data_3OVZ # _entry.id 3OVZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3OVZ pdb_00003ovz 10.2210/pdb3ovz/pdb RCSB RCSB061640 ? ? WWPDB D_1000061640 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-10-12 4 'Structure model' 1 3 2012-05-09 5 'Structure model' 1 4 2018-01-31 6 'Structure model' 1 5 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Experimental preparation' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Derived calculations' 8 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' exptl_crystal_grow 2 6 'Structure model' chem_comp_atom 3 6 'Structure model' chem_comp_bond 4 6 'Structure model' database_2 5 6 'Structure model' pdbx_initial_refinement_model 6 6 'Structure model' struct_ref_seq_dif 7 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_exptl_crystal_grow.pdbx_details' 2 5 'Structure model' '_exptl_crystal_grow.temp' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' 5 6 'Structure model' '_struct_ref_seq_dif.details' 6 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3OVZ _pdbx_database_status.recvd_initial_deposition_date 2010-09-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3OVX _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fradera, X.' 1 'van Zeeland, M.' 2 'Uitdehaag, J.C.M.' 3 # _citation.id primary _citation.title 'Trifluoromethylphenyl as P2 for ketoamide-based cathepsin S inhibitors.' _citation.journal_abbrev Bioorg.Med.Chem.Lett. _citation.journal_volume 20 _citation.page_first 6890 _citation.page_last 6894 _citation.year 2010 _citation.journal_id_ASTM BMCLE8 _citation.country UK _citation.journal_id_ISSN 0960-894X _citation.journal_id_CSD 1127 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21030256 _citation.pdbx_database_id_DOI 10.1016/j.bmcl.2010.10.012 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cai, J.' 1 ? primary 'Robinson, J.' 2 ? primary 'Belshaw, S.' 3 ? primary 'Everett, K.' 4 ? primary 'Fradera, X.' 5 ? primary 'van Zeeland, M.' 6 ? primary 'van Berkom, L.' 7 ? primary 'van Rijnsbergen, P.' 8 ? primary 'Popplestone, L.' 9 ? primary 'Baugh, M.' 10 ? primary 'Dempster, M.' 11 ? primary 'Bruin, J.' 12 ? primary 'Hamilton, W.' 13 ? primary 'Kinghorn, E.' 14 ? primary 'Westwood, P.' 15 ? primary 'Kerr, J.' 16 ? primary 'Rankovic, Z.' 17 ? primary 'Arbuckle, W.' 18 ? primary 'Bennett, D.J.' 19 ? primary 'Jones, P.S.' 20 ? primary 'Long, C.' 21 ? primary 'Martin, I.' 22 ? primary 'Uitdehaag, J.C.' 23 ? primary 'Meulemans, T.' 24 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cathepsin K' 23355.287 1 3.4.22.38 ? 'UNP residues 121-329' ? 2 non-polymer syn 'N-[(1S)-3-amino-1-ethyl-2,3-dioxopropyl]-2-chloro-4-(pyridin-2-ylmethoxy)-3-(trifluoromethyl)benzamide' 443.804 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 4 water nat water 18.015 79 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cathepsin O, Cathepsin O2, Cathepsin X' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGID SEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNH AVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM ; _entity_poly.pdbx_seq_one_letter_code_can ;DSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGID SEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNH AVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'N-[(1S)-3-amino-1-ethyl-2,3-dioxopropyl]-2-chloro-4-(pyridin-2-ylmethoxy)-3-(trifluoromethyl)benzamide' O96 3 'SULFATE ION' SO4 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 SER n 1 3 VAL n 1 4 ASP n 1 5 TYR n 1 6 ARG n 1 7 LYS n 1 8 LYS n 1 9 GLY n 1 10 TYR n 1 11 VAL n 1 12 THR n 1 13 PRO n 1 14 VAL n 1 15 LYS n 1 16 ASN n 1 17 GLN n 1 18 GLY n 1 19 GLN n 1 20 CYS n 1 21 GLY n 1 22 SER n 1 23 CYS n 1 24 TRP n 1 25 ALA n 1 26 PHE n 1 27 SER n 1 28 SER n 1 29 VAL n 1 30 GLY n 1 31 ALA n 1 32 LEU n 1 33 GLU n 1 34 GLY n 1 35 GLN n 1 36 LEU n 1 37 LYS n 1 38 LYS n 1 39 LYS n 1 40 THR n 1 41 GLY n 1 42 LYS n 1 43 LEU n 1 44 LEU n 1 45 ASN n 1 46 LEU n 1 47 SER n 1 48 PRO n 1 49 GLN n 1 50 ASN n 1 51 LEU n 1 52 VAL n 1 53 ASP n 1 54 CYS n 1 55 VAL n 1 56 SER n 1 57 GLU n 1 58 ASN n 1 59 ASP n 1 60 GLY n 1 61 CYS n 1 62 GLY n 1 63 GLY n 1 64 GLY n 1 65 TYR n 1 66 MET n 1 67 THR n 1 68 ASN n 1 69 ALA n 1 70 PHE n 1 71 GLN n 1 72 TYR n 1 73 VAL n 1 74 GLN n 1 75 LYS n 1 76 ASN n 1 77 ARG n 1 78 GLY n 1 79 ILE n 1 80 ASP n 1 81 SER n 1 82 GLU n 1 83 ASP n 1 84 ALA n 1 85 TYR n 1 86 PRO n 1 87 TYR n 1 88 VAL n 1 89 GLY n 1 90 GLN n 1 91 GLU n 1 92 GLU n 1 93 SER n 1 94 CYS n 1 95 MET n 1 96 TYR n 1 97 ASN n 1 98 PRO n 1 99 THR n 1 100 GLY n 1 101 LYS n 1 102 ALA n 1 103 ALA n 1 104 LYS n 1 105 CYS n 1 106 ARG n 1 107 GLY n 1 108 TYR n 1 109 ARG n 1 110 GLU n 1 111 ILE n 1 112 PRO n 1 113 GLU n 1 114 GLY n 1 115 ASN n 1 116 GLU n 1 117 LYS n 1 118 ALA n 1 119 LEU n 1 120 LYS n 1 121 ARG n 1 122 ALA n 1 123 VAL n 1 124 ALA n 1 125 ARG n 1 126 VAL n 1 127 GLY n 1 128 PRO n 1 129 VAL n 1 130 SER n 1 131 VAL n 1 132 ALA n 1 133 ILE n 1 134 ASP n 1 135 ALA n 1 136 SER n 1 137 LEU n 1 138 THR n 1 139 SER n 1 140 PHE n 1 141 GLN n 1 142 PHE n 1 143 TYR n 1 144 SER n 1 145 LYS n 1 146 GLY n 1 147 VAL n 1 148 TYR n 1 149 TYR n 1 150 ASP n 1 151 GLU n 1 152 SER n 1 153 CYS n 1 154 ASN n 1 155 SER n 1 156 ASP n 1 157 ASN n 1 158 LEU n 1 159 ASN n 1 160 HIS n 1 161 ALA n 1 162 VAL n 1 163 LEU n 1 164 ALA n 1 165 VAL n 1 166 GLY n 1 167 TYR n 1 168 GLY n 1 169 ILE n 1 170 GLN n 1 171 LYS n 1 172 GLY n 1 173 ASN n 1 174 LYS n 1 175 HIS n 1 176 TRP n 1 177 ILE n 1 178 ILE n 1 179 LYS n 1 180 ASN n 1 181 SER n 1 182 TRP n 1 183 GLY n 1 184 GLU n 1 185 ASN n 1 186 TRP n 1 187 GLY n 1 188 ASN n 1 189 LYS n 1 190 GLY n 1 191 TYR n 1 192 ILE n 1 193 LEU n 1 194 MET n 1 195 ALA n 1 196 ARG n 1 197 ASN n 1 198 LYS n 1 199 ASN n 1 200 ASN n 1 201 ALA n 1 202 CYS n 1 203 GLY n 1 204 ILE n 1 205 ALA n 1 206 ASN n 1 207 LEU n 1 208 ALA n 1 209 SER n 1 210 PHE n 1 211 PRO n 1 212 LYS n 1 213 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CTSK, CTSO, CTSO2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 O96 non-polymer . 'N-[(1S)-3-amino-1-ethyl-2,3-dioxopropyl]-2-chloro-4-(pyridin-2-ylmethoxy)-3-(trifluoromethyl)benzamide' ? 'C19 H17 Cl F3 N3 O4' 443.804 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 3 3 ASP ASP A . n A 1 2 SER 2 4 4 SER SER A . n A 1 3 VAL 3 5 5 VAL VAL A . n A 1 4 ASP 4 6 6 ASP ASP A . n A 1 5 TYR 5 7 7 TYR TYR A . n A 1 6 ARG 6 8 8 ARG ARG A . n A 1 7 LYS 7 9 9 LYS LYS A . n A 1 8 LYS 8 10 10 LYS LYS A . n A 1 9 GLY 9 11 11 GLY GLY A . n A 1 10 TYR 10 12 12 TYR TYR A . n A 1 11 VAL 11 13 13 VAL VAL A . n A 1 12 THR 12 14 14 THR THR A . n A 1 13 PRO 13 15 15 PRO PRO A . n A 1 14 VAL 14 16 16 VAL VAL A . n A 1 15 LYS 15 17 17 LYS LYS A . n A 1 16 ASN 16 18 18 ASN ASN A . n A 1 17 GLN 17 19 19 GLN GLN A . n A 1 18 GLY 18 20 20 GLY GLY A . n A 1 19 GLN 19 21 21 GLN GLN A . n A 1 20 CYS 20 22 22 CYS CYS A . n A 1 21 GLY 21 23 23 GLY GLY A . n A 1 22 SER 22 24 24 SER SER A . n A 1 23 CYS 23 25 25 CYS CYS A . n A 1 24 TRP 24 26 26 TRP TRP A . n A 1 25 ALA 25 27 27 ALA ALA A . n A 1 26 PHE 26 28 28 PHE PHE A . n A 1 27 SER 27 29 29 SER SER A . n A 1 28 SER 28 30 30 SER SER A . n A 1 29 VAL 29 31 31 VAL VAL A . n A 1 30 GLY 30 32 32 GLY GLY A . n A 1 31 ALA 31 33 33 ALA ALA A . n A 1 32 LEU 32 34 34 LEU LEU A . n A 1 33 GLU 33 35 35 GLU GLU A . n A 1 34 GLY 34 36 36 GLY GLY A . n A 1 35 GLN 35 37 37 GLN GLN A . n A 1 36 LEU 36 38 38 LEU LEU A . n A 1 37 LYS 37 39 39 LYS LYS A . n A 1 38 LYS 38 40 40 LYS LYS A . n A 1 39 LYS 39 41 41 LYS LYS A . n A 1 40 THR 40 42 42 THR THR A . n A 1 41 GLY 41 43 43 GLY GLY A . n A 1 42 LYS 42 44 44 LYS LYS A . n A 1 43 LEU 43 45 45 LEU LEU A . n A 1 44 LEU 44 46 46 LEU LEU A . n A 1 45 ASN 45 47 47 ASN ASN A . n A 1 46 LEU 46 48 48 LEU LEU A . n A 1 47 SER 47 49 49 SER SER A . n A 1 48 PRO 48 50 50 PRO PRO A . n A 1 49 GLN 49 51 51 GLN GLN A . n A 1 50 ASN 50 52 52 ASN ASN A . n A 1 51 LEU 51 53 53 LEU LEU A . n A 1 52 VAL 52 54 54 VAL VAL A . n A 1 53 ASP 53 55 55 ASP ASP A . n A 1 54 CYS 54 56 56 CYS CYS A . n A 1 55 VAL 55 57 57 VAL VAL A . n A 1 56 SER 56 58 58 SER SER A . n A 1 57 GLU 57 59 59 GLU GLU A . n A 1 58 ASN 58 60 60 ASN ASN A . n A 1 59 ASP 59 61 61 ASP ASP A . n A 1 60 GLY 60 62 62 GLY GLY A . n A 1 61 CYS 61 63 63 CYS CYS A . n A 1 62 GLY 62 64 64 GLY GLY A . n A 1 63 GLY 63 65 65 GLY GLY A . n A 1 64 GLY 64 66 66 GLY GLY A . n A 1 65 TYR 65 67 67 TYR TYR A . n A 1 66 MET 66 68 68 MET MET A . n A 1 67 THR 67 69 69 THR THR A . n A 1 68 ASN 68 70 70 ASN ASN A . n A 1 69 ALA 69 71 71 ALA ALA A . n A 1 70 PHE 70 72 72 PHE PHE A . n A 1 71 GLN 71 73 73 GLN GLN A . n A 1 72 TYR 72 74 74 TYR TYR A . n A 1 73 VAL 73 75 75 VAL VAL A . n A 1 74 GLN 74 76 76 GLN GLN A . n A 1 75 LYS 75 77 77 LYS LYS A . n A 1 76 ASN 76 78 78 ASN ASN A . n A 1 77 ARG 77 79 79 ARG ARG A . n A 1 78 GLY 78 80 80 GLY GLY A . n A 1 79 ILE 79 81 81 ILE ILE A . n A 1 80 ASP 80 82 82 ASP ASP A . n A 1 81 SER 81 83 83 SER SER A . n A 1 82 GLU 82 84 84 GLU GLU A . n A 1 83 ASP 83 85 85 ASP ASP A . n A 1 84 ALA 84 86 86 ALA ALA A . n A 1 85 TYR 85 87 87 TYR TYR A . n A 1 86 PRO 86 88 88 PRO PRO A . n A 1 87 TYR 87 89 89 TYR TYR A . n A 1 88 VAL 88 90 90 VAL VAL A . n A 1 89 GLY 89 91 91 GLY GLY A . n A 1 90 GLN 90 92 92 GLN GLN A . n A 1 91 GLU 91 93 93 GLU GLU A . n A 1 92 GLU 92 94 94 GLU GLU A . n A 1 93 SER 93 95 95 SER SER A . n A 1 94 CYS 94 96 96 CYS CYS A . n A 1 95 MET 95 97 97 MET MET A . n A 1 96 TYR 96 98 98 TYR TYR A . n A 1 97 ASN 97 99 99 ASN ASN A . n A 1 98 PRO 98 100 100 PRO PRO A . n A 1 99 THR 99 101 101 THR THR A . n A 1 100 GLY 100 102 102 GLY GLY A . n A 1 101 LYS 101 103 103 LYS LYS A . n A 1 102 ALA 102 104 104 ALA ALA A . n A 1 103 ALA 103 105 105 ALA ALA A . n A 1 104 LYS 104 106 106 LYS LYS A . n A 1 105 CYS 105 107 107 CYS CYS A . n A 1 106 ARG 106 108 108 ARG ARG A . n A 1 107 GLY 107 109 109 GLY GLY A . n A 1 108 TYR 108 110 110 TYR TYR A . n A 1 109 ARG 109 111 111 ARG ARG A . n A 1 110 GLU 110 112 112 GLU GLU A . n A 1 111 ILE 111 113 113 ILE ILE A . n A 1 112 PRO 112 114 114 PRO PRO A . n A 1 113 GLU 113 115 115 GLU GLU A . n A 1 114 GLY 114 116 116 GLY GLY A . n A 1 115 ASN 115 117 117 ASN ASN A . n A 1 116 GLU 116 118 118 GLU GLU A . n A 1 117 LYS 117 119 119 LYS LYS A . n A 1 118 ALA 118 120 120 ALA ALA A . n A 1 119 LEU 119 121 121 LEU LEU A . n A 1 120 LYS 120 122 122 LYS LYS A . n A 1 121 ARG 121 123 123 ARG ARG A . n A 1 122 ALA 122 124 124 ALA ALA A . n A 1 123 VAL 123 125 125 VAL VAL A . n A 1 124 ALA 124 126 126 ALA ALA A . n A 1 125 ARG 125 127 127 ARG ARG A . n A 1 126 VAL 126 128 128 VAL VAL A . n A 1 127 GLY 127 129 129 GLY GLY A . n A 1 128 PRO 128 130 130 PRO PRO A . n A 1 129 VAL 129 131 131 VAL VAL A . n A 1 130 SER 130 132 132 SER SER A . n A 1 131 VAL 131 133 133 VAL VAL A . n A 1 132 ALA 132 134 134 ALA ALA A . n A 1 133 ILE 133 135 135 ILE ILE A . n A 1 134 ASP 134 136 136 ASP ASP A . n A 1 135 ALA 135 137 137 ALA ALA A . n A 1 136 SER 136 138 138 SER SER A . n A 1 137 LEU 137 139 139 LEU LEU A . n A 1 138 THR 138 140 140 THR THR A . n A 1 139 SER 139 141 141 SER SER A . n A 1 140 PHE 140 142 142 PHE PHE A . n A 1 141 GLN 141 143 143 GLN GLN A . n A 1 142 PHE 142 144 144 PHE PHE A . n A 1 143 TYR 143 145 145 TYR TYR A . n A 1 144 SER 144 146 146 SER SER A . n A 1 145 LYS 145 147 147 LYS LYS A . n A 1 146 GLY 146 148 148 GLY GLY A . n A 1 147 VAL 147 149 149 VAL VAL A . n A 1 148 TYR 148 150 150 TYR TYR A . n A 1 149 TYR 149 151 151 TYR TYR A . n A 1 150 ASP 150 152 152 ASP ASP A . n A 1 151 GLU 151 153 153 GLU GLU A . n A 1 152 SER 152 154 154 SER SER A . n A 1 153 CYS 153 155 155 CYS CYS A . n A 1 154 ASN 154 156 156 ASN ASN A . n A 1 155 SER 155 157 157 SER SER A . n A 1 156 ASP 156 158 158 ASP ASP A . n A 1 157 ASN 157 159 159 ASN ASN A . n A 1 158 LEU 158 160 160 LEU LEU A . n A 1 159 ASN 159 161 161 ASN ASN A . n A 1 160 HIS 160 162 162 HIS HIS A . n A 1 161 ALA 161 163 163 ALA ALA A . n A 1 162 VAL 162 164 164 VAL VAL A . n A 1 163 LEU 163 165 165 LEU LEU A . n A 1 164 ALA 164 166 166 ALA ALA A . n A 1 165 VAL 165 167 167 VAL VAL A . n A 1 166 GLY 166 168 168 GLY GLY A . n A 1 167 TYR 167 169 169 TYR TYR A . n A 1 168 GLY 168 170 170 GLY GLY A . n A 1 169 ILE 169 171 171 ILE ILE A . n A 1 170 GLN 170 172 172 GLN GLN A . n A 1 171 LYS 171 173 173 LYS LYS A . n A 1 172 GLY 172 174 174 GLY GLY A . n A 1 173 ASN 173 175 175 ASN ASN A . n A 1 174 LYS 174 176 176 LYS LYS A . n A 1 175 HIS 175 177 177 HIS HIS A . n A 1 176 TRP 176 178 178 TRP TRP A . n A 1 177 ILE 177 179 179 ILE ILE A . n A 1 178 ILE 178 180 180 ILE ILE A . n A 1 179 LYS 179 181 181 LYS LYS A . n A 1 180 ASN 180 182 182 ASN ASN A . n A 1 181 SER 181 183 183 SER SER A . n A 1 182 TRP 182 184 184 TRP TRP A . n A 1 183 GLY 183 185 185 GLY GLY A . n A 1 184 GLU 184 186 186 GLU GLU A . n A 1 185 ASN 185 187 187 ASN ASN A . n A 1 186 TRP 186 188 188 TRP TRP A . n A 1 187 GLY 187 189 189 GLY GLY A . n A 1 188 ASN 188 190 190 ASN ASN A . n A 1 189 LYS 189 191 191 LYS LYS A . n A 1 190 GLY 190 192 192 GLY GLY A . n A 1 191 TYR 191 193 193 TYR TYR A . n A 1 192 ILE 192 194 194 ILE ILE A . n A 1 193 LEU 193 195 195 LEU LEU A . n A 1 194 MET 194 196 196 MET MET A . n A 1 195 ALA 195 197 197 ALA ALA A . n A 1 196 ARG 196 198 198 ARG ARG A . n A 1 197 ASN 197 199 199 ASN ASN A . n A 1 198 LYS 198 200 200 LYS LYS A . n A 1 199 ASN 199 201 201 ASN ASN A . n A 1 200 ASN 200 202 202 ASN ASN A . n A 1 201 ALA 201 203 203 ALA ALA A . n A 1 202 CYS 202 204 204 CYS CYS A . n A 1 203 GLY 203 205 205 GLY GLY A . n A 1 204 ILE 204 206 206 ILE ILE A . n A 1 205 ALA 205 207 207 ALA ALA A . n A 1 206 ASN 206 208 208 ASN ASN A . n A 1 207 LEU 207 209 209 LEU LEU A . n A 1 208 ALA 208 210 210 ALA ALA A . n A 1 209 SER 209 211 211 SER SER A . n A 1 210 PHE 210 212 212 PHE PHE A . n A 1 211 PRO 211 213 213 PRO PRO A . n A 1 212 LYS 212 214 214 LYS LYS A . n A 1 213 MET 213 215 215 MET MET A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O96 1 1 1 O96 O96 A . C 3 SO4 1 216 1 SO4 SO4 A . D 3 SO4 1 2 2 SO4 SO4 A . E 4 HOH 1 217 1 HOH HOH A . E 4 HOH 2 218 2 HOH HOH A . E 4 HOH 3 219 3 HOH HOH A . E 4 HOH 4 220 4 HOH HOH A . E 4 HOH 5 221 5 HOH HOH A . E 4 HOH 6 222 6 HOH HOH A . E 4 HOH 7 223 7 HOH HOH A . E 4 HOH 8 224 9 HOH HOH A . E 4 HOH 9 225 10 HOH HOH A . E 4 HOH 10 226 11 HOH HOH A . E 4 HOH 11 227 12 HOH HOH A . E 4 HOH 12 228 13 HOH HOH A . E 4 HOH 13 229 14 HOH HOH A . E 4 HOH 14 230 15 HOH HOH A . E 4 HOH 15 231 16 HOH HOH A . E 4 HOH 16 232 17 HOH HOH A . E 4 HOH 17 233 18 HOH HOH A . E 4 HOH 18 234 19 HOH HOH A . E 4 HOH 19 235 20 HOH HOH A . E 4 HOH 20 236 21 HOH HOH A . E 4 HOH 21 237 22 HOH HOH A . E 4 HOH 22 238 23 HOH HOH A . E 4 HOH 23 239 24 HOH HOH A . E 4 HOH 24 240 25 HOH HOH A . E 4 HOH 25 241 26 HOH HOH A . E 4 HOH 26 242 27 HOH HOH A . E 4 HOH 27 243 28 HOH HOH A . E 4 HOH 28 244 29 HOH HOH A . E 4 HOH 29 245 30 HOH HOH A . E 4 HOH 30 246 31 HOH HOH A . E 4 HOH 31 247 32 HOH HOH A . E 4 HOH 32 248 33 HOH HOH A . E 4 HOH 33 249 34 HOH HOH A . E 4 HOH 34 250 35 HOH HOH A . E 4 HOH 35 251 36 HOH HOH A . E 4 HOH 36 252 37 HOH HOH A . E 4 HOH 37 253 38 HOH HOH A . E 4 HOH 38 254 39 HOH HOH A . E 4 HOH 39 255 40 HOH HOH A . E 4 HOH 40 256 41 HOH HOH A . E 4 HOH 41 257 42 HOH HOH A . E 4 HOH 42 258 43 HOH HOH A . E 4 HOH 43 259 44 HOH HOH A . E 4 HOH 44 260 45 HOH HOH A . E 4 HOH 45 261 47 HOH HOH A . E 4 HOH 46 262 48 HOH HOH A . E 4 HOH 47 263 49 HOH HOH A . E 4 HOH 48 264 50 HOH HOH A . E 4 HOH 49 265 51 HOH HOH A . E 4 HOH 50 266 53 HOH HOH A . E 4 HOH 51 267 54 HOH HOH A . E 4 HOH 52 268 55 HOH HOH A . E 4 HOH 53 269 56 HOH HOH A . E 4 HOH 54 270 57 HOH HOH A . E 4 HOH 55 271 58 HOH HOH A . E 4 HOH 56 272 59 HOH HOH A . E 4 HOH 57 273 60 HOH HOH A . E 4 HOH 58 274 61 HOH HOH A . E 4 HOH 59 275 62 HOH HOH A . E 4 HOH 60 276 63 HOH HOH A . E 4 HOH 61 277 64 HOH HOH A . E 4 HOH 62 278 65 HOH HOH A . E 4 HOH 63 279 67 HOH HOH A . E 4 HOH 64 280 69 HOH HOH A . E 4 HOH 65 281 70 HOH HOH A . E 4 HOH 66 282 71 HOH HOH A . E 4 HOH 67 283 72 HOH HOH A . E 4 HOH 68 284 73 HOH HOH A . E 4 HOH 69 285 74 HOH HOH A . E 4 HOH 70 286 75 HOH HOH A . E 4 HOH 71 287 76 HOH HOH A . E 4 HOH 72 288 77 HOH HOH A . E 4 HOH 73 289 78 HOH HOH A . E 4 HOH 74 290 79 HOH HOH A . E 4 HOH 75 291 80 HOH HOH A . E 4 HOH 76 292 81 HOH HOH A . E 4 HOH 77 293 82 HOH HOH A . E 4 HOH 78 294 84 HOH HOH A . E 4 HOH 79 295 85 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 d*TREK 'data reduction' . ? 4 d*TREK 'data scaling' . ? 5 # _cell.entry_id 3OVZ _cell.length_a 55.741 _cell.length_b 55.741 _cell.length_c 128.916 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3OVZ _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3OVZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.02 _exptl_crystal.density_percent_sol 38.61 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;0 mM NaAcetate pH=4.0, 0.3 M NaCl, 20% PEG4000, 0.2 M (NH4)2SO4, pH=2.9, 4% Methanol, Cryoprotectant composition:20% PEG4000, 0.1M (NH4)2SO4 pH=2.9, 4% Methanol, 20% PEG 400, pH 5, cocrystallization, hanging drop, temperature 398K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2008-02-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3OVZ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 55.740 _reflns.d_resolution_high 2.020 _reflns.number_obs 14051 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.02 _reflns_shell.d_res_low 2.09 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3OVZ _refine.ls_number_reflns_obs 13991 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 51.16 _refine.ls_d_res_high 2.02 _refine.ls_percent_reflns_obs 99.7 _refine.ls_R_factor_obs 0.247 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.244 _refine.ls_R_factor_R_free 0.308 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 698 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.902 _refine.B_iso_mean 35.26 _refine.aniso_B[1][1] 0.99000 _refine.aniso_B[2][2] 0.99000 _refine.aniso_B[3][3] -1.98000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'In-house cathepsin K structure' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.204 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 7.597 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1637 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 79 _refine_hist.number_atoms_total 1756 _refine_hist.d_res_high 2.02 _refine_hist.d_res_low 51.16 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 1738 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1176 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.785 1.966 ? 2355 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.052 3.005 ? 2859 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.198 5.000 ? 219 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 40.592 25.366 ? 82 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.138 15.000 ? 288 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.198 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.104 0.200 ? 236 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1976 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 344 'X-RAY DIFFRACTION' ? r_nbd_refined 0.215 0.200 ? 355 'X-RAY DIFFRACTION' ? r_nbd_other 0.211 0.200 ? 1190 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.187 0.200 ? 824 'X-RAY DIFFRACTION' ? r_nbtor_other 0.092 0.200 ? 878 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.160 0.200 ? 84 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.276 0.200 ? 21 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.300 0.200 ? 48 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.257 0.200 ? 7 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.917 1.500 ? 1366 'X-RAY DIFFRACTION' ? r_mcbond_other 0.171 1.500 ? 449 'X-RAY DIFFRACTION' ? r_mcangle_it 1.106 2.000 ? 1686 'X-RAY DIFFRACTION' ? r_scbond_it 1.891 3.000 ? 831 'X-RAY DIFFRACTION' ? r_scangle_it 2.502 4.500 ? 665 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.02 _refine_ls_shell.d_res_low 2.07 _refine_ls_shell.number_reflns_R_work 975 _refine_ls_shell.R_factor_R_work 0.307 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.4290 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 55 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _database_PDB_matrix.entry_id 3OVZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3OVZ _struct.title 'Cathepsin K in complex with a covalent inhibitor with a ketoamide warhead' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3OVZ _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text ;Cathepsin K, hydrolase, covalent inhibitor, ketoamide warhead, Ligand forms covalent bond to Cys25, Lysosomes, HYDROLASE-HYDROLASE INHIBITOR complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CATK_HUMAN _struct_ref.pdbx_db_accession P43235 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;YRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDA YPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLA VGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM ; _struct_ref.pdbx_align_begin 121 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3OVZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 213 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P43235 _struct_ref_seq.db_align_beg 121 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 329 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 7 _struct_ref_seq.pdbx_auth_seq_align_end 215 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3OVZ ASP A 1 ? UNP P43235 ? ? 'expression tag' 3 1 1 3OVZ SER A 2 ? UNP P43235 ? ? 'expression tag' 4 2 1 3OVZ VAL A 3 ? UNP P43235 ? ? 'expression tag' 5 3 1 3OVZ ASP A 4 ? UNP P43235 ? ? 'expression tag' 6 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 6 ? GLY A 9 ? ARG A 8 GLY A 11 5 ? 4 HELX_P HELX_P2 2 SER A 22 ? GLY A 41 ? SER A 24 GLY A 43 1 ? 20 HELX_P HELX_P3 3 SER A 47 ? VAL A 55 ? SER A 49 VAL A 57 1 ? 9 HELX_P HELX_P4 4 ASP A 59 ? GLY A 63 ? ASP A 61 GLY A 65 5 ? 5 HELX_P HELX_P5 5 TYR A 65 ? ASN A 76 ? TYR A 67 ASN A 78 1 ? 12 HELX_P HELX_P6 6 ASN A 97 ? THR A 99 ? ASN A 99 THR A 101 5 ? 3 HELX_P HELX_P7 7 ASN A 115 ? VAL A 126 ? ASN A 117 VAL A 128 1 ? 12 HELX_P HELX_P8 8 LEU A 137 ? PHE A 142 ? LEU A 139 PHE A 144 1 ? 6 HELX_P HELX_P9 9 ASN A 200 ? ILE A 204 ? ASN A 202 ILE A 206 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 20 SG ? ? ? 1_555 A CYS 61 SG ? ? A CYS 22 A CYS 63 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf2 disulf ? ? A CYS 54 SG ? ? ? 1_555 A CYS 94 SG ? ? A CYS 56 A CYS 96 1_555 ? ? ? ? ? ? ? 2.008 ? ? disulf3 disulf ? ? A CYS 153 SG ? ? ? 1_555 A CYS 202 SG ? ? A CYS 155 A CYS 204 1_555 ? ? ? ? ? ? ? 2.010 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 3 ? ASP A 4 ? VAL A 5 ASP A 6 A 2 HIS A 160 ? GLN A 170 ? HIS A 162 GLN A 172 A 3 VAL A 129 ? ILE A 133 ? VAL A 131 ILE A 135 B 1 VAL A 3 ? ASP A 4 ? VAL A 5 ASP A 6 B 2 HIS A 160 ? GLN A 170 ? HIS A 162 GLN A 172 B 3 ASN A 173 ? LYS A 179 ? ASN A 175 LYS A 181 B 4 TYR A 191 ? ALA A 195 ? TYR A 193 ALA A 197 B 5 VAL A 147 ? TYR A 148 ? VAL A 149 TYR A 150 C 1 ILE A 79 ? ASP A 80 ? ILE A 81 ASP A 82 C 2 LYS A 101 ? ALA A 103 ? LYS A 103 ALA A 105 D 1 TYR A 108 ? GLU A 110 ? TYR A 110 GLU A 112 D 2 SER A 209 ? PRO A 211 ? SER A 211 PRO A 213 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 3 ? N VAL A 5 O TYR A 167 ? O TYR A 169 A 2 3 O VAL A 162 ? O VAL A 164 N VAL A 131 ? N VAL A 133 B 1 2 N VAL A 3 ? N VAL A 5 O TYR A 167 ? O TYR A 169 B 2 3 N GLN A 170 ? N GLN A 172 O ASN A 173 ? O ASN A 175 B 3 4 N ILE A 178 ? N ILE A 180 O ILE A 192 ? O ILE A 194 B 4 5 O LEU A 193 ? O LEU A 195 N TYR A 148 ? N TYR A 150 C 1 2 N ILE A 79 ? N ILE A 81 O ALA A 102 ? O ALA A 104 D 1 2 N ARG A 109 ? N ARG A 111 O PHE A 210 ? O PHE A 212 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A O96 1 ? 16 'BINDING SITE FOR RESIDUE O96 A 1' AC2 Software A SO4 216 ? 7 'BINDING SITE FOR RESIDUE SO4 A 216' AC3 Software A SO4 2 ? 4 'BINDING SITE FOR RESIDUE SO4 A 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 GLN A 17 ? GLN A 19 . ? 1_555 ? 2 AC1 16 GLY A 21 ? GLY A 23 . ? 1_555 ? 3 AC1 16 SER A 22 ? SER A 24 . ? 1_555 ? 4 AC1 16 CYS A 23 ? CYS A 25 . ? 1_555 ? 5 AC1 16 TRP A 24 ? TRP A 26 . ? 1_555 ? 6 AC1 16 GLY A 63 ? GLY A 65 . ? 1_555 ? 7 AC1 16 GLY A 64 ? GLY A 66 . ? 1_555 ? 8 AC1 16 TYR A 65 ? TYR A 67 . ? 1_555 ? 9 AC1 16 LYS A 101 ? LYS A 103 . ? 5_554 ? 10 AC1 16 ALA A 132 ? ALA A 134 . ? 1_555 ? 11 AC1 16 LEU A 158 ? LEU A 160 . ? 1_555 ? 12 AC1 16 ASN A 159 ? ASN A 161 . ? 1_555 ? 13 AC1 16 HIS A 160 ? HIS A 162 . ? 1_555 ? 14 AC1 16 ALA A 161 ? ALA A 163 . ? 1_555 ? 15 AC1 16 LEU A 207 ? LEU A 209 . ? 1_555 ? 16 AC1 16 HOH E . ? HOH A 242 . ? 1_555 ? 17 AC2 7 ASN A 16 ? ASN A 18 . ? 1_555 ? 18 AC2 7 ARG A 106 ? ARG A 108 . ? 4_545 ? 19 AC2 7 ARG A 109 ? ARG A 111 . ? 4_545 ? 20 AC2 7 GLY A 183 ? GLY A 185 . ? 1_555 ? 21 AC2 7 GLU A 184 ? GLU A 186 . ? 1_555 ? 22 AC2 7 ASN A 185 ? ASN A 187 . ? 1_555 ? 23 AC2 7 LYS A 212 ? LYS A 214 . ? 4_545 ? 24 AC3 4 LYS A 120 ? LYS A 122 . ? 1_555 ? 25 AC3 4 LYS A 174 ? LYS A 176 . ? 1_555 ? 26 AC3 4 ARG A 196 ? ARG A 198 . ? 1_555 ? 27 AC3 4 ASN A 197 ? ASN A 199 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 SG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 CYS _pdbx_validate_close_contact.auth_seq_id_1 25 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 C5 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 O96 _pdbx_validate_close_contact.auth_seq_id_2 1 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A LEU 38 ? ? CB A LEU 38 ? ? CG A LEU 38 ? ? 129.60 115.30 14.30 2.30 N 2 1 NE A ARG 127 ? ? CZ A ARG 127 ? ? NH1 A ARG 127 ? ? 124.61 120.30 4.31 0.50 N 3 1 NE A ARG 127 ? ? CZ A ARG 127 ? ? NH2 A ARG 127 ? ? 117.04 120.30 -3.26 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 173 ? ? 36.95 54.53 2 1 ASN A 199 ? ? 70.34 31.87 3 1 LYS A 200 ? ? -119.22 50.98 4 1 LEU A 209 ? ? -147.48 53.11 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 O96 N1 N N N 250 O96 C4 C N N 251 O96 C5 C N N 252 O96 C6 C N S 253 O96 N8 N N N 254 O96 C10 C N N 255 O96 C11 C Y N 256 O96 C12 C Y N 257 O96 C14 C Y N 258 O96 C16 C Y N 259 O96 C17 C Y N 260 O96 C18 C Y N 261 O96 CL19 CL N N 262 O96 C20 C N N 263 O96 F21 F N N 264 O96 F22 F N N 265 O96 F23 F N N 266 O96 O24 O N N 267 O96 C25 C N N 268 O96 C28 C Y N 269 O96 N29 N Y N 270 O96 C30 C Y N 271 O96 C32 C Y N 272 O96 C34 C Y N 273 O96 C36 C Y N 274 O96 O38 O N N 275 O96 C39 C N N 276 O96 C42 C N N 277 O96 O46 O N N 278 O96 O47 O N N 279 O96 HN1 H N N 280 O96 HN1A H N N 281 O96 H6 H N N 282 O96 HN8 H N N 283 O96 H12 H N N 284 O96 H14 H N N 285 O96 H25 H N N 286 O96 H25A H N N 287 O96 H30 H N N 288 O96 H32 H N N 289 O96 H34 H N N 290 O96 H36 H N N 291 O96 H39 H N N 292 O96 H39A H N N 293 O96 H42 H N N 294 O96 H42A H N N 295 O96 H42B H N N 296 PHE N N N N 297 PHE CA C N S 298 PHE C C N N 299 PHE O O N N 300 PHE CB C N N 301 PHE CG C Y N 302 PHE CD1 C Y N 303 PHE CD2 C Y N 304 PHE CE1 C Y N 305 PHE CE2 C Y N 306 PHE CZ C Y N 307 PHE OXT O N N 308 PHE H H N N 309 PHE H2 H N N 310 PHE HA H N N 311 PHE HB2 H N N 312 PHE HB3 H N N 313 PHE HD1 H N N 314 PHE HD2 H N N 315 PHE HE1 H N N 316 PHE HE2 H N N 317 PHE HZ H N N 318 PHE HXT H N N 319 PRO N N N N 320 PRO CA C N S 321 PRO C C N N 322 PRO O O N N 323 PRO CB C N N 324 PRO CG C N N 325 PRO CD C N N 326 PRO OXT O N N 327 PRO H H N N 328 PRO HA H N N 329 PRO HB2 H N N 330 PRO HB3 H N N 331 PRO HG2 H N N 332 PRO HG3 H N N 333 PRO HD2 H N N 334 PRO HD3 H N N 335 PRO HXT H N N 336 SER N N N N 337 SER CA C N S 338 SER C C N N 339 SER O O N N 340 SER CB C N N 341 SER OG O N N 342 SER OXT O N N 343 SER H H N N 344 SER H2 H N N 345 SER HA H N N 346 SER HB2 H N N 347 SER HB3 H N N 348 SER HG H N N 349 SER HXT H N N 350 SO4 S S N N 351 SO4 O1 O N N 352 SO4 O2 O N N 353 SO4 O3 O N N 354 SO4 O4 O N N 355 THR N N N N 356 THR CA C N S 357 THR C C N N 358 THR O O N N 359 THR CB C N R 360 THR OG1 O N N 361 THR CG2 C N N 362 THR OXT O N N 363 THR H H N N 364 THR H2 H N N 365 THR HA H N N 366 THR HB H N N 367 THR HG1 H N N 368 THR HG21 H N N 369 THR HG22 H N N 370 THR HG23 H N N 371 THR HXT H N N 372 TRP N N N N 373 TRP CA C N S 374 TRP C C N N 375 TRP O O N N 376 TRP CB C N N 377 TRP CG C Y N 378 TRP CD1 C Y N 379 TRP CD2 C Y N 380 TRP NE1 N Y N 381 TRP CE2 C Y N 382 TRP CE3 C Y N 383 TRP CZ2 C Y N 384 TRP CZ3 C Y N 385 TRP CH2 C Y N 386 TRP OXT O N N 387 TRP H H N N 388 TRP H2 H N N 389 TRP HA H N N 390 TRP HB2 H N N 391 TRP HB3 H N N 392 TRP HD1 H N N 393 TRP HE1 H N N 394 TRP HE3 H N N 395 TRP HZ2 H N N 396 TRP HZ3 H N N 397 TRP HH2 H N N 398 TRP HXT H N N 399 TYR N N N N 400 TYR CA C N S 401 TYR C C N N 402 TYR O O N N 403 TYR CB C N N 404 TYR CG C Y N 405 TYR CD1 C Y N 406 TYR CD2 C Y N 407 TYR CE1 C Y N 408 TYR CE2 C Y N 409 TYR CZ C Y N 410 TYR OH O N N 411 TYR OXT O N N 412 TYR H H N N 413 TYR H2 H N N 414 TYR HA H N N 415 TYR HB2 H N N 416 TYR HB3 H N N 417 TYR HD1 H N N 418 TYR HD2 H N N 419 TYR HE1 H N N 420 TYR HE2 H N N 421 TYR HH H N N 422 TYR HXT H N N 423 VAL N N N N 424 VAL CA C N S 425 VAL C C N N 426 VAL O O N N 427 VAL CB C N N 428 VAL CG1 C N N 429 VAL CG2 C N N 430 VAL OXT O N N 431 VAL H H N N 432 VAL H2 H N N 433 VAL HA H N N 434 VAL HB H N N 435 VAL HG11 H N N 436 VAL HG12 H N N 437 VAL HG13 H N N 438 VAL HG21 H N N 439 VAL HG22 H N N 440 VAL HG23 H N N 441 VAL HXT H N N 442 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 O96 N1 C4 sing N N 237 O96 N1 HN1 sing N N 238 O96 N1 HN1A sing N N 239 O96 C4 O47 doub N N 240 O96 C5 C4 sing N N 241 O96 C5 C6 sing N N 242 O96 C6 C39 sing N N 243 O96 C6 H6 sing N N 244 O96 N8 C6 sing N N 245 O96 N8 C10 sing N N 246 O96 N8 HN8 sing N N 247 O96 C10 O38 doub N N 248 O96 C11 C10 sing N N 249 O96 C11 C12 sing Y N 250 O96 C12 H12 sing N N 251 O96 C14 C12 doub Y N 252 O96 C14 H14 sing N N 253 O96 C16 C14 sing Y N 254 O96 C17 C16 doub Y N 255 O96 C17 C18 sing Y N 256 O96 C18 C11 doub Y N 257 O96 CL19 C18 sing N N 258 O96 C20 C17 sing N N 259 O96 C20 F23 sing N N 260 O96 F21 C20 sing N N 261 O96 F22 C20 sing N N 262 O96 O24 C16 sing N N 263 O96 O24 C25 sing N N 264 O96 C25 H25 sing N N 265 O96 C25 H25A sing N N 266 O96 C28 C25 sing N N 267 O96 C28 C36 sing Y N 268 O96 N29 C28 doub Y N 269 O96 C30 N29 sing Y N 270 O96 C30 C32 doub Y N 271 O96 C30 H30 sing N N 272 O96 C32 C34 sing Y N 273 O96 C32 H32 sing N N 274 O96 C34 C36 doub Y N 275 O96 C34 H34 sing N N 276 O96 C36 H36 sing N N 277 O96 C39 C42 sing N N 278 O96 C39 H39 sing N N 279 O96 C39 H39A sing N N 280 O96 C42 H42 sing N N 281 O96 C42 H42A sing N N 282 O96 C42 H42B sing N N 283 O96 O46 C5 doub N N 284 PHE N CA sing N N 285 PHE N H sing N N 286 PHE N H2 sing N N 287 PHE CA C sing N N 288 PHE CA CB sing N N 289 PHE CA HA sing N N 290 PHE C O doub N N 291 PHE C OXT sing N N 292 PHE CB CG sing N N 293 PHE CB HB2 sing N N 294 PHE CB HB3 sing N N 295 PHE CG CD1 doub Y N 296 PHE CG CD2 sing Y N 297 PHE CD1 CE1 sing Y N 298 PHE CD1 HD1 sing N N 299 PHE CD2 CE2 doub Y N 300 PHE CD2 HD2 sing N N 301 PHE CE1 CZ doub Y N 302 PHE CE1 HE1 sing N N 303 PHE CE2 CZ sing Y N 304 PHE CE2 HE2 sing N N 305 PHE CZ HZ sing N N 306 PHE OXT HXT sing N N 307 PRO N CA sing N N 308 PRO N CD sing N N 309 PRO N H sing N N 310 PRO CA C sing N N 311 PRO CA CB sing N N 312 PRO CA HA sing N N 313 PRO C O doub N N 314 PRO C OXT sing N N 315 PRO CB CG sing N N 316 PRO CB HB2 sing N N 317 PRO CB HB3 sing N N 318 PRO CG CD sing N N 319 PRO CG HG2 sing N N 320 PRO CG HG3 sing N N 321 PRO CD HD2 sing N N 322 PRO CD HD3 sing N N 323 PRO OXT HXT sing N N 324 SER N CA sing N N 325 SER N H sing N N 326 SER N H2 sing N N 327 SER CA C sing N N 328 SER CA CB sing N N 329 SER CA HA sing N N 330 SER C O doub N N 331 SER C OXT sing N N 332 SER CB OG sing N N 333 SER CB HB2 sing N N 334 SER CB HB3 sing N N 335 SER OG HG sing N N 336 SER OXT HXT sing N N 337 SO4 S O1 doub N N 338 SO4 S O2 doub N N 339 SO4 S O3 sing N N 340 SO4 S O4 sing N N 341 THR N CA sing N N 342 THR N H sing N N 343 THR N H2 sing N N 344 THR CA C sing N N 345 THR CA CB sing N N 346 THR CA HA sing N N 347 THR C O doub N N 348 THR C OXT sing N N 349 THR CB OG1 sing N N 350 THR CB CG2 sing N N 351 THR CB HB sing N N 352 THR OG1 HG1 sing N N 353 THR CG2 HG21 sing N N 354 THR CG2 HG22 sing N N 355 THR CG2 HG23 sing N N 356 THR OXT HXT sing N N 357 TRP N CA sing N N 358 TRP N H sing N N 359 TRP N H2 sing N N 360 TRP CA C sing N N 361 TRP CA CB sing N N 362 TRP CA HA sing N N 363 TRP C O doub N N 364 TRP C OXT sing N N 365 TRP CB CG sing N N 366 TRP CB HB2 sing N N 367 TRP CB HB3 sing N N 368 TRP CG CD1 doub Y N 369 TRP CG CD2 sing Y N 370 TRP CD1 NE1 sing Y N 371 TRP CD1 HD1 sing N N 372 TRP CD2 CE2 doub Y N 373 TRP CD2 CE3 sing Y N 374 TRP NE1 CE2 sing Y N 375 TRP NE1 HE1 sing N N 376 TRP CE2 CZ2 sing Y N 377 TRP CE3 CZ3 doub Y N 378 TRP CE3 HE3 sing N N 379 TRP CZ2 CH2 doub Y N 380 TRP CZ2 HZ2 sing N N 381 TRP CZ3 CH2 sing Y N 382 TRP CZ3 HZ3 sing N N 383 TRP CH2 HH2 sing N N 384 TRP OXT HXT sing N N 385 TYR N CA sing N N 386 TYR N H sing N N 387 TYR N H2 sing N N 388 TYR CA C sing N N 389 TYR CA CB sing N N 390 TYR CA HA sing N N 391 TYR C O doub N N 392 TYR C OXT sing N N 393 TYR CB CG sing N N 394 TYR CB HB2 sing N N 395 TYR CB HB3 sing N N 396 TYR CG CD1 doub Y N 397 TYR CG CD2 sing Y N 398 TYR CD1 CE1 sing Y N 399 TYR CD1 HD1 sing N N 400 TYR CD2 CE2 doub Y N 401 TYR CD2 HD2 sing N N 402 TYR CE1 CZ doub Y N 403 TYR CE1 HE1 sing N N 404 TYR CE2 CZ sing Y N 405 TYR CE2 HE2 sing N N 406 TYR CZ OH sing N N 407 TYR OH HH sing N N 408 TYR OXT HXT sing N N 409 VAL N CA sing N N 410 VAL N H sing N N 411 VAL N H2 sing N N 412 VAL CA C sing N N 413 VAL CA CB sing N N 414 VAL CA HA sing N N 415 VAL C O doub N N 416 VAL C OXT sing N N 417 VAL CB CG1 sing N N 418 VAL CB CG2 sing N N 419 VAL CB HB sing N N 420 VAL CG1 HG11 sing N N 421 VAL CG1 HG12 sing N N 422 VAL CG1 HG13 sing N N 423 VAL CG2 HG21 sing N N 424 VAL CG2 HG22 sing N N 425 VAL CG2 HG23 sing N N 426 VAL OXT HXT sing N N 427 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name ? _pdbx_initial_refinement_model.details 'In-house cathepsin K structure' # _atom_sites.entry_id 3OVZ _atom_sites.fract_transf_matrix[1][1] 0.017940 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017940 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007757 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL F N O S # loop_