B . n B 1 19 SER 19 17 17 SER SER B . n B 1 20 GLY 20 18 18 GLY GLY B . n B 1 21 SER 21 19 19 SER SER B . n B 1 22 PRO 22 20 20 PRO PRO B . n B 1 23 ASP 23 21 21 ASP ASP B . n B 1 24 ALA 24 22 22 ALA ALA B . n B 1 25 GLY 25 23 23 GLY GLY B . n B 1 26 VAL 26 24 24 VAL VAL B . n B 1 27 VAL 27 25 25 VAL VAL B . n B 1 28 PHE 28 26 26 PHE PHE B . n B 1 29 ILE 29 27 27 ILE ILE B . n B 1 30 GLY 30 28 28 GLY GLY B . n B 1 31 ARG 31 29 29 ARG ARG B . n B 1 32 ILE 32 30 30 ILE ILE B . n B 1 33 HIS 33 31 31 HIS HIS B . n B 1 34 THR 34 32 32 THR THR B . n B 1 35 PRO 35 33 33 PRO PRO B . n B 1 36 TRP 36 34 34 TRP TRP B . n B 1 37 ASN 37 35 35 ASN ASN B . n B 1 38 ARG 38 36 36 ARG ARG B . n B 1 39 LEU 39 37 37 LEU LEU B . n B 1 40 LYS 40 38 38 LYS LYS B . n B 1 41 GLU 41 39 39 GLU GLU B . n B 1 42 CYS 42 40 40 CYS CYS B . n B 1 43 PRO 43 41 41 PRO PRO B . n B 1 44 ARG 44 42 42 ARG ARG B . n B 1 45 HIS 45 43 43 HIS HIS B . n B 1 46 GLY 46 44 44 GLY GLY B . n B 1 47 ARG 47 45 45 ARG ARG B . n B 1 48 ALA 48 46 46 ALA ALA B . n B 1 49 ASP 49 47 47 ASP ASP B . n B 1 50 GLY 50 48 48 GLY GLY B . n B 1 51 PRO 51 49 49 PRO PRO B . n B 1 52 VAL 52 50 50 VAL VAL B . n B 1 53 CYS 53 51 51 CYS CYS B . n B 1 54 ARG 54 52 52 ARG ARG B . n B 1 55 ILE 55 53 53 ILE ILE B . n B 1 56 GLU 56 54 54 GLU GLU B . n B 1 57 VAL 57 55 55 VAL VAL B . n B 1 58 PHE 58 56 56 PHE PHE B . n B 1 59 GLU 59 57 57 GLU GLU B . n B 1 60 THR 60 58 58 THR THR B . n B 1 61 TRP 61 59 59 TRP TRP B . n B 1 62 LEU 62 60 60 LEU LEU B . n B 1 63 PRO 63 61 61 PRO PRO B . n B 1 64 ALA 64 62 62 ALA ALA B . n B 1 65 LEU 65 63 63 LEU LEU B . n B 1 66 ALA 66 64 64 ALA ALA B . n B 1 67 GLY 67 65 65 GLY GLY B . n B 1 68 ILE 68 66 66 ILE ILE B . n B 1 69 ASP 69 67 67 ASP ASP B . n B 1 70 ASP 70 68 68 ASP ASP B . n B 1 71 GLY 71 69 69 GLY GLY B . n B 1 72 THR 72 70 70 THR THR B . n B 1 73 LEU 73 71 71 LEU LEU B . n B 1 74 LEU 74 72 72 LEU LEU B . n B 1 75 GLU 75 73 73 GLU GLU B . n B 1 76 VAL 76 74 74 VAL VAL B . n B 1 77 PHE 77 75 75 PHE PHE B . n B 1 78 TYR 78 76 76 TYR TYR B . n B 1 79 TRP 79 77 77 TRP TRP B . n B 1 80 LEU 80 78 78 LEU LEU B . n B 1 81 HIS 81 79 79 HIS HIS B . n B 1 82 ARG 82 80 80 ARG ARG B . n B 1 83 SER 83 81 81 SER SER B . n B 1 84 ARG 84 82 82 ARG ARG B . n B 1 85 ARG 85 83 83 ARG ARG B . n B 1 86 ASP 86 84 84 ASP ASP B . n B 1 87 LEU 87 85 85 LEU LEU B . n B 1 88 LEU 88 86 86 LEU LEU B . n B 1 89 LEU 89 87 87 LEU LEU B . n B 1 90 GLN 90 88 88 GLN GLN B . n B 1 91 CYS 91 89 89 CYS CYS B . n B 1 92 PRO 92 90 90 PRO PRO B . n B 1 93 ARG 93 91 91 ARG ARG B . n B 1 94 ASN 94 92 92 ASN ASN B . n B 1 95 ASP 95 93 93 ASP ASP B . n B 1 96 GLY 96 94 94 GLY GLY B . n B 1 97 ASP 97 95 95 ASP ASP B . n B 1 98 ALA 98 96 96 ALA ALA B . n B 1 99 ARG 99 97 97 ARG ARG B . n B 1 100 GLY 100 98 98 GLY GLY B . n B 1 101 THR 101 99 99 THR THR B . n B 1 102 PHE 102 100 100 PHE PHE B . n B 1 103 SER 103 101 101 SER SER B . n B 1 104 ILE 104 102 102 ILE ILE B . n B 1 105 ARG 105 103 103 ARG ARG B . n B 1 106 SER 106 104 104 SER SER B . n B 1 107 PRO 107 105 105 PRO PRO B . n B 1 108 LEU 108 106 106 LEU LEU B . n B 1 109 ARG 109 107 107 ARG ARG B . n B 1 110 PRO 110 108 108 PRO PRO B . n B 1 111 ASN 111 109 109 ASN ASN B . n B 1 112 PRO 112 110 110 PRO PRO B . n B 1 113 ILE 113 111 111 ILE ILE B . n B 1 114 GLY 114 112 112 GLY GLY B . n B 1 115 THR 115 113 113 THR THR B . n B 1 116 SER 116 114 114 SER SER B . n B 1 117 ILE 117 115 115 ILE ILE B . n B 1 118 ALA 118 116 116 ALA ALA B . n B 1 119 ARG 119 117 117 ARG ARG B . n B 1 120 VAL 120 118 118 VAL VAL B . n B 1 121 ASP 121 119 119 ASP ASP B . n B 1 122 ARG 122 120 120 ARG ARG B . n B 1 123 ARG 123 121 121 ARG ARG B . n B 1 124 ASP 124 122 122 ASP ASP B . n B 1 125 GLY 125 123 123 GLY GLY B . n B 1 126 ALA 126 124 124 ALA ALA B . n B 1 127 ASN 127 125 125 ASN ASN B . n B 1 128 LEU 128 126 126 LEU LEU B . n B 1 129 PHE 129 127 127 PHE PHE B . n B 1 130 ILE 130 128 128 ILE ILE B . n B 1 131 ARG 131 129 129 ARG ARG B . n B 1 132 GLY 132 130 130 GLY GLY B . n B 1 133 LEU 133 131 131 LEU LEU B . n B 1 134 ASP 134 132 132 ASP ASP B . n B 1 135 CYS 135 133 133 CYS CYS B . n B 1 136 LEU 136 134 134 LEU LEU B . n B 1 137 ASP 137 135 135 ASP ASP B . n B 1 138 GLY 138 136 136 GLY GLY B . n B 1 139 THR 139 137 137 THR THR B . n B 1 140 PRO 140 138 138 PRO PRO B . n B 1 141 LEU 141 139 139 LEU LEU B . n B 1 142 VAL 142 140 140 VAL VAL B . n B 1 143 ASP 143 141 141 ASP ASP B . n B 1 144 LEU 144 142 142 LEU LEU B . n B 1 145 LYS 145 143 143 LYS LYS B . n B 1 146 PRO 146 144 144 PRO PRO B . n B 1 147 ASP 147 145 145 ASP ASP B . n B 1 148 ARG 148 146 146 ARG ARG B . n B 1 149 ALA 149 147 147 ALA ALA B . n B 1 150 GLU 150 148 148 GLU GLU B . n B 1 151 PHE 151 149 149 PHE PHE B . n B 1 152 MSE 152 150 150 MSE MSE B . n B 1 153 PRO 153 151 151 PRO PRO B . n B 1 154 LEU 154 152 ? ? ? B . n B 1 155 ALA 155 153 ? ? ? B . n B 1 156 PRO 156 154 ? ? ? B . n B 1 157 PRO 157 155 ? ? ? B . n B 1 158 LYS 158 156 ? ? ? B . n B 1 159 PRO 159 157 ? ? ? B . n B 1 160 GLY 160 158 ? ? ? B . n B 1 161 ASP 161 159 ? ? ? B . n B 1 162 PHE 162 160 ? ? ? B . n B 1 163 GLN 163 161 ? ? ? B . n B 1 164 VAL 164 162 ? ? ? B . n B 1 165 GLY 165 163 ? ? ? B . n B 1 166 GLU 166 164 ? ? ? B . n B 1 167 PRO 167 165 ? ? ? B . n B 1 168 ARG 168 166 ? ? ? B . n B 1 169 ARG 169 167 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 152 A MSE 150 ? MET SELENOMETHIONINE 2 B MSE 152 B MSE 150 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6200 ? 1 MORE -24 ? 1 'SSA (A^2)' 13650 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-08 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 25.2503 -3.9224 -0.9224 0.1770 0.1468 0.0444 0.0699 -0.0412 0.0379 6.2653 0.7659 4.7139 -0.3758 -4.7630 0.6111 0.3360 -0.0669 -0.2691 0.7623 0.3110 0.0552 -0.2843 -0.3471 -0.7295 'X-RAY DIFFRACTION' 2 ? refined 28.9955 7.2283 21.0318 0.0786 0.0703 0.0779 0.0172 0.0126 0.0059 1.2471 1.6352 1.3801 0.3755 -0.1647 0.3971 0.0232 0.0349 -0.0581 0.0355 0.0751 -0.0492 -0.1419 -0.1569 -0.0408 'X-RAY DIFFRACTION' 3 ? refined 32.9099 -2.2758 3.6287 0.1412 0.0832 0.0599 0.0107 0.0142 0.0098 1.5346 2.0749 2.8753 -1.0672 -0.9830 0.6767 0.0666 0.0080 -0.0746 0.0417 0.1113 -0.1281 -0.1993 -0.2996 -0.0070 'X-RAY DIFFRACTION' 4 ? refined 30.4999 5.3240 24.2314 0.0805 0.0836 0.0994 0.0175 0.0047 -0.0001 0.8287 1.2883 1.1445 0.2207 0.0331 0.3614 0.0610 0.0248 -0.0858 -0.0038 0.0266 -0.1007 -0.0759 -0.0566 -0.0084 'X-RAY DIFFRACTION' 5 ? refined 30.3533 -19.8221 30.1615 0.1499 0.1664 0.1693 0.0066 -0.0214 0.0294 0.8970 2.0717 0.6031 0.9744 -0.2544 -0.0737 -0.0190 -0.0210 0.0400 0.0167 0.1054 -0.1072 -0.0193 0.0926 0.0090 'X-RAY DIFFRACTION' 6 ? refined 10.9792 -5.3283 25.0179 0.0131 0.2571 0.1195 -0.0214 -0.0103 -0.0039 0.6790 1.3917 7.5161 -0.4226 -0.5687 -1.8336 -0.0488 0.1537 -0.1049 0.0555 -0.0859 0.2344 -0.0244 0.1254 -1.1553 'X-RAY DIFFRACTION' 7 ? refined 29.0370 -18.6824 12.9357 0.0877 0.0815 0.0731 -0.0168 -0.0164 -0.0116 1.1620 0.9138 1.6361 0.0060 -0.5068 -0.4914 -0.0250 0.0142 0.0108 0.0074 -0.1077 0.0313 -0.1426 0.1697 -0.1079 'X-RAY DIFFRACTION' 8 ? refined 18.8019 -8.8443 28.2074 0.0600 0.1342 0.1098 -0.0141 -0.0011 0.0003 0.1298 0.9154 2.7160 0.0790 0.1024 -0.0222 0.0241 -0.0459 0.0218 -0.0012 -0.0395 0.0784 0.0763 0.0134 -0.1940 'X-RAY DIFFRACTION' 9 ? refined 32.9998 -17.7849 12.4805 0.1036 0.0857 0.0883 0.0032 -0.0088 -0.0096 1.5981 0.3782 1.2608 -0.3654 -0.5709 -0.3766 0.0008 -0.0040 0.0032 0.0215 -0.0390 0.0257 -0.0812 0.1496 -0.0336 'X-RAY DIFFRACTION' 10 ? refined 45.0465 -6.9726 14.1544 0.1017 0.2093 0.2971 -0.0729 -0.0686 -0.0947 20.6252 21.4658 11.4661 -7.9147 -3.0804 -13.0577 -0.4811 -0.1883 0.6694 -0.8309 1.0142 -1.4990 1.1508 -0.6895 0.5223 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 25 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 26 A 77 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 78 A 112 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 113 A 146 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 A 147 A 167 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 B 1 B 25 ? . . . . ? 'X-RAY DIFFRACTION' 7 7 B 26 B 77 ? . . . . ? 'X-RAY DIFFRACTION' 8 8 B 78 B 112 ? . . . . ? 'X-RAY DIFFRACTION' 9 9 B 113 B 146 ? . . . . ? 'X-RAY DIFFRACTION' 10 10 B 147 B 167 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 4 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 6 SHARP . ? ? ? ? phasing ? ? ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 238 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 239 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 6_555 _pdbx_validate_symm_contact.dist 2.16 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 52 ? ? CZ A ARG 52 ? ? NH1 A ARG 52 ? ? 123.85 120.30 3.55 0.50 N 2 1 NE A ARG 52 ? ? CZ A ARG 52 ? ? NH2 A ARG 52 ? ? 115.31 120.30 -4.99 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 15 ? ? -104.33 46.20 2 1 ASP A 15 ? ? -105.21 46.20 3 1 ASP A 132 ? ? -143.90 18.01 4 1 THR B 4 ? ? -59.41 3.24 5 1 SER B 17 ? ? -146.50 54.57 6 1 ASP B 132 ? ? -143.40 19.73 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A HIS 0 ? A HIS 2 3 1 Y 1 A MSE 1 ? A MSE 3 4 1 Y 1 A ASP 2 ? A ASP 4 5 1 Y 1 A ALA 3 ? A ALA 5 6 1 Y 1 A THR 4 ? A THR 6 7 1 Y 1 A ASP 5 ? A ASP 7 8 1 Y 1 A ARG 91 ? A ARG 93 9 1 Y 1 A ASN 92 ? A ASN 94 10 1 Y 1 A ASP 93 ? A ASP 95 11 1 Y 1 A PRO 165 ? A PRO 167 12 1 Y 1 A ARG 166 ? A ARG 168 13 1 Y 1 A ARG 167 ? A ARG 169 14 1 Y 1 B GLY -1 ? B GLY 1 15 1 Y 1 B HIS 0 ? B HIS 2 16 1 Y 1 B MSE 1 ? B MSE 3 17 1 Y 1 B ASP 2 ? B ASP 4 18 1 Y 1 B LEU 152 ? B LEU 154 19 1 Y 1 B ALA 153 ? B ALA 155 20 1 Y 1 B PRO 154 ? B PRO 156 21 1 Y 1 B PRO 155 ? B PRO 157 22 1 Y 1 B LYS 156 ? B LYS 158 23 1 Y 1 B PRO 157 ? B PRO 159 24 1 Y 1 B GLY 158 ? B GLY 160 25 1 Y 1 B ASP 159 ? B ASP 161 26 1 Y 1 B PHE 160 ? B PHE 162 27 1 Y 1 B GLN 161 ? B GLN 163 28 1 Y 1 B VAL 162 ? B VAL 164 29 1 Y 1 B GLY 163 ? B GLY 165 30 1 Y 1 B GLU 164 ? B GLU 166 31 1 Y 1 B PRO 165 ? B PRO 167 32 1 Y 1 B ARG 166 ? B ARG 168 33 1 Y 1 B ARG 167 ? B ARG 169 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 S-ADENOSYLMETHIONINE SAM 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAM 1 201 201 SAM SAM A . D 2 SAM 1 201 201 SAM SAM B . E 3 HOH 1 168 2 HOH HOH A . E 3 HOH 2 169 4 HOH HOH A . E 3 HOH 3 170 6 HOH HOH A . E 3 HOH 4 171 12 HOH HOH A . E 3 HOH 5 172 13 HOH HOH A . E 3 HOH 6 173 14 HOH HOH A . E 3 HOH 7 174 15 HOH HOH A . E 3 HOH 8 175 16 HOH HOH A . E 3 HOH 9 176 17 HOH HOH A . E 3 HOH 10 177 177 HOH HOH A . E 3 HOH 11 178 178 HOH HOH A . E 3 HOH 12 179 18 HOH HOH A . E 3 HOH 13 180 19 HOH HOH A . E 3 HOH 14 181 181 HOH HOH A . E 3 HOH 15 182 182 HOH HOH A . E 3 HOH 16 183 183 HOH HOH A . E 3 HOH 17 184 184 HOH HOH A . E 3 HOH 18 185 185 HOH HOH A . E 3 HOH 19 186 186 HOH HOH A . E 3 HOH 20 187 187 HOH HOH A . E 3 HOH 21 188 188 HOH HOH A . E 3 HOH 22 189 189 HOH HOH A . E 3 HOH 23 190 20 HOH HOH A . E 3 HOH 24 191 191 HOH HOH A . E 3 HOH 25 192 192 HOH HOH A . E 3 HOH 26 193 193 HOH HOH A . E 3 HOH 27 194 194 HOH HOH A . E 3 HOH 28 195 195 HOH HOH A . E 3 HOH 29 196 196 HOH HOH A . E 3 HOH 30 197 197 HOH HOH A . E 3 HOH 31 198 21 HOH HOH A . E 3 HOH 32 199 199 HOH HOH A . E 3 HOH 33 200 200 HOH HOH A . E 3 HOH 34 202 22 HOH HOH A . E 3 HOH 35 203 23 HOH HOH A . E 3 HOH 36 204 204 HOH HOH A . E 3 HOH 37 205 26 HOH HOH A . E 3 HOH 38 206 27 HOH HOH A . E 3 HOH 39 207 207 HOH HOH A . E 3 HOH 40 208 208 HOH HOH A . E 3 HOH 41 209 28 HOH HOH A . E 3 HOH 42 210 210 HOH HOH A . E 3 HOH 43 211 211 HOH HOH A . E 3 HOH 44 212 30 HOH HOH A . E 3 HOH 45 213 31 HOH HOH A . E 3 HOH 46 214 214 HOH HOH A . E 3 HOH 47 215 215 HOH HOH A . E 3 HOH 48 216 216 HOH HOH A . E 3 HOH 49 217 217 HOH HOH A . E 3 HOH 50 218 32 HOH HOH A . E 3 HOH 51 219 219 HOH HOH A . E 3 HOH 52 220 220 HOH HOH A . E 3 HOH 53 221 221 HOH HOH A . E 3 HOH 54 222 39 HOH HOH A . E 3 HOH 55 223 40 HOH HOH A . E 3 HOH 56 224 42 HOH HOH A . E 3 HOH 57 225 44 HOH HOH A . E 3 HOH 58 226 226 HOH HOH A . E 3 HOH 59 227 227 HOH HOH A . E 3 HOH 60 228 46 HOH HOH A . E 3 HOH 61 229 56 HOH HOH A . E 3 HOH 62 230 57 HOH HOH A . E 3 HOH 63 231 231 HOH HOH A . E 3 HOH 64 232 232 HOH HOH A . E 3 HOH 65 233 233 HOH HOH A . E 3 HOH 66 234 234 HOH HOH A . E 3 HOH 67 235 58 HOH HOH A . E 3 HOH 68 236 236 HOH HOH A . E 3 HOH 69 237 237 HOH HOH A . E 3 HOH 70 238 59 HOH HOH A . E 3 HOH 71 239 60 HOH HOH A . E 3 HOH 72 240 61 HOH HOH A . E 3 HOH 73 241 62 HOH HOH A . E 3 HOH 74 242 63 HOH HOH A . E 3 HOH 75 243 243 HOH HOH A . E 3 HOH 76 244 64 HOH HOH A . E 3 HOH 77 245 65 HOH HOH A . E 3 HOH 78 246 246 HOH HOH A . E 3 HOH 79 247 72 HOH HOH A . E 3 HOH 80 248 74 HOH HOH A . E 3 HOH 81 249 75 HOH HOH A . E 3 HOH 82 250 76 HOH HOH A . E 3 HOH 83 251 251 HOH HOH A . E 3 HOH 84 252 252 HOH HOH A . E 3 HOH 85 253 253 HOH HOH A . E 3 HOH 86 254 254 HOH HOH A . E 3 HOH 87 255 79 HOH HOH A . E 3 HOH 88 256 256 HOH HOH A . E 3 HOH 89 257 80 HOH HOH A . E 3 HOH 90 258 81 HOH HOH A . E 3 HOH 91 259 259 HOH HOH A . E 3 HOH 92 260 82 HOH HOH A . E 3 HOH 93 261 84 HOH HOH A . E 3 HOH 94 262 262 HOH HOH A . E 3 HOH 95 263 85 HOH HOH A . E 3 HOH 96 264 264 HOH HOH A . E 3 HOH 97 265 86 HOH HOH A . E 3 HOH 98 266 266 HOH HOH A . E 3 HOH 99 267 267 HOH HOH A . E 3 HOH 100 268 268 HOH HOH A . E 3 HOH 101 269 87 HOH HOH A . E 3 HOH 102 270 270 HOH HOH A . E 3 HOH 103 271 271 HOH HOH A . E 3 HOH 104 272 88 HOH HOH A . E 3 HOH 105 273 273 HOH HOH A . E 3 HOH 106 274 274 HOH HOH A . E 3 HOH 107 275 275 HOH HOH A . E 3 HOH 108 276 276 HOH HOH A . E 3 HOH 109 277 89 HOH HOH A . E 3 HOH 110 278 96 HOH HOH A . E 3 HOH 111 279 279 HOH HOH A . E 3 HOH 112 280 280 HOH HOH A . E 3 HOH 113 281 102 HOH HOH A . E 3 HOH 114 282 282 HOH HOH A . E 3 HOH 115 283 113 HOH HOH A . E 3 HOH 116 284 284 HOH HOH A . E 3 HOH 117 285 285 HOH HOH A . E 3 HOH 118 286 115 HOH HOH A . E 3 HOH 119 287 118 HOH HOH A . E 3 HOH 120 288 120 HOH HOH A . E 3 HOH 121 289 121 HOH HOH A . E 3 HOH 122 290 122 HOH HOH A . E 3 HOH 123 291 125 HOH HOH A . E 3 HOH 124 292 130 HOH HOH A . E 3 HOH 125 293 131 HOH HOH A . E 3 HOH 126 294 132 HOH HOH A . E 3 HOH 127 295 139 HOH HOH A . E 3 HOH 128 296 140 HOH HOH A . E 3 HOH 129 297 143 HOH HOH A . E 3 HOH 130 298 152 HOH HOH A . E 3 HOH 131 299 153 HOH HOH A . E 3 HOH 132 300 154 HOH HOH A . E 3 HOH 133 301 155 HOH HOH A . E 3 HOH 134 302 157 HOH HOH A . E 3 HOH 135 303 158 HOH HOH A . E 3 HOH 136 304 159 HOH HOH A . E 3 HOH 137 305 160 HOH HOH A . E 3 HOH 138 306 162 HOH HOH A . E 3 HOH 139 307 163 HOH HOH A . E 3 HOH 140 308 164 HOH HOH A . E 3 HOH 141 309 166 HOH HOH A . F 3 HOH 1 168 168 HOH HOH B . F 3 HOH 2 169 169 HOH HOH B . F 3 HOH 3 170 170 HOH HOH B . F 3 HOH 4 171 171 HOH HOH B . F 3 HOH 5 172 172 HOH HOH B . F 3 HOH 6 173 173 HOH HOH B . F 3 HOH 7 174 174 HOH HOH B . F 3 HOH 8 175 175 HOH HOH B . F 3 HOH 9 176 176 HOH HOH B . F 3 HOH 10 177 1 HOH HOH B . F 3 HOH 11 178 3 HOH HOH B . F 3 HOH 12 179 179 HOH HOH B . F 3 HOH 13 180 180 HOH HOH B . F 3 HOH 14 181 5 HOH HOH B . F 3 HOH 15 182 7 HOH HOH B . F 3 HOH 16 183 8 HOH HOH B . F 3 HOH 17 184 9 HOH HOH B . F 3 HOH 18 185 10 HOH HOH B . F 3 HOH 19 186 11 HOH HOH B . F 3 HOH 20 187 24 HOH HOH B . F 3 HOH 21 188 25 HOH HOH B . F 3 HOH 22 189 29 HOH HOH B . F 3 HOH 23 190 190 HOH HOH B . F 3 HOH 24 191 33 HOH HOH B . F 3 HOH 25 192 34 HOH HOH B . F 3 HOH 26 193 35 HOH HOH B . F 3 HOH 27 194 36 HOH HOH B . F 3 HOH 28 195 37 HOH HOH B . F 3 HOH 29 196 38 HOH HOH B . F 3 HOH 30 197 41 HOH HOH B . F 3 HOH 31 198 198 HOH HOH B . F 3 HOH 32 199 43 HOH HOH B . F 3 HOH 33 200 45 HOH HOH B . F 3 HOH 34 202 202 HOH HOH B . F 3 HOH 35 203 203 HOH HOH B . F 3 HOH 36 204 47 HOH HOH B . F 3 HOH 37 205 205 HOH HOH B . F 3 HOH 38 206 206 HOH HOH B . F 3 HOH 39 207 48 HOH HOH B . F 3 HOH 40 208 49 HOH HOH B . F 3 HOH 41 209 209 HOH HOH B . F 3 HOH 42 210 50 HOH HOH B . F 3 HOH 43 211 51 HOH HOH B . F 3 HOH 44 212 212 HOH HOH B . F 3 HOH 45 213 213 HOH HOH B . F 3 HOH 46 214 52 HOH HOH B . F 3 HOH 47 215 53 HOH HOH B . F 3 HOH 48 216 54 HOH HOH B . F 3 HOH 49 217 55 HOH HOH B . F 3 HOH 50 218 218 HOH HOH B . F 3 HOH 51 219 66 HOH HOH B . F 3 HOH 52 220 67 HOH HOH B . F 3 HOH 53 221 68 HOH HOH B . F 3 HOH 54 222 222 HOH HOH B . F 3 HOH 55 223 223 HOH HOH B . F 3 HOH 56 224 224 HOH HOH B . F 3 HOH 57 225 225 HOH HOH B . F 3 HOH 58 226 69 HOH HOH B . F 3 HOH 59 227 70 HOH HOH B . F 3 HOH 60 228 228 HOH HOH B . F 3 HOH 61 229 229 HOH HOH B . F 3 HOH 62 230 230 HOH HOH B . F 3 HOH 63 231 71 HOH HOH B . F 3 HOH 64 232 73 HOH HOH B . F 3 HOH 65 233 77 HOH HOH B . F 3 HOH 66 234 78 HOH HOH B . F 3 HOH 67 235 235 HOH HOH B . F 3 HOH 68 236 83 HOH HOH B . F 3 HOH 69 237 90 HOH HOH B . F 3 HOH 70 238 238 HOH HOH B . F 3 HOH 71 239 239 HOH HOH B . F 3 HOH 72 240 240 HOH HOH B . F 3 HOH 73 241 241 HOH HOH B . F 3 HOH 74 242 242 HOH HOH B . F 3 HOH 75 243 91 HOH HOH B . F 3 HOH 76 244 244 HOH HOH B . F 3 HOH 77 245 245 HOH HOH B . F 3 HOH 78 246 92 HOH HOH B . F 3 HOH 79 247 247 HOH HOH B . F 3 HOH 80 248 248 HOH HOH B . F 3 HOH 81 249 249 HOH HOH B . F 3 HOH 82 250 250 HOH HOH B . F 3 HOH 83 251 93 HOH HOH B . F 3 HOH 84 252 94 HOH HOH B . F 3 HOH 85 253 95 HOH HOH B . F 3 HOH 86 254 97 HOH HOH B . F 3 HOH 87 255 255 HOH HOH B . F 3 HOH 88 256 98 HOH HOH B . F 3 HOH 89 257 257 HOH HOH B . F 3 HOH 90 258 258 HOH HOH B . F 3 HOH 91 259 99 HOH HOH B . F 3 HOH 92 260 260 HOH HOH B . F 3 HOH 93 261 261 HOH HOH B . F 3 HOH 94 262 100 HOH HOH B . F 3 HOH 95 263 263 HOH HOH B . F 3 HOH 96 264 101 HOH HOH B . F 3 HOH 97 265 265 HOH HOH B . F 3 HOH 98 266 103 HOH HOH B . F 3 HOH 99 267 104 HOH HOH B . F 3 HOH 100 268 105 HOH HOH B . F 3 HOH 101 269 269 HOH HOH B . F 3 HOH 102 270 106 HOH HOH B . F 3 HOH 103 271 107 HOH HOH B . F 3 HOH 104 272 272 HOH HOH B . F 3 HOH 105 273 108 HOH HOH B . F 3 HOH 106 274 109 HOH HOH B . F 3 HOH 107 275 110 HOH HOH B . F 3 HOH 108 276 111 HOH HOH B . F 3 HOH 109 277 277 HOH HOH B . F 3 HOH 110 278 278 HOH HOH B . F 3 HOH 111 279 112 HOH HOH B . F 3 HOH 112 280 114 HOH HOH B . F 3 HOH 113 281 281 HOH HOH B . F 3 HOH 114 282 116 HOH HOH B . F 3 HOH 115 283 283 HOH HOH B . F 3 HOH 116 284 117 HOH HOH B . F 3 HOH 117 285 119 HOH HOH B . F 3 HOH 118 286 286 HOH HOH B . F 3 HOH 119 287 123 HOH HOH B . F 3 HOH 120 288 124 HOH HOH B . F 3 HOH 121 289 126 HOH HOH B . F 3 HOH 122 290 127 HOH HOH B . F 3 HOH 123 291 128 HOH HOH B . F 3 HOH 124 292 129 HOH HOH B . F 3 HOH 125 293 133 HOH HOH B . F 3 HOH 126 294 134 HOH HOH B . F 3 HOH 127 295 135 HOH HOH B . F 3 HOH 128 296 136 HOH HOH B . F 3 HOH 129 297 137 HOH HOH B . F 3 HOH 130 298 138 HOH HOH B . F 3 HOH 131 299 141 HOH HOH B . F 3 HOH 132 300 142 HOH HOH B . F 3 HOH 133 301 144 HOH HOH B . F 3 HOH 134 302 145 HOH HOH B . F 3 HOH 135 303 146 HOH HOH B . F 3 HOH 136 304 147 HOH HOH B . F 3 HOH 137 305 148 HOH HOH B . F 3 HOH 138 306 149 HOH HOH B . F 3 HOH 139 307 150 HOH HOH B . F 3 HOH 140 308 151 HOH HOH B . F 3 HOH 141 309 156 HOH HOH B . F 3 HOH 142 310 161 HOH HOH B . F 3 HOH 143 311 165 HOH HOH B . F 3 HOH 144 312 167 HOH HOH B . F 3 HOH 145 313 201 HOH HOH B . #