HEADER VIRAL PROTEIN 30-AUG-10 3ONU TITLE CRYSTAL STRUCTURE OF P DOMAIN FROM NORWALK VIRUS STRAIN VIETNAM 026 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P DOMAIN (UNP RESIDUES 225-538); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NORWALK VIRUS; SOURCE 3 ORGANISM_TAXID: 11983; SOURCE 4 STRAIN: VIETNAM 026; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: MBP-HTSHP KEYWDS VIRAL CAPSID DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.S.HANSMAN,C.BIERTUMPFEL,L.CHEN,I.GEORGIEV,J.S.MCLELLAN,K.KATAYAMA, AUTHOR 2 P.D.KWONG REVDAT 3 21-FEB-24 3ONU 1 REMARK SEQADV REVDAT 2 22-JUN-11 3ONU 1 JRNL REVDAT 1 11-MAY-11 3ONU 0 JRNL AUTH G.S.HANSMAN,C.BIERTUMPFEL,I.GEORGIEV,J.S.MCLELLAN,L.CHEN, JRNL AUTH 2 T.ZHOU,K.KATAYAMA,P.D.KWONG JRNL TITL CRYSTAL STRUCTURES OF GII.10 AND GII.12 NOROVIRUS PROTRUDING JRNL TITL 2 DOMAINS IN COMPLEX WITH HISTO-BLOOD GROUP ANTIGENS REVEAL JRNL TITL 3 DETAILS FOR A POTENTIAL SITE OF VULNERABILITY. JRNL REF J.VIROL. V. 85 6687 2011 JRNL REFN ISSN 0022-538X JRNL PMID 21525337 JRNL DOI 10.1128/JVI.00246-11 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 3 NUMBER OF REFLECTIONS : 122330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 6166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.6977 - 4.3264 1.00 4471 216 0.1587 0.1684 REMARK 3 2 4.3264 - 3.4378 1.00 4381 253 0.1422 0.1559 REMARK 3 3 3.4378 - 3.0044 1.00 4380 212 0.1483 0.1650 REMARK 3 4 3.0044 - 2.7302 0.99 4378 221 0.1511 0.1610 REMARK 3 5 2.7302 - 2.5348 0.99 4341 217 0.1475 0.1757 REMARK 3 6 2.5348 - 2.3855 0.98 4274 220 0.1403 0.1383 REMARK 3 7 2.3855 - 2.2662 0.99 4272 266 0.1350 0.1407 REMARK 3 8 2.2662 - 2.1676 0.99 4292 229 0.1334 0.1494 REMARK 3 9 2.1676 - 2.0842 0.99 4322 223 0.1387 0.1666 REMARK 3 10 2.0842 - 2.0123 0.99 4329 207 0.1403 0.1550 REMARK 3 11 2.0123 - 1.9494 0.98 4263 231 0.1392 0.1659 REMARK 3 12 1.9494 - 1.8937 0.96 4189 228 0.1435 0.1640 REMARK 3 13 1.8937 - 1.8439 0.94 4098 222 0.1463 0.1535 REMARK 3 14 1.8439 - 1.7989 0.94 4051 220 0.1372 0.1426 REMARK 3 15 1.7989 - 1.7581 0.94 4083 216 0.1377 0.1879 REMARK 3 16 1.7581 - 1.7207 0.93 4074 205 0.1422 0.1683 REMARK 3 17 1.7207 - 1.6863 0.93 4049 195 0.1478 0.1637 REMARK 3 18 1.6863 - 1.6544 0.92 3970 244 0.1510 0.1786 REMARK 3 19 1.6544 - 1.6249 0.91 3955 214 0.1571 0.1927 REMARK 3 20 1.6249 - 1.5974 0.91 3923 209 0.1629 0.1978 REMARK 3 21 1.5974 - 1.5716 0.89 3873 207 0.1670 0.1942 REMARK 3 22 1.5716 - 1.5474 0.88 3787 210 0.1767 0.2112 REMARK 3 23 1.5474 - 1.5247 0.85 3726 172 0.1770 0.1842 REMARK 3 24 1.5247 - 1.5032 0.82 3598 207 0.1914 0.2152 REMARK 3 25 1.5032 - 1.4829 0.78 3389 194 0.1957 0.2342 REMARK 3 26 1.4829 - 1.4636 0.74 3220 173 0.2045 0.2152 REMARK 3 27 1.4636 - 1.4454 0.70 2995 173 0.2050 0.2294 REMARK 3 28 1.4454 - 1.4279 0.65 2844 125 0.2149 0.2404 REMARK 3 29 1.4279 - 1.4113 0.60 2589 155 0.2197 0.2501 REMARK 3 30 1.4113 - 1.3955 0.47 2048 102 0.2240 0.2351 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.65 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 46.48 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.37900 REMARK 3 B22 (A**2) : -2.02720 REMARK 3 B33 (A**2) : 3.40620 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.34470 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4978 REMARK 3 ANGLE : 1.331 6803 REMARK 3 CHIRALITY : 0.084 756 REMARK 3 PLANARITY : 0.008 899 REMARK 3 DIHEDRAL : 11.591 1785 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 8.1285 6.2442 8.6620 REMARK 3 T TENSOR REMARK 3 T11: 0.0709 T22: 0.0649 REMARK 3 T33: 0.0407 T12: -0.0113 REMARK 3 T13: 0.0023 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.6583 L22: 0.6807 REMARK 3 L33: 0.9128 L12: 0.0724 REMARK 3 L13: -0.0357 L23: -0.0635 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: 0.0798 S13: 0.0105 REMARK 3 S21: -0.0706 S22: 0.0388 S23: 0.0095 REMARK 3 S31: -0.0811 S32: 0.0350 S33: -0.0267 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 20.7727 -5.9103 25.0878 REMARK 3 T TENSOR REMARK 3 T11: 0.0746 T22: 0.0785 REMARK 3 T33: 0.1057 T12: 0.0063 REMARK 3 T13: -0.0214 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.8206 L22: 0.9013 REMARK 3 L33: 0.5165 L12: -0.0011 REMARK 3 L13: 0.1490 L23: 0.1082 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: -0.0279 S13: -0.1194 REMARK 3 S21: 0.0694 S22: 0.0435 S23: -0.1603 REMARK 3 S31: 0.0359 S32: 0.0789 S33: -0.0559 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ONU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000061350. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111. ROSENBAUM-ROCK DOUBLE REMARK 200 -CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 130975 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.44900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE PH 6.5, 8.25% PEG REMARK 280 8000, 1% MPD , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.55550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 221 REMARK 465 PRO A 222 REMARK 465 GLY A 223 REMARK 465 GLY B 221 REMARK 465 PRO B 222 REMARK 465 GLY B 223 REMARK 465 ASN B 344 REMARK 465 THR B 345 REMARK 465 VAL B 346 REMARK 465 PRO B 347 REMARK 465 GLY B 348 REMARK 465 GLU B 349 REMARK 465 GLY B 350 REMARK 465 ASN B 351 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB THR B 233 O HOH B 824 1.38 REMARK 500 O HOH A 756 O HOH A 792 1.83 REMARK 500 O HOH A 835 O HOH B 657 1.88 REMARK 500 O HOH A 800 O HOH A 891 1.89 REMARK 500 O HOH B 668 O HOH B 695 1.89 REMARK 500 O HOH A 772 O HOH B 771 1.90 REMARK 500 O HOH B 819 O HOH B 907 1.93 REMARK 500 O HOH A 765 O HOH A 789 1.94 REMARK 500 O HOH A 691 O HOH B 893 1.96 REMARK 500 O HOH A 878 O HOH A 885 1.96 REMARK 500 O HOH B 178 O HOH B 824 1.97 REMARK 500 O HOH A 829 O HOH A 831 1.97 REMARK 500 O HOH B 691 O HOH B 780 1.98 REMARK 500 O HOH A 780 O HOH B 610 2.00 REMARK 500 O THR B 519 O HOH B 824 2.00 REMARK 500 O HOH B 769 O HOH B 781 2.00 REMARK 500 O HOH A 215 O HOH B 752 2.01 REMARK 500 O HOH B 593 O HOH B 710 2.02 REMARK 500 O HOH B 594 O HOH B 638 2.02 REMARK 500 OD1 ASN B 502 O HOH B 843 2.03 REMARK 500 O HOH B 539 O HOH B 668 2.05 REMARK 500 O HOH A 661 O HOH A 823 2.07 REMARK 500 O HOH A 753 O HOH A 754 2.08 REMARK 500 O HOH B 720 O HOH B 726 2.09 REMARK 500 O HOH A 736 O HOH A 824 2.10 REMARK 500 O HOH B 760 O HOH B 821 2.12 REMARK 500 O HOH B 685 O HOH B 793 2.12 REMARK 500 OD1 ASN A 375 O HOH A 768 2.12 REMARK 500 O HOH B 122 O HOH B 824 2.12 REMARK 500 O HOH A 125 O HOH A 567 2.13 REMARK 500 O HOH A 650 O HOH B 645 2.15 REMARK 500 O HOH B 629 O HOH B 716 2.15 REMARK 500 O HOH A 835 O HOH B 778 2.16 REMARK 500 O HOH B 762 O HOH B 785 2.16 REMARK 500 O HOH B 772 O HOH B 852 2.16 REMARK 500 O HOH B 784 O HOH B 857 2.16 REMARK 500 O HOH A 557 O HOH B 175 2.17 REMARK 500 O HOH B 685 O HOH B 712 2.17 REMARK 500 O HOH A 753 O HOH A 847 2.17 REMARK 500 O HOH B 646 O HOH B 783 2.17 REMARK 500 O HOH A 735 O HOH A 882 2.19 REMARK 500 O GLY A 491 O HOH A 901 2.19 REMARK 500 O HOH A 794 O HOH A 862 2.19 REMARK 500 O HOH B 113 O HOH B 648 2.19 REMARK 500 O HOH A 827 O HOH A 881 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 341 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 252 74.55 -153.18 REMARK 500 GLN A 260 48.16 -148.00 REMARK 500 THR A 291 -68.31 -97.54 REMARK 500 GLN A 384 -21.54 -146.10 REMARK 500 VAL A 529 -147.08 -119.71 REMARK 500 ASN B 252 75.10 -157.59 REMARK 500 GLN B 260 48.00 -145.93 REMARK 500 HIS B 298 -67.83 -99.60 REMARK 500 ASP B 385 55.73 -90.56 REMARK 500 VAL B 529 -157.18 -133.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 8 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ONY RELATED DB: PDB DBREF 3ONU A 225 538 UNP Q5F4T5 Q5F4T5_9CALI 225 538 DBREF 3ONU B 225 538 UNP Q5F4T5 Q5F4T5_9CALI 225 538 SEQADV 3ONU GLY A 221 UNP Q5F4T5 EXPRESSION TAG SEQADV 3ONU PRO A 222 UNP Q5F4T5 EXPRESSION TAG SEQADV 3ONU GLY A 223 UNP Q5F4T5 EXPRESSION TAG SEQADV 3ONU SER A 224 UNP Q5F4T5 EXPRESSION TAG SEQADV 3ONU GLY B 221 UNP Q5F4T5 EXPRESSION TAG SEQADV 3ONU PRO B 222 UNP Q5F4T5 EXPRESSION TAG SEQADV 3ONU GLY B 223 UNP Q5F4T5 EXPRESSION TAG SEQADV 3ONU SER B 224 UNP Q5F4T5 EXPRESSION TAG SEQRES 1 A 318 GLY PRO GLY SER LYS PRO PHE THR LEU PRO ILE LEU THR SEQRES 2 A 318 LEU GLY GLU LEU THR ASN SER ARG PHE PRO LEU PRO ILE SEQRES 3 A 318 ASP VAL LEU TYR THR ASN PRO ASN GLU SER ALA ILE VAL SEQRES 4 A 318 GLN CYS GLN ASN GLY ARG CYS THR LEU ASP GLY GLU LEU SEQRES 5 A 318 GLN GLY THR THR GLN LEU LEU PRO THR GLY ILE CYS ALA SEQRES 6 A 318 PHE ARG GLY LYS VAL THR GLN GLN VAL GLN ASP GLU HIS SEQRES 7 A 318 ARG GLY THR HIS TRP ASN MET THR VAL THR ASN LEU ASN SEQRES 8 A 318 GLY THR PRO PHE ASP PRO THR GLU ASP VAL PRO ALA PRO SEQRES 9 A 318 LEU GLY THR PRO ASP PHE SER GLY GLN ILE TYR GLY VAL SEQRES 10 A 318 ILE SER GLN ARG ASN THR ASN THR VAL PRO GLY GLU GLY SEQRES 11 A 318 ASN LEU PRO ALA ASN ARG ALA HIS GLU ALA VAL ILE ALA SEQRES 12 A 318 THR TYR SER PRO LYS PHE THR PRO LYS LEU GLY ASN ILE SEQRES 13 A 318 GLN PHE SER THR TRP GLU THR GLN ASP VAL SER SER GLY SEQRES 14 A 318 GLN PRO THR LYS PHE THR PRO VAL GLY LEU ALA SER VAL SEQRES 15 A 318 ASP ALA ASN SER HIS PHE ASP GLN TRP THR LEU PRO SER SEQRES 16 A 318 TYR SER GLY ALA LEU THR LEU ASN MET ASN LEU ALA PRO SEQRES 17 A 318 SER VAL ALA PRO VAL PHE PRO GLY GLU CYS LEU LEU PHE SEQRES 18 A 318 PHE ARG SER PHE ILE PRO LEU LYS GLY GLY TYR GLY ASN SEQRES 19 A 318 PRO ALA ILE ASP CYS LEU MET PRO GLN GLU TRP VAL GLN SEQRES 20 A 318 HIS LEU TYR GLN GLU SER ALA PRO SER LEU SER ASP VAL SEQRES 21 A 318 ALA LEU VAL ARG TYR VAL ASN PRO GLU THR GLY ARG THR SEQRES 22 A 318 LEU PHE GLU ALA LYS LEU HIS ARG ASN GLY PHE LEU THR SEQRES 23 A 318 VAL ALA ARG ASN SER ALA GLY PRO VAL VAL ALA PRO THR SEQRES 24 A 318 ASN GLY TYR PHE ARG PHE ASP SER TRP VAL ASN GLN PHE SEQRES 25 A 318 TYR THR LEU ALA PRO MET SEQRES 1 B 318 GLY PRO GLY SER LYS PRO PHE THR LEU PRO ILE LEU THR SEQRES 2 B 318 LEU GLY GLU LEU THR ASN SER ARG PHE PRO LEU PRO ILE SEQRES 3 B 318 ASP VAL LEU TYR THR ASN PRO ASN GLU SER ALA ILE VAL SEQRES 4 B 318 GLN CYS GLN ASN GLY ARG CYS THR LEU ASP GLY GLU LEU SEQRES 5 B 318 GLN GLY THR THR GLN LEU LEU PRO THR GLY ILE CYS ALA SEQRES 6 B 318 PHE ARG GLY LYS VAL THR GLN GLN VAL GLN ASP GLU HIS SEQRES 7 B 318 ARG GLY THR HIS TRP ASN MET THR VAL THR ASN LEU ASN SEQRES 8 B 318 GLY THR PRO PHE ASP PRO THR GLU ASP VAL PRO ALA PRO SEQRES 9 B 318 LEU GLY THR PRO ASP PHE SER GLY GLN ILE TYR GLY VAL SEQRES 10 B 318 ILE SER GLN ARG ASN THR ASN THR VAL PRO GLY GLU GLY SEQRES 11 B 318 ASN LEU PRO ALA ASN ARG ALA HIS GLU ALA VAL ILE ALA SEQRES 12 B 318 THR TYR SER PRO LYS PHE THR PRO LYS LEU GLY ASN ILE SEQRES 13 B 318 GLN PHE SER THR TRP GLU THR GLN ASP VAL SER SER GLY SEQRES 14 B 318 GLN PRO THR LYS PHE THR PRO VAL GLY LEU ALA SER VAL SEQRES 15 B 318 ASP ALA ASN SER HIS PHE ASP GLN TRP THR LEU PRO SER SEQRES 16 B 318 TYR SER GLY ALA LEU THR LEU ASN MET ASN LEU ALA PRO SEQRES 17 B 318 SER VAL ALA PRO VAL PHE PRO GLY GLU CYS LEU LEU PHE SEQRES 18 B 318 PHE ARG SER PHE ILE PRO LEU LYS GLY GLY TYR GLY ASN SEQRES 19 B 318 PRO ALA ILE ASP CYS LEU MET PRO GLN GLU TRP VAL GLN SEQRES 20 B 318 HIS LEU TYR GLN GLU SER ALA PRO SER LEU SER ASP VAL SEQRES 21 B 318 ALA LEU VAL ARG TYR VAL ASN PRO GLU THR GLY ARG THR SEQRES 22 B 318 LEU PHE GLU ALA LYS LEU HIS ARG ASN GLY PHE LEU THR SEQRES 23 B 318 VAL ALA ARG ASN SER ALA GLY PRO VAL VAL ALA PRO THR SEQRES 24 B 318 ASN GLY TYR PHE ARG PHE ASP SER TRP VAL ASN GLN PHE SEQRES 25 B 318 TYR THR LEU ALA PRO MET HET EDO A 2 10 HET EDO A 3 10 HET EDO A 4 10 HET EDO A 7 10 HET EDO B 1 10 HET EDO B 5 10 HET EDO B 6 10 HET EDO B 8 10 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 8(C2 H6 O2) FORMUL 11 HOH *909(H2 O) HELIX 1 1 THR A 233 LEU A 237 5 5 HELIX 2 2 LEU A 279 ILE A 283 5 5 HELIX 3 3 VAL A 346 GLY A 350 5 5 HELIX 4 4 THR A 370 LEU A 373 5 4 HELIX 5 5 ASP A 403 HIS A 407 5 5 HELIX 6 6 PRO A 462 SER A 473 1 12 HELIX 7 7 THR B 233 LEU B 237 5 5 HELIX 8 8 LEU B 279 ILE B 283 5 5 HELIX 9 9 THR B 370 LEU B 373 5 4 HELIX 10 10 ASP B 403 HIS B 407 5 5 HELIX 11 11 PRO B 462 SER B 473 1 12 SHEET 1 A 4 ALA A 456 CYS A 459 0 SHEET 2 A 4 GLU A 437 PHE A 445 -1 N SER A 444 O ILE A 457 SHEET 3 A 4 VAL A 248 THR A 251 -1 N VAL A 248 O ARG A 443 SHEET 4 A 4 GLY A 513 VAL A 515 -1 O GLY A 513 N THR A 251 SHEET 1 B 6 ALA A 456 CYS A 459 0 SHEET 2 B 6 GLU A 437 PHE A 445 -1 N SER A 444 O ILE A 457 SHEET 3 B 6 PHE A 504 ALA A 508 -1 O VAL A 507 N CYS A 438 SHEET 4 B 6 ARG A 492 HIS A 500 -1 N HIS A 500 O PHE A 504 SHEET 5 B 6 VAL A 480 ASN A 487 -1 N ALA A 481 O LEU A 499 SHEET 6 B 6 TYR A 522 VAL A 529 -1 O SER A 527 N LEU A 482 SHEET 1 C 8 GLY B 450 TYR B 452 0 SHEET 2 C 8 ALA A 354 ALA A 363 -1 N ASN A 355 O GLY B 451 SHEET 3 C 8 ASN A 375 THR A 380 -1 O SER A 379 N VAL A 361 SHEET 4 C 8 THR A 301 VAL A 307 -1 N MET A 305 O ILE A 376 SHEET 5 C 8 PHE A 286 VAL A 294 -1 N THR A 291 O ASN A 304 SHEET 6 C 8 PRO A 391 LEU A 399 -1 O THR A 392 N GLY A 288 SHEET 7 C 8 GLN A 333 ARG A 341 -1 N TYR A 335 O VAL A 397 SHEET 8 C 8 ALA A 354 ALA A 363 -1 O ILE A 362 N ILE A 334 SHEET 1 D 8 GLY A 450 TYR A 452 0 SHEET 2 D 8 ALA B 354 ALA B 363 -1 O ASN B 355 N GLY A 451 SHEET 3 D 8 ASN B 375 THR B 380 -1 O SER B 379 N VAL B 361 SHEET 4 D 8 THR B 301 VAL B 307 -1 N MET B 305 O ILE B 376 SHEET 5 D 8 PHE B 286 GLN B 295 -1 N LYS B 289 O THR B 306 SHEET 6 D 8 PRO B 391 LEU B 399 -1 O THR B 392 N GLY B 288 SHEET 7 D 8 GLN B 333 ARG B 341 -1 N VAL B 337 O THR B 395 SHEET 8 D 8 ALA B 354 ALA B 363 -1 O ILE B 362 N ILE B 334 SHEET 1 E 4 ALA B 456 CYS B 459 0 SHEET 2 E 4 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 E 4 VAL B 248 THR B 251 -1 N TYR B 250 O PHE B 441 SHEET 4 E 4 GLY B 513 PRO B 514 -1 O GLY B 513 N THR B 251 SHEET 1 F 6 ALA B 456 CYS B 459 0 SHEET 2 F 6 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 F 6 PHE B 504 ALA B 508 -1 O VAL B 507 N CYS B 438 SHEET 4 F 6 THR B 493 HIS B 500 -1 N HIS B 500 O PHE B 504 SHEET 5 F 6 VAL B 480 VAL B 486 -1 N ALA B 481 O LEU B 499 SHEET 6 F 6 TYR B 522 VAL B 529 -1 O SER B 527 N LEU B 482 SITE 1 AC1 5 HOH A 90 HOH A 140 THR A 281 GLY A 282 SITE 2 AC1 5 LEU A 310 SITE 1 AC2 7 HOH A 29 HOH A 37 HOH A 181 ASN A 309 SITE 2 AC2 7 LEU A 310 ASN A 311 LEU A 325 SITE 1 AC3 5 HOH A 165 GLU A 464 HIS A 468 HOH A 606 SITE 2 AC3 5 HOH B 118 SITE 1 AC4 8 ARG A 299 GLY A 300 SER A 379 THR A 380 SITE 2 AC4 8 TRP A 381 HOH A 703 HOH A 819 HOH A 851 SITE 1 AC5 6 HOH B 75 HOH B 169 LEU B 279 THR B 281 SITE 2 AC5 6 GLY B 282 ARG B 287 SITE 1 AC6 7 HOH B 20 HOH B 42 ASN B 309 LEU B 310 SITE 2 AC6 7 ASN B 311 LEU B 325 HOH B 544 SITE 1 AC7 6 GLN A 471 HOH B 114 HOH B 118 GLU B 464 SITE 2 AC7 6 HIS B 468 HOH B 788 SITE 1 AC8 4 HOH A 115 PRO A 447 ARG B 341 HOH B 568 CRYST1 65.217 79.111 69.292 90.00 99.65 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015333 0.000000 0.002607 0.00000 SCALE2 0.000000 0.012640 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014639 0.00000