data_3P4B # _entry.id 3P4B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3P4B pdb_00003p4b 10.2210/pdb3p4b/pdb NDB NA0810 ? ? RCSB RCSB061938 ? ? WWPDB D_1000061938 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3P4C . unspecified PDB 3P4D . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3P4B _pdbx_database_status.recvd_initial_deposition_date 2010-10-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pallan, P.S.' 1 'Greene, E.M.' 2 'Jicman, P.A.' 3 'Pandey, R.K.' 4 'Manoharan, M.' 5 'Rozners, E.' 6 'Egli, M.' 7 # _citation.id primary _citation.title ;Unexpected origins of the enhanced pairing affinity of 2'-fluoro-modified RNA. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 39 _citation.page_first 3482 _citation.page_last 3495 _citation.year 2011 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21183463 _citation.pdbx_database_id_DOI 10.1093/nar/gkq1270 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pallan, P.S.' 1 ? primary 'Greene, E.M.' 2 ? primary 'Jicman, P.A.' 3 ? primary 'Pandey, R.K.' 4 ? primary 'Manoharan, M.' 5 ? primary 'Rozners, E.' 6 ? primary 'Egli, M.' 7 ? # _cell.entry_id 3P4B _cell.length_a 43.383 _cell.length_b 43.383 _cell.length_c 60.987 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3P4B _symmetry.space_group_name_H-M 'P 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*(CFZ)P*GP*(AF2)P*AP*(UFT)P*UP*(CFZ)P*G)-3'" 2534.525 6 ? ? ? ? 2 non-polymer syn 'BARIUM ION' 137.327 2 ? ? ? ? 3 water nat water 18.015 141 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(CFZ)G(AF2)A(UFT)U(CFZ)G' _entity_poly.pdbx_seq_one_letter_code_can XGXAUUXG _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CFZ n 1 2 G n 1 3 AF2 n 1 4 A n 1 5 UFT n 1 6 U n 1 7 CFZ n 1 8 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Chemically synthesized modified RNA octamer' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3P4B _struct_ref.pdbx_db_accession 3P4B _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code XGXAXUXG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3P4B A 1 ? 8 ? 3P4B 101 ? 108 ? 101 108 2 1 3P4B B 1 ? 8 ? 3P4B 201 ? 208 ? 201 208 3 1 3P4B C 1 ? 8 ? 3P4B 301 ? 308 ? 301 308 4 1 3P4B D 1 ? 8 ? 3P4B 401 ? 408 ? 401 408 5 1 3P4B E 1 ? 8 ? 3P4B 501 ? 508 ? 501 508 6 1 3P4B F 1 ? 8 ? 3P4B 601 ? 608 ? 601 608 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 AF2 'DNA linking' n ;2'-deoxy-2'-fluoroadenosine 5'-(dihydrogen phosphate) ; ? 'C10 H13 F N5 O6 P' 349.212 BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 CFZ 'DNA linking' n ;2'-deoxy-2'-fluorocytidine 5'-(dihydrogen phosphate) ; ? 'C9 H13 F N3 O7 P' 325.188 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 UFT 'DNA linking' n ;2'-deoxy-2'-fluorouridine 5'-(dihydrogen phosphate) ; ? 'C9 H12 F N2 O8 P' 326.172 # _exptl.entry_id 3P4B _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_percent_sol 43.55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;Sodium cacodylate (40 mM, pH 6.0), sodium chloride (80 mM), barium chloride (20 mM), spermine tetrahydrochloride (12 mM), and 2-methyl-2,4-pentanediol (MPD; 10% (v/v)), equilibrated against a reservoir of MPD (1 mL, 35%), VAPOR DIFFUSION, HANGING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2008-11-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97872 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97872 # _reflns.entry_id 3P4B _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.45 _reflns.number_obs 21294 _reflns.number_all 22793 _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 39 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.48 _reflns_shell.percent_possible_all 81.8 _reflns_shell.Rmerge_I_obs 0.42 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.34 _reflns_shell.pdbx_redundancy 2.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1005 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3P4B _refine.ls_number_reflns_obs 21294 _refine.ls_number_reflns_all 22442 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 21.69 _refine.ls_d_res_high 1.45 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.19962 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19710 _refine.ls_R_factor_R_free 0.25083 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1141 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.B_iso_mean 18.807 _refine.aniso_B[1][1] 0.80 _refine.aniso_B[2][2] 0.80 _refine.aniso_B[3][3] -1.20 _refine.aniso_B[1][2] 0.40 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3P4A' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.085 _refine.overall_SU_ML 0.056 _refine.overall_SU_B 3.288 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1002 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 141 _refine_hist.number_atoms_total 1145 _refine_hist.d_res_high 1.45 _refine_hist.d_res_low 21.69 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.021 ? 1096 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.077 3.000 ? 1692 'X-RAY DIFFRACTION' ? r_chiral_restr 0.115 0.200 ? 226 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 490 'X-RAY DIFFRACTION' ? r_scbond_it 4.153 3.000 ? 1096 'X-RAY DIFFRACTION' ? r_scangle_it 4.966 4.500 ? 1692 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 3.503 3.000 ? 1096 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.450 _refine_ls_shell.d_res_low 1.488 _refine_ls_shell.number_reflns_R_work 1343 _refine_ls_shell.R_factor_R_work 0.293 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.329 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 68 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3P4B _struct.title ;Alternatingly modified 2'Fluoro RNA octamer f/rA2U2-P3 ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3P4B _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;RNA, 2'-FLUORO-RNA, O2'-MODIFICATION, OCTAMER, 2'-fluoro 2'-deoxycytidine, 2'-fluoro 2'-deoxyadenosine, 2'-fluoro 2'-deoxyuridine, siRNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A CFZ 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A CFZ 101 A G 102 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale both ? A G 2 "O3'" ? ? ? 1_555 A AF2 3 P ? ? A G 102 A AF2 103 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale3 covale one ? A AF2 3 "O3'" ? ? ? 1_555 A A 4 P ? ? A AF2 103 A A 104 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale4 covale both ? A A 4 "O3'" ? ? ? 1_555 A UFT 5 P ? ? A A 104 A UFT 105 1_555 ? ? ? ? ? ? ? 1.636 ? ? covale5 covale both ? A UFT 5 "O3'" ? ? ? 1_555 A U 6 P ? ? A UFT 105 A U 106 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale6 covale both ? A U 6 "O3'" ? ? ? 1_555 A CFZ 7 P ? ? A U 106 A CFZ 107 1_555 ? ? ? ? ? ? ? 1.632 ? ? covale7 covale both ? A CFZ 7 "O3'" ? ? ? 1_555 A G 8 P ? ? A CFZ 107 A G 108 1_555 ? ? ? ? ? ? ? 1.622 ? ? covale8 covale both ? B CFZ 1 "O3'" ? ? ? 1_555 B G 2 P ? ? B CFZ 201 B G 202 1_555 ? ? ? ? ? ? ? 1.584 ? ? covale9 covale both ? B G 2 "O3'" ? ? ? 1_555 B AF2 3 P ? ? B G 202 B AF2 203 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale10 covale one ? B AF2 3 "O3'" ? ? ? 1_555 B A 4 P ? ? B AF2 203 B A 204 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale11 covale both ? B A 4 "O3'" ? ? ? 1_555 B UFT 5 P ? ? B A 204 B UFT 205 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale12 covale both ? B UFT 5 "O3'" ? ? ? 1_555 B U 6 P ? ? B UFT 205 B U 206 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale13 covale both ? B U 6 "O3'" ? ? ? 1_555 B CFZ 7 P ? ? B U 206 B CFZ 207 1_555 ? ? ? ? ? ? ? 1.584 ? ? covale14 covale both ? B CFZ 7 "O3'" ? ? ? 1_555 B G 8 P ? ? B CFZ 207 B G 208 1_555 ? ? ? ? ? ? ? 1.564 ? ? covale15 covale both ? C CFZ 1 "O3'" ? ? ? 1_555 C G 2 P ? ? C CFZ 301 C G 302 1_555 ? ? ? ? ? ? ? 1.564 ? ? covale16 covale both ? C G 2 "O3'" ? ? ? 1_555 C AF2 3 P ? ? C G 302 C AF2 303 1_555 ? ? ? ? ? ? ? 1.583 ? ? covale17 covale one ? C AF2 3 "O3'" ? ? ? 1_555 C A 4 P ? ? C AF2 303 C A 304 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale18 covale both ? C A 4 "O3'" ? ? ? 1_555 C UFT 5 P ? ? C A 304 C UFT 305 1_555 ? ? ? ? ? ? ? 1.575 ? ? covale19 covale both ? C UFT 5 "O3'" ? ? ? 1_555 C U 6 P ? ? C UFT 305 C U 306 1_555 ? ? ? ? ? ? ? 1.645 ? ? covale20 covale both ? C U 6 "O3'" ? ? ? 1_555 C CFZ 7 P ? ? C U 306 C CFZ 307 1_555 ? ? ? ? ? ? ? 1.588 ? ? covale21 covale both ? C CFZ 7 "O3'" ? ? ? 1_555 C G 8 P ? ? C CFZ 307 C G 308 1_555 ? ? ? ? ? ? ? 1.549 ? ? covale22 covale both ? D CFZ 1 "O3'" ? ? ? 1_555 D G 2 P ? ? D CFZ 401 D G 402 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale23 covale both ? D G 2 "O3'" ? ? ? 1_555 D AF2 3 P ? ? D G 402 D AF2 403 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale24 covale one ? D AF2 3 "O3'" ? ? ? 1_555 D A 4 P ? ? D AF2 403 D A 404 1_555 ? ? ? ? ? ? ? 1.629 ? ? covale25 covale both ? D A 4 "O3'" ? ? ? 1_555 D UFT 5 P ? ? D A 404 D UFT 405 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale26 covale both ? D UFT 5 "O3'" ? ? ? 1_555 D U 6 P ? ? D UFT 405 D U 406 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale27 covale both ? D U 6 "O3'" ? ? ? 1_555 D CFZ 7 P ? ? D U 406 D CFZ 407 1_555 ? ? ? ? ? ? ? 1.627 ? ? covale28 covale both ? D CFZ 7 "O3'" ? ? ? 1_555 D G 8 P ? ? D CFZ 407 D G 408 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale29 covale both ? E CFZ 1 "O3'" ? ? ? 1_555 E G 2 P ? ? E CFZ 501 E G 502 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale30 covale both ? E G 2 "O3'" ? ? ? 1_555 E AF2 3 P ? ? E G 502 E AF2 503 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale31 covale one ? E AF2 3 "O3'" ? ? ? 1_555 E A 4 P ? ? E AF2 503 E A 504 1_555 ? ? ? ? ? ? ? 1.631 ? ? covale32 covale both ? E A 4 "O3'" ? ? ? 1_555 E UFT 5 P ? ? E A 504 E UFT 505 1_555 ? ? ? ? ? ? ? 1.633 ? ? covale33 covale both ? E UFT 5 "O3'" ? ? ? 1_555 E U 6 P ? ? E UFT 505 E U 506 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale34 covale both ? E U 6 "O3'" ? ? ? 1_555 E CFZ 7 P ? ? E U 506 E CFZ 507 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale35 covale both ? E CFZ 7 "O3'" ? ? ? 1_555 E G 8 P ? ? E CFZ 507 E G 508 1_555 ? ? ? ? ? ? ? 1.648 ? ? covale36 covale both ? F CFZ 1 "O3'" ? ? ? 1_555 F G 2 P ? ? F CFZ 601 F G 602 1_555 ? ? ? ? ? ? ? 1.581 ? ? covale37 covale both ? F G 2 "O3'" ? ? ? 1_555 F AF2 3 P ? ? F G 602 F AF2 603 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale38 covale one ? F AF2 3 "O3'" ? ? ? 1_555 F A 4 P ? ? F AF2 603 F A 604 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale39 covale both ? F A 4 "O3'" ? ? ? 1_555 F UFT 5 P ? ? F A 604 F UFT 605 1_555 ? ? ? ? ? ? ? 1.641 ? ? covale40 covale both ? F UFT 5 "O3'" ? ? ? 1_555 F U 6 P ? ? F UFT 605 F U 606 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale41 covale both ? F U 6 "O3'" ? ? ? 1_555 F CFZ 7 P ? ? F U 606 F CFZ 607 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale42 covale both ? F CFZ 7 "O3'" ? ? ? 1_555 F G 8 P ? ? F CFZ 607 F G 608 1_555 ? ? ? ? ? ? ? 1.596 ? ? metalc1 metalc ? ? A UFT 5 O4 ? ? ? 1_555 G BA . BA ? ? A UFT 105 A BA 701 1_555 ? ? ? ? ? ? ? 3.003 ? ? metalc2 metalc ? ? G BA . BA ? ? ? 1_555 I HOH . O ? ? A BA 701 A HOH 729 1_555 ? ? ? ? ? ? ? 2.797 ? ? metalc3 metalc ? ? D UFT 5 O4 ? ? ? 1_555 H BA . BA ? ? D UFT 405 D BA 702 1_555 ? ? ? ? ? ? ? 3.008 ? ? metalc4 metalc ? ? H BA . BA ? ? ? 1_555 L HOH . O ? ? D BA 702 D HOH 734 1_555 ? ? ? ? ? ? ? 2.765 ? ? metalc5 metalc ? ? H BA . BA ? ? ? 1_555 L HOH . O ? ? D BA 702 D HOH 825 1_555 ? ? ? ? ? ? ? 2.520 ? ? hydrog1 hydrog ? ? A A 4 N1 ? ? ? 1_555 B UFT 5 N3 ? ? A A 104 B UFT 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A A 4 N6 ? ? ? 1_555 B UFT 5 O4 ? ? A A 104 B UFT 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A UFT 5 N3 ? ? ? 1_555 B A 4 N1 ? ? A UFT 105 B A 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A UFT 5 O4 ? ? ? 1_555 B A 4 N6 ? ? A UFT 105 B A 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C A 4 N1 ? ? ? 1_555 D UFT 5 N3 ? ? C A 304 D UFT 405 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C A 4 N6 ? ? ? 1_555 D UFT 5 O4 ? ? C A 304 D UFT 405 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C UFT 5 N3 ? ? ? 1_555 D A 4 N1 ? ? C UFT 305 D A 404 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C UFT 5 O4 ? ? ? 1_555 D A 4 N6 ? ? C UFT 305 D A 404 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? E A 4 N1 ? ? ? 1_555 F UFT 5 N3 ? ? E A 504 F UFT 605 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? E A 4 N6 ? ? ? 1_555 F UFT 5 O4 ? ? E A 504 F UFT 605 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? E UFT 5 N3 ? ? ? 1_555 F A 4 N1 ? ? E UFT 505 F A 604 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? E UFT 5 O4 ? ? ? 1_555 F A 4 N6 ? ? E UFT 505 F A 604 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BA 701 ? 3 'BINDING SITE FOR RESIDUE BA A 701' AC2 Software D BA 702 ? 3 'BINDING SITE FOR RESIDUE BA D 702' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 UFT A 5 ? UFT A 105 . ? 1_555 ? 2 AC1 3 HOH I . ? HOH A 729 . ? 1_555 ? 3 AC1 3 HOH I . ? HOH A 775 . ? 1_555 ? 4 AC2 3 UFT D 5 ? UFT D 405 . ? 1_555 ? 5 AC2 3 HOH L . ? HOH D 734 . ? 1_555 ? 6 AC2 3 HOH L . ? HOH D 825 . ? 1_555 ? # _database_PDB_matrix.entry_id 3P4B _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3P4B _atom_sites.fract_transf_matrix[1][1] 0.023051 _atom_sites.fract_transf_matrix[1][2] 0.013308 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026616 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016397 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C F N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CFZ 1 101 101 CFZ CFZ A . n A 1 2 G 2 102 102 G G A . n A 1 3 AF2 3 103 103 AF2 AF2 A . n A 1 4 A 4 104 104 A A A . n A 1 5 UFT 5 105 105 UFT UFT A . n A 1 6 U 6 106 106 U U A . n A 1 7 CFZ 7 107 107 CFZ CFZ A . n A 1 8 G 8 108 108 G G A . n B 1 1 CFZ 1 201 201 CFZ CFZ B . n B 1 2 G 2 202 202 G G B . n B 1 3 AF2 3 203 203 AF2 AF2 B . n B 1 4 A 4 204 204 A A B . n B 1 5 UFT 5 205 205 UFT UFT B . n B 1 6 U 6 206 206 U U B . n B 1 7 CFZ 7 207 207 CFZ CFZ B . n B 1 8 G 8 208 208 G G B . n C 1 1 CFZ 1 301 301 CFZ CFZ C . n C 1 2 G 2 302 302 G G C . n C 1 3 AF2 3 303 303 AF2 AF2 C . n C 1 4 A 4 304 304 A A C . n C 1 5 UFT 5 305 305 UFT UFT C . n C 1 6 U 6 306 306 U U C . n C 1 7 CFZ 7 307 307 CFZ CFZ C . n C 1 8 G 8 308 308 G G C . n D 1 1 CFZ 1 401 401 CFZ CFZ D . n D 1 2 G 2 402 402 G G D . n D 1 3 AF2 3 403 403 AF2 AF2 D . n D 1 4 A 4 404 404 A A D . n D 1 5 UFT 5 405 405 UFT UFT D . n D 1 6 U 6 406 406 U U D . n D 1 7 CFZ 7 407 407 CFZ CFZ D . n D 1 8 G 8 408 408 G G D . n E 1 1 CFZ 1 501 501 CFZ CFZ E . n E 1 2 G 2 502 502 G G E . n E 1 3 AF2 3 503 503 AF2 AF2 E . n E 1 4 A 4 504 504 A A E . n E 1 5 UFT 5 505 505 UFT UFT E . n E 1 6 U 6 506 506 U U E . n E 1 7 CFZ 7 507 507 CFZ CFZ E . n E 1 8 G 8 508 508 G G E . n F 1 1 CFZ 1 601 601 CFZ CFZ F . n F 1 2 G 2 602 602 G G F . n F 1 3 AF2 3 603 603 AF2 AF2 F . n F 1 4 A 4 604 604 A A F . n F 1 5 UFT 5 605 605 UFT UFT F . n F 1 6 U 6 606 606 U U F . n F 1 7 CFZ 7 607 607 CFZ CFZ F . n F 1 8 G 8 608 608 G G F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 BA 1 701 701 BA BA A . H 2 BA 1 702 702 BA BA D . I 3 HOH 1 704 704 HOH HOH A . I 3 HOH 2 712 712 HOH HOH A . I 3 HOH 3 715 715 HOH HOH A . I 3 HOH 4 721 721 HOH HOH A . I 3 HOH 5 729 729 HOH HOH A . I 3 HOH 6 739 739 HOH HOH A . I 3 HOH 7 741 741 HOH HOH A . I 3 HOH 8 766 766 HOH HOH A . I 3 HOH 9 772 772 HOH HOH A . I 3 HOH 10 775 775 HOH HOH A . I 3 HOH 11 781 781 HOH HOH A . I 3 HOH 12 782 782 HOH HOH A . I 3 HOH 13 786 786 HOH HOH A . I 3 HOH 14 803 803 HOH HOH A . I 3 HOH 15 806 806 HOH HOH A . I 3 HOH 16 807 807 HOH HOH A . I 3 HOH 17 814 814 HOH HOH A . I 3 HOH 18 815 815 HOH HOH A . I 3 HOH 19 824 824 HOH HOH A . I 3 HOH 20 826 826 HOH HOH A . I 3 HOH 21 830 830 HOH HOH A . I 3 HOH 22 834 834 HOH HOH A . I 3 HOH 23 840 840 HOH HOH A . I 3 HOH 24 841 841 HOH HOH A . J 3 HOH 1 706 706 HOH HOH B . J 3 HOH 2 707 707 HOH HOH B . J 3 HOH 3 708 708 HOH HOH B . J 3 HOH 4 717 717 HOH HOH B . J 3 HOH 5 718 718 HOH HOH B . J 3 HOH 6 720 720 HOH HOH B . J 3 HOH 7 723 723 HOH HOH B . J 3 HOH 8 725 725 HOH HOH B . J 3 HOH 9 727 727 HOH HOH B . J 3 HOH 10 728 728 HOH HOH B . J 3 HOH 11 732 732 HOH HOH B . J 3 HOH 12 738 738 HOH HOH B . J 3 HOH 13 746 746 HOH HOH B . J 3 HOH 14 752 752 HOH HOH B . J 3 HOH 15 760 760 HOH HOH B . J 3 HOH 16 763 763 HOH HOH B . J 3 HOH 17 765 765 HOH HOH B . J 3 HOH 18 769 769 HOH HOH B . J 3 HOH 19 774 774 HOH HOH B . J 3 HOH 20 776 776 HOH HOH B . J 3 HOH 21 783 783 HOH HOH B . J 3 HOH 22 808 808 HOH HOH B . J 3 HOH 23 817 817 HOH HOH B . J 3 HOH 24 818 818 HOH HOH B . J 3 HOH 25 822 822 HOH HOH B . J 3 HOH 26 827 827 HOH HOH B . J 3 HOH 27 833 833 HOH HOH B . K 3 HOH 1 705 705 HOH HOH C . K 3 HOH 2 709 709 HOH HOH C . K 3 HOH 3 710 710 HOH HOH C . K 3 HOH 4 719 719 HOH HOH C . K 3 HOH 5 724 724 HOH HOH C . K 3 HOH 6 726 726 HOH HOH C . K 3 HOH 7 743 743 HOH HOH C . K 3 HOH 8 744 744 HOH HOH C . K 3 HOH 9 745 745 HOH HOH C . K 3 HOH 10 747 747 HOH HOH C . K 3 HOH 11 749 749 HOH HOH C . K 3 HOH 12 754 754 HOH HOH C . K 3 HOH 13 758 758 HOH HOH C . K 3 HOH 14 762 762 HOH HOH C . K 3 HOH 15 778 778 HOH HOH C . K 3 HOH 16 789 789 HOH HOH C . K 3 HOH 17 790 790 HOH HOH C . K 3 HOH 18 794 794 HOH HOH C . K 3 HOH 19 796 796 HOH HOH C . K 3 HOH 20 799 799 HOH HOH C . K 3 HOH 21 804 804 HOH HOH C . K 3 HOH 22 809 809 HOH HOH C . K 3 HOH 23 813 813 HOH HOH C . K 3 HOH 24 819 819 HOH HOH C . K 3 HOH 25 820 820 HOH HOH C . K 3 HOH 26 821 821 HOH HOH C . K 3 HOH 27 828 828 HOH HOH C . K 3 HOH 28 838 838 HOH HOH C . K 3 HOH 29 839 839 HOH HOH C . K 3 HOH 30 844 844 HOH HOH C . L 3 HOH 1 703 703 HOH HOH D . L 3 HOH 2 713 713 HOH HOH D . L 3 HOH 3 714 714 HOH HOH D . L 3 HOH 4 731 731 HOH HOH D . L 3 HOH 5 734 734 HOH HOH D . L 3 HOH 6 740 740 HOH HOH D . L 3 HOH 7 750 750 HOH HOH D . L 3 HOH 8 759 759 HOH HOH D . L 3 HOH 9 767 767 HOH HOH D . L 3 HOH 10 780 780 HOH HOH D . L 3 HOH 11 792 792 HOH HOH D . L 3 HOH 12 797 797 HOH HOH D . L 3 HOH 13 798 798 HOH HOH D . L 3 HOH 14 800 800 HOH HOH D . L 3 HOH 15 805 805 HOH HOH D . L 3 HOH 16 810 810 HOH HOH D . L 3 HOH 17 823 823 HOH HOH D . L 3 HOH 18 825 825 HOH HOH D . L 3 HOH 19 842 842 HOH HOH D . L 3 HOH 20 843 843 HOH HOH D . M 3 HOH 1 711 711 HOH HOH E . M 3 HOH 2 735 735 HOH HOH E . M 3 HOH 3 736 736 HOH HOH E . M 3 HOH 4 748 748 HOH HOH E . M 3 HOH 5 753 753 HOH HOH E . M 3 HOH 6 756 756 HOH HOH E . M 3 HOH 7 764 764 HOH HOH E . M 3 HOH 8 768 768 HOH HOH E . M 3 HOH 9 770 770 HOH HOH E . M 3 HOH 10 777 777 HOH HOH E . M 3 HOH 11 779 779 HOH HOH E . M 3 HOH 12 784 784 HOH HOH E . M 3 HOH 13 785 785 HOH HOH E . M 3 HOH 14 788 788 HOH HOH E . M 3 HOH 15 795 795 HOH HOH E . M 3 HOH 16 811 811 HOH HOH E . M 3 HOH 17 812 812 HOH HOH E . M 3 HOH 18 829 829 HOH HOH E . M 3 HOH 19 832 832 HOH HOH E . M 3 HOH 20 836 836 HOH HOH E . M 3 HOH 21 837 837 HOH HOH E . N 3 HOH 1 716 716 HOH HOH F . N 3 HOH 2 722 722 HOH HOH F . N 3 HOH 3 730 730 HOH HOH F . N 3 HOH 4 733 733 HOH HOH F . N 3 HOH 5 737 737 HOH HOH F . N 3 HOH 6 742 742 HOH HOH F . N 3 HOH 7 751 751 HOH HOH F . N 3 HOH 8 755 755 HOH HOH F . N 3 HOH 9 757 757 HOH HOH F . N 3 HOH 10 761 761 HOH HOH F . N 3 HOH 11 771 771 HOH HOH F . N 3 HOH 12 773 773 HOH HOH F . N 3 HOH 13 787 787 HOH HOH F . N 3 HOH 14 791 791 HOH HOH F . N 3 HOH 15 793 793 HOH HOH F . N 3 HOH 16 801 801 HOH HOH F . N 3 HOH 17 802 802 HOH HOH F . N 3 HOH 18 816 816 HOH HOH F . N 3 HOH 19 831 831 HOH HOH F . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CFZ 1 A CFZ 101 ? DC ? 2 A AF2 3 A AF2 103 ? DA ? 3 A UFT 5 A UFT 105 ? DU ? 4 A CFZ 7 A CFZ 107 ? DC ? 5 B CFZ 1 B CFZ 201 ? DC ? 6 B AF2 3 B AF2 203 ? DA ? 7 B UFT 5 B UFT 205 ? DU ? 8 B CFZ 7 B CFZ 207 ? DC ? 9 C CFZ 1 C CFZ 301 ? DC ? 10 C AF2 3 C AF2 303 ? DA ? 11 C UFT 5 C UFT 305 ? DU ? 12 C CFZ 7 C CFZ 307 ? DC ? 13 D CFZ 1 D CFZ 401 ? DC ? 14 D AF2 3 D AF2 403 ? DA ? 15 D UFT 5 D UFT 405 ? DU ? 16 D CFZ 7 D CFZ 407 ? DC ? 17 E CFZ 1 E CFZ 501 ? DC ? 18 E AF2 3 E AF2 503 ? DA ? 19 E UFT 5 E UFT 505 ? DU ? 20 E CFZ 7 E CFZ 507 ? DC ? 21 F CFZ 1 F CFZ 601 ? DC ? 22 F AF2 3 F AF2 603 ? DA ? 23 F UFT 5 F UFT 605 ? DU ? 24 F CFZ 7 F CFZ 607 ? DC ? # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,G,I,J 2 1 C,D,H,K,L 3 1 E,F,M,N # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 803 ? I HOH . 2 1 B HOH 769 ? J HOH . 3 1 B HOH 822 ? J HOH . 4 1 C HOH 743 ? K HOH . 5 1 C HOH 744 ? K HOH . 6 1 F HOH 831 ? N HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A UFT 5 ? A UFT 105 ? 1_555 BA ? G BA . ? A BA 701 ? 1_555 O ? I HOH . ? A HOH 729 ? 1_555 72.5 ? 2 O4 ? D UFT 5 ? D UFT 405 ? 1_555 BA ? H BA . ? D BA 702 ? 1_555 O ? L HOH . ? D HOH 734 ? 1_555 71.2 ? 3 O4 ? D UFT 5 ? D UFT 405 ? 1_555 BA ? H BA . ? D BA 702 ? 1_555 O ? L HOH . ? D HOH 825 ? 1_555 80.0 ? 4 O ? L HOH . ? D HOH 734 ? 1_555 BA ? H BA . ? D BA 702 ? 1_555 O ? L HOH . ? D HOH 825 ? 1_555 59.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-01-05 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' pdbx_struct_special_symmetry 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.value' 21 3 'Structure model' '_struct_conn.pdbx_dist_value' 22 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 23 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 31 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -0.6160 14.0012 0.5898 0.0513 0.0441 0.0491 0.0074 -0.0242 -0.0371 1.0840 3.1172 0.8509 0.0666 -1.0359 -0.5205 0.0145 0.0404 -0.1650 -0.2232 0.0367 0.1827 0.0569 0.0611 -0.0512 'X-RAY DIFFRACTION' 2 ? refined -0.8417 10.9764 -21.0515 0.0474 0.0444 0.0551 -0.0058 0.0272 -0.0430 1.2227 3.3141 1.2268 -0.0957 1.1926 -0.5788 0.0193 -0.0529 0.1928 0.2360 0.0567 0.2027 -0.0614 0.0911 -0.0760 'X-RAY DIFFRACTION' 3 ? refined 7.9514 12.5463 20.3729 0.0531 0.0238 0.0656 0.0011 0.0011 0.0014 0.9392 3.3597 0.1700 -0.0895 -0.0623 1.3100 0.2481 0.0061 0.0039 0.0106 -0.1537 -0.2427 -0.0041 -0.1091 -0.0944 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 101 ? ? X 108 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 201 ? ? X 208 ? ? ? ? 'X-RAY DIFFRACTION' 3 2 A 301 ? ? X 308 ? ? ? ? 'X-RAY DIFFRACTION' 4 2 A 401 ? ? X 408 ? ? ? ? 'X-RAY DIFFRACTION' 5 3 A 501 ? ? X 508 ? ? ? ? 'X-RAY DIFFRACTION' 6 3 A 601 ? ? X 608 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 MOLREP phasing . ? 2 CCP4 'model building' . ? 3 REFMAC refinement 5.5.0109 ? 4 HKL-2000 'data reduction' . ? 5 HKL-2000 'data scaling' . ? 6 CCP4 phasing . ? 7 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O D HOH 731 ? ? O D HOH 798 ? ? 2.19 2 1 O A HOH 721 ? ? O A HOH 830 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C2 B A 204 ? ? N3 B A 204 ? ? 1.385 1.331 0.054 0.009 N 2 1 N7 B A 204 ? ? C8 B A 204 ? ? 1.367 1.311 0.056 0.007 N 3 1 "C2'" B U 206 ? ? "C1'" B U 206 ? ? 1.458 1.526 -0.068 0.008 N 4 1 N7 B G 208 ? ? C8 B G 208 ? ? 1.347 1.305 0.042 0.006 N 5 1 C2 C A 304 ? ? N3 C A 304 ? ? 1.402 1.331 0.071 0.009 N 6 1 N7 C A 304 ? ? C8 C A 304 ? ? 1.377 1.311 0.066 0.007 N 7 1 "C2'" C U 306 ? ? "C1'" C U 306 ? ? 1.453 1.526 -0.073 0.008 N 8 1 C6 D G 402 ? ? N1 D G 402 ? ? 1.436 1.391 0.045 0.007 N 9 1 C6 E G 502 ? ? O6 E G 502 ? ? 1.177 1.237 -0.060 0.009 N 10 1 "O5'" E U 506 ? ? "C5'" E U 506 ? ? 1.309 1.420 -0.111 0.009 N 11 1 N7 E G 508 ? ? C8 E G 508 ? ? 1.343 1.305 0.038 0.006 N 12 1 "O5'" F U 606 ? ? "C5'" F U 606 ? ? 1.096 1.420 -0.324 0.009 N 13 1 "O3'" F U 606 ? ? "C3'" F U 606 ? ? 1.561 1.427 0.134 0.012 N 14 1 N7 F G 608 ? ? C8 F G 608 ? ? 1.361 1.305 0.056 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 P E U 506 ? ? "O5'" E U 506 ? ? "C5'" E U 506 ? ? 132.90 120.90 12.00 1.60 N 2 1 "O4'" E U 506 ? ? "C1'" E U 506 ? ? N1 E U 506 ? ? 113.21 108.50 4.71 0.70 N 3 1 "C3'" E U 506 ? ? "O3'" E U 506 ? ? P E CFZ 507 ? ? 134.11 119.70 14.41 1.20 Y 4 1 P F U 606 ? ? "O5'" F U 606 ? ? "C5'" F U 606 ? ? 132.02 120.90 11.12 1.60 N 5 1 C2 F U 606 ? ? N1 F U 606 ? ? "C1'" F U 606 ? ? 110.37 117.70 -7.33 1.20 N 6 1 "C3'" F U 606 ? ? "O3'" F U 606 ? ? P F CFZ 607 ? ? 109.01 119.70 -10.69 1.20 Y # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U E 506 ? ? 0.059 'SIDE CHAIN' 2 1 U F 606 ? ? 0.060 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 E U 506 ? "C5'" ? E U 6 "C5'" 2 1 Y 0 E U 506 ? "C4'" ? E U 6 "C4'" 3 1 Y 0 E U 506 ? "O4'" ? E U 6 "O4'" 4 1 Y 0 E U 506 ? "C3'" ? E U 6 "C3'" 5 1 Y 0 E U 506 ? "C2'" ? E U 6 "C2'" 6 1 Y 0 E U 506 ? "O2'" ? E U 6 "O2'" 7 1 Y 0 E U 506 ? "C1'" ? E U 6 "C1'" 8 1 Y 0 F U 606 ? "C5'" ? F U 6 "C5'" 9 1 Y 0 F U 606 ? "C4'" ? F U 6 "C4'" 10 1 Y 0 F U 606 ? "O4'" ? F U 6 "O4'" 11 1 Y 0 F U 606 ? "C3'" ? F U 6 "C3'" 12 1 Y 0 F U 606 ? "C2'" ? F U 6 "C2'" 13 1 Y 0 F U 606 ? "O2'" ? F U 6 "O2'" 14 1 Y 0 F U 606 ? "C1'" ? F U 6 "C1'" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 AF2 F F N N 38 AF2 P P N N 39 AF2 N1 N Y N 40 AF2 C2 C Y N 41 AF2 N3 N Y N 42 AF2 C4 C Y N 43 AF2 C5 C Y N 44 AF2 C6 C Y N 45 AF2 N6 N N N 46 AF2 N7 N Y N 47 AF2 C8 C Y N 48 AF2 N9 N Y N 49 AF2 "C1'" C N R 50 AF2 OP2 O N N 51 AF2 "C2'" C N R 52 AF2 OP1 O N N 53 AF2 "C3'" C N R 54 AF2 "O3'" O N N 55 AF2 "C4'" C N R 56 AF2 "O4'" O N N 57 AF2 "C5'" C N N 58 AF2 "O5'" O N N 59 AF2 H2 H N N 60 AF2 H8 H N N 61 AF2 "H5'" H N N 62 AF2 "H5'A" H N N 63 AF2 "H1'" H N N 64 AF2 "H2'" H N N 65 AF2 "H3'" H N N 66 AF2 "H4'" H N N 67 AF2 HN6 H N N 68 AF2 HN6A H N N 69 AF2 HOP2 H N N 70 AF2 "HO3'" H N N 71 AF2 OP3 O N N 72 AF2 HOP3 H N N 73 BA BA BA N N 74 CFZ P P N N 75 CFZ N1 N N N 76 CFZ C2 C N N 77 CFZ O2 O N N 78 CFZ N3 N N N 79 CFZ C4 C N N 80 CFZ N4 N N N 81 CFZ C5 C N N 82 CFZ C6 C N N 83 CFZ "C1'" C N R 84 CFZ O1P O N N 85 CFZ "C2'" C N R 86 CFZ "F2'" F N N 87 CFZ O2P O N N 88 CFZ "C3'" C N R 89 CFZ "O3'" O N N 90 CFZ O3P O N N 91 CFZ "C4'" C N R 92 CFZ "O4'" O N N 93 CFZ "C5'" C N N 94 CFZ "O5'" O N N 95 CFZ HN4 H N N 96 CFZ HN4A H N N 97 CFZ H5 H N N 98 CFZ H6 H N N 99 CFZ "H1'" H N N 100 CFZ HO1P H N N 101 CFZ "H2'" H N N 102 CFZ "H3'" H N N 103 CFZ "HO3'" H N N 104 CFZ HO3P H N N 105 CFZ "H4'" H N N 106 CFZ "H5'" H N N 107 CFZ "H5'A" H N N 108 G OP3 O N N 109 G P P N N 110 G OP1 O N N 111 G OP2 O N N 112 G "O5'" O N N 113 G "C5'" C N N 114 G "C4'" C N R 115 G "O4'" O N N 116 G "C3'" C N S 117 G "O3'" O N N 118 G "C2'" C N R 119 G "O2'" O N N 120 G "C1'" C N R 121 G N9 N Y N 122 G C8 C Y N 123 G N7 N Y N 124 G C5 C Y N 125 G C6 C N N 126 G O6 O N N 127 G N1 N N N 128 G C2 C N N 129 G N2 N N N 130 G N3 N N N 131 G C4 C Y N 132 G HOP3 H N N 133 G HOP2 H N N 134 G "H5'" H N N 135 G "H5''" H N N 136 G "H4'" H N N 137 G "H3'" H N N 138 G "HO3'" H N N 139 G "H2'" H N N 140 G "HO2'" H N N 141 G "H1'" H N N 142 G H8 H N N 143 G H1 H N N 144 G H21 H N N 145 G H22 H N N 146 HOH O O N N 147 HOH H1 H N N 148 HOH H2 H N N 149 U OP3 O N N 150 U P P N N 151 U OP1 O N N 152 U OP2 O N N 153 U "O5'" O N N 154 U "C5'" C N N 155 U "C4'" C N R 156 U "O4'" O N N 157 U "C3'" C N S 158 U "O3'" O N N 159 U "C2'" C N R 160 U "O2'" O N N 161 U "C1'" C N R 162 U N1 N N N 163 U C2 C N N 164 U O2 O N N 165 U N3 N N N 166 U C4 C N N 167 U O4 O N N 168 U C5 C N N 169 U C6 C N N 170 U HOP3 H N N 171 U HOP2 H N N 172 U "H5'" H N N 173 U "H5''" H N N 174 U "H4'" H N N 175 U "H3'" H N N 176 U "HO3'" H N N 177 U "H2'" H N N 178 U "HO2'" H N N 179 U "H1'" H N N 180 U H3 H N N 181 U H5 H N N 182 U H6 H N N 183 UFT OP3 O N N 184 UFT P P N N 185 UFT OP1 O N N 186 UFT OP2 O N N 187 UFT "O5'" O N N 188 UFT N1 N N N 189 UFT C6 C N N 190 UFT C2 C N N 191 UFT O2 O N N 192 UFT N3 N N N 193 UFT C4 C N N 194 UFT O4 O N N 195 UFT C5 C N N 196 UFT "F2'" F N N 197 UFT "C2'" C N R 198 UFT "C5'" C N N 199 UFT "C4'" C N R 200 UFT "O4'" O N N 201 UFT "C1'" C N R 202 UFT "C3'" C N R 203 UFT "O3'" O N N 204 UFT HOP3 H N N 205 UFT HOP2 H N N 206 UFT H6 H N N 207 UFT H5 H N N 208 UFT "H2'" H N N 209 UFT "H5'" H N N 210 UFT "H5'A" H N N 211 UFT "H4'" H N N 212 UFT "H1'" H N N 213 UFT "H3'" H N N 214 UFT "HO3'" H N N 215 UFT HN3 H N N 216 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 AF2 F "C2'" sing N N 40 AF2 P OP1 doub N N 41 AF2 P OP2 sing N N 42 AF2 N1 C6 sing Y N 43 AF2 C2 N1 doub Y N 44 AF2 C2 N3 sing Y N 45 AF2 N3 C4 doub Y N 46 AF2 C4 N9 sing Y N 47 AF2 C4 C5 sing Y N 48 AF2 C5 N7 sing Y N 49 AF2 C6 C5 doub Y N 50 AF2 C6 N6 sing N N 51 AF2 N6 HN6A sing N N 52 AF2 C8 N7 doub Y N 53 AF2 C8 H8 sing N N 54 AF2 N9 C8 sing Y N 55 AF2 "C1'" N9 sing N N 56 AF2 "C1'" "C2'" sing N N 57 AF2 OP2 HOP2 sing N N 58 AF2 "C2'" "H2'" sing N N 59 AF2 "C2'" "C3'" sing N N 60 AF2 "C3'" "H3'" sing N N 61 AF2 "C3'" "O3'" sing N N 62 AF2 "O3'" "HO3'" sing N N 63 AF2 "C4'" "C3'" sing N N 64 AF2 "C4'" "C5'" sing N N 65 AF2 "O4'" "C1'" sing N N 66 AF2 "O4'" "C4'" sing N N 67 AF2 "C5'" "O5'" sing N N 68 AF2 "C5'" "H5'A" sing N N 69 AF2 "O5'" P sing N N 70 AF2 H2 C2 sing N N 71 AF2 "H5'" "C5'" sing N N 72 AF2 "H1'" "C1'" sing N N 73 AF2 "H4'" "C4'" sing N N 74 AF2 HN6 N6 sing N N 75 AF2 P OP3 sing N N 76 AF2 OP3 HOP3 sing N N 77 CFZ O2P P doub N N 78 CFZ P "O5'" sing N N 79 CFZ P O1P sing N N 80 CFZ P O3P sing N N 81 CFZ C6 N1 sing N N 82 CFZ C2 N1 sing N N 83 CFZ N1 "C1'" sing N N 84 CFZ N3 C2 sing N N 85 CFZ C2 O2 doub N N 86 CFZ C4 N3 doub N N 87 CFZ N4 C4 sing N N 88 CFZ C4 C5 sing N N 89 CFZ N4 HN4 sing N N 90 CFZ N4 HN4A sing N N 91 CFZ C5 C6 doub N N 92 CFZ C5 H5 sing N N 93 CFZ C6 H6 sing N N 94 CFZ "C2'" "C1'" sing N N 95 CFZ "C1'" "O4'" sing N N 96 CFZ "C1'" "H1'" sing N N 97 CFZ O1P HO1P sing N N 98 CFZ "C3'" "C2'" sing N N 99 CFZ "C2'" "F2'" sing N N 100 CFZ "C2'" "H2'" sing N N 101 CFZ "C3'" "O3'" sing N N 102 CFZ "C3'" "C4'" sing N N 103 CFZ "C3'" "H3'" sing N N 104 CFZ "O3'" "HO3'" sing N N 105 CFZ O3P HO3P sing N N 106 CFZ "O4'" "C4'" sing N N 107 CFZ "C5'" "C4'" sing N N 108 CFZ "C4'" "H4'" sing N N 109 CFZ "O5'" "C5'" sing N N 110 CFZ "C5'" "H5'" sing N N 111 CFZ "C5'" "H5'A" sing N N 112 G OP3 P sing N N 113 G OP3 HOP3 sing N N 114 G P OP1 doub N N 115 G P OP2 sing N N 116 G P "O5'" sing N N 117 G OP2 HOP2 sing N N 118 G "O5'" "C5'" sing N N 119 G "C5'" "C4'" sing N N 120 G "C5'" "H5'" sing N N 121 G "C5'" "H5''" sing N N 122 G "C4'" "O4'" sing N N 123 G "C4'" "C3'" sing N N 124 G "C4'" "H4'" sing N N 125 G "O4'" "C1'" sing N N 126 G "C3'" "O3'" sing N N 127 G "C3'" "C2'" sing N N 128 G "C3'" "H3'" sing N N 129 G "O3'" "HO3'" sing N N 130 G "C2'" "O2'" sing N N 131 G "C2'" "C1'" sing N N 132 G "C2'" "H2'" sing N N 133 G "O2'" "HO2'" sing N N 134 G "C1'" N9 sing N N 135 G "C1'" "H1'" sing N N 136 G N9 C8 sing Y N 137 G N9 C4 sing Y N 138 G C8 N7 doub Y N 139 G C8 H8 sing N N 140 G N7 C5 sing Y N 141 G C5 C6 sing N N 142 G C5 C4 doub Y N 143 G C6 O6 doub N N 144 G C6 N1 sing N N 145 G N1 C2 sing N N 146 G N1 H1 sing N N 147 G C2 N2 sing N N 148 G C2 N3 doub N N 149 G N2 H21 sing N N 150 G N2 H22 sing N N 151 G N3 C4 sing N N 152 HOH O H1 sing N N 153 HOH O H2 sing N N 154 U OP3 P sing N N 155 U OP3 HOP3 sing N N 156 U P OP1 doub N N 157 U P OP2 sing N N 158 U P "O5'" sing N N 159 U OP2 HOP2 sing N N 160 U "O5'" "C5'" sing N N 161 U "C5'" "C4'" sing N N 162 U "C5'" "H5'" sing N N 163 U "C5'" "H5''" sing N N 164 U "C4'" "O4'" sing N N 165 U "C4'" "C3'" sing N N 166 U "C4'" "H4'" sing N N 167 U "O4'" "C1'" sing N N 168 U "C3'" "O3'" sing N N 169 U "C3'" "C2'" sing N N 170 U "C3'" "H3'" sing N N 171 U "O3'" "HO3'" sing N N 172 U "C2'" "O2'" sing N N 173 U "C2'" "C1'" sing N N 174 U "C2'" "H2'" sing N N 175 U "O2'" "HO2'" sing N N 176 U "C1'" N1 sing N N 177 U "C1'" "H1'" sing N N 178 U N1 C2 sing N N 179 U N1 C6 sing N N 180 U C2 O2 doub N N 181 U C2 N3 sing N N 182 U N3 C4 sing N N 183 U N3 H3 sing N N 184 U C4 O4 doub N N 185 U C4 C5 sing N N 186 U C5 C6 doub N N 187 U C5 H5 sing N N 188 U C6 H6 sing N N 189 UFT OP3 P sing N N 190 UFT OP1 P doub N N 191 UFT P OP2 sing N N 192 UFT P "O5'" sing N N 193 UFT OP3 HOP3 sing N N 194 UFT OP2 HOP2 sing N N 195 UFT "O5'" "C5'" sing N N 196 UFT C6 N1 sing N N 197 UFT N1 C2 sing N N 198 UFT N1 "C1'" sing N N 199 UFT C5 C6 doub N N 200 UFT C6 H6 sing N N 201 UFT N3 C2 sing N N 202 UFT C2 O2 doub N N 203 UFT C4 N3 sing N N 204 UFT O4 C4 doub N N 205 UFT C5 C4 sing N N 206 UFT C5 H5 sing N N 207 UFT "C2'" "F2'" sing N N 208 UFT "C3'" "C2'" sing N N 209 UFT "C2'" "C1'" sing N N 210 UFT "C2'" "H2'" sing N N 211 UFT "C5'" "C4'" sing N N 212 UFT "C5'" "H5'" sing N N 213 UFT "C5'" "H5'A" sing N N 214 UFT "C3'" "C4'" sing N N 215 UFT "C4'" "O4'" sing N N 216 UFT "C4'" "H4'" sing N N 217 UFT "O4'" "C1'" sing N N 218 UFT "C1'" "H1'" sing N N 219 UFT "C3'" "O3'" sing N N 220 UFT "C3'" "H3'" sing N N 221 UFT "O3'" "HO3'" sing N N 222 UFT N3 HN3 sing N N 223 # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 4 1_555 B UFT 5 1_555 0.074 -0.121 0.186 8.874 -12.057 1.460 1 A_A104:UFT205_B A 104 ? B 205 ? 20 1 1 A UFT 5 1_555 B A 4 1_555 0.093 -0.065 -0.031 3.646 -13.654 5.585 2 A_UFT105:A204_B A 105 ? B 204 ? 20 1 1 C A 4 1_555 D UFT 5 1_555 -0.069 -0.061 -0.006 -4.539 -13.946 6.457 3 C_A304:UFT405_D C 304 ? D 405 ? 20 1 1 C UFT 5 1_555 D A 4 1_555 -0.067 -0.124 0.174 -8.047 -11.769 1.096 4 C_UFT305:A404_D C 305 ? D 404 ? 20 1 1 E A 4 1_555 F UFT 5 1_555 0.082 -0.150 0.303 2.456 -10.061 3.732 5 E_A504:UFT605_F E 504 ? F 605 ? 20 1 1 E UFT 5 1_555 F A 4 1_555 0.028 -0.191 0.330 -4.128 -10.841 2.025 6 E_UFT505:A604_F E 505 ? F 604 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 4 1_555 B UFT 5 1_555 A UFT 5 1_555 B A 4 1_555 0.746 -1.535 3.348 2.721 14.867 31.284 -4.711 -0.862 2.445 25.770 -4.716 34.661 1 AA_A104UFT105:A204UFT205_BB A 104 ? B 205 ? A 105 ? B 204 ? 1 C A 4 1_555 D UFT 5 1_555 C UFT 5 1_555 D A 4 1_555 -0.802 -1.529 3.304 -2.641 14.766 31.286 -4.667 0.973 2.419 25.617 4.582 34.615 2 CC_A304UFT305:A404UFT405_DD C 304 ? D 405 ? C 305 ? D 404 ? 1 E A 4 1_555 F UFT 5 1_555 E UFT 5 1_555 F A 4 1_555 -0.077 -1.761 3.617 -0.470 15.374 30.004 -5.516 0.057 2.451 27.537 0.842 33.636 3 EE_A504UFT505:A604UFT605_FF E 504 ? F 605 ? E 505 ? F 604 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BARIUM ION' BA 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3P4A _pdbx_initial_refinement_model.details 'PDB ENTRY 3P4A' #