HEADER HYDROLASE 15-OCT-10 3P96 TITLE CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE SERB FROM MYCOBACTERIUM TITLE 2 AVIUM, NATIVE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOSERINE PHOSPHATASE SERB; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.3.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM AVIUM; SOURCE 3 ORGANISM_TAXID: 243243; SOURCE 4 STRAIN: 104; SOURCE 5 GENE: SERB, MAV_3907; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, PHOSPHOSERINE PHOSPHATASE SERB, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 21-FEB-24 3P96 1 REMARK SEQADV LINK REVDAT 4 08-NOV-17 3P96 1 REMARK REVDAT 3 11-MAR-15 3P96 1 JRNL REMARK VERSN REVDAT 2 06-JUL-11 3P96 1 JRNL REVDAT 1 10-NOV-10 3P96 0 JRNL AUTH J.ABENDROTH,A.S.GARDBERG,J.I.ROBINSON,J.S.CHRISTENSEN, JRNL AUTH 2 B.L.STAKER,P.J.MYLER,L.J.STEWART,T.E.EDWARDS JRNL TITL SAD PHASING USING IODIDE IONS IN A HIGH-THROUGHPUT JRNL TITL 2 STRUCTURAL GENOMICS ENVIRONMENT. JRNL REF J.STRUCT.FUNCT.GENOM. V. 12 83 2011 JRNL REFN ISSN 1345-711X JRNL PMID 21359836 JRNL DOI 10.1007/S10969-011-9101-7 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, REMARK 1 AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, REMARK 1 AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, REMARK 1 AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, REMARK 1 AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, REMARK 1 AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, REMARK 1 AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER REMARK 1 TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG REMARK 1 TITL 2 TARGETS. REMARK 1 REF TUBERCULOSIS (EDINB) 2014 REMARK 1 REFN ESSN 1873-281X REMARK 1 PMID 25613812 REMARK 1 DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 29505 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1493 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1805 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.5580 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.5370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2890 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.27000 REMARK 3 B22 (A**2) : -0.53000 REMARK 3 B33 (A**2) : -2.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.195 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.181 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.038 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2937 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1914 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4004 ; 1.540 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4671 ; 0.948 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 397 ; 6.583 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;35.149 ;22.920 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 463 ;14.310 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;19.613 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 503 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3325 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 577 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1964 ; 0.722 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 812 ; 0.167 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3145 ; 1.301 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 973 ; 2.131 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 858 ; 3.385 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): 37.6940 65.5540 51.8010 REMARK 3 T TENSOR REMARK 3 T11: 0.4543 T22: 0.1157 REMARK 3 T33: 0.0773 T12: -0.1663 REMARK 3 T13: -0.0728 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.9444 L22: 4.0829 REMARK 3 L33: 3.9361 L12: 1.9907 REMARK 3 L13: 0.2052 L23: 0.2563 REMARK 3 S TENSOR REMARK 3 S11: -0.1383 S12: -0.1961 S13: 0.2362 REMARK 3 S21: 0.0874 S22: -0.0887 S23: 0.0625 REMARK 3 S31: -0.5597 S32: 0.2829 S33: 0.2270 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 81 REMARK 3 ORIGIN FOR THE GROUP (A): 41.8850 66.7650 59.1870 REMARK 3 T TENSOR REMARK 3 T11: 0.5592 T22: 0.2998 REMARK 3 T33: 0.1095 T12: -0.1882 REMARK 3 T13: -0.0975 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 2.2024 L22: 4.0324 REMARK 3 L33: 5.1753 L12: 1.0036 REMARK 3 L13: 2.0999 L23: 3.4851 REMARK 3 S TENSOR REMARK 3 S11: -0.1097 S12: -0.3217 S13: 0.2512 REMARK 3 S21: 0.4231 S22: 0.0289 S23: -0.1864 REMARK 3 S31: 0.0080 S32: 0.3458 S33: 0.0808 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 82 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 33.2330 44.9290 42.2960 REMARK 3 T TENSOR REMARK 3 T11: 0.3493 T22: 0.0667 REMARK 3 T33: 0.0761 T12: -0.1206 REMARK 3 T13: 0.0349 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 1.2909 L22: 2.4236 REMARK 3 L33: 3.9299 L12: 0.9082 REMARK 3 L13: 0.0289 L23: 0.4205 REMARK 3 S TENSOR REMARK 3 S11: -0.0230 S12: -0.0764 S13: -0.1707 REMARK 3 S21: -0.0134 S22: -0.0794 S23: -0.1948 REMARK 3 S31: 0.3916 S32: 0.0955 S33: 0.1023 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 142 A 194 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8170 38.5170 29.4100 REMARK 3 T TENSOR REMARK 3 T11: 0.4403 T22: 0.1134 REMARK 3 T33: 0.1461 T12: -0.1408 REMARK 3 T13: 0.0638 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 1.2379 L22: 0.6410 REMARK 3 L33: 4.2617 L12: 0.5116 REMARK 3 L13: 1.4506 L23: 1.0220 REMARK 3 S TENSOR REMARK 3 S11: -0.1030 S12: 0.2683 S13: -0.1875 REMARK 3 S21: -0.0221 S22: 0.1001 S23: -0.0573 REMARK 3 S31: 0.5691 S32: 0.2788 S33: 0.0029 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 195 A 278 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9840 32.7160 11.0540 REMARK 3 T TENSOR REMARK 3 T11: 0.5846 T22: 0.3246 REMARK 3 T33: 0.1834 T12: -0.2799 REMARK 3 T13: -0.0293 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 1.5632 L22: 3.2345 REMARK 3 L33: 4.2453 L12: 1.6686 REMARK 3 L13: 1.3632 L23: 3.1838 REMARK 3 S TENSOR REMARK 3 S11: 0.0382 S12: -0.0478 S13: 0.0045 REMARK 3 S21: 0.0535 S22: -0.2268 S23: 0.2288 REMARK 3 S31: 0.3853 S32: -0.4058 S33: 0.1887 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 279 A 289 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2770 41.6090 4.9240 REMARK 3 T TENSOR REMARK 3 T11: 0.7976 T22: 0.4338 REMARK 3 T33: 0.3671 T12: -0.1994 REMARK 3 T13: -0.1877 T23: -0.0937 REMARK 3 L TENSOR REMARK 3 L11: 6.6641 L22: 14.0146 REMARK 3 L33: 9.5081 L12: 7.1728 REMARK 3 L13: 6.8898 L23: 3.5450 REMARK 3 S TENSOR REMARK 3 S11: -0.9868 S12: 0.0060 S13: 0.9373 REMARK 3 S21: -0.8611 S22: 0.1768 S23: 1.2728 REMARK 3 S31: -1.1045 S32: -0.1499 S33: 0.8100 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 290 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8300 38.1520 15.2410 REMARK 3 T TENSOR REMARK 3 T11: 0.4721 T22: 0.2000 REMARK 3 T33: 0.1860 T12: -0.2115 REMARK 3 T13: -0.0159 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 0.7706 L22: 1.8441 REMARK 3 L33: 4.4918 L12: 0.8231 REMARK 3 L13: 0.7813 L23: 2.1813 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: 0.0756 S13: -0.0471 REMARK 3 S21: -0.0829 S22: 0.0923 S23: -0.0305 REMARK 3 S31: 0.2089 S32: -0.0384 S33: -0.1061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3P96 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062113. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29584 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 36.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.55400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M MES, 20% PEG6000, REMARK 280 PROTEIN AT 27.45MG/ML, PH 6.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.76500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.59500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.16000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.76500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.59500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.16000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.76500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.59500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.16000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.76500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.59500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.16000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 65.53000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 109.19000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 GLY A 401 REMARK 465 GLU A 402 REMARK 465 VAL A 403 REMARK 465 ARG A 404 REMARK 465 ARG A 405 REMARK 465 VAL A 406 REMARK 465 GLU A 407 REMARK 465 ILE A 408 REMARK 465 PRO A 409 REMARK 465 PRO A 410 REMARK 465 GLU A 411 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 GLU A 84 CG CD OE1 OE2 REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 227 CG CD OE1 NE2 REMARK 470 GLN A 250 CG CD OE1 NE2 REMARK 470 PRO A 284 CG CD REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 GLU A 368 CG CD OE1 OE2 REMARK 470 ASP A 400 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 46 18.22 59.78 REMARK 500 SER A 86 -77.39 -113.63 REMARK 500 ASP A 87 -48.18 64.85 REMARK 500 ARG A 105 74.26 -150.40 REMARK 500 THR A 191 -78.26 -114.33 REMARK 500 ASP A 316 -167.68 -111.40 REMARK 500 ASN A 361 68.59 36.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 412 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 187 OD2 REMARK 620 2 ASP A 189 O 89.2 REMARK 620 3 ASP A 343 OD1 85.8 88.4 REMARK 620 4 HOH A 429 O 88.6 177.1 89.4 REMARK 620 5 HOH A 440 O 88.7 91.2 174.5 90.8 REMARK 620 6 HOH A 451 O 171.0 98.5 89.7 83.5 95.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYAVA.01155.A RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE UNIPROT SEQUENCE #A0QJI1 IS BEING UPDATED DBREF 3P96 A 1 411 UNP A0QJI1 A0QJI1_MYCA1 1 411 SEQADV 3P96 GLY A -3 UNP A0QJI1 EXPRESSION TAG SEQADV 3P96 PRO A -2 UNP A0QJI1 EXPRESSION TAG SEQADV 3P96 GLY A -1 UNP A0QJI1 EXPRESSION TAG SEQADV 3P96 SER A 0 UNP A0QJI1 EXPRESSION TAG SEQADV 3P96 ARG A 31 UNP A0QJI1 GLY 31 SEE REMARK 999 SEQADV 3P96 GLU A 152 UNP A0QJI1 GLY 152 SEE REMARK 999 SEQRES 1 A 415 GLY PRO GLY SER MET ASN SER PRO PRO LYS VAL SER VAL SEQRES 2 A 415 LEU ILE THR VAL THR GLY VAL ASP GLN PRO GLY VAL THR SEQRES 3 A 415 ALA THR LEU PHE GLU VAL LEU SER ARG HIS GLY VAL GLU SEQRES 4 A 415 LEU LEU ASN VAL GLU GLN VAL VAL ILE ARG HIS ARG LEU SEQRES 5 A 415 THR LEU GLY VAL LEU VAL CYS CYS PRO ALA ASP VAL ALA SEQRES 6 A 415 ASP GLY PRO ALA LEU ARG HIS ASP VAL GLU ALA ALA ILE SEQRES 7 A 415 ARG LYS VAL GLY LEU ASP VAL SER ILE GLU ARG SER ASP SEQRES 8 A 415 ASP VAL PRO ILE ILE ARG GLU PRO SER THR HIS THR ILE SEQRES 9 A 415 PHE VAL LEU GLY ARG PRO ILE THR ALA ALA ALA PHE GLY SEQRES 10 A 415 ALA VAL ALA ARG GLU VAL ALA ALA LEU GLY VAL ASN ILE SEQRES 11 A 415 ASP LEU ILE ARG GLY VAL SER ASP TYR PRO VAL ILE GLY SEQRES 12 A 415 LEU GLU LEU ARG VAL SER VAL PRO PRO GLY ALA ASP GLU SEQRES 13 A 415 ALA LEU ARG THR ALA LEU ASN ARG VAL SER SER GLU GLU SEQRES 14 A 415 HIS VAL ASP VAL ALA VAL GLU ASP TYR THR LEU GLU ARG SEQRES 15 A 415 ARG ALA LYS ARG LEU ILE VAL PHE ASP VAL ASP SER THR SEQRES 16 A 415 LEU VAL GLN GLY GLU VAL ILE GLU MET LEU ALA ALA LYS SEQRES 17 A 415 ALA GLY ALA GLU GLY GLN VAL ALA ALA ILE THR ASP ALA SEQRES 18 A 415 ALA MET ARG GLY GLU LEU ASP PHE ALA GLN SER LEU GLN SEQRES 19 A 415 GLN ARG VAL ALA THR LEU ALA GLY LEU PRO ALA THR VAL SEQRES 20 A 415 ILE ASP GLU VAL ALA GLY GLN LEU GLU LEU MET PRO GLY SEQRES 21 A 415 ALA ARG THR THR LEU ARG THR LEU ARG ARG LEU GLY TYR SEQRES 22 A 415 ALA CYS GLY VAL VAL SER GLY GLY PHE ARG ARG ILE ILE SEQRES 23 A 415 GLU PRO LEU ALA GLU GLU LEU MET LEU ASP TYR VAL ALA SEQRES 24 A 415 ALA ASN GLU LEU GLU ILE VAL ASP GLY THR LEU THR GLY SEQRES 25 A 415 ARG VAL VAL GLY PRO ILE ILE ASP ARG ALA GLY LYS ALA SEQRES 26 A 415 THR ALA LEU ARG GLU PHE ALA GLN ARG ALA GLY VAL PRO SEQRES 27 A 415 MET ALA GLN THR VAL ALA VAL GLY ASP GLY ALA ASN ASP SEQRES 28 A 415 ILE ASP MET LEU ALA ALA ALA GLY LEU GLY ILE ALA PHE SEQRES 29 A 415 ASN ALA LYS PRO ALA LEU ARG GLU VAL ALA ASP ALA SER SEQRES 30 A 415 LEU SER HIS PRO TYR LEU ASP THR VAL LEU PHE LEU LEU SEQRES 31 A 415 GLY VAL THR ARG GLY GLU ILE GLU ALA ALA ASP ALA ILE SEQRES 32 A 415 ASP GLY GLU VAL ARG ARG VAL GLU ILE PRO PRO GLU HET MG A 412 1 HET CL A 413 1 HET EDO A 414 4 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG MG 2+ FORMUL 3 CL CL 1- FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *112(H2 O) HELIX 1 1 GLY A 20 SER A 30 1 11 HELIX 2 2 PRO A 57 ASP A 62 1 6 HELIX 3 3 GLY A 63 VAL A 77 1 15 HELIX 4 4 THR A 108 LEU A 122 1 15 HELIX 5 5 ALA A 150 HIS A 166 1 17 HELIX 6 6 GLU A 196 ALA A 205 1 10 HELIX 7 7 ALA A 207 ARG A 220 1 14 HELIX 8 8 ASP A 224 THR A 235 1 12 HELIX 9 9 ALA A 241 LEU A 251 1 11 HELIX 10 10 GLY A 256 LEU A 267 1 12 HELIX 11 11 ARG A 279 LEU A 289 1 11 HELIX 12 12 ASP A 316 GLY A 332 1 17 HELIX 13 13 PRO A 334 ALA A 336 5 3 HELIX 14 14 GLY A 344 ASN A 346 5 3 HELIX 15 15 ASP A 347 ALA A 354 1 8 HELIX 16 16 LYS A 363 ALA A 370 1 8 HELIX 17 17 ASP A 380 LEU A 386 1 7 HELIX 18 18 THR A 389 ASP A 400 1 12 SHEET 1 A 4 GLU A 35 ILE A 44 0 SHEET 2 A 4 ARG A 47 CYS A 56 -1 O GLY A 51 N GLU A 40 SHEET 3 A 4 VAL A 7 VAL A 16 -1 N VAL A 13 O LEU A 50 SHEET 4 A 4 ASP A 80 ARG A 85 -1 O ASP A 80 N THR A 14 SHEET 1 B 4 ASN A 125 SER A 133 0 SHEET 2 B 4 ILE A 138 SER A 145 -1 O GLU A 141 N ARG A 130 SHEET 3 B 4 HIS A 98 GLY A 104 -1 N HIS A 98 O VAL A 144 SHEET 4 B 4 ASP A 168 ASP A 173 -1 O GLU A 172 N THR A 99 SHEET 1 C 6 TYR A 293 ASN A 297 0 SHEET 2 C 6 ALA A 270 PHE A 278 1 N GLY A 277 O ASN A 297 SHEET 3 C 6 LEU A 183 PHE A 186 1 N PHE A 186 O GLY A 272 SHEET 4 C 6 THR A 338 GLY A 342 1 O VAL A 339 N LEU A 183 SHEET 5 C 6 LEU A 356 PHE A 360 1 O ILE A 358 N ALA A 340 SHEET 6 C 6 ALA A 372 LEU A 374 1 O LEU A 374 N ALA A 359 SHEET 1 D 2 LEU A 299 VAL A 302 0 SHEET 2 D 2 THR A 305 VAL A 310 -1 O THR A 305 N VAL A 302 LINK OD2 ASP A 187 MG MG A 412 1555 1555 2.11 LINK O ASP A 189 MG MG A 412 1555 1555 2.12 LINK OD1 ASP A 343 MG MG A 412 1555 1555 2.15 LINK MG MG A 412 O HOH A 429 1555 1555 2.05 LINK MG MG A 412 O HOH A 440 1555 1555 2.20 LINK MG MG A 412 O HOH A 451 1555 1555 2.16 CISPEP 1 ARG A 105 PRO A 106 0 5.61 CISPEP 2 TYR A 135 PRO A 136 0 -6.21 CISPEP 3 GLY A 312 PRO A 313 0 6.76 SITE 1 AC1 6 ASP A 187 ASP A 189 ASP A 343 HOH A 429 SITE 2 AC1 6 HOH A 440 HOH A 451 SITE 1 AC2 6 ASP A 187 GLY A 276 LYS A 320 ASN A 346 SITE 2 AC2 6 HOH A 440 HOH A 461 SITE 1 AC3 4 ASP A 189 ARG A 232 GLY A 277 HOH A 502 CRYST1 65.530 109.190 134.320 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015260 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009158 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007445 0.00000