HEADER ISOMERASE 16-SEP-10 3OVP TITLE CRYSTAL STRUCTURE OF HRPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBULOSE-PHOSPHATE 3-EPIMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: D-RIBULOSE-5-PHOSPHATE 3-EPIMERASE; COMPND 5 EC: 5.1.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RPE, HUSSY-17; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS IRON BINDING, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.G.LIANG,S.Y.OUYANG,N.SHAW,A.JOACHIMIAK,R.G.ZHANG,Z.J.LIU REVDAT 2 01-NOV-23 3OVP 1 REMARK LINK REVDAT 1 09-MAR-11 3OVP 0 JRNL AUTH W.G.LIANG,S.Y.OUYANG,N.SHAW,A.JOACHIMIAK,R.G.ZHANG,Z.J.LIU JRNL TITL CONVERSION OF D-RIBULOSE 5-PHOSPHATE TO D-XYLULOSE JRNL TITL 2 5-PHOSPHATE: NEW INSIGHTS FROM STRUCTURAL AND BIOCHEMICAL JRNL TITL 3 STUDIES ON HUMAN RPE JRNL REF FASEB J. V. 25 497 2011 JRNL REFN ISSN 0892-6638 JRNL PMID 20923965 JRNL DOI 10.1096/FJ.10-171207 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 46167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6656 - 3.6498 0.99 4697 248 0.1646 0.1730 REMARK 3 2 3.6498 - 2.8973 0.99 4567 227 0.1568 0.1638 REMARK 3 3 2.8973 - 2.5312 0.98 4535 230 0.1534 0.1878 REMARK 3 4 2.5312 - 2.2998 0.97 4487 210 0.1373 0.1808 REMARK 3 5 2.2998 - 2.1350 0.97 4422 243 0.1285 0.1643 REMARK 3 6 2.1350 - 2.0091 0.96 4426 222 0.1188 0.1543 REMARK 3 7 2.0091 - 1.9085 0.95 4329 249 0.1244 0.1766 REMARK 3 8 1.9085 - 1.8254 0.94 4264 234 0.1288 0.1698 REMARK 3 9 1.8254 - 1.7551 0.93 4195 253 0.1272 0.1669 REMARK 3 10 1.7551 - 1.6946 0.86 3905 224 0.1402 0.1673 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 54.35 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22900 REMARK 3 B22 (A**2) : 2.23990 REMARK 3 B33 (A**2) : -2.01090 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.33550 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3820 REMARK 3 ANGLE : 1.087 5195 REMARK 3 CHIRALITY : 0.073 555 REMARK 3 PLANARITY : 0.006 688 REMARK 3 DIHEDRAL : 16.476 1530 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 4:55) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3964 4.4268 19.1402 REMARK 3 T TENSOR REMARK 3 T11: 0.0643 T22: 0.0835 REMARK 3 T33: 0.0615 T12: -0.0217 REMARK 3 T13: 0.0023 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.5228 L22: 0.0862 REMARK 3 L33: 0.3050 L12: 0.1892 REMARK 3 L13: -0.3224 L23: -0.0725 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: -0.0736 S13: -0.0192 REMARK 3 S21: -0.0130 S22: -0.0206 S23: -0.0310 REMARK 3 S31: -0.0763 S32: 0.0724 S33: 0.0093 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 56:117) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1787 -7.7916 23.3901 REMARK 3 T TENSOR REMARK 3 T11: 0.0750 T22: 0.0432 REMARK 3 T33: 0.0835 T12: 0.0110 REMARK 3 T13: 0.0089 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.5322 L22: 0.2556 REMARK 3 L33: 0.9560 L12: 0.2443 REMARK 3 L13: -0.1408 L23: 0.1214 REMARK 3 S TENSOR REMARK 3 S11: -0.0635 S12: 0.0028 S13: -0.1474 REMARK 3 S21: 0.0437 S22: -0.0039 S23: -0.0701 REMARK 3 S31: 0.2287 S32: 0.0604 S33: 0.0560 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 118:172) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4081 3.6577 32.8342 REMARK 3 T TENSOR REMARK 3 T11: 0.0708 T22: 0.0727 REMARK 3 T33: 0.0582 T12: 0.0080 REMARK 3 T13: 0.0155 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.3379 L22: 0.9293 REMARK 3 L33: 0.6099 L12: -0.0828 REMARK 3 L13: 0.1667 L23: 0.6518 REMARK 3 S TENSOR REMARK 3 S11: -0.0401 S12: -0.0838 S13: 0.0305 REMARK 3 S21: 0.0633 S22: -0.0025 S23: 0.0519 REMARK 3 S31: -0.0457 S32: -0.0766 S33: 0.0386 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 173:224) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5910 14.5460 32.0966 REMARK 3 T TENSOR REMARK 3 T11: 0.0484 T22: 0.0711 REMARK 3 T33: 0.0366 T12: -0.0262 REMARK 3 T13: 0.0034 T23: -0.0391 REMARK 3 L TENSOR REMARK 3 L11: 2.0191 L22: 0.3021 REMARK 3 L33: 1.6632 L12: -0.2001 REMARK 3 L13: -1.7771 L23: 0.2807 REMARK 3 S TENSOR REMARK 3 S11: 0.1128 S12: -0.3523 S13: 0.2515 REMARK 3 S21: 0.0531 S22: 0.0585 S23: -0.0512 REMARK 3 S31: -0.1073 S32: 0.3481 S33: -0.1632 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 4:73) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9683 1.2835 0.2712 REMARK 3 T TENSOR REMARK 3 T11: 0.0718 T22: 0.0560 REMARK 3 T33: 0.0734 T12: -0.0038 REMARK 3 T13: -0.0010 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.4848 L22: 0.3111 REMARK 3 L33: 0.5366 L12: 0.0382 REMARK 3 L13: 0.1035 L23: 0.3302 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: -0.0004 S13: 0.0852 REMARK 3 S21: -0.0154 S22: -0.0105 S23: -0.0201 REMARK 3 S31: -0.0724 S32: 0.0253 S33: 0.0088 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 74:149) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6780 -2.1746 -6.4217 REMARK 3 T TENSOR REMARK 3 T11: 0.0221 T22: 0.0589 REMARK 3 T33: 0.0552 T12: 0.0135 REMARK 3 T13: -0.0324 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.2766 L22: 0.4251 REMARK 3 L33: 1.0730 L12: 0.1141 REMARK 3 L13: -0.2906 L23: 0.1506 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: 0.0700 S13: -0.0016 REMARK 3 S21: -0.0680 S22: -0.0113 S23: 0.0926 REMARK 3 S31: 0.0196 S32: -0.2080 S33: 0.0003 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 150:220) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6504 -10.7001 -12.7072 REMARK 3 T TENSOR REMARK 3 T11: 0.0850 T22: 0.0754 REMARK 3 T33: 0.0739 T12: 0.0098 REMARK 3 T13: -0.0054 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.5494 L22: 0.5847 REMARK 3 L33: 0.1940 L12: -0.0525 REMARK 3 L13: 0.0254 L23: 0.0236 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: 0.0286 S13: -0.0503 REMARK 3 S21: -0.0785 S22: 0.0211 S23: -0.0766 REMARK 3 S31: 0.0191 S32: 0.0150 S33: 0.0005 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 221:225) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9631 -9.6155 -27.1443 REMARK 3 T TENSOR REMARK 3 T11: 0.3004 T22: 0.4069 REMARK 3 T33: 0.2728 T12: 0.1085 REMARK 3 T13: -0.0940 T23: -0.1608 REMARK 3 L TENSOR REMARK 3 L11: 0.3103 L22: 0.1671 REMARK 3 L33: 0.7135 L12: 0.0710 REMARK 3 L13: 0.4310 L23: -0.0089 REMARK 3 S TENSOR REMARK 3 S11: 0.0222 S12: 0.0318 S13: -0.0086 REMARK 3 S21: 0.0157 S22: 0.0224 S23: -0.0240 REMARK 3 S31: 0.0481 S32: 0.0213 S33: -0.0376 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3OVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63711 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 1H1Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CHLORIDE, 0.1M BIS-TRIS, REMARK 280 25%(W/V) POLYETHYLENE GLYCOL 3350, PH 5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.37900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 SER A 225 REMARK 465 LEU A 226 REMARK 465 ASP A 227 REMARK 465 ARG A 228 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 LEU B 226 REMARK 465 ASP B 227 REMARK 465 ARG B 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 45 48.78 -82.61 REMARK 500 THR A 48 -82.21 -107.05 REMARK 500 ASN B 18 47.39 -140.80 REMARK 500 PRO B 45 46.99 -83.62 REMARK 500 THR B 48 -84.99 -109.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 XPE A 230 REMARK 610 XPE A 231 REMARK 610 XPE A 232 REMARK 610 XPE B 230 REMARK 610 XPE B 231 REMARK 610 XPE B 232 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 229 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 35 NE2 REMARK 620 2 ASP A 37 OD1 92.7 REMARK 620 3 HIS A 70 ND1 96.9 92.3 REMARK 620 4 ASP A 175 OD2 91.2 172.5 93.6 REMARK 620 5 HOH A 258 O 176.7 87.5 86.4 88.3 REMARK 620 6 HOH A 266 O 91.9 86.1 171.2 87.4 84.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 229 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 35 NE2 REMARK 620 2 ASP B 37 OD1 94.7 REMARK 620 3 HIS B 70 ND1 96.5 93.6 REMARK 620 4 ASP B 175 OD2 88.4 173.8 91.3 REMARK 620 5 HOH B 256 O 174.6 88.1 87.9 88.3 REMARK 620 6 HOH B 261 O 92.1 87.9 171.1 86.6 83.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XPE A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XPE A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XPE A 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XPE B 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XPE B 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XPE B 232 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OVQ RELATED DB: PDB REMARK 900 RELATED ID: 3OVR RELATED DB: PDB DBREF 3OVP A 1 228 UNP Q96AT9 RPE_HUMAN 1 228 DBREF 3OVP B 1 228 UNP Q96AT9 RPE_HUMAN 1 228 SEQRES 1 A 228 MET ALA SER GLY CYS LYS ILE GLY PRO SER ILE LEU ASN SEQRES 2 A 228 SER ASP LEU ALA ASN LEU GLY ALA GLU CYS LEU ARG MET SEQRES 3 A 228 LEU ASP SER GLY ALA ASP TYR LEU HIS LEU ASP VAL MET SEQRES 4 A 228 ASP GLY HIS PHE VAL PRO ASN ILE THR PHE GLY HIS PRO SEQRES 5 A 228 VAL VAL GLU SER LEU ARG LYS GLN LEU GLY GLN ASP PRO SEQRES 6 A 228 PHE PHE ASP MET HIS MET MET VAL SER LYS PRO GLU GLN SEQRES 7 A 228 TRP VAL LYS PRO MET ALA VAL ALA GLY ALA ASN GLN TYR SEQRES 8 A 228 THR PHE HIS LEU GLU ALA THR GLU ASN PRO GLY ALA LEU SEQRES 9 A 228 ILE LYS ASP ILE ARG GLU ASN GLY MET LYS VAL GLY LEU SEQRES 10 A 228 ALA ILE LYS PRO GLY THR SER VAL GLU TYR LEU ALA PRO SEQRES 11 A 228 TRP ALA ASN GLN ILE ASP MET ALA LEU VAL MET THR VAL SEQRES 12 A 228 GLU PRO GLY PHE GLY GLY GLN LYS PHE MET GLU ASP MET SEQRES 13 A 228 MET PRO LYS VAL HIS TRP LEU ARG THR GLN PHE PRO SER SEQRES 14 A 228 LEU ASP ILE GLU VAL ASP GLY GLY VAL GLY PRO ASP THR SEQRES 15 A 228 VAL HIS LYS CYS ALA GLU ALA GLY ALA ASN MET ILE VAL SEQRES 16 A 228 SER GLY SER ALA ILE MET ARG SER GLU ASP PRO ARG SER SEQRES 17 A 228 VAL ILE ASN LEU LEU ARG ASN VAL CYS SER GLU ALA ALA SEQRES 18 A 228 GLN LYS ARG SER LEU ASP ARG SEQRES 1 B 228 MET ALA SER GLY CYS LYS ILE GLY PRO SER ILE LEU ASN SEQRES 2 B 228 SER ASP LEU ALA ASN LEU GLY ALA GLU CYS LEU ARG MET SEQRES 3 B 228 LEU ASP SER GLY ALA ASP TYR LEU HIS LEU ASP VAL MET SEQRES 4 B 228 ASP GLY HIS PHE VAL PRO ASN ILE THR PHE GLY HIS PRO SEQRES 5 B 228 VAL VAL GLU SER LEU ARG LYS GLN LEU GLY GLN ASP PRO SEQRES 6 B 228 PHE PHE ASP MET HIS MET MET VAL SER LYS PRO GLU GLN SEQRES 7 B 228 TRP VAL LYS PRO MET ALA VAL ALA GLY ALA ASN GLN TYR SEQRES 8 B 228 THR PHE HIS LEU GLU ALA THR GLU ASN PRO GLY ALA LEU SEQRES 9 B 228 ILE LYS ASP ILE ARG GLU ASN GLY MET LYS VAL GLY LEU SEQRES 10 B 228 ALA ILE LYS PRO GLY THR SER VAL GLU TYR LEU ALA PRO SEQRES 11 B 228 TRP ALA ASN GLN ILE ASP MET ALA LEU VAL MET THR VAL SEQRES 12 B 228 GLU PRO GLY PHE GLY GLY GLN LYS PHE MET GLU ASP MET SEQRES 13 B 228 MET PRO LYS VAL HIS TRP LEU ARG THR GLN PHE PRO SER SEQRES 14 B 228 LEU ASP ILE GLU VAL ASP GLY GLY VAL GLY PRO ASP THR SEQRES 15 B 228 VAL HIS LYS CYS ALA GLU ALA GLY ALA ASN MET ILE VAL SEQRES 16 B 228 SER GLY SER ALA ILE MET ARG SER GLU ASP PRO ARG SER SEQRES 17 B 228 VAL ILE ASN LEU LEU ARG ASN VAL CYS SER GLU ALA ALA SEQRES 18 B 228 GLN LYS ARG SER LEU ASP ARG HET FE2 A 229 1 HET XPE A 230 11 HET XPE A 231 28 HET XPE A 232 14 HET FE2 B 229 1 HET XPE B 230 11 HET XPE B 231 5 HET XPE B 232 8 HETNAM FE2 FE (II) ION HETNAM XPE 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL HETSYN XPE DECAETHYLENE GLYCOL FORMUL 3 FE2 2(FE 2+) FORMUL 4 XPE 6(C20 H42 O11) FORMUL 11 HOH *282(H2 O) HELIX 1 1 ASP A 15 ALA A 17 5 3 HELIX 2 2 ASN A 18 SER A 29 1 12 HELIX 3 3 GLY A 50 GLY A 62 1 13 HELIX 4 4 LYS A 75 GLN A 78 5 4 HELIX 5 5 TRP A 79 GLY A 87 1 9 HELIX 6 6 GLU A 96 THR A 98 5 3 HELIX 7 7 ASN A 100 ASN A 111 1 12 HELIX 8 8 SER A 124 ILE A 135 5 12 HELIX 9 9 MET A 153 ASP A 155 5 3 HELIX 10 10 MET A 156 PHE A 167 1 12 HELIX 11 11 THR A 182 GLY A 190 1 9 HELIX 12 12 GLY A 197 ARG A 202 1 6 HELIX 13 13 ASP A 205 ARG A 224 1 20 HELIX 14 14 ASP B 15 ALA B 17 5 3 HELIX 15 15 ASN B 18 SER B 29 1 12 HELIX 16 16 GLY B 50 GLY B 62 1 13 HELIX 17 17 LYS B 75 GLN B 78 5 4 HELIX 18 18 TRP B 79 GLY B 87 1 9 HELIX 19 19 GLU B 96 THR B 98 5 3 HELIX 20 20 ASN B 100 ASN B 111 1 12 HELIX 21 21 SER B 124 ILE B 135 5 12 HELIX 22 22 MET B 153 ASP B 155 5 3 HELIX 23 23 MET B 156 PHE B 167 1 12 HELIX 24 24 THR B 182 GLY B 190 1 9 HELIX 25 25 GLY B 197 ARG B 202 1 6 HELIX 26 26 ASP B 205 SER B 225 1 21 SHEET 1 A 8 LYS A 6 PRO A 9 0 SHEET 2 A 8 MET A 193 SER A 196 1 O ILE A 194 N GLY A 8 SHEET 3 A 8 ASP A 171 ASP A 175 1 N VAL A 174 O VAL A 195 SHEET 4 A 8 MET A 137 MET A 141 1 N ALA A 138 O GLU A 173 SHEET 5 A 8 LYS A 114 ILE A 119 1 N LEU A 117 O LEU A 139 SHEET 6 A 8 GLN A 90 HIS A 94 1 N PHE A 93 O ALA A 118 SHEET 7 A 8 PHE A 67 MET A 72 1 N MET A 71 O THR A 92 SHEET 8 A 8 LEU A 34 MET A 39 1 N LEU A 34 O ASP A 68 SHEET 1 B 8 LYS B 6 PRO B 9 0 SHEET 2 B 8 MET B 193 SER B 196 1 O ILE B 194 N GLY B 8 SHEET 3 B 8 ASP B 171 ASP B 175 1 N ILE B 172 O MET B 193 SHEET 4 B 8 MET B 137 MET B 141 1 N ALA B 138 O GLU B 173 SHEET 5 B 8 LYS B 114 ILE B 119 1 N LEU B 117 O LEU B 139 SHEET 6 B 8 GLN B 90 HIS B 94 1 N PHE B 93 O ALA B 118 SHEET 7 B 8 PHE B 67 MET B 72 1 N MET B 71 O THR B 92 SHEET 8 B 8 LEU B 34 MET B 39 1 N LEU B 34 O ASP B 68 LINK NE2 HIS A 35 FE FE2 A 229 1555 1555 2.18 LINK OD1 ASP A 37 FE FE2 A 229 1555 1555 2.12 LINK ND1 HIS A 70 FE FE2 A 229 1555 1555 2.25 LINK OD2 ASP A 175 FE FE2 A 229 1555 1555 2.10 LINK FE FE2 A 229 O HOH A 258 1555 1555 2.35 LINK FE FE2 A 229 O HOH A 266 1555 1555 2.25 LINK NE2 HIS B 35 FE FE2 B 229 1555 1555 2.21 LINK OD1 ASP B 37 FE FE2 B 229 1555 1555 2.07 LINK ND1 HIS B 70 FE FE2 B 229 1555 1555 2.24 LINK OD2 ASP B 175 FE FE2 B 229 1555 1555 2.12 LINK FE FE2 B 229 O HOH B 256 1555 1555 2.26 LINK FE FE2 B 229 O HOH B 261 1555 1555 2.30 CISPEP 1 GLY A 148 GLY A 149 0 0.27 SITE 1 AC1 6 HIS A 35 ASP A 37 HIS A 70 ASP A 175 SITE 2 AC1 6 HOH A 258 HOH A 266 SITE 1 AC2 5 GLY A 4 LYS A 6 ASP A 32 ASP A 171 SITE 2 AC2 5 MET A 193 SITE 1 AC3 3 PRO A 121 MET A 153 HOH A 325 SITE 1 AC4 3 HIS A 184 LYS A 185 HOH A 238 SITE 1 AC5 6 HIS B 35 ASP B 37 HIS B 70 ASP B 175 SITE 2 AC5 6 HOH B 256 HOH B 261 SITE 1 AC6 5 GLY B 4 LYS B 6 ASP B 32 PHE B 66 SITE 2 AC6 5 ASP B 171 SITE 1 AC7 4 GLN B 63 GLY B 87 ALA B 88 GLY B 112 SITE 1 AC8 2 GLU B 126 TRP B 162 CRYST1 63.773 46.758 73.314 90.00 89.97 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015681 0.000000 -0.000008 0.00000 SCALE2 0.000000 0.021387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013640 0.00000