data_3PFM # _entry.id 3PFM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3PFM RCSB RCSB062317 WWPDB D_1000062317 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id apc38398.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3PFM _pdbx_database_status.recvd_initial_deposition_date 2010-10-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nocek, B.' 1 'Stein, A.' 2 'Marshall, N.' 3 'Clancy, S.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title 'Crystal structure of a EAL domain of GGDEF domain protein from Pseudomonas fluorescens Pf' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Nocek, B.' 1 primary 'Stein, A.' 2 primary 'Marshall, N.' 3 primary 'Clancy, S.' 4 primary 'Joachimiak, A.' 5 # _cell.entry_id 3PFM _cell.length_a 78.657 _cell.length_b 107.861 _cell.length_c 159.046 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3PFM _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GGDEF domain protein' 28092.289 1 ? ? ? ? 2 water nat water 18.015 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNADHHAWHRLLDRALSEQHFQLYFQPVVAARDTHLVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWTSRLDLL(MSE) LEQVLRQ(MSE)ASHEDCLALNLSAATLADPHALNRVFEILRQHSDLGPRLTLEIGEEQLPEQA(MSE)LEQLTRRLREL GFSLSLQRFGGRFS(MSE)IGNLARLGLAYLKIDGSYIRDIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELQVIR E(MSE)GLYGVQGQLFGEPAPWG ; _entity_poly.pdbx_seq_one_letter_code_can ;SNADHHAWHRLLDRALSEQHFQLYFQPVVAARDTHLVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWTSRLDLLMLEQV LRQMASHEDCLALNLSAATLADPHALNRVFEILRQHSDLGPRLTLEIGEEQLPEQAMLEQLTRRLRELGFSLSLQRFGGR FSMIGNLARLGLAYLKIDGSYIRDIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELQVIREMGLYGVQGQLFGEPA PWG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier apc38398.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 ASP n 1 5 HIS n 1 6 HIS n 1 7 ALA n 1 8 TRP n 1 9 HIS n 1 10 ARG n 1 11 LEU n 1 12 LEU n 1 13 ASP n 1 14 ARG n 1 15 ALA n 1 16 LEU n 1 17 SER n 1 18 GLU n 1 19 GLN n 1 20 HIS n 1 21 PHE n 1 22 GLN n 1 23 LEU n 1 24 TYR n 1 25 PHE n 1 26 GLN n 1 27 PRO n 1 28 VAL n 1 29 VAL n 1 30 ALA n 1 31 ALA n 1 32 ARG n 1 33 ASP n 1 34 THR n 1 35 HIS n 1 36 LEU n 1 37 VAL n 1 38 LEU n 1 39 HIS n 1 40 TYR n 1 41 LYS n 1 42 VAL n 1 43 LEU n 1 44 SER n 1 45 ARG n 1 46 LEU n 1 47 LEU n 1 48 ASP n 1 49 GLU n 1 50 GLN n 1 51 GLY n 1 52 GLN n 1 53 THR n 1 54 ILE n 1 55 PRO n 1 56 ALA n 1 57 GLY n 1 58 ARG n 1 59 PHE n 1 60 LEU n 1 61 PRO n 1 62 TRP n 1 63 LEU n 1 64 GLU n 1 65 ARG n 1 66 PHE n 1 67 GLY n 1 68 TRP n 1 69 THR n 1 70 SER n 1 71 ARG n 1 72 LEU n 1 73 ASP n 1 74 LEU n 1 75 LEU n 1 76 MSE n 1 77 LEU n 1 78 GLU n 1 79 GLN n 1 80 VAL n 1 81 LEU n 1 82 ARG n 1 83 GLN n 1 84 MSE n 1 85 ALA n 1 86 SER n 1 87 HIS n 1 88 GLU n 1 89 ASP n 1 90 CYS n 1 91 LEU n 1 92 ALA n 1 93 LEU n 1 94 ASN n 1 95 LEU n 1 96 SER n 1 97 ALA n 1 98 ALA n 1 99 THR n 1 100 LEU n 1 101 ALA n 1 102 ASP n 1 103 PRO n 1 104 HIS n 1 105 ALA n 1 106 LEU n 1 107 ASN n 1 108 ARG n 1 109 VAL n 1 110 PHE n 1 111 GLU n 1 112 ILE n 1 113 LEU n 1 114 ARG n 1 115 GLN n 1 116 HIS n 1 117 SER n 1 118 ASP n 1 119 LEU n 1 120 GLY n 1 121 PRO n 1 122 ARG n 1 123 LEU n 1 124 THR n 1 125 LEU n 1 126 GLU n 1 127 ILE n 1 128 GLY n 1 129 GLU n 1 130 GLU n 1 131 GLN n 1 132 LEU n 1 133 PRO n 1 134 GLU n 1 135 GLN n 1 136 ALA n 1 137 MSE n 1 138 LEU n 1 139 GLU n 1 140 GLN n 1 141 LEU n 1 142 THR n 1 143 ARG n 1 144 ARG n 1 145 LEU n 1 146 ARG n 1 147 GLU n 1 148 LEU n 1 149 GLY n 1 150 PHE n 1 151 SER n 1 152 LEU n 1 153 SER n 1 154 LEU n 1 155 GLN n 1 156 ARG n 1 157 PHE n 1 158 GLY n 1 159 GLY n 1 160 ARG n 1 161 PHE n 1 162 SER n 1 163 MSE n 1 164 ILE n 1 165 GLY n 1 166 ASN n 1 167 LEU n 1 168 ALA n 1 169 ARG n 1 170 LEU n 1 171 GLY n 1 172 LEU n 1 173 ALA n 1 174 TYR n 1 175 LEU n 1 176 LYS n 1 177 ILE n 1 178 ASP n 1 179 GLY n 1 180 SER n 1 181 TYR n 1 182 ILE n 1 183 ARG n 1 184 ASP n 1 185 ILE n 1 186 ASP n 1 187 GLN n 1 188 GLU n 1 189 SER n 1 190 ASP n 1 191 LYS n 1 192 ARG n 1 193 LEU n 1 194 PHE n 1 195 ILE n 1 196 GLU n 1 197 ALA n 1 198 ILE n 1 199 GLN n 1 200 ARG n 1 201 ALA n 1 202 ALA n 1 203 HIS n 1 204 SER n 1 205 ILE n 1 206 ASP n 1 207 LEU n 1 208 PRO n 1 209 LEU n 1 210 ILE n 1 211 ALA n 1 212 GLU n 1 213 ARG n 1 214 VAL n 1 215 GLU n 1 216 THR n 1 217 GLU n 1 218 GLY n 1 219 GLU n 1 220 LEU n 1 221 GLN n 1 222 VAL n 1 223 ILE n 1 224 ARG n 1 225 GLU n 1 226 MSE n 1 227 GLY n 1 228 LEU n 1 229 TYR n 1 230 GLY n 1 231 VAL n 1 232 GLN n 1 233 GLY n 1 234 GLN n 1 235 LEU n 1 236 PHE n 1 237 GLY n 1 238 GLU n 1 239 PRO n 1 240 ALA n 1 241 PRO n 1 242 TRP n 1 243 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PFL_0131 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Pf-5 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas fluorescens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 220664 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21DE3 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q4KKF5_PSEF5 _struct_ref.pdbx_db_accession Q4KKF5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DHHAWHRLLDRALSEQHFQLYFQPVVAARDTHLVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWTSRLDLLMLEQVLRQ MASHEDCLALNLSAATLADPHALNRVFEILRQHSDLGPRLTLEIGEEQLPEQAMLEQLTRRLRELGFSLSLQRFGGRFSM IGNLARLGLAYLKIDGSYIRDIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELQVIREMGLYGVQGQLFGEPAPWG ; _struct_ref.pdbx_align_begin 409 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3PFM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 243 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q4KKF5 _struct_ref_seq.db_align_beg 409 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 648 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 409 _struct_ref_seq.pdbx_auth_seq_align_end 648 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3PFM SER A 1 ? UNP Q4KKF5 ? ? 'EXPRESSION TAG' 406 1 1 3PFM ASN A 2 ? UNP Q4KKF5 ? ? 'EXPRESSION TAG' 407 2 1 3PFM ALA A 3 ? UNP Q4KKF5 ? ? 'EXPRESSION TAG' 408 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3PFM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 6.00 _exptl_crystal.density_percent_sol 79.51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '3.0 M NaCL, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-06-25 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9794 # _reflns.entry_id 3PFM _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 40 _reflns.d_resolution_high 2.90 _reflns.number_obs 15097 _reflns.number_all 15103 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 37 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 3.00 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.67 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.1 _reflns_shell.pdbx_redundancy 7.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1436 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3PFM _refine.ls_number_reflns_obs 14102 _refine.ls_number_reflns_all 14805 _refine.pdbx_ls_sigma_I 2 _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40 _refine.ls_d_res_high 2.908 _refine.ls_percent_reflns_obs 92.50 _refine.ls_R_factor_obs 0.1898 _refine.ls_R_factor_all 0.195 _refine.ls_R_factor_R_work 0.1875 _refine.ls_R_factor_R_free 0.2370 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.99 _refine.ls_number_reflns_R_free 703 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 50.7549 _refine.aniso_B[2][2] -15.0563 _refine.aniso_B[3][3] -35.6985 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.329 _refine.solvent_model_param_bsol 71.620 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.38 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1868 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 1871 _refine_hist.d_res_high 2.908 _refine_hist.d_res_low 40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 1908 'X-RAY DIFFRACTION' ? f_angle_d 1.149 ? ? 2593 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 21.623 ? ? 674 'X-RAY DIFFRACTION' ? f_chiral_restr 0.072 ? ? 296 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 336 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.9082 3.1326 2226 0.3135 79.00 0.3826 . . 119 . . . . 'X-RAY DIFFRACTION' . 3.1326 3.4478 2595 0.2398 91.00 0.2839 . . 155 . . . . 'X-RAY DIFFRACTION' . 3.4478 3.9464 2739 0.1738 96.00 0.2462 . . 142 . . . . 'X-RAY DIFFRACTION' . 3.9464 4.9710 2859 0.1442 98.00 0.1812 . . 154 . . . . 'X-RAY DIFFRACTION' . 4.9710 43.9669 2980 0.1828 98.00 0.2244 . . 133 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3PFM _struct.title 'Crystal structure of a EAL domain of GGDEF domain protein from Pseudomonas fluorescens Pf' _struct.pdbx_descriptor 'GGDEF domain protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PFM _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;PSI2, MCSG, Structural Genomics, Protein Structure Initiative, Midwest Center for Structural Genomics, EAL domain, SIGNALING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 1 ? GLN A 19 ? SER A 406 GLN A 424 1 ? 19 HELX_P HELX_P2 2 PRO A 55 ? GLY A 67 ? PRO A 460 GLY A 472 1 ? 13 HELX_P HELX_P3 3 TRP A 68 ? MSE A 84 ? TRP A 473 MSE A 489 1 ? 17 HELX_P HELX_P4 4 ALA A 85 ? HIS A 87 ? ALA A 490 HIS A 492 5 ? 3 HELX_P HELX_P5 5 SER A 96 ? ASP A 102 ? SER A 501 ASP A 507 1 ? 7 HELX_P HELX_P6 6 ASP A 102 ? HIS A 116 ? ASP A 507 HIS A 521 1 ? 15 HELX_P HELX_P7 7 SER A 117 ? GLY A 120 ? SER A 522 GLY A 525 5 ? 4 HELX_P HELX_P8 8 GLU A 134 ? GLY A 149 ? GLU A 539 GLY A 554 1 ? 16 HELX_P HELX_P9 9 ARG A 160 ? GLY A 165 ? ARG A 565 GLY A 570 5 ? 6 HELX_P HELX_P10 10 ASN A 166 ? GLY A 171 ? ASN A 571 GLY A 576 1 ? 6 HELX_P HELX_P11 11 GLY A 179 ? ARG A 183 ? GLY A 584 ARG A 588 5 ? 5 HELX_P HELX_P12 12 SER A 189 ? ILE A 205 ? SER A 594 ILE A 610 1 ? 17 HELX_P HELX_P13 13 THR A 216 ? GLY A 227 ? THR A 621 GLY A 632 1 ? 12 HELX_P HELX_P14 14 GLY A 233 ? GLY A 237 ? GLY A 638 GLY A 642 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LEU 75 C ? ? ? 1_555 A MSE 76 N ? ? A LEU 480 A MSE 481 1_555 ? ? ? ? ? ? ? 1.312 ? covale2 covale ? ? A MSE 76 C ? ? ? 1_555 A LEU 77 N ? ? A MSE 481 A LEU 482 1_555 ? ? ? ? ? ? ? 1.314 ? covale3 covale ? ? A GLN 83 C ? ? ? 1_555 A MSE 84 N ? ? A GLN 488 A MSE 489 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale ? ? A MSE 84 C ? ? ? 1_555 A ALA 85 N ? ? A MSE 489 A ALA 490 1_555 ? ? ? ? ? ? ? 1.323 ? covale5 covale ? ? A ALA 136 C ? ? ? 1_555 A MSE 137 N ? ? A ALA 541 A MSE 542 1_555 ? ? ? ? ? ? ? 1.331 ? covale6 covale ? ? A MSE 137 C ? ? ? 1_555 A LEU 138 N ? ? A MSE 542 A LEU 543 1_555 ? ? ? ? ? ? ? 1.324 ? covale7 covale ? ? A SER 162 C ? ? ? 1_555 A MSE 163 N ? ? A SER 567 A MSE 568 1_555 ? ? ? ? ? ? ? 1.327 ? covale8 covale ? ? A MSE 163 C ? ? ? 1_555 A ILE 164 N ? ? A MSE 568 A ILE 569 1_555 ? ? ? ? ? ? ? 1.325 ? covale9 covale ? ? A GLU 225 C ? ? ? 1_555 A MSE 226 N ? ? A GLU 630 A MSE 631 1_555 ? ? ? ? ? ? ? 1.331 ? covale10 covale ? ? A MSE 226 C ? ? ? 1_555 A GLY 227 N ? ? A MSE 631 A GLY 632 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 53 ? ILE A 54 ? THR A 458 ILE A 459 A 2 VAL A 37 ? LEU A 47 ? VAL A 442 LEU A 452 A 3 LEU A 91 ? LEU A 95 ? LEU A 496 LEU A 500 A 4 LEU A 123 ? GLY A 128 ? LEU A 528 GLY A 533 A 5 SER A 151 ? PHE A 157 ? SER A 556 PHE A 562 A 6 TYR A 174 ? ILE A 177 ? TYR A 579 ILE A 582 A 7 LEU A 209 ? ALA A 211 ? LEU A 614 ALA A 616 A 8 GLY A 230 ? VAL A 231 ? GLY A 635 VAL A 636 A 9 PHE A 21 ? ALA A 30 ? PHE A 426 ALA A 435 A 10 VAL A 37 ? LEU A 47 ? VAL A 442 LEU A 452 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 54 ? O ILE A 459 N LEU A 46 ? N LEU A 451 A 2 3 N VAL A 42 ? N VAL A 447 O ALA A 92 ? O ALA A 497 A 3 4 N LEU A 93 ? N LEU A 498 O GLU A 126 ? O GLU A 531 A 4 5 N LEU A 125 ? N LEU A 530 O SER A 151 ? O SER A 556 A 5 6 N LEU A 154 ? N LEU A 559 O LYS A 176 ? O LYS A 581 A 6 7 N ILE A 177 ? N ILE A 582 O ILE A 210 ? O ILE A 615 A 7 8 N ALA A 211 ? N ALA A 616 O GLY A 230 ? O GLY A 635 A 8 9 O VAL A 231 ? O VAL A 636 N VAL A 29 ? N VAL A 434 A 9 10 N TYR A 24 ? N TYR A 429 O LEU A 43 ? O LEU A 448 # _database_PDB_matrix.entry_id 3PFM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3PFM _atom_sites.fract_transf_matrix[1][1] 0.012713 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009271 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006287 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 406 406 SER SER A . n A 1 2 ASN 2 407 407 ASN ASN A . n A 1 3 ALA 3 408 408 ALA ALA A . n A 1 4 ASP 4 409 409 ASP ASP A . n A 1 5 HIS 5 410 410 HIS HIS A . n A 1 6 HIS 6 411 411 HIS HIS A . n A 1 7 ALA 7 412 412 ALA ALA A . n A 1 8 TRP 8 413 413 TRP TRP A . n A 1 9 HIS 9 414 414 HIS HIS A . n A 1 10 ARG 10 415 415 ARG ARG A . n A 1 11 LEU 11 416 416 LEU LEU A . n A 1 12 LEU 12 417 417 LEU LEU A . n A 1 13 ASP 13 418 418 ASP ASP A . n A 1 14 ARG 14 419 419 ARG ARG A . n A 1 15 ALA 15 420 420 ALA ALA A . n A 1 16 LEU 16 421 421 LEU LEU A . n A 1 17 SER 17 422 422 SER SER A . n A 1 18 GLU 18 423 423 GLU GLU A . n A 1 19 GLN 19 424 424 GLN GLN A . n A 1 20 HIS 20 425 425 HIS HIS A . n A 1 21 PHE 21 426 426 PHE PHE A . n A 1 22 GLN 22 427 427 GLN GLN A . n A 1 23 LEU 23 428 428 LEU LEU A . n A 1 24 TYR 24 429 429 TYR TYR A . n A 1 25 PHE 25 430 430 PHE PHE A . n A 1 26 GLN 26 431 431 GLN GLN A . n A 1 27 PRO 27 432 432 PRO PRO A . n A 1 28 VAL 28 433 433 VAL VAL A . n A 1 29 VAL 29 434 434 VAL VAL A . n A 1 30 ALA 30 435 435 ALA ALA A . n A 1 31 ALA 31 436 436 ALA ALA A . n A 1 32 ARG 32 437 437 ARG ARG A . n A 1 33 ASP 33 438 438 ASP ASP A . n A 1 34 THR 34 439 439 THR THR A . n A 1 35 HIS 35 440 440 HIS HIS A . n A 1 36 LEU 36 441 441 LEU LEU A . n A 1 37 VAL 37 442 442 VAL VAL A . n A 1 38 LEU 38 443 443 LEU LEU A . n A 1 39 HIS 39 444 444 HIS HIS A . n A 1 40 TYR 40 445 445 TYR TYR A . n A 1 41 LYS 41 446 446 LYS LYS A . n A 1 42 VAL 42 447 447 VAL VAL A . n A 1 43 LEU 43 448 448 LEU LEU A . n A 1 44 SER 44 449 449 SER SER A . n A 1 45 ARG 45 450 450 ARG ARG A . n A 1 46 LEU 46 451 451 LEU LEU A . n A 1 47 LEU 47 452 452 LEU LEU A . n A 1 48 ASP 48 453 453 ASP ASP A . n A 1 49 GLU 49 454 454 GLU GLU A . n A 1 50 GLN 50 455 455 GLN GLN A . n A 1 51 GLY 51 456 456 GLY GLY A . n A 1 52 GLN 52 457 457 GLN GLN A . n A 1 53 THR 53 458 458 THR THR A . n A 1 54 ILE 54 459 459 ILE ILE A . n A 1 55 PRO 55 460 460 PRO PRO A . n A 1 56 ALA 56 461 461 ALA ALA A . n A 1 57 GLY 57 462 462 GLY GLY A . n A 1 58 ARG 58 463 463 ARG ARG A . n A 1 59 PHE 59 464 464 PHE PHE A . n A 1 60 LEU 60 465 465 LEU LEU A . n A 1 61 PRO 61 466 466 PRO PRO A . n A 1 62 TRP 62 467 467 TRP TRP A . n A 1 63 LEU 63 468 468 LEU LEU A . n A 1 64 GLU 64 469 469 GLU GLU A . n A 1 65 ARG 65 470 470 ARG ARG A . n A 1 66 PHE 66 471 471 PHE PHE A . n A 1 67 GLY 67 472 472 GLY GLY A . n A 1 68 TRP 68 473 473 TRP TRP A . n A 1 69 THR 69 474 474 THR THR A . n A 1 70 SER 70 475 475 SER SER A . n A 1 71 ARG 71 476 476 ARG ARG A . n A 1 72 LEU 72 477 477 LEU LEU A . n A 1 73 ASP 73 478 478 ASP ASP A . n A 1 74 LEU 74 479 479 LEU LEU A . n A 1 75 LEU 75 480 480 LEU LEU A . n A 1 76 MSE 76 481 481 MSE MSE A . n A 1 77 LEU 77 482 482 LEU LEU A . n A 1 78 GLU 78 483 483 GLU GLU A . n A 1 79 GLN 79 484 484 GLN GLN A . n A 1 80 VAL 80 485 485 VAL VAL A . n A 1 81 LEU 81 486 486 LEU LEU A . n A 1 82 ARG 82 487 487 ARG ARG A . n A 1 83 GLN 83 488 488 GLN GLN A . n A 1 84 MSE 84 489 489 MSE MSE A . n A 1 85 ALA 85 490 490 ALA ALA A . n A 1 86 SER 86 491 491 SER SER A . n A 1 87 HIS 87 492 492 HIS HIS A . n A 1 88 GLU 88 493 493 GLU GLU A . n A 1 89 ASP 89 494 494 ASP ASP A . n A 1 90 CYS 90 495 495 CYS CYS A . n A 1 91 LEU 91 496 496 LEU LEU A . n A 1 92 ALA 92 497 497 ALA ALA A . n A 1 93 LEU 93 498 498 LEU LEU A . n A 1 94 ASN 94 499 499 ASN ASN A . n A 1 95 LEU 95 500 500 LEU LEU A . n A 1 96 SER 96 501 501 SER SER A . n A 1 97 ALA 97 502 502 ALA ALA A . n A 1 98 ALA 98 503 503 ALA ALA A . n A 1 99 THR 99 504 504 THR THR A . n A 1 100 LEU 100 505 505 LEU LEU A . n A 1 101 ALA 101 506 506 ALA ALA A . n A 1 102 ASP 102 507 507 ASP ASP A . n A 1 103 PRO 103 508 508 PRO PRO A . n A 1 104 HIS 104 509 509 HIS HIS A . n A 1 105 ALA 105 510 510 ALA ALA A . n A 1 106 LEU 106 511 511 LEU LEU A . n A 1 107 ASN 107 512 512 ASN ASN A . n A 1 108 ARG 108 513 513 ARG ARG A . n A 1 109 VAL 109 514 514 VAL VAL A . n A 1 110 PHE 110 515 515 PHE PHE A . n A 1 111 GLU 111 516 516 GLU GLU A . n A 1 112 ILE 112 517 517 ILE ILE A . n A 1 113 LEU 113 518 518 LEU LEU A . n A 1 114 ARG 114 519 519 ARG ARG A . n A 1 115 GLN 115 520 520 GLN GLN A . n A 1 116 HIS 116 521 521 HIS HIS A . n A 1 117 SER 117 522 522 SER SER A . n A 1 118 ASP 118 523 523 ASP ASP A . n A 1 119 LEU 119 524 524 LEU LEU A . n A 1 120 GLY 120 525 525 GLY GLY A . n A 1 121 PRO 121 526 526 PRO PRO A . n A 1 122 ARG 122 527 527 ARG ARG A . n A 1 123 LEU 123 528 528 LEU LEU A . n A 1 124 THR 124 529 529 THR THR A . n A 1 125 LEU 125 530 530 LEU LEU A . n A 1 126 GLU 126 531 531 GLU GLU A . n A 1 127 ILE 127 532 532 ILE ILE A . n A 1 128 GLY 128 533 533 GLY GLY A . n A 1 129 GLU 129 534 534 GLU GLU A . n A 1 130 GLU 130 535 535 GLU GLU A . n A 1 131 GLN 131 536 536 GLN GLN A . n A 1 132 LEU 132 537 537 LEU LEU A . n A 1 133 PRO 133 538 538 PRO PRO A . n A 1 134 GLU 134 539 539 GLU GLU A . n A 1 135 GLN 135 540 540 GLN GLN A . n A 1 136 ALA 136 541 541 ALA ALA A . n A 1 137 MSE 137 542 542 MSE MSE A . n A 1 138 LEU 138 543 543 LEU LEU A . n A 1 139 GLU 139 544 544 GLU GLU A . n A 1 140 GLN 140 545 545 GLN GLN A . n A 1 141 LEU 141 546 546 LEU LEU A . n A 1 142 THR 142 547 547 THR THR A . n A 1 143 ARG 143 548 548 ARG ARG A . n A 1 144 ARG 144 549 549 ARG ARG A . n A 1 145 LEU 145 550 550 LEU LEU A . n A 1 146 ARG 146 551 551 ARG ARG A . n A 1 147 GLU 147 552 552 GLU GLU A . n A 1 148 LEU 148 553 553 LEU LEU A . n A 1 149 GLY 149 554 554 GLY GLY A . n A 1 150 PHE 150 555 555 PHE PHE A . n A 1 151 SER 151 556 556 SER SER A . n A 1 152 LEU 152 557 557 LEU LEU A . n A 1 153 SER 153 558 558 SER SER A . n A 1 154 LEU 154 559 559 LEU LEU A . n A 1 155 GLN 155 560 560 GLN GLN A . n A 1 156 ARG 156 561 561 ARG ARG A . n A 1 157 PHE 157 562 562 PHE PHE A . n A 1 158 GLY 158 563 563 GLY GLY A . n A 1 159 GLY 159 564 564 GLY GLY A . n A 1 160 ARG 160 565 565 ARG ARG A . n A 1 161 PHE 161 566 566 PHE PHE A . n A 1 162 SER 162 567 567 SER SER A . n A 1 163 MSE 163 568 568 MSE MSE A . n A 1 164 ILE 164 569 569 ILE ILE A . n A 1 165 GLY 165 570 570 GLY GLY A . n A 1 166 ASN 166 571 571 ASN ASN A . n A 1 167 LEU 167 572 572 LEU LEU A . n A 1 168 ALA 168 573 573 ALA ALA A . n A 1 169 ARG 169 574 574 ARG ARG A . n A 1 170 LEU 170 575 575 LEU LEU A . n A 1 171 GLY 171 576 576 GLY GLY A . n A 1 172 LEU 172 577 577 LEU LEU A . n A 1 173 ALA 173 578 578 ALA ALA A . n A 1 174 TYR 174 579 579 TYR TYR A . n A 1 175 LEU 175 580 580 LEU LEU A . n A 1 176 LYS 176 581 581 LYS LYS A . n A 1 177 ILE 177 582 582 ILE ILE A . n A 1 178 ASP 178 583 583 ASP ASP A . n A 1 179 GLY 179 584 584 GLY GLY A . n A 1 180 SER 180 585 585 SER SER A . n A 1 181 TYR 181 586 586 TYR TYR A . n A 1 182 ILE 182 587 587 ILE ILE A . n A 1 183 ARG 183 588 588 ARG ARG A . n A 1 184 ASP 184 589 589 ASP ASP A . n A 1 185 ILE 185 590 590 ILE ILE A . n A 1 186 ASP 186 591 591 ASP ASP A . n A 1 187 GLN 187 592 592 GLN GLN A . n A 1 188 GLU 188 593 593 GLU GLU A . n A 1 189 SER 189 594 594 SER SER A . n A 1 190 ASP 190 595 595 ASP ASP A . n A 1 191 LYS 191 596 596 LYS LYS A . n A 1 192 ARG 192 597 597 ARG ARG A . n A 1 193 LEU 193 598 598 LEU LEU A . n A 1 194 PHE 194 599 599 PHE PHE A . n A 1 195 ILE 195 600 600 ILE ILE A . n A 1 196 GLU 196 601 601 GLU GLU A . n A 1 197 ALA 197 602 602 ALA ALA A . n A 1 198 ILE 198 603 603 ILE ILE A . n A 1 199 GLN 199 604 604 GLN GLN A . n A 1 200 ARG 200 605 605 ARG ARG A . n A 1 201 ALA 201 606 606 ALA ALA A . n A 1 202 ALA 202 607 607 ALA ALA A . n A 1 203 HIS 203 608 608 HIS HIS A . n A 1 204 SER 204 609 609 SER SER A . n A 1 205 ILE 205 610 610 ILE ILE A . n A 1 206 ASP 206 611 611 ASP ASP A . n A 1 207 LEU 207 612 612 LEU LEU A . n A 1 208 PRO 208 613 613 PRO PRO A . n A 1 209 LEU 209 614 614 LEU LEU A . n A 1 210 ILE 210 615 615 ILE ILE A . n A 1 211 ALA 211 616 616 ALA ALA A . n A 1 212 GLU 212 617 617 GLU GLU A . n A 1 213 ARG 213 618 618 ARG ARG A . n A 1 214 VAL 214 619 619 VAL VAL A . n A 1 215 GLU 215 620 620 GLU GLU A . n A 1 216 THR 216 621 621 THR THR A . n A 1 217 GLU 217 622 622 GLU GLU A . n A 1 218 GLY 218 623 623 GLY GLY A . n A 1 219 GLU 219 624 624 GLU GLU A . n A 1 220 LEU 220 625 625 LEU LEU A . n A 1 221 GLN 221 626 626 GLN GLN A . n A 1 222 VAL 222 627 627 VAL VAL A . n A 1 223 ILE 223 628 628 ILE ILE A . n A 1 224 ARG 224 629 629 ARG ARG A . n A 1 225 GLU 225 630 630 GLU GLU A . n A 1 226 MSE 226 631 631 MSE MSE A . n A 1 227 GLY 227 632 632 GLY GLY A . n A 1 228 LEU 228 633 633 LEU LEU A . n A 1 229 TYR 229 634 634 TYR TYR A . n A 1 230 GLY 230 635 635 GLY GLY A . n A 1 231 VAL 231 636 636 VAL VAL A . n A 1 232 GLN 232 637 637 GLN GLN A . n A 1 233 GLY 233 638 638 GLY GLY A . n A 1 234 GLN 234 639 639 GLN GLN A . n A 1 235 LEU 235 640 640 LEU LEU A . n A 1 236 PHE 236 641 641 PHE PHE A . n A 1 237 GLY 237 642 642 GLY GLY A . n A 1 238 GLU 238 643 643 GLU GLU A . n A 1 239 PRO 239 644 644 PRO PRO A . n A 1 240 ALA 240 645 645 ALA ALA A . n A 1 241 PRO 241 646 646 PRO PRO A . n A 1 242 TRP 242 647 647 TRP TRP A . n A 1 243 GLY 243 648 648 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1 1 HOH HOH A . B 2 HOH 2 2 2 HOH HOH A . B 2 HOH 3 3 3 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 76 A MSE 481 ? MET SELENOMETHIONINE 2 A MSE 84 A MSE 489 ? MET SELENOMETHIONINE 3 A MSE 137 A MSE 542 ? MET SELENOMETHIONINE 4 A MSE 163 A MSE 568 ? MET SELENOMETHIONINE 5 A MSE 226 A MSE 631 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1180 ? 1 MORE -12 ? 1 'SSA (A^2)' 22030 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_655 -x+1,-y+1/2,z -1.0000000000 0.0000000000 0.0000000000 78.6570000000 0.0000000000 -1.0000000000 0.0000000000 53.9305000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-11-10 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 3 'Structure model' '_software.version' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 24.7596 11.0298 83.4120 1.9306 1.3820 0.6609 -0.4239 0.1217 0.0217 4.6631 4.2225 7.8552 4.3101 -2.7403 -2.5799 -2.5661 2.5192 -0.6992 0.6943 0.3083 -2.0789 1.0862 2.1511 1.4328 'X-RAY DIFFRACTION' 2 ? refined 23.6961 5.7141 78.4591 1.4961 1.3784 0.4193 0.0245 -0.1592 0.2128 2.0067 9.6516 5.3063 -0.5525 1.8607 -7.0375 -2.5289 -1.9118 -2.9873 1.1974 2.5255 -0.1189 -1.2246 0.2969 -0.3295 'X-RAY DIFFRACTION' 3 ? refined 21.6249 0.6543 66.2331 1.0712 0.9516 0.7382 -0.1459 0.0622 -0.0060 2.0430 2.7727 1.5884 -0.6737 -0.3913 -0.1063 -0.1429 -0.6363 -0.0600 1.1394 0.4501 0.4646 0.1249 -1.1407 -0.2001 'X-RAY DIFFRACTION' 4 ? refined 20.5997 12.1965 41.3306 0.4018 0.4241 0.6770 -0.2532 -0.0606 0.0623 6.7871 6.5113 9.8171 -1.3741 5.9225 -4.8997 -0.6676 -0.7507 0.0198 0.3958 0.7007 0.4663 -1.7203 -0.6422 0.5113 'X-RAY DIFFRACTION' 5 ? refined 18.4239 7.0219 53.0906 0.7897 0.8538 0.5107 0.0155 -0.0103 -0.0986 2.2764 -0.3856 1.3143 -0.5761 1.2363 -0.2346 -0.0868 -0.5455 0.2523 0.2630 0.0390 0.1888 0.5681 -1.0832 0.2636 'X-RAY DIFFRACTION' 6 ? refined 12.5680 7.8969 67.5412 1.0260 1.8519 1.1099 -0.0731 -0.0778 0.1796 3.2816 4.0108 2.2927 -2.7394 -2.5811 2.7460 1.0199 -1.3199 1.1648 0.8131 -0.8648 1.4805 1.2651 -4.1741 -0.9856 'X-RAY DIFFRACTION' 7 ? refined 28.7891 9.4586 71.0747 1.4140 1.0277 0.4936 -0.0511 0.0051 0.1208 1.5103 3.1444 0.7466 1.1949 -0.1472 0.8524 0.7562 -0.9307 0.3354 1.7307 -0.8668 -0.7137 -1.5024 -0.5134 0.1145 'X-RAY DIFFRACTION' 8 ? refined 29.5646 0.5731 64.5949 1.1614 0.8550 0.7642 0.0539 0.1662 0.1355 0.9344 0.8986 6.6143 -0.0202 2.2459 1.1169 -0.1530 0.0264 -1.4036 -0.1801 -0.6127 -0.0108 -0.1990 -0.3251 0.1855 'X-RAY DIFFRACTION' 9 ? refined 25.8486 -4.6210 55.6379 0.6269 0.7791 0.8919 0.0348 0.0918 -0.0602 5.3340 4.3808 7.6493 2.3283 5.7762 4.4892 -0.1216 -0.6924 -0.1864 -0.8213 -1.1015 0.8272 -0.6333 -0.1760 0.7868 'X-RAY DIFFRACTION' 10 ? refined 25.3333 -0.5146 50.0828 1.0997 0.6945 0.6290 0.1080 0.1948 0.0276 3.3814 5.5523 1.7855 2.3249 -0.4288 2.2661 -0.0408 -1.5370 0.5260 -1.0556 -0.9398 1.0229 -0.4154 -1.2259 0.3464 'X-RAY DIFFRACTION' 11 ? refined 36.5363 -0.0647 56.2571 0.8189 0.5561 0.5550 0.0506 -0.1518 0.1002 2.5095 0.2355 6.8248 0.1973 -0.6513 -0.8374 0.1112 0.0396 -0.4024 0.4855 0.0729 -0.5064 0.7955 -0.2871 0.0938 'X-RAY DIFFRACTION' 12 ? refined 45.2672 10.9204 55.8795 0.9945 1.3728 1.0310 -0.1127 0.3465 0.2296 8.2247 5.1859 1.7356 -0.6156 2.8470 -2.1525 1.2670 -1.5086 -2.2645 0.4503 -1.4903 -0.0980 -0.3605 0.2749 0.5324 'X-RAY DIFFRACTION' 13 ? refined 43.9808 0.0657 50.4687 0.7170 1.0000 0.9752 0.1024 0.3508 -0.0253 3.4021 7.5584 3.1643 -3.2774 0.6337 2.8590 0.3860 -1.0341 -0.6412 0.8635 0.8674 -1.1618 1.2165 2.3598 -0.4401 'X-RAY DIFFRACTION' 14 ? refined 36.0775 14.3714 50.5455 0.9085 0.6478 1.0819 0.2631 -0.0141 0.0686 0.6401 4.8458 3.0737 -1.8416 0.2846 0.3289 0.4449 -0.5674 0.2317 2.6936 -0.3957 -1.8516 -0.2858 -0.7541 -0.0234 'X-RAY DIFFRACTION' 15 ? refined 43.9351 16.8453 46.8151 0.8512 1.1912 0.8748 0.2105 0.4169 -0.0806 5.2102 9.2361 5.0680 3.3725 -2.8658 3.1267 0.8587 -0.4359 1.6512 1.8092 -2.1998 2.5238 0.8840 -0.2915 0.8977 'X-RAY DIFFRACTION' 16 ? refined 33.4909 15.7637 47.8625 0.7075 0.7954 0.7512 0.1687 0.0046 -0.0868 2.9370 2.9690 0.2297 3.0467 1.1082 1.0405 0.4208 -0.8885 -0.4058 -1.0258 -0.2018 1.2077 -0.3161 -0.7203 0.0580 'X-RAY DIFFRACTION' 17 ? refined 28.2453 28.2967 43.8568 0.9575 0.6495 0.9377 0.1577 -0.1681 -0.1333 5.3134 1.4854 5.0863 2.7166 0.8085 -0.4595 -1.1581 0.5443 1.3748 0.0660 -0.2425 0.1096 -1.6188 0.1900 0.6509 'X-RAY DIFFRACTION' 18 ? refined 38.5362 15.2698 37.2591 1.3166 0.6342 1.2466 0.2061 0.2857 0.0228 6.1614 7.0949 0.0113 -2.3648 0.3374 -0.1414 -0.9632 0.5036 -1.2739 -4.9506 -2.2758 -1.8851 -0.1674 -0.9209 2.3902 'X-RAY DIFFRACTION' 19 ? refined 22.5510 21.1945 42.9760 0.9499 0.7418 0.9057 0.1931 -0.0980 -0.0448 5.5969 4.0508 1.3111 -1.3790 -0.8445 2.3307 -0.0500 -0.0552 0.6396 -0.9821 0.1357 0.6247 -0.9975 -0.4397 0.0813 'X-RAY DIFFRACTION' 20 ? refined 17.7709 10.3689 49.1760 0.7717 0.6024 0.7706 0.0119 0.0182 -0.0550 1.4688 3.0178 0.2163 0.9638 -0.6376 -0.2339 0.3535 0.1785 0.5205 -1.7399 -0.1558 0.0708 1.2045 -0.7714 0.1964 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain A and resid 407:411)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain A and resid 412:416)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain A and resid 417:431)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(chain A and resid 432:437)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(chain A and resid 438:454)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(chain A and resid 455:460)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? '(chain A and resid 461:475)' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? '(chain A and resid 476:481)' 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? '(chain A and resid 482:489)' 'X-RAY DIFFRACTION' 10 10 ? ? ? ? ? ? ? ? ? '(chain A and resid 490:500)' 'X-RAY DIFFRACTION' 11 11 ? ? ? ? ? ? ? ? ? '(chain A and resid 501:535)' 'X-RAY DIFFRACTION' 12 12 ? ? ? ? ? ? ? ? ? '(chain A and resid 536:544)' 'X-RAY DIFFRACTION' 13 13 ? ? ? ? ? ? ? ? ? '(chain A and resid 545:554)' 'X-RAY DIFFRACTION' 14 14 ? ? ? ? ? ? ? ? ? '(chain A and resid 555:567)' 'X-RAY DIFFRACTION' 15 15 ? ? ? ? ? ? ? ? ? '(chain A and resid 568:573)' 'X-RAY DIFFRACTION' 16 16 ? ? ? ? ? ? ? ? ? '(chain A and resid 574:586)' 'X-RAY DIFFRACTION' 17 17 ? ? ? ? ? ? ? ? ? '(chain A and resid 587:607)' 'X-RAY DIFFRACTION' 18 18 ? ? ? ? ? ? ? ? ? '(chain A and resid 608:612)' 'X-RAY DIFFRACTION' 19 19 ? ? ? ? ? ? ? ? ? '(chain A and resid 613:633)' 'X-RAY DIFFRACTION' 20 20 ? ? ? ? ? ? ? ? ? '(chain A and resid 634:648)' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 Auto-Rickshaw phasing . ? 2 HKL-3000 phasing . ? 3 PHENIX refinement '(phenix.refine: 1.5_2)' ? 4 HKL-3000 'data reduction' . ? 5 HKL-3000 'data scaling' . ? 6 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ALA _pdbx_validate_rmsd_angle.auth_seq_id_1 645 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 646 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CD _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 646 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 111.75 _pdbx_validate_rmsd_angle.angle_target_value 128.40 _pdbx_validate_rmsd_angle.angle_deviation -16.65 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.10 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 424 ? ? 70.61 46.75 2 1 ASP A 478 ? ? -25.63 -51.20 3 1 LEU A 511 ? ? -41.70 -73.05 4 1 ASN A 512 ? ? -37.34 -33.92 5 1 ARG A 565 ? ? -97.97 44.30 6 1 ARG A 588 ? ? -44.69 -77.52 7 1 LEU A 640 ? ? -59.23 -9.15 8 1 PRO A 646 ? ? -44.84 169.82 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 406 ? OG ? A SER 1 OG 2 1 Y 1 A ASN 407 ? CG ? A ASN 2 CG 3 1 Y 1 A ASN 407 ? OD1 ? A ASN 2 OD1 4 1 Y 1 A ASN 407 ? ND2 ? A ASN 2 ND2 5 1 Y 1 A GLU 423 ? CG ? A GLU 18 CG 6 1 Y 1 A GLU 423 ? CD ? A GLU 18 CD 7 1 Y 1 A GLU 423 ? OE1 ? A GLU 18 OE1 8 1 Y 1 A GLU 423 ? OE2 ? A GLU 18 OE2 9 1 Y 1 A GLN 457 ? CG ? A GLN 52 CG 10 1 Y 1 A GLN 457 ? CD ? A GLN 52 CD 11 1 Y 1 A GLN 457 ? OE1 ? A GLN 52 OE1 12 1 Y 1 A GLN 457 ? NE2 ? A GLN 52 NE2 13 1 Y 1 A ARG 463 ? CG ? A ARG 58 CG 14 1 Y 1 A ARG 463 ? CD ? A ARG 58 CD 15 1 Y 1 A ARG 463 ? NE ? A ARG 58 NE 16 1 Y 1 A ARG 463 ? CZ ? A ARG 58 CZ 17 1 Y 1 A ARG 463 ? NH1 ? A ARG 58 NH1 18 1 Y 1 A ARG 463 ? NH2 ? A ARG 58 NH2 19 1 Y 1 A ARG 470 ? CG ? A ARG 65 CG 20 1 Y 1 A ARG 470 ? CD ? A ARG 65 CD 21 1 Y 1 A ARG 470 ? NE ? A ARG 65 NE 22 1 Y 1 A ARG 470 ? CZ ? A ARG 65 CZ 23 1 Y 1 A ARG 470 ? NH1 ? A ARG 65 NH1 24 1 Y 1 A ARG 470 ? NH2 ? A ARG 65 NH2 25 1 Y 1 A GLU 483 ? CG ? A GLU 78 CG 26 1 Y 1 A GLU 483 ? CD ? A GLU 78 CD 27 1 Y 1 A GLU 483 ? OE1 ? A GLU 78 OE1 28 1 Y 1 A GLU 483 ? OE2 ? A GLU 78 OE2 29 1 Y 1 A ARG 487 ? CG ? A ARG 82 CG 30 1 Y 1 A ARG 487 ? CD ? A ARG 82 CD 31 1 Y 1 A ARG 487 ? NE ? A ARG 82 NE 32 1 Y 1 A ARG 487 ? CZ ? A ARG 82 CZ 33 1 Y 1 A ARG 487 ? NH1 ? A ARG 82 NH1 34 1 Y 1 A ARG 487 ? NH2 ? A ARG 82 NH2 35 1 Y 1 A HIS 509 ? CG ? A HIS 104 CG 36 1 Y 1 A HIS 509 ? ND1 ? A HIS 104 ND1 37 1 Y 1 A HIS 509 ? CD2 ? A HIS 104 CD2 38 1 Y 1 A HIS 509 ? CE1 ? A HIS 104 CE1 39 1 Y 1 A HIS 509 ? NE2 ? A HIS 104 NE2 40 1 Y 1 A GLU 516 ? CG ? A GLU 111 CG 41 1 Y 1 A GLU 516 ? CD ? A GLU 111 CD 42 1 Y 1 A GLU 516 ? OE1 ? A GLU 111 OE1 43 1 Y 1 A GLU 516 ? OE2 ? A GLU 111 OE2 44 1 Y 1 A GLU 535 ? CG ? A GLU 130 CG 45 1 Y 1 A GLU 535 ? CD ? A GLU 130 CD 46 1 Y 1 A GLU 535 ? OE1 ? A GLU 130 OE1 47 1 Y 1 A GLU 535 ? OE2 ? A GLU 130 OE2 48 1 Y 1 A GLU 539 ? CG ? A GLU 134 CG 49 1 Y 1 A GLU 539 ? CD ? A GLU 134 CD 50 1 Y 1 A GLU 539 ? OE1 ? A GLU 134 OE1 51 1 Y 1 A GLU 539 ? OE2 ? A GLU 134 OE2 52 1 Y 1 A GLU 544 ? CG ? A GLU 139 CG 53 1 Y 1 A GLU 544 ? CD ? A GLU 139 CD 54 1 Y 1 A GLU 544 ? OE1 ? A GLU 139 OE1 55 1 Y 1 A GLU 544 ? OE2 ? A GLU 139 OE2 56 1 Y 1 A ARG 551 ? CG ? A ARG 146 CG 57 1 Y 1 A ARG 551 ? CD ? A ARG 146 CD 58 1 Y 1 A ARG 551 ? NE ? A ARG 146 NE 59 1 Y 1 A ARG 551 ? CZ ? A ARG 146 CZ 60 1 Y 1 A ARG 551 ? NH1 ? A ARG 146 NH1 61 1 Y 1 A ARG 551 ? NH2 ? A ARG 146 NH2 62 1 Y 1 A ARG 565 ? CG ? A ARG 160 CG 63 1 Y 1 A ARG 565 ? CD ? A ARG 160 CD 64 1 Y 1 A ARG 565 ? NE ? A ARG 160 NE 65 1 Y 1 A ARG 565 ? CZ ? A ARG 160 CZ 66 1 Y 1 A ARG 565 ? NH1 ? A ARG 160 NH1 67 1 Y 1 A ARG 565 ? NH2 ? A ARG 160 NH2 68 1 Y 1 A ARG 574 ? CG ? A ARG 169 CG 69 1 Y 1 A ARG 574 ? CD ? A ARG 169 CD 70 1 Y 1 A ARG 574 ? NE ? A ARG 169 NE 71 1 Y 1 A ARG 574 ? CZ ? A ARG 169 CZ 72 1 Y 1 A ARG 574 ? NH1 ? A ARG 169 NH1 73 1 Y 1 A ARG 574 ? NH2 ? A ARG 169 NH2 74 1 Y 1 A ARG 605 ? CG ? A ARG 200 CG 75 1 Y 1 A ARG 605 ? CD ? A ARG 200 CD 76 1 Y 1 A ARG 605 ? NE ? A ARG 200 NE 77 1 Y 1 A ARG 605 ? CZ ? A ARG 200 CZ 78 1 Y 1 A ARG 605 ? NH1 ? A ARG 200 NH1 79 1 Y 1 A ARG 605 ? NH2 ? A ARG 200 NH2 80 1 Y 1 A GLU 620 ? CG ? A GLU 215 CG 81 1 Y 1 A GLU 620 ? CD ? A GLU 215 CD 82 1 Y 1 A GLU 620 ? OE1 ? A GLU 215 OE1 83 1 Y 1 A GLU 620 ? OE2 ? A GLU 215 OE2 84 1 Y 1 A GLN 626 ? CG ? A GLN 221 CG 85 1 Y 1 A GLN 626 ? CD ? A GLN 221 CD 86 1 Y 1 A GLN 626 ? OE1 ? A GLN 221 OE1 87 1 Y 1 A GLN 626 ? NE2 ? A GLN 221 NE2 88 1 Y 1 A GLN 639 ? CG ? A GLN 234 CG 89 1 Y 1 A GLN 639 ? CD ? A GLN 234 CD 90 1 Y 1 A GLN 639 ? OE1 ? A GLN 234 OE1 91 1 Y 1 A GLN 639 ? NE2 ? A GLN 234 NE2 92 1 Y 1 A GLU 643 ? CG ? A GLU 238 CG 93 1 Y 1 A GLU 643 ? CD ? A GLU 238 CD 94 1 Y 1 A GLU 643 ? OE1 ? A GLU 238 OE1 95 1 Y 1 A GLU 643 ? OE2 ? A GLU 238 OE2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #