data_3PET # _entry.id 3PET # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3PET pdb_00003pet 10.2210/pdb3pet/pdb RCSB RCSB062290 ? ? WWPDB D_1000062290 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 386554 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3PET _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-10-27 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a putative adhesin (BF0245) from Bacteroides fragilis NCTC 9343 at 2.07 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3PET _cell.length_a 38.590 _cell.length_b 60.700 _cell.length_c 205.110 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3PET _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative adhesin' 23451.369 2 ? ? 'sequence database residues 25-244' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 2 ? ? ? ? 4 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 14 ? ? ? ? 5 water nat water 18.015 304 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Putative lipoprotein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GGEGIQPSKKLITRDYKVKEFNKIDAGTVGNIYYTQSTDGKTDLQIYGPDNIVALIQVAVKDNTLFLSIDKSKKVRNFKK (MSE)KITITSPTLNGISFKGVGDVHIENGLTTDNLDIESKGVGNVDIQSLTCQKLNVQS(MSE)GVGDVKLEGTAQIAA LHSKGVGNIEAGNLRANAVEASSQGVGDITCNATESIDAAVRGVGSIKYKGSPTIKSLSKKGVGTIKNI ; _entity_poly.pdbx_seq_one_letter_code_can ;GGEGIQPSKKLITRDYKVKEFNKIDAGTVGNIYYTQSTDGKTDLQIYGPDNIVALIQVAVKDNTLFLSIDKSKKVRNFKK MKITITSPTLNGISFKGVGDVHIENGLTTDNLDIESKGVGNVDIQSLTCQKLNVQSMGVGDVKLEGTAQIAALHSKGVGN IEAGNLRANAVEASSQGVGDITCNATESIDAAVRGVGSIKYKGSPTIKSLSKKGVGTIKNI ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 386554 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 GLU n 1 4 GLY n 1 5 ILE n 1 6 GLN n 1 7 PRO n 1 8 SER n 1 9 LYS n 1 10 LYS n 1 11 LEU n 1 12 ILE n 1 13 THR n 1 14 ARG n 1 15 ASP n 1 16 TYR n 1 17 LYS n 1 18 VAL n 1 19 LYS n 1 20 GLU n 1 21 PHE n 1 22 ASN n 1 23 LYS n 1 24 ILE n 1 25 ASP n 1 26 ALA n 1 27 GLY n 1 28 THR n 1 29 VAL n 1 30 GLY n 1 31 ASN n 1 32 ILE n 1 33 TYR n 1 34 TYR n 1 35 THR n 1 36 GLN n 1 37 SER n 1 38 THR n 1 39 ASP n 1 40 GLY n 1 41 LYS n 1 42 THR n 1 43 ASP n 1 44 LEU n 1 45 GLN n 1 46 ILE n 1 47 TYR n 1 48 GLY n 1 49 PRO n 1 50 ASP n 1 51 ASN n 1 52 ILE n 1 53 VAL n 1 54 ALA n 1 55 LEU n 1 56 ILE n 1 57 GLN n 1 58 VAL n 1 59 ALA n 1 60 VAL n 1 61 LYS n 1 62 ASP n 1 63 ASN n 1 64 THR n 1 65 LEU n 1 66 PHE n 1 67 LEU n 1 68 SER n 1 69 ILE n 1 70 ASP n 1 71 LYS n 1 72 SER n 1 73 LYS n 1 74 LYS n 1 75 VAL n 1 76 ARG n 1 77 ASN n 1 78 PHE n 1 79 LYS n 1 80 LYS n 1 81 MSE n 1 82 LYS n 1 83 ILE n 1 84 THR n 1 85 ILE n 1 86 THR n 1 87 SER n 1 88 PRO n 1 89 THR n 1 90 LEU n 1 91 ASN n 1 92 GLY n 1 93 ILE n 1 94 SER n 1 95 PHE n 1 96 LYS n 1 97 GLY n 1 98 VAL n 1 99 GLY n 1 100 ASP n 1 101 VAL n 1 102 HIS n 1 103 ILE n 1 104 GLU n 1 105 ASN n 1 106 GLY n 1 107 LEU n 1 108 THR n 1 109 THR n 1 110 ASP n 1 111 ASN n 1 112 LEU n 1 113 ASP n 1 114 ILE n 1 115 GLU n 1 116 SER n 1 117 LYS n 1 118 GLY n 1 119 VAL n 1 120 GLY n 1 121 ASN n 1 122 VAL n 1 123 ASP n 1 124 ILE n 1 125 GLN n 1 126 SER n 1 127 LEU n 1 128 THR n 1 129 CYS n 1 130 GLN n 1 131 LYS n 1 132 LEU n 1 133 ASN n 1 134 VAL n 1 135 GLN n 1 136 SER n 1 137 MSE n 1 138 GLY n 1 139 VAL n 1 140 GLY n 1 141 ASP n 1 142 VAL n 1 143 LYS n 1 144 LEU n 1 145 GLU n 1 146 GLY n 1 147 THR n 1 148 ALA n 1 149 GLN n 1 150 ILE n 1 151 ALA n 1 152 ALA n 1 153 LEU n 1 154 HIS n 1 155 SER n 1 156 LYS n 1 157 GLY n 1 158 VAL n 1 159 GLY n 1 160 ASN n 1 161 ILE n 1 162 GLU n 1 163 ALA n 1 164 GLY n 1 165 ASN n 1 166 LEU n 1 167 ARG n 1 168 ALA n 1 169 ASN n 1 170 ALA n 1 171 VAL n 1 172 GLU n 1 173 ALA n 1 174 SER n 1 175 SER n 1 176 GLN n 1 177 GLY n 1 178 VAL n 1 179 GLY n 1 180 ASP n 1 181 ILE n 1 182 THR n 1 183 CYS n 1 184 ASN n 1 185 ALA n 1 186 THR n 1 187 GLU n 1 188 SER n 1 189 ILE n 1 190 ASP n 1 191 ALA n 1 192 ALA n 1 193 VAL n 1 194 ARG n 1 195 GLY n 1 196 VAL n 1 197 GLY n 1 198 SER n 1 199 ILE n 1 200 LYS n 1 201 TYR n 1 202 LYS n 1 203 GLY n 1 204 SER n 1 205 PRO n 1 206 THR n 1 207 ILE n 1 208 LYS n 1 209 SER n 1 210 LEU n 1 211 SER n 1 212 LYS n 1 213 LYS n 1 214 GLY n 1 215 VAL n 1 216 GLY n 1 217 THR n 1 218 ILE n 1 219 LYS n 1 220 ASN n 1 221 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BF0202 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 25285 / NCTC 9343' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides fragilis NCTC 9343' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272559 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5LIP7_BACFN _struct_ref.pdbx_db_accession Q5LIP7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GEGIQPSKKLITRDYKVKEFNKIDAGTVGNIYYTQSTDGKTDLQIYGPDNIVALIQVAVKDNTLFLSIDKSKKVRNFKKM KITITSPTLNGISFKGVGDVHIENGLTTDNLDIESKGVGNVDIQSLTCQKLNVQSMGVGDVKLEGTAQIAALHSKGVGNI EAGNLRANAVEASSQGVGDITCNATESIDAAVRGVGSIKYKGSPTIKSLSKKGVGTIKNI ; _struct_ref.pdbx_align_begin 25 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3PET A 2 ? 221 ? Q5LIP7 25 ? 244 ? 25 244 2 1 3PET B 2 ? 221 ? Q5LIP7 25 ? 244 ? 25 244 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3PET GLY A 1 ? UNP Q5LIP7 ? ? 'expression tag' 0 1 2 3PET GLY B 1 ? UNP Q5LIP7 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 2 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3PET # loop_ _exptl_crystal.id _exptl_crystal.density_Matthews _exptl_crystal.density_meas _exptl_crystal.density_percent_sol _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.preparation 1 2.56 ? 51.97 'DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND ' ? ? 2 ? ? ? ? ? ? # loop_ _exptl_crystal_grow.crystal_id _exptl_crystal_grow.method _exptl_crystal_grow.pH _exptl_crystal_grow.temp _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.temp_details _exptl_crystal_grow.pdbx_pH_range 1 'VAPOR DIFFUSION, SITTING DROP' 3.85 293 ;0.20M sodium chloride, 31.8% polyethylene glycol 300, 0.1M sodium acetate pH 3.85, NANODROP, temperature 293K, VAPOR DIFFUSION, SITTING DROP ; ? ? 2 'VAPOR DIFFUSION, SITTING DROP' 4.5 277 ;GNF2 E12: 0.20M sodium chloride, 40.0% polyethylene glycol 300, 0.1M sodium acetate pH 4.5, NANODROP, temperature 277K, VAPOR DIFFUSION, SITTING DROP ; ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 2 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.details _diffrn_detector.pdbx_collection_date 1 CCD 'MARMOSAIC 325 mm CCD' ? 2010-07-22 2 CCD 'MARMOSAIC 325 mm CCD' ? 2010-04-08 # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_scattering_type 1 M 'Double crystal monochromator' MAD 1 x-ray 2 M 'Single crystal Si(111) bent monochromator (horizontal focusing)' MAD 2 x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97893 1.0 2 0.97954 1.0 3 0.91837 1.0 4 0.97917 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site 1 SYNCHROTRON BL9-2 'SSRL BEAMLINE BL9-2' ? 0.97893 SSRL 2 SYNCHROTRON BL11-1 'SSRL BEAMLINE BL11-1' '0.97954, 0.91837, 0.97917' ? SSRL # _reflns.entry_id 3PET _reflns.d_resolution_high 2.07 _reflns.d_resolution_low 45.392 _reflns.number_obs 30470 _reflns.pdbx_Rmerge_I_obs 0.153 _reflns.pdbx_netI_over_sigmaI 8.850 _reflns.percent_possible_obs 100.000 _reflns.B_iso_Wilson_estimate 21.558 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.070 2.140 25278 ? 5397 0.814 2.2 ? ? ? ? ? 100.000 1 1,2 2.140 2.230 27742 ? 5942 0.600 2.9 ? ? ? ? ? 100.000 2 1,2 2.230 2.330 26284 ? 5627 0.503 3.3 ? ? ? ? ? 100.000 3 1,2 2.330 2.450 26020 ? 5541 0.435 3.7 ? ? ? ? ? 100.000 4 1,2 2.450 2.610 27730 ? 5901 0.396 4.0 ? ? ? ? ? 100.000 5 1,2 2.610 2.810 26657 ? 5652 0.297 5.3 ? ? ? ? ? 100.000 6 1,2 2.810 3.090 26288 ? 5596 0.188 8.1 ? ? ? ? ? 100.000 7 1,2 3.090 3.530 26890 ? 5670 0.098 14.2 ? ? ? ? ? 100.000 8 1,2 3.530 4.440 26810 ? 5679 0.062 21.1 ? ? ? ? ? 100.000 9 1,2 4.440 45.392 27320 ? 5776 0.048 23.4 ? ? ? ? ? 99.800 10 1,2 # _refine.entry_id 3PET _refine.ls_d_res_high 2.0700 _refine.ls_d_res_low 45.392 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs ? _refine.ls_number_reflns_obs 30217 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. CHLORIDE (CL), ACETATE (ACT), POLYETHYLENE GLYCOL FRAGMENTS (PG4) MODELED ARE PRESENT PROTEIN/CRYSTALLIZATION/CRYO BUFFER. 3. NON-CRYSTALLOGRAPHIC RESTRAINTS WERE APPLIED DURING REFINEMENT (AUTONCS). 4. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 5. REFINEMENT WAS RESTRAINED TO THE MAD PHASES ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1775 _refine.ls_R_factor_R_work 0.1758 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2102 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0600 _refine.ls_number_reflns_R_free 1530 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 28.8360 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -5.6207 _refine.aniso_B[2][2] -0.9225 _refine.aniso_B[3][3] 6.5433 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9491 _refine.correlation_coeff_Fo_to_Fc_free 0.9210 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 106.680 _refine.B_iso_min 11.080 _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1,2 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3204 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 151 _refine_hist.number_atoms_solvent 304 _refine_hist.number_atoms_total 3659 _refine_hist.d_res_high 2.0700 _refine_hist.d_res_low 45.392 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_dihedral_angle_d 1731 ? ? 2.000 'X-RAY DIFFRACTION' SINUSOIDAL t_trig_c_planes 100 ? ? 2.000 'X-RAY DIFFRACTION' HARMONIC t_gen_planes 496 ? ? 5.000 'X-RAY DIFFRACTION' HARMONIC t_it 3465 ? ? 20.000 'X-RAY DIFFRACTION' HARMONIC t_nbd 2 ? ? 5.000 'X-RAY DIFFRACTION' SEMIHARMONIC t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion 484 ? ? 5.000 'X-RAY DIFFRACTION' SEMIHARMONIC t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact 3788 ? ? 4.000 'X-RAY DIFFRACTION' SEMIHARMONIC t_bond_d 3465 0.010 ? 2.000 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 4641 1.220 ? 2.000 'X-RAY DIFFRACTION' HARMONIC t_omega_torsion ? 3.830 ? ? 'X-RAY DIFFRACTION' ? t_other_torsion ? 2.710 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.0700 _refine_ls_shell.d_res_low 2.1400 _refine_ls_shell.pdbx_total_number_of_bins_used 15 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 2617 _refine_ls_shell.R_factor_all 0.1884 _refine_ls_shell.R_factor_R_work 0.1868 _refine_ls_shell.R_factor_R_free 0.2175 _refine_ls_shell.percent_reflns_R_free 5.1800 _refine_ls_shell.number_reflns_R_free 143 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2760 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3PET _struct.title 'Crystal structure of a putative adhesin (BF0245) from Bacteroides fragilis NCTC 9343 at 2.07 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;RIGHT-HANDED BETA-HELIX, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, CELL ADHESION ; _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.entry_id 3PET # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 2 ? N N N 3 ? O N N 4 ? P N N 4 ? Q N N 4 ? R N N 4 ? S N N 4 ? T N N 4 ? U N N 5 ? V N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 50 ? ALA A 54 ? ASP A 73 ALA A 77 1 ? 5 HELX_P HELX_P2 2 ASP B 50 ? ALA B 54 ? ASP B 73 ALA B 77 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LYS 80 C ? ? ? 1_555 A MSE 81 N ? ? A LYS 103 A MSE 104 1_555 ? ? ? ? ? ? ? 1.363 ? ? covale2 covale both ? A MSE 81 C ? ? ? 1_555 A LYS 82 N ? ? A MSE 104 A LYS 105 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale3 covale both ? A SER 136 C ? ? ? 1_555 A MSE 137 N ? ? A SER 159 A MSE 160 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? A MSE 137 C ? ? ? 1_555 A GLY 138 N ? ? A MSE 160 A GLY 161 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale5 covale both ? B LYS 80 C ? ? ? 1_555 B MSE 81 N ? ? B LYS 103 B MSE 104 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale6 covale both ? B MSE 81 C ? ? ? 1_555 B LYS 82 N ? ? B MSE 104 B LYS 105 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale7 covale both ? B SER 136 C ? ? ? 1_555 B MSE 137 N ? ? B SER 159 B MSE 160 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale8 covale both ? B MSE 137 C ? ? ? 1_555 B GLY 138 N ? ? B MSE 160 B GLY 161 1_555 ? ? ? ? ? ? ? 1.316 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 8 ? C ? 7 ? D ? 7 ? E ? 8 ? F ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? parallel B 6 7 ? parallel B 7 8 ? anti-parallel C 1 2 ? parallel C 2 3 ? parallel C 3 4 ? parallel C 4 5 ? parallel C 5 6 ? parallel C 6 7 ? parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? parallel D 4 5 ? parallel D 5 6 ? parallel D 6 7 ? parallel E 1 2 ? parallel E 2 3 ? parallel E 3 4 ? parallel E 4 5 ? parallel E 5 6 ? parallel E 6 7 ? parallel E 7 8 ? anti-parallel F 1 2 ? parallel F 2 3 ? parallel F 3 4 ? parallel F 4 5 ? parallel F 5 6 ? parallel F 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 11 ? TYR A 16 ? LEU A 34 TYR A 39 A 2 ASP A 43 ? PRO A 49 ? ASP A 66 PRO A 72 A 3 LYS A 82 ? SER A 87 ? LYS A 105 SER A 110 A 4 ASN A 31 ? GLN A 36 ? ASN A 54 GLN A 59 A 5 VAL A 101 ? ILE A 103 ? VAL A 124 ILE A 126 A 6 VAL A 122 ? THR A 128 ? VAL A 145 THR A 151 A 7 LEU A 107 ? THR A 108 ? LEU A 130 THR A 131 B 1 VAL A 122 ? THR A 128 ? VAL A 145 THR A 151 B 2 VAL A 142 ? SER A 155 ? VAL A 165 SER A 178 B 3 LYS A 131 ? SER A 136 ? LYS A 154 SER A 159 B 4 ASN A 111 ? SER A 116 ? ASN A 134 SER A 139 B 5 GLY A 92 ? PHE A 95 ? GLY A 115 PHE A 118 B 6 LYS A 23 ? ALA A 26 ? LYS A 46 ALA A 49 B 7 THR A 64 ? ILE A 69 ? THR A 87 ILE A 92 B 8 ILE A 56 ? LYS A 61 ? ILE A 79 LYS A 84 C 1 VAL A 142 ? SER A 155 ? VAL A 165 SER A 178 C 2 ILE A 161 ? SER A 175 ? ILE A 184 SER A 198 C 3 ILE A 181 ? VAL A 193 ? ILE A 204 VAL A 216 C 4 ILE A 207 ? LYS A 212 ? ILE A 230 LYS A 235 C 5 ILE A 181 ? VAL A 193 ? ILE A 204 VAL A 216 C 6 ILE A 199 ? LYS A 202 ? ILE A 222 LYS A 225 C 7 ILE A 218 ? ASN A 220 ? ILE A 241 ASN A 243 D 1 LEU B 11 ? TYR B 16 ? LEU B 34 TYR B 39 D 2 ASP B 43 ? PRO B 49 ? ASP B 66 PRO B 72 D 3 LYS B 82 ? SER B 87 ? LYS B 105 SER B 110 D 4 ASN B 31 ? GLN B 36 ? ASN B 54 GLN B 59 D 5 VAL B 101 ? ILE B 103 ? VAL B 124 ILE B 126 D 6 VAL B 122 ? THR B 128 ? VAL B 145 THR B 151 D 7 LEU B 107 ? THR B 108 ? LEU B 130 THR B 131 E 1 VAL B 122 ? THR B 128 ? VAL B 145 THR B 151 E 2 VAL B 142 ? SER B 155 ? VAL B 165 SER B 178 E 3 LYS B 131 ? SER B 136 ? LYS B 154 SER B 159 E 4 ASN B 111 ? SER B 116 ? ASN B 134 SER B 139 E 5 GLY B 92 ? PHE B 95 ? GLY B 115 PHE B 118 E 6 LYS B 23 ? ALA B 26 ? LYS B 46 ALA B 49 E 7 THR B 64 ? ILE B 69 ? THR B 87 ILE B 92 E 8 ILE B 56 ? LYS B 61 ? ILE B 79 LYS B 84 F 1 VAL B 142 ? SER B 155 ? VAL B 165 SER B 178 F 2 ILE B 161 ? SER B 175 ? ILE B 184 SER B 198 F 3 ILE B 181 ? VAL B 193 ? ILE B 204 VAL B 216 F 4 ILE B 207 ? LYS B 212 ? ILE B 230 LYS B 235 F 5 ILE B 181 ? VAL B 193 ? ILE B 204 VAL B 216 F 6 ILE B 199 ? LYS B 202 ? ILE B 222 LYS B 225 F 7 ILE B 218 ? ASN B 220 ? ILE B 241 ASN B 243 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 14 ? N ARG A 37 O ILE A 46 ? O ILE A 69 A 2 3 N GLN A 45 ? N GLN A 68 O THR A 84 ? O THR A 107 A 3 4 O ILE A 83 ? O ILE A 106 N ASN A 31 ? N ASN A 54 A 4 5 N TYR A 34 ? N TYR A 57 O HIS A 102 ? O HIS A 125 A 5 6 N VAL A 101 ? N VAL A 124 O ASP A 123 ? O ASP A 146 A 6 7 O THR A 128 ? O THR A 151 N LEU A 107 ? N LEU A 130 B 1 2 N VAL A 122 ? N VAL A 145 O LYS A 143 ? O LYS A 166 B 2 3 O ALA A 152 ? O ALA A 175 N LEU A 132 ? N LEU A 155 B 3 4 O ASN A 133 ? O ASN A 156 N ILE A 114 ? N ILE A 137 B 4 5 O GLU A 115 ? O GLU A 138 N PHE A 95 ? N PHE A 118 B 5 6 O SER A 94 ? O SER A 117 N ILE A 24 ? N ILE A 47 B 6 7 N ASP A 25 ? N ASP A 48 O LEU A 65 ? O LEU A 88 B 7 8 O PHE A 66 ? O PHE A 89 N ALA A 59 ? N ALA A 82 C 1 2 N LEU A 153 ? N LEU A 176 O GLU A 172 ? O GLU A 195 C 2 3 N ALA A 173 ? N ALA A 196 O ASP A 190 ? O ASP A 213 C 3 4 N ALA A 191 ? N ALA A 214 O SER A 209 ? O SER A 232 C 4 5 O SER A 209 ? O SER A 232 N ALA A 191 ? N ALA A 214 C 5 6 N ILE A 181 ? N ILE A 204 O LYS A 200 ? O LYS A 223 C 6 7 N TYR A 201 ? N TYR A 224 O LYS A 219 ? O LYS A 242 D 1 2 N TYR B 16 ? N TYR B 39 O LEU B 44 ? O LEU B 67 D 2 3 N TYR B 47 ? N TYR B 70 O LYS B 82 ? O LYS B 105 D 3 4 O ILE B 85 ? O ILE B 108 N TYR B 33 ? N TYR B 56 D 4 5 N TYR B 34 ? N TYR B 57 O HIS B 102 ? O HIS B 125 D 5 6 N VAL B 101 ? N VAL B 124 O ASP B 123 ? O ASP B 146 D 6 7 O THR B 128 ? O THR B 151 N LEU B 107 ? N LEU B 130 E 1 2 N VAL B 122 ? N VAL B 145 O LYS B 143 ? O LYS B 166 E 2 3 O ALA B 152 ? O ALA B 175 N LEU B 132 ? N LEU B 155 E 3 4 O ASN B 133 ? O ASN B 156 N ILE B 114 ? N ILE B 137 E 4 5 O GLU B 115 ? O GLU B 138 N ILE B 93 ? N ILE B 116 E 5 6 O SER B 94 ? O SER B 117 N ILE B 24 ? N ILE B 47 E 6 7 N LYS B 23 ? N LYS B 46 O LEU B 65 ? O LEU B 88 E 7 8 O PHE B 66 ? O PHE B 89 N ALA B 59 ? N ALA B 82 F 1 2 N LEU B 153 ? N LEU B 176 O GLU B 172 ? O GLU B 195 F 2 3 N ALA B 173 ? N ALA B 196 O ASP B 190 ? O ASP B 213 F 3 4 N ALA B 191 ? N ALA B 214 O SER B 209 ? O SER B 232 F 4 5 O SER B 209 ? O SER B 232 N ALA B 191 ? N ALA B 214 F 5 6 N ILE B 181 ? N ILE B 204 O LYS B 200 ? O LYS B 223 F 6 7 N TYR B 201 ? N TYR B 224 O LYS B 219 ? O LYS B 242 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 246 ? 3 'BINDING SITE FOR RESIDUE CL A 246' AC2 Software A ACT 247 ? 5 'BINDING SITE FOR RESIDUE ACT A 247' AC3 Software A PG4 249 ? 4 'BINDING SITE FOR RESIDUE PG4 A 249' AC4 Software A PG4 251 ? 8 'BINDING SITE FOR RESIDUE PG4 A 251' AC5 Software A PG4 254 ? 5 'BINDING SITE FOR RESIDUE PG4 A 254' AC6 Software A PG4 255 ? 7 'BINDING SITE FOR RESIDUE PG4 A 255' AC7 Software A PG4 256 ? 5 'BINDING SITE FOR RESIDUE PG4 A 256' AC8 Software A PG4 260 ? 5 'BINDING SITE FOR RESIDUE PG4 A 260' AC9 Software A PG4 261 ? 2 'BINDING SITE FOR RESIDUE PG4 A 261' BC1 Software A PG4 262 ? 5 'BINDING SITE FOR RESIDUE PG4 A 262' BC2 Software B CL 245 ? 3 'BINDING SITE FOR RESIDUE CL B 245' BC3 Software B ACT 248 ? 5 'BINDING SITE FOR RESIDUE ACT B 248' BC4 Software B PG4 250 ? 3 'BINDING SITE FOR RESIDUE PG4 B 250' BC5 Software B PG4 252 ? 3 'BINDING SITE FOR RESIDUE PG4 B 252' BC6 Software B PG4 253 ? 6 'BINDING SITE FOR RESIDUE PG4 B 253' BC7 Software B PG4 257 ? 8 'BINDING SITE FOR RESIDUE PG4 B 257' BC8 Software B PG4 258 ? 4 'BINDING SITE FOR RESIDUE PG4 B 258' BC9 Software B PG4 259 ? 5 'BINDING SITE FOR RESIDUE PG4 B 259' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLU A 162 ? GLU A 185 . ? 1_555 ? 2 AC1 3 ALA A 163 ? ALA A 186 . ? 1_555 ? 3 AC1 3 GLY A 164 ? GLY A 187 . ? 1_555 ? 4 AC2 5 VAL A 29 ? VAL A 52 . ? 1_555 ? 5 AC2 5 ILE A 52 ? ILE A 75 . ? 1_555 ? 6 AC2 5 ILE A 69 ? ILE A 92 . ? 1_555 ? 7 AC2 5 PHE A 78 ? PHE A 101 . ? 1_555 ? 8 AC2 5 MSE A 81 ? MSE A 104 . ? 1_555 ? 9 AC3 4 TYR A 33 ? TYR A 56 . ? 1_555 ? 10 AC3 4 TYR A 47 ? TYR A 70 . ? 1_555 ? 11 AC3 4 LYS A 82 ? LYS A 105 . ? 1_555 ? 12 AC3 4 HOH U . ? HOH A 397 . ? 1_555 ? 13 AC4 8 LYS A 41 ? LYS A 64 . ? 3_645 ? 14 AC4 8 LYS A 71 ? LYS A 94 . ? 1_555 ? 15 AC4 8 LYS A 96 ? LYS A 119 . ? 1_555 ? 16 AC4 8 HOH U . ? HOH A 363 . ? 1_555 ? 17 AC4 8 ARG B 194 ? ARG B 217 . ? 1_555 ? 18 AC4 8 VAL B 196 ? VAL B 219 . ? 1_555 ? 19 AC4 8 LYS B 213 ? LYS B 236 . ? 1_555 ? 20 AC4 8 VAL B 215 ? VAL B 238 . ? 1_555 ? 21 AC5 5 THR A 38 ? THR A 61 . ? 3_645 ? 22 AC5 5 ASP A 39 ? ASP A 62 . ? 3_645 ? 23 AC5 5 LYS A 61 ? LYS A 84 . ? 1_555 ? 24 AC5 5 PHE A 66 ? PHE A 89 . ? 1_555 ? 25 AC5 5 HOH U . ? HOH A 479 . ? 3_645 ? 26 AC6 7 GLU A 20 ? GLU A 43 . ? 3_645 ? 27 AC6 7 ASN A 22 ? ASN A 45 . ? 3_645 ? 28 AC6 7 ASN A 63 ? ASN A 86 . ? 3_645 ? 29 AC6 7 SER A 72 ? SER A 95 . ? 1_555 ? 30 AC6 7 LYS A 73 ? LYS A 96 . ? 1_555 ? 31 AC6 7 THR A 89 ? THR A 112 . ? 3_645 ? 32 AC6 7 HOH U . ? HOH A 515 . ? 3_645 ? 33 AC7 5 LYS A 156 ? LYS A 179 . ? 1_555 ? 34 AC7 5 GLN A 176 ? GLN A 199 . ? 1_555 ? 35 AC7 5 LYS B 117 ? LYS B 140 . ? 1_555 ? 36 AC7 5 VAL B 119 ? VAL B 142 . ? 1_555 ? 37 AC7 5 PG4 R . ? PG4 B 257 . ? 1_555 ? 38 AC8 5 ALA A 148 ? ALA A 171 . ? 1_555 ? 39 AC8 5 GLN A 149 ? GLN A 172 . ? 1_555 ? 40 AC8 5 ARG A 167 ? ARG A 190 . ? 1_555 ? 41 AC8 5 ASN A 169 ? ASN A 192 . ? 1_555 ? 42 AC8 5 THR A 186 ? THR A 209 . ? 1_555 ? 43 AC9 2 ASN A 105 ? ASN A 128 . ? 1_555 ? 44 AC9 2 HOH U . ? HOH A 549 . ? 1_555 ? 45 BC1 5 ARG A 14 ? ARG A 37 . ? 1_555 ? 46 BC1 5 THR A 38 ? THR A 61 . ? 3_645 ? 47 BC1 5 ILE A 56 ? ILE A 79 . ? 1_555 ? 48 BC1 5 GLN A 57 ? GLN A 80 . ? 1_555 ? 49 BC1 5 VAL A 58 ? VAL A 81 . ? 1_555 ? 50 BC2 3 GLU B 162 ? GLU B 185 . ? 1_555 ? 51 BC2 3 ALA B 163 ? ALA B 186 . ? 1_555 ? 52 BC2 3 GLY B 164 ? GLY B 187 . ? 1_555 ? 53 BC3 5 THR B 28 ? THR B 51 . ? 1_555 ? 54 BC3 5 VAL B 29 ? VAL B 52 . ? 1_555 ? 55 BC3 5 ILE B 69 ? ILE B 92 . ? 1_555 ? 56 BC3 5 PHE B 78 ? PHE B 101 . ? 1_555 ? 57 BC3 5 MSE B 81 ? MSE B 104 . ? 1_555 ? 58 BC4 3 TYR B 33 ? TYR B 56 . ? 1_555 ? 59 BC4 3 TYR B 47 ? TYR B 70 . ? 1_555 ? 60 BC4 3 LYS B 82 ? LYS B 105 . ? 1_555 ? 61 BC5 3 THR B 42 ? THR B 65 . ? 4_446 ? 62 BC5 3 LYS B 61 ? LYS B 84 . ? 1_555 ? 63 BC5 3 PHE B 66 ? PHE B 89 . ? 1_555 ? 64 BC6 6 THR B 147 ? THR B 170 . ? 1_555 ? 65 BC6 6 ALA B 148 ? ALA B 171 . ? 1_555 ? 66 BC6 6 GLN B 149 ? GLN B 172 . ? 1_555 ? 67 BC6 6 ARG B 167 ? ARG B 190 . ? 1_555 ? 68 BC6 6 ASN B 169 ? ASN B 192 . ? 1_555 ? 69 BC6 6 THR B 186 ? THR B 209 . ? 1_555 ? 70 BC7 8 MSE A 137 ? MSE A 160 . ? 1_555 ? 71 BC7 8 LYS A 156 ? LYS A 179 . ? 1_555 ? 72 BC7 8 PG4 I . ? PG4 A 256 . ? 1_555 ? 73 BC7 8 MSE B 137 ? MSE B 160 . ? 1_555 ? 74 BC7 8 VAL B 139 ? VAL B 162 . ? 1_555 ? 75 BC7 8 LYS B 156 ? LYS B 179 . ? 1_555 ? 76 BC7 8 GLY B 157 ? GLY B 180 . ? 1_555 ? 77 BC7 8 VAL B 158 ? VAL B 181 . ? 1_555 ? 78 BC8 4 GLY B 27 ? GLY B 50 . ? 1_555 ? 79 BC8 4 LYS B 71 ? LYS B 94 . ? 1_555 ? 80 BC8 4 LYS B 96 ? LYS B 119 . ? 1_555 ? 81 BC8 4 PG4 T . ? PG4 B 259 . ? 1_555 ? 82 BC9 5 HOH U . ? HOH A 306 . ? 1_555 ? 83 BC9 5 LYS B 96 ? LYS B 119 . ? 1_555 ? 84 BC9 5 GLY B 97 ? GLY B 120 . ? 1_555 ? 85 BC9 5 VAL B 119 ? VAL B 142 . ? 1_555 ? 86 BC9 5 PG4 S . ? PG4 B 258 . ? 1_555 ? # _atom_sites.entry_id 3PET _atom_sites.fract_transf_matrix[1][1] 0.025913 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016474 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004875 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLY 2 25 ? ? ? A . n A 1 3 GLU 3 26 ? ? ? A . n A 1 4 GLY 4 27 27 GLY GLY A . n A 1 5 ILE 5 28 28 ILE ILE A . n A 1 6 GLN 6 29 29 GLN GLN A . n A 1 7 PRO 7 30 30 PRO PRO A . n A 1 8 SER 8 31 31 SER SER A . n A 1 9 LYS 9 32 32 LYS LYS A . n A 1 10 LYS 10 33 33 LYS LYS A . n A 1 11 LEU 11 34 34 LEU LEU A . n A 1 12 ILE 12 35 35 ILE ILE A . n A 1 13 THR 13 36 36 THR THR A . n A 1 14 ARG 14 37 37 ARG ARG A . n A 1 15 ASP 15 38 38 ASP ASP A . n A 1 16 TYR 16 39 39 TYR TYR A . n A 1 17 LYS 17 40 40 LYS LYS A . n A 1 18 VAL 18 41 41 VAL VAL A . n A 1 19 LYS 19 42 42 LYS LYS A . n A 1 20 GLU 20 43 43 GLU GLU A . n A 1 21 PHE 21 44 44 PHE PHE A . n A 1 22 ASN 22 45 45 ASN ASN A . n A 1 23 LYS 23 46 46 LYS LYS A . n A 1 24 ILE 24 47 47 ILE ILE A . n A 1 25 ASP 25 48 48 ASP ASP A . n A 1 26 ALA 26 49 49 ALA ALA A . n A 1 27 GLY 27 50 50 GLY GLY A . n A 1 28 THR 28 51 51 THR THR A . n A 1 29 VAL 29 52 52 VAL VAL A . n A 1 30 GLY 30 53 53 GLY GLY A . n A 1 31 ASN 31 54 54 ASN ASN A . n A 1 32 ILE 32 55 55 ILE ILE A . n A 1 33 TYR 33 56 56 TYR TYR A . n A 1 34 TYR 34 57 57 TYR TYR A . n A 1 35 THR 35 58 58 THR THR A . n A 1 36 GLN 36 59 59 GLN GLN A . n A 1 37 SER 37 60 60 SER SER A . n A 1 38 THR 38 61 61 THR THR A . n A 1 39 ASP 39 62 62 ASP ASP A . n A 1 40 GLY 40 63 63 GLY GLY A . n A 1 41 LYS 41 64 64 LYS LYS A . n A 1 42 THR 42 65 65 THR THR A . n A 1 43 ASP 43 66 66 ASP ASP A . n A 1 44 LEU 44 67 67 LEU LEU A . n A 1 45 GLN 45 68 68 GLN GLN A . n A 1 46 ILE 46 69 69 ILE ILE A . n A 1 47 TYR 47 70 70 TYR TYR A . n A 1 48 GLY 48 71 71 GLY GLY A . n A 1 49 PRO 49 72 72 PRO PRO A . n A 1 50 ASP 50 73 73 ASP ASP A . n A 1 51 ASN 51 74 74 ASN ASN A . n A 1 52 ILE 52 75 75 ILE ILE A . n A 1 53 VAL 53 76 76 VAL VAL A . n A 1 54 ALA 54 77 77 ALA ALA A . n A 1 55 LEU 55 78 78 LEU LEU A . n A 1 56 ILE 56 79 79 ILE ILE A . n A 1 57 GLN 57 80 80 GLN GLN A . n A 1 58 VAL 58 81 81 VAL VAL A . n A 1 59 ALA 59 82 82 ALA ALA A . n A 1 60 VAL 60 83 83 VAL VAL A . n A 1 61 LYS 61 84 84 LYS LYS A . n A 1 62 ASP 62 85 85 ASP ASP A . n A 1 63 ASN 63 86 86 ASN ASN A . n A 1 64 THR 64 87 87 THR THR A . n A 1 65 LEU 65 88 88 LEU LEU A . n A 1 66 PHE 66 89 89 PHE PHE A . n A 1 67 LEU 67 90 90 LEU LEU A . n A 1 68 SER 68 91 91 SER SER A . n A 1 69 ILE 69 92 92 ILE ILE A . n A 1 70 ASP 70 93 93 ASP ASP A . n A 1 71 LYS 71 94 94 LYS LYS A . n A 1 72 SER 72 95 95 SER SER A . n A 1 73 LYS 73 96 96 LYS LYS A . n A 1 74 LYS 74 97 97 LYS LYS A . n A 1 75 VAL 75 98 98 VAL VAL A . n A 1 76 ARG 76 99 99 ARG ARG A . n A 1 77 ASN 77 100 100 ASN ASN A . n A 1 78 PHE 78 101 101 PHE PHE A . n A 1 79 LYS 79 102 102 LYS LYS A . n A 1 80 LYS 80 103 103 LYS LYS A . n A 1 81 MSE 81 104 104 MSE MSE A . n A 1 82 LYS 82 105 105 LYS LYS A . n A 1 83 ILE 83 106 106 ILE ILE A . n A 1 84 THR 84 107 107 THR THR A . n A 1 85 ILE 85 108 108 ILE ILE A . n A 1 86 THR 86 109 109 THR THR A . n A 1 87 SER 87 110 110 SER SER A . n A 1 88 PRO 88 111 111 PRO PRO A . n A 1 89 THR 89 112 112 THR THR A . n A 1 90 LEU 90 113 113 LEU LEU A . n A 1 91 ASN 91 114 114 ASN ASN A . n A 1 92 GLY 92 115 115 GLY GLY A . n A 1 93 ILE 93 116 116 ILE ILE A . n A 1 94 SER 94 117 117 SER SER A . n A 1 95 PHE 95 118 118 PHE PHE A . n A 1 96 LYS 96 119 119 LYS LYS A . n A 1 97 GLY 97 120 120 GLY GLY A . n A 1 98 VAL 98 121 121 VAL VAL A . n A 1 99 GLY 99 122 122 GLY GLY A . n A 1 100 ASP 100 123 123 ASP ASP A . n A 1 101 VAL 101 124 124 VAL VAL A . n A 1 102 HIS 102 125 125 HIS HIS A . n A 1 103 ILE 103 126 126 ILE ILE A . n A 1 104 GLU 104 127 127 GLU GLU A . n A 1 105 ASN 105 128 128 ASN ASN A . n A 1 106 GLY 106 129 129 GLY GLY A . n A 1 107 LEU 107 130 130 LEU LEU A . n A 1 108 THR 108 131 131 THR THR A . n A 1 109 THR 109 132 132 THR THR A . n A 1 110 ASP 110 133 133 ASP ASP A . n A 1 111 ASN 111 134 134 ASN ASN A . n A 1 112 LEU 112 135 135 LEU LEU A . n A 1 113 ASP 113 136 136 ASP ASP A . n A 1 114 ILE 114 137 137 ILE ILE A . n A 1 115 GLU 115 138 138 GLU GLU A . n A 1 116 SER 116 139 139 SER SER A . n A 1 117 LYS 117 140 140 LYS LYS A . n A 1 118 GLY 118 141 141 GLY GLY A . n A 1 119 VAL 119 142 142 VAL VAL A . n A 1 120 GLY 120 143 143 GLY GLY A . n A 1 121 ASN 121 144 144 ASN ASN A . n A 1 122 VAL 122 145 145 VAL VAL A . n A 1 123 ASP 123 146 146 ASP ASP A . n A 1 124 ILE 124 147 147 ILE ILE A . n A 1 125 GLN 125 148 148 GLN GLN A . n A 1 126 SER 126 149 149 SER SER A . n A 1 127 LEU 127 150 150 LEU LEU A . n A 1 128 THR 128 151 151 THR THR A . n A 1 129 CYS 129 152 152 CYS CYS A . n A 1 130 GLN 130 153 153 GLN GLN A . n A 1 131 LYS 131 154 154 LYS LYS A . n A 1 132 LEU 132 155 155 LEU LEU A . n A 1 133 ASN 133 156 156 ASN ASN A . n A 1 134 VAL 134 157 157 VAL VAL A . n A 1 135 GLN 135 158 158 GLN GLN A . n A 1 136 SER 136 159 159 SER SER A . n A 1 137 MSE 137 160 160 MSE MSE A . n A 1 138 GLY 138 161 161 GLY GLY A . n A 1 139 VAL 139 162 162 VAL VAL A . n A 1 140 GLY 140 163 163 GLY GLY A . n A 1 141 ASP 141 164 164 ASP ASP A . n A 1 142 VAL 142 165 165 VAL VAL A . n A 1 143 LYS 143 166 166 LYS LYS A . n A 1 144 LEU 144 167 167 LEU LEU A . n A 1 145 GLU 145 168 168 GLU GLU A . n A 1 146 GLY 146 169 169 GLY GLY A . n A 1 147 THR 147 170 170 THR THR A . n A 1 148 ALA 148 171 171 ALA ALA A . n A 1 149 GLN 149 172 172 GLN GLN A . n A 1 150 ILE 150 173 173 ILE ILE A . n A 1 151 ALA 151 174 174 ALA ALA A . n A 1 152 ALA 152 175 175 ALA ALA A . n A 1 153 LEU 153 176 176 LEU LEU A . n A 1 154 HIS 154 177 177 HIS HIS A . n A 1 155 SER 155 178 178 SER SER A . n A 1 156 LYS 156 179 179 LYS LYS A . n A 1 157 GLY 157 180 180 GLY GLY A . n A 1 158 VAL 158 181 181 VAL VAL A . n A 1 159 GLY 159 182 182 GLY GLY A . n A 1 160 ASN 160 183 183 ASN ASN A . n A 1 161 ILE 161 184 184 ILE ILE A . n A 1 162 GLU 162 185 185 GLU GLU A . n A 1 163 ALA 163 186 186 ALA ALA A . n A 1 164 GLY 164 187 187 GLY GLY A . n A 1 165 ASN 165 188 188 ASN ASN A . n A 1 166 LEU 166 189 189 LEU LEU A . n A 1 167 ARG 167 190 190 ARG ARG A . n A 1 168 ALA 168 191 191 ALA ALA A . n A 1 169 ASN 169 192 192 ASN ASN A . n A 1 170 ALA 170 193 193 ALA ALA A . n A 1 171 VAL 171 194 194 VAL VAL A . n A 1 172 GLU 172 195 195 GLU GLU A . n A 1 173 ALA 173 196 196 ALA ALA A . n A 1 174 SER 174 197 197 SER SER A . n A 1 175 SER 175 198 198 SER SER A . n A 1 176 GLN 176 199 199 GLN GLN A . n A 1 177 GLY 177 200 200 GLY GLY A . n A 1 178 VAL 178 201 201 VAL VAL A . n A 1 179 GLY 179 202 202 GLY GLY A . n A 1 180 ASP 180 203 203 ASP ASP A . n A 1 181 ILE 181 204 204 ILE ILE A . n A 1 182 THR 182 205 205 THR THR A . n A 1 183 CYS 183 206 206 CYS CYS A . n A 1 184 ASN 184 207 207 ASN ASN A . n A 1 185 ALA 185 208 208 ALA ALA A . n A 1 186 THR 186 209 209 THR THR A . n A 1 187 GLU 187 210 210 GLU GLU A . n A 1 188 SER 188 211 211 SER SER A . n A 1 189 ILE 189 212 212 ILE ILE A . n A 1 190 ASP 190 213 213 ASP ASP A . n A 1 191 ALA 191 214 214 ALA ALA A . n A 1 192 ALA 192 215 215 ALA ALA A . n A 1 193 VAL 193 216 216 VAL VAL A . n A 1 194 ARG 194 217 217 ARG ARG A . n A 1 195 GLY 195 218 218 GLY GLY A . n A 1 196 VAL 196 219 219 VAL VAL A . n A 1 197 GLY 197 220 220 GLY GLY A . n A 1 198 SER 198 221 221 SER SER A . n A 1 199 ILE 199 222 222 ILE ILE A . n A 1 200 LYS 200 223 223 LYS LYS A . n A 1 201 TYR 201 224 224 TYR TYR A . n A 1 202 LYS 202 225 225 LYS LYS A . n A 1 203 GLY 203 226 226 GLY GLY A . n A 1 204 SER 204 227 227 SER SER A . n A 1 205 PRO 205 228 228 PRO PRO A . n A 1 206 THR 206 229 229 THR THR A . n A 1 207 ILE 207 230 230 ILE ILE A . n A 1 208 LYS 208 231 231 LYS LYS A . n A 1 209 SER 209 232 232 SER SER A . n A 1 210 LEU 210 233 233 LEU LEU A . n A 1 211 SER 211 234 234 SER SER A . n A 1 212 LYS 212 235 235 LYS LYS A . n A 1 213 LYS 213 236 236 LYS LYS A . n A 1 214 GLY 214 237 237 GLY GLY A . n A 1 215 VAL 215 238 238 VAL VAL A . n A 1 216 GLY 216 239 239 GLY GLY A . n A 1 217 THR 217 240 240 THR THR A . n A 1 218 ILE 218 241 241 ILE ILE A . n A 1 219 LYS 219 242 242 LYS LYS A . n A 1 220 ASN 220 243 243 ASN ASN A . n A 1 221 ILE 221 244 244 ILE ILE A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 GLY 2 25 ? ? ? B . n B 1 3 GLU 3 26 ? ? ? B . n B 1 4 GLY 4 27 27 GLY GLY B . n B 1 5 ILE 5 28 28 ILE ILE B . n B 1 6 GLN 6 29 29 GLN GLN B . n B 1 7 PRO 7 30 30 PRO PRO B . n B 1 8 SER 8 31 31 SER SER B . n B 1 9 LYS 9 32 32 LYS LYS B . n B 1 10 LYS 10 33 33 LYS LYS B . n B 1 11 LEU 11 34 34 LEU LEU B . n B 1 12 ILE 12 35 35 ILE ILE B . n B 1 13 THR 13 36 36 THR THR B . n B 1 14 ARG 14 37 37 ARG ARG B . n B 1 15 ASP 15 38 38 ASP ASP B . n B 1 16 TYR 16 39 39 TYR TYR B . n B 1 17 LYS 17 40 40 LYS LYS B . n B 1 18 VAL 18 41 41 VAL VAL B . n B 1 19 LYS 19 42 42 LYS LYS B . n B 1 20 GLU 20 43 43 GLU GLU B . n B 1 21 PHE 21 44 44 PHE PHE B . n B 1 22 ASN 22 45 45 ASN ASN B . n B 1 23 LYS 23 46 46 LYS LYS B . n B 1 24 ILE 24 47 47 ILE ILE B . n B 1 25 ASP 25 48 48 ASP ASP B . n B 1 26 ALA 26 49 49 ALA ALA B . n B 1 27 GLY 27 50 50 GLY GLY B . n B 1 28 THR 28 51 51 THR THR B . n B 1 29 VAL 29 52 52 VAL VAL B . n B 1 30 GLY 30 53 53 GLY GLY B . n B 1 31 ASN 31 54 54 ASN ASN B . n B 1 32 ILE 32 55 55 ILE ILE B . n B 1 33 TYR 33 56 56 TYR TYR B . n B 1 34 TYR 34 57 57 TYR TYR B . n B 1 35 THR 35 58 58 THR THR B . n B 1 36 GLN 36 59 59 GLN GLN B . n B 1 37 SER 37 60 60 SER SER B . n B 1 38 THR 38 61 61 THR THR B . n B 1 39 ASP 39 62 62 ASP ASP B . n B 1 40 GLY 40 63 63 GLY GLY B . n B 1 41 LYS 41 64 64 LYS LYS B . n B 1 42 THR 42 65 65 THR THR B . n B 1 43 ASP 43 66 66 ASP ASP B . n B 1 44 LEU 44 67 67 LEU LEU B . n B 1 45 GLN 45 68 68 GLN GLN B . n B 1 46 ILE 46 69 69 ILE ILE B . n B 1 47 TYR 47 70 70 TYR TYR B . n B 1 48 GLY 48 71 71 GLY GLY B . n B 1 49 PRO 49 72 72 PRO PRO B . n B 1 50 ASP 50 73 73 ASP ASP B . n B 1 51 ASN 51 74 74 ASN ASN B . n B 1 52 ILE 52 75 75 ILE ILE B . n B 1 53 VAL 53 76 76 VAL VAL B . n B 1 54 ALA 54 77 77 ALA ALA B . n B 1 55 LEU 55 78 78 LEU LEU B . n B 1 56 ILE 56 79 79 ILE ILE B . n B 1 57 GLN 57 80 80 GLN GLN B . n B 1 58 VAL 58 81 81 VAL VAL B . n B 1 59 ALA 59 82 82 ALA ALA B . n B 1 60 VAL 60 83 83 VAL VAL B . n B 1 61 LYS 61 84 84 LYS LYS B . n B 1 62 ASP 62 85 85 ASP ASP B . n B 1 63 ASN 63 86 86 ASN ASN B . n B 1 64 THR 64 87 87 THR THR B . n B 1 65 LEU 65 88 88 LEU LEU B . n B 1 66 PHE 66 89 89 PHE PHE B . n B 1 67 LEU 67 90 90 LEU LEU B . n B 1 68 SER 68 91 91 SER SER B . n B 1 69 ILE 69 92 92 ILE ILE B . n B 1 70 ASP 70 93 93 ASP ASP B . n B 1 71 LYS 71 94 94 LYS LYS B . n B 1 72 SER 72 95 95 SER SER B . n B 1 73 LYS 73 96 96 LYS LYS B . n B 1 74 LYS 74 97 97 LYS LYS B . n B 1 75 VAL 75 98 98 VAL VAL B . n B 1 76 ARG 76 99 99 ARG ARG B . n B 1 77 ASN 77 100 100 ASN ASN B . n B 1 78 PHE 78 101 101 PHE PHE B . n B 1 79 LYS 79 102 102 LYS LYS B . n B 1 80 LYS 80 103 103 LYS LYS B . n B 1 81 MSE 81 104 104 MSE MSE B . n B 1 82 LYS 82 105 105 LYS LYS B . n B 1 83 ILE 83 106 106 ILE ILE B . n B 1 84 THR 84 107 107 THR THR B . n B 1 85 ILE 85 108 108 ILE ILE B . n B 1 86 THR 86 109 109 THR THR B . n B 1 87 SER 87 110 110 SER SER B . n B 1 88 PRO 88 111 111 PRO PRO B . n B 1 89 THR 89 112 112 THR THR B . n B 1 90 LEU 90 113 113 LEU LEU B . n B 1 91 ASN 91 114 114 ASN ASN B . n B 1 92 GLY 92 115 115 GLY GLY B . n B 1 93 ILE 93 116 116 ILE ILE B . n B 1 94 SER 94 117 117 SER SER B . n B 1 95 PHE 95 118 118 PHE PHE B . n B 1 96 LYS 96 119 119 LYS LYS B . n B 1 97 GLY 97 120 120 GLY GLY B . n B 1 98 VAL 98 121 121 VAL VAL B . n B 1 99 GLY 99 122 122 GLY GLY B . n B 1 100 ASP 100 123 123 ASP ASP B . n B 1 101 VAL 101 124 124 VAL VAL B . n B 1 102 HIS 102 125 125 HIS HIS B . n B 1 103 ILE 103 126 126 ILE ILE B . n B 1 104 GLU 104 127 127 GLU GLU B . n B 1 105 ASN 105 128 128 ASN ASN B . n B 1 106 GLY 106 129 129 GLY GLY B . n B 1 107 LEU 107 130 130 LEU LEU B . n B 1 108 THR 108 131 131 THR THR B . n B 1 109 THR 109 132 132 THR THR B . n B 1 110 ASP 110 133 133 ASP ASP B . n B 1 111 ASN 111 134 134 ASN ASN B . n B 1 112 LEU 112 135 135 LEU LEU B . n B 1 113 ASP 113 136 136 ASP ASP B . n B 1 114 ILE 114 137 137 ILE ILE B . n B 1 115 GLU 115 138 138 GLU GLU B . n B 1 116 SER 116 139 139 SER SER B . n B 1 117 LYS 117 140 140 LYS LYS B . n B 1 118 GLY 118 141 141 GLY GLY B . n B 1 119 VAL 119 142 142 VAL VAL B . n B 1 120 GLY 120 143 143 GLY GLY B . n B 1 121 ASN 121 144 144 ASN ASN B . n B 1 122 VAL 122 145 145 VAL VAL B . n B 1 123 ASP 123 146 146 ASP ASP B . n B 1 124 ILE 124 147 147 ILE ILE B . n B 1 125 GLN 125 148 148 GLN GLN B . n B 1 126 SER 126 149 149 SER SER B . n B 1 127 LEU 127 150 150 LEU LEU B . n B 1 128 THR 128 151 151 THR THR B . n B 1 129 CYS 129 152 152 CYS CYS B . n B 1 130 GLN 130 153 153 GLN GLN B . n B 1 131 LYS 131 154 154 LYS LYS B . n B 1 132 LEU 132 155 155 LEU LEU B . n B 1 133 ASN 133 156 156 ASN ASN B . n B 1 134 VAL 134 157 157 VAL VAL B . n B 1 135 GLN 135 158 158 GLN GLN B . n B 1 136 SER 136 159 159 SER SER B . n B 1 137 MSE 137 160 160 MSE MSE B . n B 1 138 GLY 138 161 161 GLY GLY B . n B 1 139 VAL 139 162 162 VAL VAL B . n B 1 140 GLY 140 163 163 GLY GLY B . n B 1 141 ASP 141 164 164 ASP ASP B . n B 1 142 VAL 142 165 165 VAL VAL B . n B 1 143 LYS 143 166 166 LYS LYS B . n B 1 144 LEU 144 167 167 LEU LEU B . n B 1 145 GLU 145 168 168 GLU GLU B . n B 1 146 GLY 146 169 169 GLY GLY B . n B 1 147 THR 147 170 170 THR THR B . n B 1 148 ALA 148 171 171 ALA ALA B . n B 1 149 GLN 149 172 172 GLN GLN B . n B 1 150 ILE 150 173 173 ILE ILE B . n B 1 151 ALA 151 174 174 ALA ALA B . n B 1 152 ALA 152 175 175 ALA ALA B . n B 1 153 LEU 153 176 176 LEU LEU B . n B 1 154 HIS 154 177 177 HIS HIS B . n B 1 155 SER 155 178 178 SER SER B . n B 1 156 LYS 156 179 179 LYS LYS B . n B 1 157 GLY 157 180 180 GLY GLY B . n B 1 158 VAL 158 181 181 VAL VAL B . n B 1 159 GLY 159 182 182 GLY GLY B . n B 1 160 ASN 160 183 183 ASN ASN B . n B 1 161 ILE 161 184 184 ILE ILE B . n B 1 162 GLU 162 185 185 GLU GLU B . n B 1 163 ALA 163 186 186 ALA ALA B . n B 1 164 GLY 164 187 187 GLY GLY B . n B 1 165 ASN 165 188 188 ASN ASN B . n B 1 166 LEU 166 189 189 LEU LEU B . n B 1 167 ARG 167 190 190 ARG ARG B . n B 1 168 ALA 168 191 191 ALA ALA B . n B 1 169 ASN 169 192 192 ASN ASN B . n B 1 170 ALA 170 193 193 ALA ALA B . n B 1 171 VAL 171 194 194 VAL VAL B . n B 1 172 GLU 172 195 195 GLU GLU B . n B 1 173 ALA 173 196 196 ALA ALA B . n B 1 174 SER 174 197 197 SER SER B . n B 1 175 SER 175 198 198 SER SER B . n B 1 176 GLN 176 199 199 GLN GLN B . n B 1 177 GLY 177 200 200 GLY GLY B . n B 1 178 VAL 178 201 201 VAL VAL B . n B 1 179 GLY 179 202 202 GLY GLY B . n B 1 180 ASP 180 203 203 ASP ASP B . n B 1 181 ILE 181 204 204 ILE ILE B . n B 1 182 THR 182 205 205 THR THR B . n B 1 183 CYS 183 206 206 CYS CYS B . n B 1 184 ASN 184 207 207 ASN ASN B . n B 1 185 ALA 185 208 208 ALA ALA B . n B 1 186 THR 186 209 209 THR THR B . n B 1 187 GLU 187 210 210 GLU GLU B . n B 1 188 SER 188 211 211 SER SER B . n B 1 189 ILE 189 212 212 ILE ILE B . n B 1 190 ASP 190 213 213 ASP ASP B . n B 1 191 ALA 191 214 214 ALA ALA B . n B 1 192 ALA 192 215 215 ALA ALA B . n B 1 193 VAL 193 216 216 VAL VAL B . n B 1 194 ARG 194 217 217 ARG ARG B . n B 1 195 GLY 195 218 218 GLY GLY B . n B 1 196 VAL 196 219 219 VAL VAL B . n B 1 197 GLY 197 220 220 GLY GLY B . n B 1 198 SER 198 221 221 SER SER B . n B 1 199 ILE 199 222 222 ILE ILE B . n B 1 200 LYS 200 223 223 LYS LYS B . n B 1 201 TYR 201 224 224 TYR TYR B . n B 1 202 LYS 202 225 225 LYS LYS B . n B 1 203 GLY 203 226 226 GLY GLY B . n B 1 204 SER 204 227 227 SER SER B . n B 1 205 PRO 205 228 228 PRO PRO B . n B 1 206 THR 206 229 229 THR THR B . n B 1 207 ILE 207 230 230 ILE ILE B . n B 1 208 LYS 208 231 231 LYS LYS B . n B 1 209 SER 209 232 232 SER SER B . n B 1 210 LEU 210 233 233 LEU LEU B . n B 1 211 SER 211 234 234 SER SER B . n B 1 212 LYS 212 235 235 LYS LYS B . n B 1 213 LYS 213 236 236 LYS LYS B . n B 1 214 GLY 214 237 237 GLY GLY B . n B 1 215 VAL 215 238 238 VAL VAL B . n B 1 216 GLY 216 239 239 GLY GLY B . n B 1 217 THR 217 240 240 THR THR B . n B 1 218 ILE 218 241 241 ILE ILE B . n B 1 219 LYS 219 242 242 LYS LYS B . n B 1 220 ASN 220 243 243 ASN ASN B . n B 1 221 ILE 221 244 244 ILE ILE B . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 246 246 CL CL A . D 3 ACT 1 247 247 ACT ACT A . E 4 PG4 1 249 249 PG4 PG4 A . F 4 PG4 1 251 251 PG4 PG4 A . G 4 PG4 1 254 254 PG4 PG4 A . H 4 PG4 1 255 255 PG4 PG4 A . I 4 PG4 1 256 256 PG4 PG4 A . J 4 PG4 1 260 260 PG4 PG4 A . K 4 PG4 1 261 261 PG4 PG4 A . L 4 PG4 1 262 262 PG4 PG4 A . M 2 CL 1 245 245 CL CL B . N 3 ACT 1 248 248 ACT ACT B . O 4 PG4 1 250 250 PG4 PG4 B . P 4 PG4 1 252 252 PG4 PG4 B . Q 4 PG4 1 253 253 PG4 PG4 B . R 4 PG4 1 257 257 PG4 PG4 B . S 4 PG4 1 258 258 PG4 PG4 B . T 4 PG4 1 259 259 PG4 PG4 B . U 5 HOH 1 263 263 HOH HOH A . U 5 HOH 2 264 264 HOH HOH A . U 5 HOH 3 267 267 HOH HOH A . U 5 HOH 4 271 271 HOH HOH A . U 5 HOH 5 272 272 HOH HOH A . U 5 HOH 6 274 274 HOH HOH A . U 5 HOH 7 277 277 HOH HOH A . U 5 HOH 8 280 280 HOH HOH A . U 5 HOH 9 283 283 HOH HOH A . U 5 HOH 10 286 286 HOH HOH A . U 5 HOH 11 288 288 HOH HOH A . U 5 HOH 12 290 290 HOH HOH A . U 5 HOH 13 291 291 HOH HOH A . U 5 HOH 14 293 293 HOH HOH A . U 5 HOH 15 294 294 HOH HOH A . U 5 HOH 16 298 298 HOH HOH A . U 5 HOH 17 299 299 HOH HOH A . U 5 HOH 18 300 300 HOH HOH A . U 5 HOH 19 302 302 HOH HOH A . U 5 HOH 20 306 306 HOH HOH A . U 5 HOH 21 307 307 HOH HOH A . U 5 HOH 22 310 310 HOH HOH A . U 5 HOH 23 311 311 HOH HOH A . U 5 HOH 24 313 313 HOH HOH A . U 5 HOH 25 314 314 HOH HOH A . U 5 HOH 26 318 318 HOH HOH A . U 5 HOH 27 319 319 HOH HOH A . U 5 HOH 28 321 321 HOH HOH A . U 5 HOH 29 322 322 HOH HOH A . U 5 HOH 30 323 323 HOH HOH A . U 5 HOH 31 327 327 HOH HOH A . U 5 HOH 32 331 331 HOH HOH A . U 5 HOH 33 333 333 HOH HOH A . U 5 HOH 34 334 334 HOH HOH A . U 5 HOH 35 335 335 HOH HOH A . U 5 HOH 36 336 336 HOH HOH A . U 5 HOH 37 337 337 HOH HOH A . U 5 HOH 38 338 338 HOH HOH A . U 5 HOH 39 340 340 HOH HOH A . U 5 HOH 40 342 342 HOH HOH A . U 5 HOH 41 344 344 HOH HOH A . U 5 HOH 42 346 346 HOH HOH A . U 5 HOH 43 348 348 HOH HOH A . U 5 HOH 44 349 349 HOH HOH A . U 5 HOH 45 353 353 HOH HOH A . U 5 HOH 46 356 356 HOH HOH A . U 5 HOH 47 357 357 HOH HOH A . U 5 HOH 48 359 359 HOH HOH A . U 5 HOH 49 361 361 HOH HOH A . U 5 HOH 50 363 363 HOH HOH A . U 5 HOH 51 364 364 HOH HOH A . U 5 HOH 52 368 368 HOH HOH A . U 5 HOH 53 369 369 HOH HOH A . U 5 HOH 54 370 370 HOH HOH A . U 5 HOH 55 372 372 HOH HOH A . U 5 HOH 56 374 374 HOH HOH A . U 5 HOH 57 375 375 HOH HOH A . U 5 HOH 58 376 376 HOH HOH A . U 5 HOH 59 378 378 HOH HOH A . U 5 HOH 60 379 379 HOH HOH A . U 5 HOH 61 380 380 HOH HOH A . U 5 HOH 62 381 381 HOH HOH A . U 5 HOH 63 383 383 HOH HOH A . U 5 HOH 64 385 385 HOH HOH A . U 5 HOH 65 386 386 HOH HOH A . U 5 HOH 66 387 387 HOH HOH A . U 5 HOH 67 389 389 HOH HOH A . U 5 HOH 68 390 390 HOH HOH A . U 5 HOH 69 391 391 HOH HOH A . U 5 HOH 70 392 392 HOH HOH A . U 5 HOH 71 394 394 HOH HOH A . U 5 HOH 72 395 395 HOH HOH A . U 5 HOH 73 397 397 HOH HOH A . U 5 HOH 74 399 399 HOH HOH A . U 5 HOH 75 400 400 HOH HOH A . U 5 HOH 76 402 402 HOH HOH A . U 5 HOH 77 404 404 HOH HOH A . U 5 HOH 78 406 406 HOH HOH A . U 5 HOH 79 408 408 HOH HOH A . U 5 HOH 80 411 411 HOH HOH A . U 5 HOH 81 412 412 HOH HOH A . U 5 HOH 82 415 415 HOH HOH A . U 5 HOH 83 417 417 HOH HOH A . U 5 HOH 84 418 418 HOH HOH A . U 5 HOH 85 420 420 HOH HOH A . U 5 HOH 86 421 421 HOH HOH A . U 5 HOH 87 424 424 HOH HOH A . U 5 HOH 88 429 429 HOH HOH A . U 5 HOH 89 432 432 HOH HOH A . U 5 HOH 90 435 435 HOH HOH A . U 5 HOH 91 437 437 HOH HOH A . U 5 HOH 92 438 438 HOH HOH A . U 5 HOH 93 440 440 HOH HOH A . U 5 HOH 94 441 441 HOH HOH A . U 5 HOH 95 443 443 HOH HOH A . U 5 HOH 96 445 445 HOH HOH A . U 5 HOH 97 447 447 HOH HOH A . U 5 HOH 98 448 448 HOH HOH A . U 5 HOH 99 452 452 HOH HOH A . U 5 HOH 100 454 454 HOH HOH A . U 5 HOH 101 456 456 HOH HOH A . U 5 HOH 102 460 460 HOH HOH A . U 5 HOH 103 464 464 HOH HOH A . U 5 HOH 104 466 466 HOH HOH A . U 5 HOH 105 467 467 HOH HOH A . U 5 HOH 106 470 470 HOH HOH A . U 5 HOH 107 471 471 HOH HOH A . U 5 HOH 108 472 472 HOH HOH A . U 5 HOH 109 474 474 HOH HOH A . U 5 HOH 110 475 475 HOH HOH A . U 5 HOH 111 476 476 HOH HOH A . U 5 HOH 112 477 477 HOH HOH A . U 5 HOH 113 479 479 HOH HOH A . U 5 HOH 114 480 480 HOH HOH A . U 5 HOH 115 482 482 HOH HOH A . U 5 HOH 116 486 486 HOH HOH A . U 5 HOH 117 487 487 HOH HOH A . U 5 HOH 118 489 489 HOH HOH A . U 5 HOH 119 492 492 HOH HOH A . U 5 HOH 120 497 497 HOH HOH A . U 5 HOH 121 498 498 HOH HOH A . U 5 HOH 122 499 499 HOH HOH A . U 5 HOH 123 503 503 HOH HOH A . U 5 HOH 124 504 504 HOH HOH A . U 5 HOH 125 505 505 HOH HOH A . U 5 HOH 126 508 508 HOH HOH A . U 5 HOH 127 509 509 HOH HOH A . U 5 HOH 128 510 510 HOH HOH A . U 5 HOH 129 511 511 HOH HOH A . U 5 HOH 130 512 512 HOH HOH A . U 5 HOH 131 515 515 HOH HOH A . U 5 HOH 132 517 517 HOH HOH A . U 5 HOH 133 519 519 HOH HOH A . U 5 HOH 134 521 521 HOH HOH A . U 5 HOH 135 527 527 HOH HOH A . U 5 HOH 136 530 530 HOH HOH A . U 5 HOH 137 531 531 HOH HOH A . U 5 HOH 138 532 532 HOH HOH A . U 5 HOH 139 535 535 HOH HOH A . U 5 HOH 140 537 537 HOH HOH A . U 5 HOH 141 538 538 HOH HOH A . U 5 HOH 142 544 544 HOH HOH A . U 5 HOH 143 547 547 HOH HOH A . U 5 HOH 144 548 548 HOH HOH A . U 5 HOH 145 549 549 HOH HOH A . U 5 HOH 146 550 550 HOH HOH A . U 5 HOH 147 551 551 HOH HOH A . U 5 HOH 148 552 552 HOH HOH A . U 5 HOH 149 553 553 HOH HOH A . U 5 HOH 150 563 563 HOH HOH A . U 5 HOH 151 564 564 HOH HOH A . U 5 HOH 152 565 565 HOH HOH A . V 5 HOH 1 265 265 HOH HOH B . V 5 HOH 2 266 266 HOH HOH B . V 5 HOH 3 268 268 HOH HOH B . V 5 HOH 4 269 269 HOH HOH B . V 5 HOH 5 270 270 HOH HOH B . V 5 HOH 6 273 273 HOH HOH B . V 5 HOH 7 275 275 HOH HOH B . V 5 HOH 8 276 276 HOH HOH B . V 5 HOH 9 278 278 HOH HOH B . V 5 HOH 10 279 279 HOH HOH B . V 5 HOH 11 281 281 HOH HOH B . V 5 HOH 12 282 282 HOH HOH B . V 5 HOH 13 284 284 HOH HOH B . V 5 HOH 14 285 285 HOH HOH B . V 5 HOH 15 287 287 HOH HOH B . V 5 HOH 16 289 289 HOH HOH B . V 5 HOH 17 292 292 HOH HOH B . V 5 HOH 18 295 295 HOH HOH B . V 5 HOH 19 296 296 HOH HOH B . V 5 HOH 20 297 297 HOH HOH B . V 5 HOH 21 301 301 HOH HOH B . V 5 HOH 22 303 303 HOH HOH B . V 5 HOH 23 304 304 HOH HOH B . V 5 HOH 24 305 305 HOH HOH B . V 5 HOH 25 308 308 HOH HOH B . V 5 HOH 26 309 309 HOH HOH B . V 5 HOH 27 312 312 HOH HOH B . V 5 HOH 28 315 315 HOH HOH B . V 5 HOH 29 316 316 HOH HOH B . V 5 HOH 30 317 317 HOH HOH B . V 5 HOH 31 320 320 HOH HOH B . V 5 HOH 32 324 324 HOH HOH B . V 5 HOH 33 325 325 HOH HOH B . V 5 HOH 34 326 326 HOH HOH B . V 5 HOH 35 328 328 HOH HOH B . V 5 HOH 36 329 329 HOH HOH B . V 5 HOH 37 330 330 HOH HOH B . V 5 HOH 38 332 332 HOH HOH B . V 5 HOH 39 339 339 HOH HOH B . V 5 HOH 40 341 341 HOH HOH B . V 5 HOH 41 343 343 HOH HOH B . V 5 HOH 42 345 345 HOH HOH B . V 5 HOH 43 347 347 HOH HOH B . V 5 HOH 44 350 350 HOH HOH B . V 5 HOH 45 351 351 HOH HOH B . V 5 HOH 46 352 352 HOH HOH B . V 5 HOH 47 354 354 HOH HOH B . V 5 HOH 48 355 355 HOH HOH B . V 5 HOH 49 358 358 HOH HOH B . V 5 HOH 50 360 360 HOH HOH B . V 5 HOH 51 362 362 HOH HOH B . V 5 HOH 52 365 365 HOH HOH B . V 5 HOH 53 366 366 HOH HOH B . V 5 HOH 54 367 367 HOH HOH B . V 5 HOH 55 371 371 HOH HOH B . V 5 HOH 56 373 373 HOH HOH B . V 5 HOH 57 377 377 HOH HOH B . V 5 HOH 58 382 382 HOH HOH B . V 5 HOH 59 384 384 HOH HOH B . V 5 HOH 60 388 388 HOH HOH B . V 5 HOH 61 393 393 HOH HOH B . V 5 HOH 62 396 396 HOH HOH B . V 5 HOH 63 398 398 HOH HOH B . V 5 HOH 64 401 401 HOH HOH B . V 5 HOH 65 403 403 HOH HOH B . V 5 HOH 66 405 405 HOH HOH B . V 5 HOH 67 407 407 HOH HOH B . V 5 HOH 68 409 409 HOH HOH B . V 5 HOH 69 410 410 HOH HOH B . V 5 HOH 70 413 413 HOH HOH B . V 5 HOH 71 414 414 HOH HOH B . V 5 HOH 72 416 416 HOH HOH B . V 5 HOH 73 419 419 HOH HOH B . V 5 HOH 74 422 422 HOH HOH B . V 5 HOH 75 423 423 HOH HOH B . V 5 HOH 76 425 425 HOH HOH B . V 5 HOH 77 426 426 HOH HOH B . V 5 HOH 78 427 427 HOH HOH B . V 5 HOH 79 428 428 HOH HOH B . V 5 HOH 80 430 430 HOH HOH B . V 5 HOH 81 431 431 HOH HOH B . V 5 HOH 82 433 433 HOH HOH B . V 5 HOH 83 434 434 HOH HOH B . V 5 HOH 84 436 436 HOH HOH B . V 5 HOH 85 439 439 HOH HOH B . V 5 HOH 86 442 442 HOH HOH B . V 5 HOH 87 444 444 HOH HOH B . V 5 HOH 88 446 446 HOH HOH B . V 5 HOH 89 449 449 HOH HOH B . V 5 HOH 90 450 450 HOH HOH B . V 5 HOH 91 451 451 HOH HOH B . V 5 HOH 92 453 453 HOH HOH B . V 5 HOH 93 455 455 HOH HOH B . V 5 HOH 94 457 457 HOH HOH B . V 5 HOH 95 458 458 HOH HOH B . V 5 HOH 96 459 459 HOH HOH B . V 5 HOH 97 461 461 HOH HOH B . V 5 HOH 98 462 462 HOH HOH B . V 5 HOH 99 463 463 HOH HOH B . V 5 HOH 100 465 465 HOH HOH B . V 5 HOH 101 468 468 HOH HOH B . V 5 HOH 102 469 469 HOH HOH B . V 5 HOH 103 473 473 HOH HOH B . V 5 HOH 104 478 478 HOH HOH B . V 5 HOH 105 481 481 HOH HOH B . V 5 HOH 106 483 483 HOH HOH B . V 5 HOH 107 484 484 HOH HOH B . V 5 HOH 108 485 485 HOH HOH B . V 5 HOH 109 488 488 HOH HOH B . V 5 HOH 110 490 490 HOH HOH B . V 5 HOH 111 491 491 HOH HOH B . V 5 HOH 112 493 493 HOH HOH B . V 5 HOH 113 494 494 HOH HOH B . V 5 HOH 114 495 495 HOH HOH B . V 5 HOH 115 496 496 HOH HOH B . V 5 HOH 116 500 500 HOH HOH B . V 5 HOH 117 501 501 HOH HOH B . V 5 HOH 118 502 502 HOH HOH B . V 5 HOH 119 506 506 HOH HOH B . V 5 HOH 120 507 507 HOH HOH B . V 5 HOH 121 513 513 HOH HOH B . V 5 HOH 122 514 514 HOH HOH B . V 5 HOH 123 516 516 HOH HOH B . V 5 HOH 124 518 518 HOH HOH B . V 5 HOH 125 520 520 HOH HOH B . V 5 HOH 126 522 522 HOH HOH B . V 5 HOH 127 523 523 HOH HOH B . V 5 HOH 128 524 524 HOH HOH B . V 5 HOH 129 525 525 HOH HOH B . V 5 HOH 130 526 526 HOH HOH B . V 5 HOH 131 528 528 HOH HOH B . V 5 HOH 132 529 529 HOH HOH B . V 5 HOH 133 533 533 HOH HOH B . V 5 HOH 134 534 534 HOH HOH B . V 5 HOH 135 536 536 HOH HOH B . V 5 HOH 136 539 539 HOH HOH B . V 5 HOH 137 540 540 HOH HOH B . V 5 HOH 138 541 541 HOH HOH B . V 5 HOH 139 542 542 HOH HOH B . V 5 HOH 140 543 543 HOH HOH B . V 5 HOH 141 545 545 HOH HOH B . V 5 HOH 142 546 546 HOH HOH B . V 5 HOH 143 554 554 HOH HOH B . V 5 HOH 144 555 555 HOH HOH B . V 5 HOH 145 556 556 HOH HOH B . V 5 HOH 146 557 557 HOH HOH B . V 5 HOH 147 558 558 HOH HOH B . V 5 HOH 148 559 559 HOH HOH B . V 5 HOH 149 560 560 HOH HOH B . V 5 HOH 150 561 561 HOH HOH B . V 5 HOH 151 562 562 HOH HOH B . V 5 HOH 152 566 566 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 81 A MSE 104 ? MET SELENOMETHIONINE 2 A MSE 137 A MSE 160 ? MET SELENOMETHIONINE 3 B MSE 81 B MSE 104 ? MET SELENOMETHIONINE 4 B MSE 137 B MSE 160 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 software_defined_assembly PISA monomeric 1 3 software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 2 1 A,C,D,E,F,G,H,I,J,K,L,U 3 1 B,M,N,O,P,Q,R,S,T,V # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-07-20 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 23.5064 19.1780 67.4819 -0.0043 -0.0586 -0.0530 0.0131 -0.0090 0.0162 0.2983 0.6088 1.4290 -0.0592 -0.0283 0.1628 0.0107 -0.0184 0.0078 0.0313 0.0405 -0.0073 0.0072 -0.1140 -0.0422 'X-RAY DIFFRACTION' 2 ? refined 34.5072 -2.8880 85.7450 -0.0227 -0.0864 -0.0515 0.0026 -0.0123 0.0084 0.4301 0.5402 2.1809 -0.0566 0.1328 0.2338 -0.0277 -0.0412 0.0689 0.0134 0.0163 -0.0185 -0.0170 -0.0314 0.0285 # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.pdbx_refine_id 1 1 ? ? ? ? ? ? ? ? ? 'chain A' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'chain B' 'X-RAY DIFFRACTION' # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data processing' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 4 BUSTER-TNT 'BUSTER 2.8.0' ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 XSCALE . ? ? ? ? 'data scaling' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 autoSHARP . ? ? ? ? phasing ? ? ? 10 BUSTER 2.8.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 3PET _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (RESIDUES 25-244) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 103 ? ? 86.58 -7.59 2 1 LYS B 236 ? ? -160.54 74.53 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 33 ? CE ? A LYS 10 CE 2 1 Y 1 A LYS 33 ? NZ ? A LYS 10 NZ 3 1 Y 1 A LYS 40 ? CG ? A LYS 17 CG 4 1 Y 1 A LYS 40 ? CD ? A LYS 17 CD 5 1 Y 1 A LYS 40 ? CE ? A LYS 17 CE 6 1 Y 1 A LYS 40 ? NZ ? A LYS 17 NZ 7 1 Y 1 A ARG 99 ? CG ? A ARG 76 CG 8 1 Y 1 A ARG 99 ? CD ? A ARG 76 CD 9 1 Y 1 A ARG 99 ? NE ? A ARG 76 NE 10 1 Y 1 A ARG 99 ? CZ ? A ARG 76 CZ 11 1 Y 1 A ARG 99 ? NH1 ? A ARG 76 NH1 12 1 Y 1 A ARG 99 ? NH2 ? A ARG 76 NH2 13 1 Y 1 A LYS 235 ? CE ? A LYS 212 CE 14 1 Y 1 A LYS 235 ? NZ ? A LYS 212 NZ 15 1 Y 1 B LYS 32 ? CG ? B LYS 9 CG 16 1 Y 1 B LYS 32 ? CD ? B LYS 9 CD 17 1 Y 1 B LYS 32 ? CE ? B LYS 9 CE 18 1 Y 1 B LYS 32 ? NZ ? B LYS 9 NZ 19 1 Y 1 B LYS 40 ? CG ? B LYS 17 CG 20 1 Y 1 B LYS 40 ? CD ? B LYS 17 CD 21 1 Y 1 B LYS 40 ? CE ? B LYS 17 CE 22 1 Y 1 B LYS 40 ? NZ ? B LYS 17 NZ 23 1 Y 1 B LYS 96 ? CG ? B LYS 73 CG 24 1 Y 1 B LYS 96 ? CD ? B LYS 73 CD 25 1 Y 1 B LYS 96 ? CE ? B LYS 73 CE 26 1 Y 1 B LYS 96 ? NZ ? B LYS 73 NZ 27 1 Y 1 B LYS 97 ? CG ? B LYS 74 CG 28 1 Y 1 B LYS 97 ? CD ? B LYS 74 CD 29 1 Y 1 B LYS 97 ? CE ? B LYS 74 CE 30 1 Y 1 B LYS 97 ? NZ ? B LYS 74 NZ 31 1 Y 1 B ARG 99 ? CG ? B ARG 76 CG 32 1 Y 1 B ARG 99 ? CD ? B ARG 76 CD 33 1 Y 1 B ARG 99 ? NE ? B ARG 76 NE 34 1 Y 1 B ARG 99 ? CZ ? B ARG 76 CZ 35 1 Y 1 B ARG 99 ? NH1 ? B ARG 76 NH1 36 1 Y 1 B ARG 99 ? NH2 ? B ARG 76 NH2 37 1 N 1 A PG4 255 ? C5 ? H PG4 1 C5 38 1 N 1 A PG4 255 ? C6 ? H PG4 1 C6 39 1 N 1 A PG4 255 ? O4 ? H PG4 1 O4 40 1 N 1 A PG4 255 ? C7 ? H PG4 1 C7 41 1 N 1 A PG4 255 ? C8 ? H PG4 1 C8 42 1 N 1 A PG4 255 ? O5 ? H PG4 1 O5 43 1 N 1 A PG4 256 ? C7 ? I PG4 1 C7 44 1 N 1 A PG4 256 ? C8 ? I PG4 1 C8 45 1 N 1 A PG4 256 ? O5 ? I PG4 1 O5 46 1 N 1 A PG4 261 ? C5 ? K PG4 1 C5 47 1 N 1 A PG4 261 ? C6 ? K PG4 1 C6 48 1 N 1 A PG4 261 ? O4 ? K PG4 1 O4 49 1 N 1 A PG4 261 ? C7 ? K PG4 1 C7 50 1 N 1 A PG4 261 ? C8 ? K PG4 1 C8 51 1 N 1 A PG4 261 ? O5 ? K PG4 1 O5 52 1 N 1 A PG4 262 ? C5 ? L PG4 1 C5 53 1 N 1 A PG4 262 ? C6 ? L PG4 1 C6 54 1 N 1 A PG4 262 ? O4 ? L PG4 1 O4 55 1 N 1 A PG4 262 ? C7 ? L PG4 1 C7 56 1 N 1 A PG4 262 ? C8 ? L PG4 1 C8 57 1 N 1 A PG4 262 ? O5 ? L PG4 1 O5 58 1 N 1 B PG4 253 ? C8 ? Q PG4 1 C8 59 1 N 1 B PG4 253 ? O5 ? Q PG4 1 O5 60 1 N 1 B PG4 257 ? C7 ? R PG4 1 C7 61 1 N 1 B PG4 257 ? C8 ? R PG4 1 C8 62 1 N 1 B PG4 257 ? O5 ? R PG4 1 O5 63 1 N 1 B PG4 258 ? C5 ? S PG4 1 C5 64 1 N 1 B PG4 258 ? C6 ? S PG4 1 C6 65 1 N 1 B PG4 258 ? O4 ? S PG4 1 O4 66 1 N 1 B PG4 258 ? C7 ? S PG4 1 C7 67 1 N 1 B PG4 258 ? C8 ? S PG4 1 C8 68 1 N 1 B PG4 258 ? O5 ? S PG4 1 O5 69 1 N 1 B PG4 259 ? C3 ? T PG4 1 C3 70 1 N 1 B PG4 259 ? C4 ? T PG4 1 C4 71 1 N 1 B PG4 259 ? O3 ? T PG4 1 O3 72 1 N 1 B PG4 259 ? C5 ? T PG4 1 C5 73 1 N 1 B PG4 259 ? C6 ? T PG4 1 C6 74 1 N 1 B PG4 259 ? O4 ? T PG4 1 O4 75 1 N 1 B PG4 259 ? C7 ? T PG4 1 C7 76 1 N 1 B PG4 259 ? C8 ? T PG4 1 C8 77 1 N 1 B PG4 259 ? O5 ? T PG4 1 O5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLY 25 ? A GLY 2 3 1 Y 1 A GLU 26 ? A GLU 3 4 1 Y 1 B GLY 0 ? B GLY 1 5 1 Y 1 B GLY 25 ? B GLY 2 6 1 Y 1 B GLU 26 ? B GLU 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'ACETATE ION' ACT 4 'TETRAETHYLENE GLYCOL' PG4 5 water HOH #