data_3PD4 # _entry.id 3PD4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3PD4 pdb_00003pd4 10.2210/pdb3pd4/pdb RCSB RCSB062231 ? ? WWPDB D_1000062231 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2hl2 . unspecified PDB 2hl0 . unspecified PDB 2hl1 . unspecified PDB 1y2q . unspecified PDB 3PD2 . unspecified PDB 3PD3 . unspecified PDB 3PD5 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3PD4 _pdbx_database_status.recvd_initial_deposition_date 2010-10-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hussain, T.' 1 'Kamarthapu, V.' 2 'Kruparani, S.P.' 3 'Sankaranarayanan, R.' 4 # _citation.id primary _citation.title 'Mechanistic insights into cognate substrate discrimination during proofreading in translation' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year 2010 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 1091-6490 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21098258 _citation.pdbx_database_id_DOI 10.1073/pnas.1014299107 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hussain, T.' 1 ? primary 'Kamarthapu, V.' 2 ? primary 'Kruparani, S.P.' 3 ? primary 'Deshmukh, M.V.' 4 ? primary 'Sankaranarayanan, R.' 5 ? # _cell.entry_id 3PD4 _cell.length_a 40.335 _cell.length_b 69.083 _cell.length_c 94.659 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3PD4 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Threonyl-tRNA synthetase' 16738.312 2 6.1.1.3 ? 'UNP RESIDUES 1-147' ? 2 non-polymer syn "3'-deoxy-3'-(glycylamino)adenosine" 323.308 2 ? ? ? ? 3 water nat water 18.015 125 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Threonine--tRNA ligase, ThrRS' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MRVLLIHSDYIEYEVKDKALKNPEPISEDMKRGRMEEVLVAFISVEKVDEKNPEEVSLKAIEEISKVAEQVKAENVFVYP FAHLSSELAKPSVAMDILNRVYQGLKERGFNVGKAPFGYYKAFKISCKGHPLAELSRTIVPEEARVE ; _entity_poly.pdbx_seq_one_letter_code_can ;MRVLLIHSDYIEYEVKDKALKNPEPISEDMKRGRMEEVLVAFISVEKVDEKNPEEVSLKAIEEISKVAEQVKAENVFVYP FAHLSSELAKPSVAMDILNRVYQGLKERGFNVGKAPFGYYKAFKISCKGHPLAELSRTIVPEEARVE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 VAL n 1 4 LEU n 1 5 LEU n 1 6 ILE n 1 7 HIS n 1 8 SER n 1 9 ASP n 1 10 TYR n 1 11 ILE n 1 12 GLU n 1 13 TYR n 1 14 GLU n 1 15 VAL n 1 16 LYS n 1 17 ASP n 1 18 LYS n 1 19 ALA n 1 20 LEU n 1 21 LYS n 1 22 ASN n 1 23 PRO n 1 24 GLU n 1 25 PRO n 1 26 ILE n 1 27 SER n 1 28 GLU n 1 29 ASP n 1 30 MET n 1 31 LYS n 1 32 ARG n 1 33 GLY n 1 34 ARG n 1 35 MET n 1 36 GLU n 1 37 GLU n 1 38 VAL n 1 39 LEU n 1 40 VAL n 1 41 ALA n 1 42 PHE n 1 43 ILE n 1 44 SER n 1 45 VAL n 1 46 GLU n 1 47 LYS n 1 48 VAL n 1 49 ASP n 1 50 GLU n 1 51 LYS n 1 52 ASN n 1 53 PRO n 1 54 GLU n 1 55 GLU n 1 56 VAL n 1 57 SER n 1 58 LEU n 1 59 LYS n 1 60 ALA n 1 61 ILE n 1 62 GLU n 1 63 GLU n 1 64 ILE n 1 65 SER n 1 66 LYS n 1 67 VAL n 1 68 ALA n 1 69 GLU n 1 70 GLN n 1 71 VAL n 1 72 LYS n 1 73 ALA n 1 74 GLU n 1 75 ASN n 1 76 VAL n 1 77 PHE n 1 78 VAL n 1 79 TYR n 1 80 PRO n 1 81 PHE n 1 82 ALA n 1 83 HIS n 1 84 LEU n 1 85 SER n 1 86 SER n 1 87 GLU n 1 88 LEU n 1 89 ALA n 1 90 LYS n 1 91 PRO n 1 92 SER n 1 93 VAL n 1 94 ALA n 1 95 MET n 1 96 ASP n 1 97 ILE n 1 98 LEU n 1 99 ASN n 1 100 ARG n 1 101 VAL n 1 102 TYR n 1 103 GLN n 1 104 GLY n 1 105 LEU n 1 106 LYS n 1 107 GLU n 1 108 ARG n 1 109 GLY n 1 110 PHE n 1 111 ASN n 1 112 VAL n 1 113 GLY n 1 114 LYS n 1 115 ALA n 1 116 PRO n 1 117 PHE n 1 118 GLY n 1 119 TYR n 1 120 TYR n 1 121 LYS n 1 122 ALA n 1 123 PHE n 1 124 LYS n 1 125 ILE n 1 126 SER n 1 127 CYS n 1 128 LYS n 1 129 GLY n 1 130 HIS n 1 131 PRO n 1 132 LEU n 1 133 ALA n 1 134 GLU n 1 135 LEU n 1 136 SER n 1 137 ARG n 1 138 THR n 1 139 ILE n 1 140 VAL n 1 141 PRO n 1 142 GLU n 1 143 GLU n 1 144 ALA n 1 145 ARG n 1 146 VAL n 1 147 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PAB1490, PYRAB13430, thrS' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus abyssi' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 29292 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SYT_PYRAB _struct_ref.pdbx_db_accession Q9UZ14 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MRVLLIHSDYIEYEVKDKALKNPEPISEDMKRGRMEEVLVAFISVEKVDEKNPEEVSLKAIEEISKVAEQVKAENVFVYP FAHLSSELAKPSVAMDILNRVYQGLKERGFNVGKAPFGYYKAFKISCKGHPLAELSRTIVPEEARVE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3PD4 A 1 ? 147 ? Q9UZ14 1 ? 147 ? 1 147 2 1 3PD4 B 1 ? 147 ? Q9UZ14 1 ? 147 ? 1 147 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A3G non-polymer . "3'-deoxy-3'-(glycylamino)adenosine" ? 'C12 H17 N7 O4' 323.308 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3PD4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_percent_sol 37.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PEG 3350, Bis-Tris, NaCl, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2009-05-17 _diffrn_detector.details 'Osmic mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Ni FILTER' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3PD4 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 25.0 _reflns.d_resolution_high 2.4 _reflns.number_obs 10812 _reflns.number_all 10812 _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.109 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 87.6 _reflns_shell.Rmerge_I_obs 0.291 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.5 _reflns_shell.pdbx_redundancy 3.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3PD4 _refine.ls_number_reflns_obs 10254 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.85 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 99.49 _refine.ls_R_factor_obs 0.20760 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20368 _refine.ls_R_factor_R_free 0.28924 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 521 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.873 _refine.B_iso_mean 32.397 _refine.aniso_B[1][1] 0.96 _refine.aniso_B[2][2] 2.65 _refine.aniso_B[3][3] -3.61 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1Y2Q' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 1.168 _refine.pdbx_overall_ESU_R_Free 0.346 _refine.overall_SU_ML 0.232 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 9.683 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 3PD4 _refine_analyze.Luzzati_coordinate_error_obs 0.31 _refine_analyze.Luzzati_sigma_a_obs 0.34 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.43 _refine_analyze.Luzzati_sigma_a_free 0.39 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2279 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 125 _refine_hist.number_atoms_total 2450 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 24.85 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 2375 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.594 2.010 ? 3209 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.675 5.000 ? 287 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.001 24.510 ? 102 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.713 15.000 ? 429 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.289 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.099 0.200 ? 357 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1769 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.215 0.200 ? 1093 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.303 0.200 ? 1606 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.179 0.200 ? 120 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.237 0.200 ? 33 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.157 0.200 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.714 1.500 ? 1495 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.207 2.000 ? 2351 'X-RAY DIFFRACTION' ? r_scbond_it 2.074 3.000 ? 990 'X-RAY DIFFRACTION' ? r_scangle_it 3.465 4.500 ? 858 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.402 _refine_ls_shell.d_res_low 2.465 _refine_ls_shell.number_reflns_R_work 694 _refine_ls_shell.R_factor_R_work 0.252 _refine_ls_shell.percent_reflns_obs 95.83 _refine_ls_shell.R_factor_R_free 0.401 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 41 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 a3g.param a3g.top # _struct.entry_id 3PD4 _struct.title ;Crystal structure of the editing domain of threonyl-tRNA synthetase from Pyrococcus abyssi in complex with glycyl-3'-aminoadenosine ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PD4 _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text 'alpha/beta fold, deacylase, editing, aminoacyl-tRNA synthetase, translation, LIGASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 27 ? MET A 30 ? SER A 27 MET A 30 5 ? 4 HELX_P HELX_P2 2 GLU A 46 ? LYS A 51 ? GLU A 46 LYS A 51 5 ? 6 HELX_P HELX_P3 3 ASN A 52 ? VAL A 71 ? ASN A 52 VAL A 71 1 ? 20 HELX_P HELX_P4 4 ALA A 82 ? SER A 85 ? ALA A 82 SER A 85 5 ? 4 HELX_P HELX_P5 5 LYS A 90 ? GLU A 107 ? LYS A 90 GLU A 107 1 ? 18 HELX_P HELX_P6 6 GLU B 28 ? MET B 30 ? GLU B 28 MET B 30 5 ? 3 HELX_P HELX_P7 7 GLU B 46 ? LYS B 51 ? GLU B 46 LYS B 51 5 ? 6 HELX_P HELX_P8 8 ASN B 52 ? LYS B 72 ? ASN B 52 LYS B 72 1 ? 21 HELX_P HELX_P9 9 ALA B 82 ? SER B 85 ? ALA B 82 SER B 85 5 ? 4 HELX_P HELX_P10 10 LYS B 90 ? GLY B 109 ? LYS B 90 GLY B 109 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 10 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? parallel A 9 10 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASN A 111 ? LYS A 114 ? ASN A 111 LYS A 114 A 2 ASN A 75 ? PRO A 80 ? ASN A 75 PRO A 80 A 3 ARG A 32 ? SER A 44 ? ARG A 32 SER A 44 A 4 ARG A 2 ? LYS A 18 ? ARG A 2 LYS A 18 A 5 TYR A 119 ? CYS A 127 ? TYR A 119 CYS A 127 A 6 TYR B 119 ? CYS B 127 ? TYR B 119 CYS B 127 A 7 ARG B 2 ? LYS B 18 ? ARG B 2 LYS B 18 A 8 ARG B 32 ? SER B 44 ? ARG B 32 SER B 44 A 9 ASN B 75 ? PRO B 80 ? ASN B 75 PRO B 80 A 10 ASN B 111 ? LYS B 114 ? ASN B 111 LYS B 114 B 1 GLU A 134 ? THR A 138 ? GLU A 134 THR A 138 B 2 ARG A 2 ? LYS A 18 ? ARG A 2 LYS A 18 B 3 TYR A 119 ? CYS A 127 ? TYR A 119 CYS A 127 B 4 TYR B 119 ? CYS B 127 ? TYR B 119 CYS B 127 B 5 ARG B 2 ? LYS B 18 ? ARG B 2 LYS B 18 B 6 GLU B 134 ? THR B 138 ? GLU B 134 THR B 138 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 113 ? O GLY A 113 N VAL A 78 ? N VAL A 78 A 2 3 O ASN A 75 ? O ASN A 75 N LEU A 39 ? N LEU A 39 A 3 4 O VAL A 40 ? O VAL A 40 N ILE A 6 ? N ILE A 6 A 4 5 N LYS A 16 ? N LYS A 16 O TYR A 120 ? O TYR A 120 A 5 6 N PHE A 123 ? N PHE A 123 O CYS B 127 ? O CYS B 127 A 6 7 O LYS B 124 ? O LYS B 124 N GLU B 12 ? N GLU B 12 A 7 8 N LEU B 4 ? N LEU B 4 O PHE B 42 ? O PHE B 42 A 8 9 N ALA B 41 ? N ALA B 41 O TYR B 79 ? O TYR B 79 A 9 10 N VAL B 78 ? N VAL B 78 O GLY B 113 ? O GLY B 113 B 1 2 O LEU A 135 ? O LEU A 135 N LEU A 5 ? N LEU A 5 B 2 3 N LYS A 16 ? N LYS A 16 O TYR A 120 ? O TYR A 120 B 3 4 N PHE A 123 ? N PHE A 123 O CYS B 127 ? O CYS B 127 B 4 5 O LYS B 124 ? O LYS B 124 N GLU B 12 ? N GLU B 12 B 5 6 N LEU B 5 ? N LEU B 5 O LEU B 135 ? O LEU B 135 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A A3G 500 ? 16 'BINDING SITE FOR RESIDUE A3G A 500' AC2 Software B A3G 501 ? 12 'BINDING SITE FOR RESIDUE A3G B 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 ALA A 19 ? ALA A 19 . ? 1_555 ? 2 AC1 16 ILE A 43 ? ILE A 43 . ? 1_555 ? 3 AC1 16 VAL A 45 ? VAL A 45 . ? 1_555 ? 4 AC1 16 PRO A 80 ? PRO A 80 . ? 1_555 ? 5 AC1 16 PHE A 81 ? PHE A 81 . ? 1_555 ? 6 AC1 16 ALA A 82 ? ALA A 82 . ? 1_555 ? 7 AC1 16 LEU A 88 ? LEU A 88 . ? 1_555 ? 8 AC1 16 ALA A 89 ? ALA A 89 . ? 1_555 ? 9 AC1 16 ALA A 94 ? ALA A 94 . ? 1_555 ? 10 AC1 16 PHE A 117 ? PHE A 117 . ? 1_555 ? 11 AC1 16 GLY A 118 ? GLY A 118 . ? 1_555 ? 12 AC1 16 TYR A 119 ? TYR A 119 . ? 1_555 ? 13 AC1 16 LYS A 121 ? LYS A 121 . ? 1_555 ? 14 AC1 16 HOH E . ? HOH A 1002 . ? 1_555 ? 15 AC1 16 HOH E . ? HOH A 1085 . ? 1_555 ? 16 AC1 16 GLU B 134 ? GLU B 134 . ? 1_555 ? 17 AC2 12 GLU A 134 ? GLU A 134 . ? 1_555 ? 18 AC2 12 ALA B 19 ? ALA B 19 . ? 1_555 ? 19 AC2 12 ILE B 43 ? ILE B 43 . ? 1_555 ? 20 AC2 12 VAL B 45 ? VAL B 45 . ? 1_555 ? 21 AC2 12 PHE B 81 ? PHE B 81 . ? 1_555 ? 22 AC2 12 ALA B 82 ? ALA B 82 . ? 1_555 ? 23 AC2 12 ALA B 89 ? ALA B 89 . ? 1_555 ? 24 AC2 12 PHE B 117 ? PHE B 117 . ? 1_555 ? 25 AC2 12 GLY B 118 ? GLY B 118 . ? 1_555 ? 26 AC2 12 TYR B 119 ? TYR B 119 . ? 1_555 ? 27 AC2 12 HOH F . ? HOH B 1005 . ? 1_555 ? 28 AC2 12 HOH F . ? HOH B 1037 . ? 1_555 ? # _database_PDB_matrix.entry_id 3PD4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3PD4 _atom_sites.fract_transf_matrix[1][1] 0.024792 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014475 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010564 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 HIS 7 7 7 HIS HIS A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 LYS 18 18 18 LYS ALA A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 MET 30 30 30 MET MET A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 MET 35 35 35 MET MET A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 LYS 51 51 51 LYS ALA A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 GLU 74 74 74 GLU ALA A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 PHE 81 81 81 PHE PHE A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 HIS 83 83 83 HIS HIS A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 MET 95 95 95 MET MET A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 TYR 102 102 102 TYR TYR A . n A 1 103 GLN 103 103 103 GLN GLN A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 PHE 110 110 110 PHE PHE A . n A 1 111 ASN 111 111 111 ASN ASN A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 PRO 116 116 116 PRO PRO A . n A 1 117 PHE 117 117 117 PHE PHE A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 TYR 119 119 119 TYR TYR A . n A 1 120 TYR 120 120 120 TYR TYR A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 PHE 123 123 123 PHE PHE A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 ILE 125 125 125 ILE ILE A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 CYS 127 127 127 CYS CYS A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 HIS 130 130 130 HIS HIS A . n A 1 131 PRO 131 131 131 PRO PRO A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 ALA 133 133 133 ALA ALA A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 SER 136 136 136 SER SER A . n A 1 137 ARG 137 137 137 ARG ARG A . n A 1 138 THR 138 138 138 THR THR A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 PRO 141 141 141 PRO PRO A . n A 1 142 GLU 142 142 142 GLU ALA A . n A 1 143 GLU 143 143 143 GLU ALA A . n A 1 144 ALA 144 144 144 ALA ALA A . n A 1 145 ARG 145 145 145 ARG ARG A . n A 1 146 VAL 146 146 146 VAL ALA A . n A 1 147 GLU 147 147 ? ? ? A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 ARG 2 2 2 ARG ARG B . n B 1 3 VAL 3 3 3 VAL VAL B . n B 1 4 LEU 4 4 4 LEU LEU B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 ILE 6 6 6 ILE ILE B . n B 1 7 HIS 7 7 7 HIS HIS B . n B 1 8 SER 8 8 8 SER SER B . n B 1 9 ASP 9 9 9 ASP ASP B . n B 1 10 TYR 10 10 10 TYR TYR B . n B 1 11 ILE 11 11 11 ILE ILE B . n B 1 12 GLU 12 12 12 GLU GLU B . n B 1 13 TYR 13 13 13 TYR TYR B . n B 1 14 GLU 14 14 14 GLU GLU B . n B 1 15 VAL 15 15 15 VAL VAL B . n B 1 16 LYS 16 16 16 LYS LYS B . n B 1 17 ASP 17 17 17 ASP ASP B . n B 1 18 LYS 18 18 18 LYS LYS B . n B 1 19 ALA 19 19 19 ALA ALA B . n B 1 20 LEU 20 20 20 LEU LEU B . n B 1 21 LYS 21 21 21 LYS ALA B . n B 1 22 ASN 22 22 22 ASN ASN B . n B 1 23 PRO 23 23 23 PRO PRO B . n B 1 24 GLU 24 24 24 GLU GLU B . n B 1 25 PRO 25 25 25 PRO PRO B . n B 1 26 ILE 26 26 26 ILE ILE B . n B 1 27 SER 27 27 27 SER SER B . n B 1 28 GLU 28 28 28 GLU GLU B . n B 1 29 ASP 29 29 29 ASP ASP B . n B 1 30 MET 30 30 30 MET MET B . n B 1 31 LYS 31 31 31 LYS LYS B . n B 1 32 ARG 32 32 32 ARG ARG B . n B 1 33 GLY 33 33 33 GLY GLY B . n B 1 34 ARG 34 34 34 ARG ARG B . n B 1 35 MET 35 35 35 MET MET B . n B 1 36 GLU 36 36 36 GLU GLU B . n B 1 37 GLU 37 37 37 GLU GLU B . n B 1 38 VAL 38 38 38 VAL VAL B . n B 1 39 LEU 39 39 39 LEU LEU B . n B 1 40 VAL 40 40 40 VAL VAL B . n B 1 41 ALA 41 41 41 ALA ALA B . n B 1 42 PHE 42 42 42 PHE PHE B . n B 1 43 ILE 43 43 43 ILE ILE B . n B 1 44 SER 44 44 44 SER SER B . n B 1 45 VAL 45 45 45 VAL VAL B . n B 1 46 GLU 46 46 46 GLU GLU B . n B 1 47 LYS 47 47 47 LYS LYS B . n B 1 48 VAL 48 48 48 VAL VAL B . n B 1 49 ASP 49 49 49 ASP ASP B . n B 1 50 GLU 50 50 50 GLU GLU B . n B 1 51 LYS 51 51 51 LYS ALA B . n B 1 52 ASN 52 52 52 ASN ASN B . n B 1 53 PRO 53 53 53 PRO PRO B . n B 1 54 GLU 54 54 54 GLU GLU B . n B 1 55 GLU 55 55 55 GLU GLU B . n B 1 56 VAL 56 56 56 VAL VAL B . n B 1 57 SER 57 57 57 SER SER B . n B 1 58 LEU 58 58 58 LEU LEU B . n B 1 59 LYS 59 59 59 LYS LYS B . n B 1 60 ALA 60 60 60 ALA ALA B . n B 1 61 ILE 61 61 61 ILE ILE B . n B 1 62 GLU 62 62 62 GLU GLU B . n B 1 63 GLU 63 63 63 GLU GLU B . n B 1 64 ILE 64 64 64 ILE ILE B . n B 1 65 SER 65 65 65 SER SER B . n B 1 66 LYS 66 66 66 LYS LYS B . n B 1 67 VAL 67 67 67 VAL VAL B . n B 1 68 ALA 68 68 68 ALA ALA B . n B 1 69 GLU 69 69 69 GLU GLU B . n B 1 70 GLN 70 70 70 GLN GLN B . n B 1 71 VAL 71 71 71 VAL VAL B . n B 1 72 LYS 72 72 72 LYS LYS B . n B 1 73 ALA 73 73 73 ALA ALA B . n B 1 74 GLU 74 74 74 GLU GLU B . n B 1 75 ASN 75 75 75 ASN ASN B . n B 1 76 VAL 76 76 76 VAL VAL B . n B 1 77 PHE 77 77 77 PHE PHE B . n B 1 78 VAL 78 78 78 VAL VAL B . n B 1 79 TYR 79 79 79 TYR TYR B . n B 1 80 PRO 80 80 80 PRO PRO B . n B 1 81 PHE 81 81 81 PHE PHE B . n B 1 82 ALA 82 82 82 ALA ALA B . n B 1 83 HIS 83 83 83 HIS HIS B . n B 1 84 LEU 84 84 84 LEU LEU B . n B 1 85 SER 85 85 85 SER SER B . n B 1 86 SER 86 86 86 SER SER B . n B 1 87 GLU 87 87 87 GLU GLU B . n B 1 88 LEU 88 88 88 LEU LEU B . n B 1 89 ALA 89 89 89 ALA ALA B . n B 1 90 LYS 90 90 90 LYS LYS B . n B 1 91 PRO 91 91 91 PRO PRO B . n B 1 92 SER 92 92 92 SER SER B . n B 1 93 VAL 93 93 93 VAL VAL B . n B 1 94 ALA 94 94 94 ALA ALA B . n B 1 95 MET 95 95 95 MET MET B . n B 1 96 ASP 96 96 96 ASP ASP B . n B 1 97 ILE 97 97 97 ILE ILE B . n B 1 98 LEU 98 98 98 LEU LEU B . n B 1 99 ASN 99 99 99 ASN ASN B . n B 1 100 ARG 100 100 100 ARG ARG B . n B 1 101 VAL 101 101 101 VAL VAL B . n B 1 102 TYR 102 102 102 TYR TYR B . n B 1 103 GLN 103 103 103 GLN GLN B . n B 1 104 GLY 104 104 104 GLY GLY B . n B 1 105 LEU 105 105 105 LEU LEU B . n B 1 106 LYS 106 106 106 LYS LYS B . n B 1 107 GLU 107 107 107 GLU GLU B . n B 1 108 ARG 108 108 108 ARG ARG B . n B 1 109 GLY 109 109 109 GLY GLY B . n B 1 110 PHE 110 110 110 PHE PHE B . n B 1 111 ASN 111 111 111 ASN ASN B . n B 1 112 VAL 112 112 112 VAL VAL B . n B 1 113 GLY 113 113 113 GLY GLY B . n B 1 114 LYS 114 114 114 LYS LYS B . n B 1 115 ALA 115 115 115 ALA ALA B . n B 1 116 PRO 116 116 116 PRO PRO B . n B 1 117 PHE 117 117 117 PHE PHE B . n B 1 118 GLY 118 118 118 GLY GLY B . n B 1 119 TYR 119 119 119 TYR TYR B . n B 1 120 TYR 120 120 120 TYR TYR B . n B 1 121 LYS 121 121 121 LYS LYS B . n B 1 122 ALA 122 122 122 ALA ALA B . n B 1 123 PHE 123 123 123 PHE PHE B . n B 1 124 LYS 124 124 124 LYS LYS B . n B 1 125 ILE 125 125 125 ILE ILE B . n B 1 126 SER 126 126 126 SER SER B . n B 1 127 CYS 127 127 127 CYS CYS B . n B 1 128 LYS 128 128 128 LYS LYS B . n B 1 129 GLY 129 129 129 GLY GLY B . n B 1 130 HIS 130 130 130 HIS HIS B . n B 1 131 PRO 131 131 131 PRO PRO B . n B 1 132 LEU 132 132 132 LEU LEU B . n B 1 133 ALA 133 133 133 ALA ALA B . n B 1 134 GLU 134 134 134 GLU GLU B . n B 1 135 LEU 135 135 135 LEU LEU B . n B 1 136 SER 136 136 136 SER SER B . n B 1 137 ARG 137 137 137 ARG ARG B . n B 1 138 THR 138 138 138 THR THR B . n B 1 139 ILE 139 139 139 ILE ILE B . n B 1 140 VAL 140 140 140 VAL VAL B . n B 1 141 PRO 141 141 141 PRO PRO B . n B 1 142 GLU 142 142 142 GLU GLU B . n B 1 143 GLU 143 143 143 GLU GLU B . n B 1 144 ALA 144 144 ? ? ? B . n B 1 145 ARG 145 145 ? ? ? B . n B 1 146 VAL 146 146 ? ? ? B . n B 1 147 GLU 147 147 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A3G 1 500 500 A3G A3G A . D 2 A3G 1 501 501 A3G A3G B . E 3 HOH 1 1002 1002 HOH HOH A . E 3 HOH 2 1003 1003 HOH HOH A . E 3 HOH 3 1007 1007 HOH HOH A . E 3 HOH 4 1008 1008 HOH HOH A . E 3 HOH 5 1010 1010 HOH HOH A . E 3 HOH 6 1012 1012 HOH HOH A . E 3 HOH 7 1013 1013 HOH HOH A . E 3 HOH 8 1014 1014 HOH HOH A . E 3 HOH 9 1016 1016 HOH HOH A . E 3 HOH 10 1017 1017 HOH HOH A . E 3 HOH 11 1020 1020 HOH HOH A . E 3 HOH 12 1021 1021 HOH HOH A . E 3 HOH 13 1022 1022 HOH HOH A . E 3 HOH 14 1023 1023 HOH HOH A . E 3 HOH 15 1024 1024 HOH HOH A . E 3 HOH 16 1030 1030 HOH HOH A . E 3 HOH 17 1031 1031 HOH HOH A . E 3 HOH 18 1033 1033 HOH HOH A . E 3 HOH 19 1035 1035 HOH HOH A . E 3 HOH 20 1039 1039 HOH HOH A . E 3 HOH 21 1040 1040 HOH HOH A . E 3 HOH 22 1044 1044 HOH HOH A . E 3 HOH 23 1045 1045 HOH HOH A . E 3 HOH 24 1047 1047 HOH HOH A . E 3 HOH 25 1048 1048 HOH HOH A . E 3 HOH 26 1050 1050 HOH HOH A . E 3 HOH 27 1053 1053 HOH HOH A . E 3 HOH 28 1054 1054 HOH HOH A . E 3 HOH 29 1055 1055 HOH HOH A . E 3 HOH 30 1057 1057 HOH HOH A . E 3 HOH 31 1058 1058 HOH HOH A . E 3 HOH 32 1059 1059 HOH HOH A . E 3 HOH 33 1062 1062 HOH HOH A . E 3 HOH 34 1063 1063 HOH HOH A . E 3 HOH 35 1064 1064 HOH HOH A . E 3 HOH 36 1065 1065 HOH HOH A . E 3 HOH 37 1067 1067 HOH HOH A . E 3 HOH 38 1068 1068 HOH HOH A . E 3 HOH 39 1071 1071 HOH HOH A . E 3 HOH 40 1073 1073 HOH HOH A . E 3 HOH 41 1074 1074 HOH HOH A . E 3 HOH 42 1076 1076 HOH HOH A . E 3 HOH 43 1077 1077 HOH HOH A . E 3 HOH 44 1081 1081 HOH HOH A . E 3 HOH 45 1082 1082 HOH HOH A . E 3 HOH 46 1084 1084 HOH HOH A . E 3 HOH 47 1085 1085 HOH HOH A . E 3 HOH 48 1086 1086 HOH HOH A . E 3 HOH 49 1094 1094 HOH HOH A . E 3 HOH 50 1096 1096 HOH HOH A . E 3 HOH 51 1100 1100 HOH HOH A . E 3 HOH 52 1102 1102 HOH HOH A . E 3 HOH 53 1112 1112 HOH HOH A . E 3 HOH 54 1113 1113 HOH HOH A . E 3 HOH 55 1114 1114 HOH HOH A . E 3 HOH 56 1117 1117 HOH HOH A . E 3 HOH 57 1118 1118 HOH HOH A . E 3 HOH 58 1119 1119 HOH HOH A . E 3 HOH 59 1120 1120 HOH HOH A . E 3 HOH 60 1122 1122 HOH HOH A . E 3 HOH 61 1123 1123 HOH HOH A . F 3 HOH 1 1001 1001 HOH HOH B . F 3 HOH 2 1004 1004 HOH HOH B . F 3 HOH 3 1005 1005 HOH HOH B . F 3 HOH 4 1006 1006 HOH HOH B . F 3 HOH 5 1009 1009 HOH HOH B . F 3 HOH 6 1011 1011 HOH HOH B . F 3 HOH 7 1015 1015 HOH HOH B . F 3 HOH 8 1018 1018 HOH HOH B . F 3 HOH 9 1019 1019 HOH HOH B . F 3 HOH 10 1025 1025 HOH HOH B . F 3 HOH 11 1026 1026 HOH HOH B . F 3 HOH 12 1027 1027 HOH HOH B . F 3 HOH 13 1028 1028 HOH HOH B . F 3 HOH 14 1029 1029 HOH HOH B . F 3 HOH 15 1032 1032 HOH HOH B . F 3 HOH 16 1034 1034 HOH HOH B . F 3 HOH 17 1036 1036 HOH HOH B . F 3 HOH 18 1037 1037 HOH HOH B . F 3 HOH 19 1038 1038 HOH HOH B . F 3 HOH 20 1041 1041 HOH HOH B . F 3 HOH 21 1042 1042 HOH HOH B . F 3 HOH 22 1043 1043 HOH HOH B . F 3 HOH 23 1046 1046 HOH HOH B . F 3 HOH 24 1049 1049 HOH HOH B . F 3 HOH 25 1051 1051 HOH HOH B . F 3 HOH 26 1052 1052 HOH HOH B . F 3 HOH 27 1056 1056 HOH HOH B . F 3 HOH 28 1060 1060 HOH HOH B . F 3 HOH 29 1061 1061 HOH HOH B . F 3 HOH 30 1066 1066 HOH HOH B . F 3 HOH 31 1069 1069 HOH HOH B . F 3 HOH 32 1070 1070 HOH HOH B . F 3 HOH 33 1072 1072 HOH HOH B . F 3 HOH 34 1075 1075 HOH HOH B . F 3 HOH 35 1078 1078 HOH HOH B . F 3 HOH 36 1079 1079 HOH HOH B . F 3 HOH 37 1080 1080 HOH HOH B . F 3 HOH 38 1083 1083 HOH HOH B . F 3 HOH 39 1087 1087 HOH HOH B . F 3 HOH 40 1088 1088 HOH HOH B . F 3 HOH 41 1089 1089 HOH HOH B . F 3 HOH 42 1090 1090 HOH HOH B . F 3 HOH 43 1091 1091 HOH HOH B . F 3 HOH 44 1092 1092 HOH HOH B . F 3 HOH 45 1093 1093 HOH HOH B . F 3 HOH 46 1095 1095 HOH HOH B . F 3 HOH 47 1097 1097 HOH HOH B . F 3 HOH 48 1098 1098 HOH HOH B . F 3 HOH 49 1099 1099 HOH HOH B . F 3 HOH 50 1101 1101 HOH HOH B . F 3 HOH 51 1103 1103 HOH HOH B . F 3 HOH 52 1104 1104 HOH HOH B . F 3 HOH 53 1105 1105 HOH HOH B . F 3 HOH 54 1106 1106 HOH HOH B . F 3 HOH 55 1107 1107 HOH HOH B . F 3 HOH 56 1108 1108 HOH HOH B . F 3 HOH 57 1109 1109 HOH HOH B . F 3 HOH 58 1110 1110 HOH HOH B . F 3 HOH 59 1111 1111 HOH HOH B . F 3 HOH 60 1115 1115 HOH HOH B . F 3 HOH 61 1116 1116 HOH HOH B . F 3 HOH 62 1121 1121 HOH HOH B . F 3 HOH 63 1124 1124 HOH HOH B . F 3 HOH 64 1125 1125 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2180 ? 1 MORE -7 ? 1 'SSA (A^2)' 13200 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 MOLREP phasing . ? 2 CNS refinement 1.1 ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 REFMAC refinement 5.2.0019 ? 6 # _pdbx_entry_details.entry_id 3PD4 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;SEQUENCE OF THE PROTEIN USED IN THIS STUDY WAS THE FRAGMENT OF UNP RESIDUES 1-183 OF DATABASE Q9UZ14 (SYT_PYRAB). BUT THE C-TERMINAL PROBABLY HAVE BEEN CLEAVED BEFORE CRYSTALLIZING. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 88 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 88 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 88 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 132.25 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 16.95 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 16 ? ? -113.71 -119.06 2 1 ASN A 22 ? ? -108.38 53.25 3 1 ASN A 52 ? ? -157.45 77.61 4 1 ALA A 82 ? ? -55.21 -2.18 5 1 GLU A 87 ? ? -109.11 78.27 6 1 LYS B 16 ? ? -109.76 -132.88 7 1 ASN B 22 ? ? -110.79 77.49 8 1 ASN B 52 ? ? -150.01 81.83 9 1 GLU B 87 ? ? -113.91 67.71 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 18 ? CG ? A LYS 18 CG 2 1 Y 1 A LYS 18 ? CD ? A LYS 18 CD 3 1 Y 1 A LYS 18 ? CE ? A LYS 18 CE 4 1 Y 1 A LYS 18 ? NZ ? A LYS 18 NZ 5 1 Y 1 A LYS 51 ? CG ? A LYS 51 CG 6 1 Y 1 A LYS 51 ? CD ? A LYS 51 CD 7 1 Y 1 A LYS 51 ? CE ? A LYS 51 CE 8 1 Y 1 A LYS 51 ? NZ ? A LYS 51 NZ 9 1 Y 1 A GLU 74 ? CG ? A GLU 74 CG 10 1 Y 1 A GLU 74 ? CD ? A GLU 74 CD 11 1 Y 1 A GLU 74 ? OE1 ? A GLU 74 OE1 12 1 Y 1 A GLU 74 ? OE2 ? A GLU 74 OE2 13 1 Y 1 A GLU 142 ? CG ? A GLU 142 CG 14 1 Y 1 A GLU 142 ? CD ? A GLU 142 CD 15 1 Y 1 A GLU 142 ? OE1 ? A GLU 142 OE1 16 1 Y 1 A GLU 142 ? OE2 ? A GLU 142 OE2 17 1 Y 1 A GLU 143 ? CG ? A GLU 143 CG 18 1 Y 1 A GLU 143 ? CD ? A GLU 143 CD 19 1 Y 1 A GLU 143 ? OE1 ? A GLU 143 OE1 20 1 Y 1 A GLU 143 ? OE2 ? A GLU 143 OE2 21 1 Y 1 A VAL 146 ? CG1 ? A VAL 146 CG1 22 1 Y 1 A VAL 146 ? CG2 ? A VAL 146 CG2 23 1 Y 1 B LYS 21 ? CG ? B LYS 21 CG 24 1 Y 1 B LYS 21 ? CD ? B LYS 21 CD 25 1 Y 1 B LYS 21 ? CE ? B LYS 21 CE 26 1 Y 1 B LYS 21 ? NZ ? B LYS 21 NZ 27 1 Y 1 B LYS 51 ? CG ? B LYS 51 CG 28 1 Y 1 B LYS 51 ? CD ? B LYS 51 CD 29 1 Y 1 B LYS 51 ? CE ? B LYS 51 CE 30 1 Y 1 B LYS 51 ? NZ ? B LYS 51 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 147 ? A GLU 147 2 1 Y 1 B ALA 144 ? B ALA 144 3 1 Y 1 B ARG 145 ? B ARG 145 4 1 Y 1 B VAL 146 ? B VAL 146 5 1 Y 1 B GLU 147 ? B GLU 147 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A3G C C N N 1 A3G N N N N 2 A3G O O N N 3 A3G N1 N Y N 4 A3G C2 C Y N 5 A3G N3 N Y N 6 A3G C4 C Y N 7 A3G C5 C Y N 8 A3G C6 C Y N 9 A3G N6 N N N 10 A3G N7 N Y N 11 A3G C8 C Y N 12 A3G N8 N N N 13 A3G N9 N Y N 14 A3G CA C N N 15 A3G "C1'" C N R 16 A3G "C2'" C N R 17 A3G "O2'" O N N 18 A3G "C3'" C N S 19 A3G "C4'" C N S 20 A3G "O4'" O N N 21 A3G "C5'" C N N 22 A3G "O5'" O N N 23 A3G HN H N N 24 A3G HNA H N N 25 A3G H2 H N N 26 A3G HN6 H N N 27 A3G HN6A H N N 28 A3G H8 H N N 29 A3G HN8 H N N 30 A3G HA H N N 31 A3G HAA H N N 32 A3G "H1'" H N N 33 A3G "H2'" H N N 34 A3G "HO2'" H N N 35 A3G "H3'" H N N 36 A3G "H4'" H N N 37 A3G "H5'" H N N 38 A3G "H5'A" H N N 39 A3G "HO5'" H N N 40 ALA N N N N 41 ALA CA C N S 42 ALA C C N N 43 ALA O O N N 44 ALA CB C N N 45 ALA OXT O N N 46 ALA H H N N 47 ALA H2 H N N 48 ALA HA H N N 49 ALA HB1 H N N 50 ALA HB2 H N N 51 ALA HB3 H N N 52 ALA HXT H N N 53 ARG N N N N 54 ARG CA C N S 55 ARG C C N N 56 ARG O O N N 57 ARG CB C N N 58 ARG CG C N N 59 ARG CD C N N 60 ARG NE N N N 61 ARG CZ C N N 62 ARG NH1 N N N 63 ARG NH2 N N N 64 ARG OXT O N N 65 ARG H H N N 66 ARG H2 H N N 67 ARG HA H N N 68 ARG HB2 H N N 69 ARG HB3 H N N 70 ARG HG2 H N N 71 ARG HG3 H N N 72 ARG HD2 H N N 73 ARG HD3 H N N 74 ARG HE H N N 75 ARG HH11 H N N 76 ARG HH12 H N N 77 ARG HH21 H N N 78 ARG HH22 H N N 79 ARG HXT H N N 80 ASN N N N N 81 ASN CA C N S 82 ASN C C N N 83 ASN O O N N 84 ASN CB C N N 85 ASN CG C N N 86 ASN OD1 O N N 87 ASN ND2 N N N 88 ASN OXT O N N 89 ASN H H N N 90 ASN H2 H N N 91 ASN HA H N N 92 ASN HB2 H N N 93 ASN HB3 H N N 94 ASN HD21 H N N 95 ASN HD22 H N N 96 ASN HXT H N N 97 ASP N N N N 98 ASP CA C N S 99 ASP C C N N 100 ASP O O N N 101 ASP CB C N N 102 ASP CG C N N 103 ASP OD1 O N N 104 ASP OD2 O N N 105 ASP OXT O N N 106 ASP H H N N 107 ASP H2 H N N 108 ASP HA H N N 109 ASP HB2 H N N 110 ASP HB3 H N N 111 ASP HD2 H N N 112 ASP HXT H N N 113 CYS N N N N 114 CYS CA C N R 115 CYS C C N N 116 CYS O O N N 117 CYS CB C N N 118 CYS SG S N N 119 CYS OXT O N N 120 CYS H H N N 121 CYS H2 H N N 122 CYS HA H N N 123 CYS HB2 H N N 124 CYS HB3 H N N 125 CYS HG H N N 126 CYS HXT H N N 127 GLN N N N N 128 GLN CA C N S 129 GLN C C N N 130 GLN O O N N 131 GLN CB C N N 132 GLN CG C N N 133 GLN CD C N N 134 GLN OE1 O N N 135 GLN NE2 N N N 136 GLN OXT O N N 137 GLN H H N N 138 GLN H2 H N N 139 GLN HA H N N 140 GLN HB2 H N N 141 GLN HB3 H N N 142 GLN HG2 H N N 143 GLN HG3 H N N 144 GLN HE21 H N N 145 GLN HE22 H N N 146 GLN HXT H N N 147 GLU N N N N 148 GLU CA C N S 149 GLU C C N N 150 GLU O O N N 151 GLU CB C N N 152 GLU CG C N N 153 GLU CD C N N 154 GLU OE1 O N N 155 GLU OE2 O N N 156 GLU OXT O N N 157 GLU H H N N 158 GLU H2 H N N 159 GLU HA H N N 160 GLU HB2 H N N 161 GLU HB3 H N N 162 GLU HG2 H N N 163 GLU HG3 H N N 164 GLU HE2 H N N 165 GLU HXT H N N 166 GLY N N N N 167 GLY CA C N N 168 GLY C C N N 169 GLY O O N N 170 GLY OXT O N N 171 GLY H H N N 172 GLY H2 H N N 173 GLY HA2 H N N 174 GLY HA3 H N N 175 GLY HXT H N N 176 HIS N N N N 177 HIS CA C N S 178 HIS C C N N 179 HIS O O N N 180 HIS CB C N N 181 HIS CG C Y N 182 HIS ND1 N Y N 183 HIS CD2 C Y N 184 HIS CE1 C Y N 185 HIS NE2 N Y N 186 HIS OXT O N N 187 HIS H H N N 188 HIS H2 H N N 189 HIS HA H N N 190 HIS HB2 H N N 191 HIS HB3 H N N 192 HIS HD1 H N N 193 HIS HD2 H N N 194 HIS HE1 H N N 195 HIS HE2 H N N 196 HIS HXT H N N 197 HOH O O N N 198 HOH H1 H N N 199 HOH H2 H N N 200 ILE N N N N 201 ILE CA C N S 202 ILE C C N N 203 ILE O O N N 204 ILE CB C N S 205 ILE CG1 C N N 206 ILE CG2 C N N 207 ILE CD1 C N N 208 ILE OXT O N N 209 ILE H H N N 210 ILE H2 H N N 211 ILE HA H N N 212 ILE HB H N N 213 ILE HG12 H N N 214 ILE HG13 H N N 215 ILE HG21 H N N 216 ILE HG22 H N N 217 ILE HG23 H N N 218 ILE HD11 H N N 219 ILE HD12 H N N 220 ILE HD13 H N N 221 ILE HXT H N N 222 LEU N N N N 223 LEU CA C N S 224 LEU C C N N 225 LEU O O N N 226 LEU CB C N N 227 LEU CG C N N 228 LEU CD1 C N N 229 LEU CD2 C N N 230 LEU OXT O N N 231 LEU H H N N 232 LEU H2 H N N 233 LEU HA H N N 234 LEU HB2 H N N 235 LEU HB3 H N N 236 LEU HG H N N 237 LEU HD11 H N N 238 LEU HD12 H N N 239 LEU HD13 H N N 240 LEU HD21 H N N 241 LEU HD22 H N N 242 LEU HD23 H N N 243 LEU HXT H N N 244 LYS N N N N 245 LYS CA C N S 246 LYS C C N N 247 LYS O O N N 248 LYS CB C N N 249 LYS CG C N N 250 LYS CD C N N 251 LYS CE C N N 252 LYS NZ N N N 253 LYS OXT O N N 254 LYS H H N N 255 LYS H2 H N N 256 LYS HA H N N 257 LYS HB2 H N N 258 LYS HB3 H N N 259 LYS HG2 H N N 260 LYS HG3 H N N 261 LYS HD2 H N N 262 LYS HD3 H N N 263 LYS HE2 H N N 264 LYS HE3 H N N 265 LYS HZ1 H N N 266 LYS HZ2 H N N 267 LYS HZ3 H N N 268 LYS HXT H N N 269 MET N N N N 270 MET CA C N S 271 MET C C N N 272 MET O O N N 273 MET CB C N N 274 MET CG C N N 275 MET SD S N N 276 MET CE C N N 277 MET OXT O N N 278 MET H H N N 279 MET H2 H N N 280 MET HA H N N 281 MET HB2 H N N 282 MET HB3 H N N 283 MET HG2 H N N 284 MET HG3 H N N 285 MET HE1 H N N 286 MET HE2 H N N 287 MET HE3 H N N 288 MET HXT H N N 289 PHE N N N N 290 PHE CA C N S 291 PHE C C N N 292 PHE O O N N 293 PHE CB C N N 294 PHE CG C Y N 295 PHE CD1 C Y N 296 PHE CD2 C Y N 297 PHE CE1 C Y N 298 PHE CE2 C Y N 299 PHE CZ C Y N 300 PHE OXT O N N 301 PHE H H N N 302 PHE H2 H N N 303 PHE HA H N N 304 PHE HB2 H N N 305 PHE HB3 H N N 306 PHE HD1 H N N 307 PHE HD2 H N N 308 PHE HE1 H N N 309 PHE HE2 H N N 310 PHE HZ H N N 311 PHE HXT H N N 312 PRO N N N N 313 PRO CA C N S 314 PRO C C N N 315 PRO O O N N 316 PRO CB C N N 317 PRO CG C N N 318 PRO CD C N N 319 PRO OXT O N N 320 PRO H H N N 321 PRO HA H N N 322 PRO HB2 H N N 323 PRO HB3 H N N 324 PRO HG2 H N N 325 PRO HG3 H N N 326 PRO HD2 H N N 327 PRO HD3 H N N 328 PRO HXT H N N 329 SER N N N N 330 SER CA C N S 331 SER C C N N 332 SER O O N N 333 SER CB C N N 334 SER OG O N N 335 SER OXT O N N 336 SER H H N N 337 SER H2 H N N 338 SER HA H N N 339 SER HB2 H N N 340 SER HB3 H N N 341 SER HG H N N 342 SER HXT H N N 343 THR N N N N 344 THR CA C N S 345 THR C C N N 346 THR O O N N 347 THR CB C N R 348 THR OG1 O N N 349 THR CG2 C N N 350 THR OXT O N N 351 THR H H N N 352 THR H2 H N N 353 THR HA H N N 354 THR HB H N N 355 THR HG1 H N N 356 THR HG21 H N N 357 THR HG22 H N N 358 THR HG23 H N N 359 THR HXT H N N 360 TYR N N N N 361 TYR CA C N S 362 TYR C C N N 363 TYR O O N N 364 TYR CB C N N 365 TYR CG C Y N 366 TYR CD1 C Y N 367 TYR CD2 C Y N 368 TYR CE1 C Y N 369 TYR CE2 C Y N 370 TYR CZ C Y N 371 TYR OH O N N 372 TYR OXT O N N 373 TYR H H N N 374 TYR H2 H N N 375 TYR HA H N N 376 TYR HB2 H N N 377 TYR HB3 H N N 378 TYR HD1 H N N 379 TYR HD2 H N N 380 TYR HE1 H N N 381 TYR HE2 H N N 382 TYR HH H N N 383 TYR HXT H N N 384 VAL N N N N 385 VAL CA C N S 386 VAL C C N N 387 VAL O O N N 388 VAL CB C N N 389 VAL CG1 C N N 390 VAL CG2 C N N 391 VAL OXT O N N 392 VAL H H N N 393 VAL H2 H N N 394 VAL HA H N N 395 VAL HB H N N 396 VAL HG11 H N N 397 VAL HG12 H N N 398 VAL HG13 H N N 399 VAL HG21 H N N 400 VAL HG22 H N N 401 VAL HG23 H N N 402 VAL HXT H N N 403 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A3G C O doub N N 1 A3G C N8 sing N N 2 A3G C CA sing N N 3 A3G N CA sing N N 4 A3G N1 C2 doub Y N 5 A3G N1 C6 sing Y N 6 A3G C2 N3 sing Y N 7 A3G N3 C4 doub Y N 8 A3G C4 C5 sing Y N 9 A3G C4 N9 sing Y N 10 A3G C5 C6 doub Y N 11 A3G C5 N7 sing Y N 12 A3G C6 N6 sing N N 13 A3G N7 C8 doub Y N 14 A3G C8 N9 sing Y N 15 A3G N8 "C3'" sing N N 16 A3G N9 "C1'" sing N N 17 A3G "C1'" "C2'" sing N N 18 A3G "C1'" "O4'" sing N N 19 A3G "C2'" "O2'" sing N N 20 A3G "C2'" "C3'" sing N N 21 A3G "C3'" "C4'" sing N N 22 A3G "C4'" "O4'" sing N N 23 A3G "C4'" "C5'" sing N N 24 A3G "C5'" "O5'" sing N N 25 A3G N HN sing N N 26 A3G N HNA sing N N 27 A3G C2 H2 sing N N 28 A3G N6 HN6 sing N N 29 A3G N6 HN6A sing N N 30 A3G C8 H8 sing N N 31 A3G N8 HN8 sing N N 32 A3G CA HA sing N N 33 A3G CA HAA sing N N 34 A3G "C1'" "H1'" sing N N 35 A3G "C2'" "H2'" sing N N 36 A3G "O2'" "HO2'" sing N N 37 A3G "C3'" "H3'" sing N N 38 A3G "C4'" "H4'" sing N N 39 A3G "C5'" "H5'" sing N N 40 A3G "C5'" "H5'A" sing N N 41 A3G "O5'" "HO5'" sing N N 42 ALA N CA sing N N 43 ALA N H sing N N 44 ALA N H2 sing N N 45 ALA CA C sing N N 46 ALA CA CB sing N N 47 ALA CA HA sing N N 48 ALA C O doub N N 49 ALA C OXT sing N N 50 ALA CB HB1 sing N N 51 ALA CB HB2 sing N N 52 ALA CB HB3 sing N N 53 ALA OXT HXT sing N N 54 ARG N CA sing N N 55 ARG N H sing N N 56 ARG N H2 sing N N 57 ARG CA C sing N N 58 ARG CA CB sing N N 59 ARG CA HA sing N N 60 ARG C O doub N N 61 ARG C OXT sing N N 62 ARG CB CG sing N N 63 ARG CB HB2 sing N N 64 ARG CB HB3 sing N N 65 ARG CG CD sing N N 66 ARG CG HG2 sing N N 67 ARG CG HG3 sing N N 68 ARG CD NE sing N N 69 ARG CD HD2 sing N N 70 ARG CD HD3 sing N N 71 ARG NE CZ sing N N 72 ARG NE HE sing N N 73 ARG CZ NH1 sing N N 74 ARG CZ NH2 doub N N 75 ARG NH1 HH11 sing N N 76 ARG NH1 HH12 sing N N 77 ARG NH2 HH21 sing N N 78 ARG NH2 HH22 sing N N 79 ARG OXT HXT sing N N 80 ASN N CA sing N N 81 ASN N H sing N N 82 ASN N H2 sing N N 83 ASN CA C sing N N 84 ASN CA CB sing N N 85 ASN CA HA sing N N 86 ASN C O doub N N 87 ASN C OXT sing N N 88 ASN CB CG sing N N 89 ASN CB HB2 sing N N 90 ASN CB HB3 sing N N 91 ASN CG OD1 doub N N 92 ASN CG ND2 sing N N 93 ASN ND2 HD21 sing N N 94 ASN ND2 HD22 sing N N 95 ASN OXT HXT sing N N 96 ASP N CA sing N N 97 ASP N H sing N N 98 ASP N H2 sing N N 99 ASP CA C sing N N 100 ASP CA CB sing N N 101 ASP CA HA sing N N 102 ASP C O doub N N 103 ASP C OXT sing N N 104 ASP CB CG sing N N 105 ASP CB HB2 sing N N 106 ASP CB HB3 sing N N 107 ASP CG OD1 doub N N 108 ASP CG OD2 sing N N 109 ASP OD2 HD2 sing N N 110 ASP OXT HXT sing N N 111 CYS N CA sing N N 112 CYS N H sing N N 113 CYS N H2 sing N N 114 CYS CA C sing N N 115 CYS CA CB sing N N 116 CYS CA HA sing N N 117 CYS C O doub N N 118 CYS C OXT sing N N 119 CYS CB SG sing N N 120 CYS CB HB2 sing N N 121 CYS CB HB3 sing N N 122 CYS SG HG sing N N 123 CYS OXT HXT sing N N 124 GLN N CA sing N N 125 GLN N H sing N N 126 GLN N H2 sing N N 127 GLN CA C sing N N 128 GLN CA CB sing N N 129 GLN CA HA sing N N 130 GLN C O doub N N 131 GLN C OXT sing N N 132 GLN CB CG sing N N 133 GLN CB HB2 sing N N 134 GLN CB HB3 sing N N 135 GLN CG CD sing N N 136 GLN CG HG2 sing N N 137 GLN CG HG3 sing N N 138 GLN CD OE1 doub N N 139 GLN CD NE2 sing N N 140 GLN NE2 HE21 sing N N 141 GLN NE2 HE22 sing N N 142 GLN OXT HXT sing N N 143 GLU N CA sing N N 144 GLU N H sing N N 145 GLU N H2 sing N N 146 GLU CA C sing N N 147 GLU CA CB sing N N 148 GLU CA HA sing N N 149 GLU C O doub N N 150 GLU C OXT sing N N 151 GLU CB CG sing N N 152 GLU CB HB2 sing N N 153 GLU CB HB3 sing N N 154 GLU CG CD sing N N 155 GLU CG HG2 sing N N 156 GLU CG HG3 sing N N 157 GLU CD OE1 doub N N 158 GLU CD OE2 sing N N 159 GLU OE2 HE2 sing N N 160 GLU OXT HXT sing N N 161 GLY N CA sing N N 162 GLY N H sing N N 163 GLY N H2 sing N N 164 GLY CA C sing N N 165 GLY CA HA2 sing N N 166 GLY CA HA3 sing N N 167 GLY C O doub N N 168 GLY C OXT sing N N 169 GLY OXT HXT sing N N 170 HIS N CA sing N N 171 HIS N H sing N N 172 HIS N H2 sing N N 173 HIS CA C sing N N 174 HIS CA CB sing N N 175 HIS CA HA sing N N 176 HIS C O doub N N 177 HIS C OXT sing N N 178 HIS CB CG sing N N 179 HIS CB HB2 sing N N 180 HIS CB HB3 sing N N 181 HIS CG ND1 sing Y N 182 HIS CG CD2 doub Y N 183 HIS ND1 CE1 doub Y N 184 HIS ND1 HD1 sing N N 185 HIS CD2 NE2 sing Y N 186 HIS CD2 HD2 sing N N 187 HIS CE1 NE2 sing Y N 188 HIS CE1 HE1 sing N N 189 HIS NE2 HE2 sing N N 190 HIS OXT HXT sing N N 191 HOH O H1 sing N N 192 HOH O H2 sing N N 193 ILE N CA sing N N 194 ILE N H sing N N 195 ILE N H2 sing N N 196 ILE CA C sing N N 197 ILE CA CB sing N N 198 ILE CA HA sing N N 199 ILE C O doub N N 200 ILE C OXT sing N N 201 ILE CB CG1 sing N N 202 ILE CB CG2 sing N N 203 ILE CB HB sing N N 204 ILE CG1 CD1 sing N N 205 ILE CG1 HG12 sing N N 206 ILE CG1 HG13 sing N N 207 ILE CG2 HG21 sing N N 208 ILE CG2 HG22 sing N N 209 ILE CG2 HG23 sing N N 210 ILE CD1 HD11 sing N N 211 ILE CD1 HD12 sing N N 212 ILE CD1 HD13 sing N N 213 ILE OXT HXT sing N N 214 LEU N CA sing N N 215 LEU N H sing N N 216 LEU N H2 sing N N 217 LEU CA C sing N N 218 LEU CA CB sing N N 219 LEU CA HA sing N N 220 LEU C O doub N N 221 LEU C OXT sing N N 222 LEU CB CG sing N N 223 LEU CB HB2 sing N N 224 LEU CB HB3 sing N N 225 LEU CG CD1 sing N N 226 LEU CG CD2 sing N N 227 LEU CG HG sing N N 228 LEU CD1 HD11 sing N N 229 LEU CD1 HD12 sing N N 230 LEU CD1 HD13 sing N N 231 LEU CD2 HD21 sing N N 232 LEU CD2 HD22 sing N N 233 LEU CD2 HD23 sing N N 234 LEU OXT HXT sing N N 235 LYS N CA sing N N 236 LYS N H sing N N 237 LYS N H2 sing N N 238 LYS CA C sing N N 239 LYS CA CB sing N N 240 LYS CA HA sing N N 241 LYS C O doub N N 242 LYS C OXT sing N N 243 LYS CB CG sing N N 244 LYS CB HB2 sing N N 245 LYS CB HB3 sing N N 246 LYS CG CD sing N N 247 LYS CG HG2 sing N N 248 LYS CG HG3 sing N N 249 LYS CD CE sing N N 250 LYS CD HD2 sing N N 251 LYS CD HD3 sing N N 252 LYS CE NZ sing N N 253 LYS CE HE2 sing N N 254 LYS CE HE3 sing N N 255 LYS NZ HZ1 sing N N 256 LYS NZ HZ2 sing N N 257 LYS NZ HZ3 sing N N 258 LYS OXT HXT sing N N 259 MET N CA sing N N 260 MET N H sing N N 261 MET N H2 sing N N 262 MET CA C sing N N 263 MET CA CB sing N N 264 MET CA HA sing N N 265 MET C O doub N N 266 MET C OXT sing N N 267 MET CB CG sing N N 268 MET CB HB2 sing N N 269 MET CB HB3 sing N N 270 MET CG SD sing N N 271 MET CG HG2 sing N N 272 MET CG HG3 sing N N 273 MET SD CE sing N N 274 MET CE HE1 sing N N 275 MET CE HE2 sing N N 276 MET CE HE3 sing N N 277 MET OXT HXT sing N N 278 PHE N CA sing N N 279 PHE N H sing N N 280 PHE N H2 sing N N 281 PHE CA C sing N N 282 PHE CA CB sing N N 283 PHE CA HA sing N N 284 PHE C O doub N N 285 PHE C OXT sing N N 286 PHE CB CG sing N N 287 PHE CB HB2 sing N N 288 PHE CB HB3 sing N N 289 PHE CG CD1 doub Y N 290 PHE CG CD2 sing Y N 291 PHE CD1 CE1 sing Y N 292 PHE CD1 HD1 sing N N 293 PHE CD2 CE2 doub Y N 294 PHE CD2 HD2 sing N N 295 PHE CE1 CZ doub Y N 296 PHE CE1 HE1 sing N N 297 PHE CE2 CZ sing Y N 298 PHE CE2 HE2 sing N N 299 PHE CZ HZ sing N N 300 PHE OXT HXT sing N N 301 PRO N CA sing N N 302 PRO N CD sing N N 303 PRO N H sing N N 304 PRO CA C sing N N 305 PRO CA CB sing N N 306 PRO CA HA sing N N 307 PRO C O doub N N 308 PRO C OXT sing N N 309 PRO CB CG sing N N 310 PRO CB HB2 sing N N 311 PRO CB HB3 sing N N 312 PRO CG CD sing N N 313 PRO CG HG2 sing N N 314 PRO CG HG3 sing N N 315 PRO CD HD2 sing N N 316 PRO CD HD3 sing N N 317 PRO OXT HXT sing N N 318 SER N CA sing N N 319 SER N H sing N N 320 SER N H2 sing N N 321 SER CA C sing N N 322 SER CA CB sing N N 323 SER CA HA sing N N 324 SER C O doub N N 325 SER C OXT sing N N 326 SER CB OG sing N N 327 SER CB HB2 sing N N 328 SER CB HB3 sing N N 329 SER OG HG sing N N 330 SER OXT HXT sing N N 331 THR N CA sing N N 332 THR N H sing N N 333 THR N H2 sing N N 334 THR CA C sing N N 335 THR CA CB sing N N 336 THR CA HA sing N N 337 THR C O doub N N 338 THR C OXT sing N N 339 THR CB OG1 sing N N 340 THR CB CG2 sing N N 341 THR CB HB sing N N 342 THR OG1 HG1 sing N N 343 THR CG2 HG21 sing N N 344 THR CG2 HG22 sing N N 345 THR CG2 HG23 sing N N 346 THR OXT HXT sing N N 347 TYR N CA sing N N 348 TYR N H sing N N 349 TYR N H2 sing N N 350 TYR CA C sing N N 351 TYR CA CB sing N N 352 TYR CA HA sing N N 353 TYR C O doub N N 354 TYR C OXT sing N N 355 TYR CB CG sing N N 356 TYR CB HB2 sing N N 357 TYR CB HB3 sing N N 358 TYR CG CD1 doub Y N 359 TYR CG CD2 sing Y N 360 TYR CD1 CE1 sing Y N 361 TYR CD1 HD1 sing N N 362 TYR CD2 CE2 doub Y N 363 TYR CD2 HD2 sing N N 364 TYR CE1 CZ doub Y N 365 TYR CE1 HE1 sing N N 366 TYR CE2 CZ sing Y N 367 TYR CE2 HE2 sing N N 368 TYR CZ OH sing N N 369 TYR OH HH sing N N 370 TYR OXT HXT sing N N 371 VAL N CA sing N N 372 VAL N H sing N N 373 VAL N H2 sing N N 374 VAL CA C sing N N 375 VAL CA CB sing N N 376 VAL CA HA sing N N 377 VAL C O doub N N 378 VAL C OXT sing N N 379 VAL CB CG1 sing N N 380 VAL CB CG2 sing N N 381 VAL CB HB sing N N 382 VAL CG1 HG11 sing N N 383 VAL CG1 HG12 sing N N 384 VAL CG1 HG13 sing N N 385 VAL CG2 HG21 sing N N 386 VAL CG2 HG22 sing N N 387 VAL CG2 HG23 sing N N 388 VAL OXT HXT sing N N 389 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "3'-deoxy-3'-(glycylamino)adenosine" A3G 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1Y2Q _pdbx_initial_refinement_model.details 'PDB ENTRY 1Y2Q' #