data_3PFY # _entry.id 3PFY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3PFY RCSB RCSB062329 WWPDB D_1000062329 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3PFY _pdbx_database_status.recvd_initial_deposition_date 2010-10-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Walker, J.R.' 1 'Asinas, A.E.' 2 'Crombet, L.' 3 'Dong, A.' 4 'Weigelt, J.' 5 'Bountra, C.' 6 'Arrowsmith, C.H.' 7 'Edwards, A.M.' 8 'Dhe-Paganon, S.' 9 'Structural Genomics Consortium (SGC)' 10 # _citation.id primary _citation.title 'The catalytic domain of human OTUD5' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Walker, J.R.' 1 primary 'Asinas, A.E.' 2 primary 'Crombet, L.' 3 primary 'Dong, A.' 4 primary 'Weigelt, J.' 5 primary 'Bountra, C.' 6 primary 'Arrowsmith, C.H.' 7 primary 'Edwards, A.M.' 8 primary 'Dhe-Paganon, S.' 9 primary 'Structural Genomics Consortium (SGC)' 10 # _cell.entry_id 3PFY _cell.length_a 80.605 _cell.length_b 80.605 _cell.length_c 52.263 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3PFY _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'OTU domain-containing protein 5' 22315.311 1 3.4.19.12 ? 'OTU DOMAIN (UNP Residues 172-339)' ? 2 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 2 ? ? ? ? 3 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 non-polymer syn 'UNKNOWN ATOM OR ION' ? 1 ? ? ? ? 6 water nat water 18.015 104 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Deubiquitinating enzyme A, DUBA' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)HHHHHHSSGRENLYFQGAGYNSEDEYEAAAARIEA(MSE)DPATVEQQEHWFEKALRDKKGFIIKQ(MSE)KEDG ACLFRAVADQVYGDQD(MSE)HEVVRKHC(MSE)DYL(MSE)KNADYFSNYVTEDFTTYINRKRKNNCHGNHIE(MSE)Q A(MSE)AE(MSE)YNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKA ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHSSGRENLYFQGAGYNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVY GDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQ NEDEPIRVSYHRNIHYNSVVNPNKA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 SER n 1 10 GLY n 1 11 ARG n 1 12 GLU n 1 13 ASN n 1 14 LEU n 1 15 TYR n 1 16 PHE n 1 17 GLN n 1 18 GLY n 1 19 ALA n 1 20 GLY n 1 21 TYR n 1 22 ASN n 1 23 SER n 1 24 GLU n 1 25 ASP n 1 26 GLU n 1 27 TYR n 1 28 GLU n 1 29 ALA n 1 30 ALA n 1 31 ALA n 1 32 ALA n 1 33 ARG n 1 34 ILE n 1 35 GLU n 1 36 ALA n 1 37 MSE n 1 38 ASP n 1 39 PRO n 1 40 ALA n 1 41 THR n 1 42 VAL n 1 43 GLU n 1 44 GLN n 1 45 GLN n 1 46 GLU n 1 47 HIS n 1 48 TRP n 1 49 PHE n 1 50 GLU n 1 51 LYS n 1 52 ALA n 1 53 LEU n 1 54 ARG n 1 55 ASP n 1 56 LYS n 1 57 LYS n 1 58 GLY n 1 59 PHE n 1 60 ILE n 1 61 ILE n 1 62 LYS n 1 63 GLN n 1 64 MSE n 1 65 LYS n 1 66 GLU n 1 67 ASP n 1 68 GLY n 1 69 ALA n 1 70 CYS n 1 71 LEU n 1 72 PHE n 1 73 ARG n 1 74 ALA n 1 75 VAL n 1 76 ALA n 1 77 ASP n 1 78 GLN n 1 79 VAL n 1 80 TYR n 1 81 GLY n 1 82 ASP n 1 83 GLN n 1 84 ASP n 1 85 MSE n 1 86 HIS n 1 87 GLU n 1 88 VAL n 1 89 VAL n 1 90 ARG n 1 91 LYS n 1 92 HIS n 1 93 CYS n 1 94 MSE n 1 95 ASP n 1 96 TYR n 1 97 LEU n 1 98 MSE n 1 99 LYS n 1 100 ASN n 1 101 ALA n 1 102 ASP n 1 103 TYR n 1 104 PHE n 1 105 SER n 1 106 ASN n 1 107 TYR n 1 108 VAL n 1 109 THR n 1 110 GLU n 1 111 ASP n 1 112 PHE n 1 113 THR n 1 114 THR n 1 115 TYR n 1 116 ILE n 1 117 ASN n 1 118 ARG n 1 119 LYS n 1 120 ARG n 1 121 LYS n 1 122 ASN n 1 123 ASN n 1 124 CYS n 1 125 HIS n 1 126 GLY n 1 127 ASN n 1 128 HIS n 1 129 ILE n 1 130 GLU n 1 131 MSE n 1 132 GLN n 1 133 ALA n 1 134 MSE n 1 135 ALA n 1 136 GLU n 1 137 MSE n 1 138 TYR n 1 139 ASN n 1 140 ARG n 1 141 PRO n 1 142 VAL n 1 143 GLU n 1 144 VAL n 1 145 TYR n 1 146 GLN n 1 147 TYR n 1 148 SER n 1 149 THR n 1 150 GLU n 1 151 PRO n 1 152 ILE n 1 153 ASN n 1 154 THR n 1 155 PHE n 1 156 HIS n 1 157 GLY n 1 158 ILE n 1 159 HIS n 1 160 GLN n 1 161 ASN n 1 162 GLU n 1 163 ASP n 1 164 GLU n 1 165 PRO n 1 166 ILE n 1 167 ARG n 1 168 VAL n 1 169 SER n 1 170 TYR n 1 171 HIS n 1 172 ARG n 1 173 ASN n 1 174 ILE n 1 175 HIS n 1 176 TYR n 1 177 ASN n 1 178 SER n 1 179 VAL n 1 180 VAL n 1 181 ASN n 1 182 PRO n 1 183 ASN n 1 184 LYS n 1 185 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene OTUD5 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET28-MHL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code OTUD5_HUMAN _struct_ref.pdbx_db_accession Q96G74 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GAGYNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYL MKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYN SVVNPNKA ; _struct_ref.pdbx_align_begin 172 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3PFY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 18 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 185 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q96G74 _struct_ref_seq.db_align_beg 172 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 339 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 172 _struct_ref_seq.pdbx_auth_seq_align_end 339 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3PFY MSE A 1 ? UNP Q96G74 ? ? 'EXPRESSION TAG' 155 1 1 3PFY HIS A 2 ? UNP Q96G74 ? ? 'EXPRESSION TAG' 156 2 1 3PFY HIS A 3 ? UNP Q96G74 ? ? 'EXPRESSION TAG' 157 3 1 3PFY HIS A 4 ? UNP Q96G74 ? ? 'EXPRESSION TAG' 158 4 1 3PFY HIS A 5 ? UNP Q96G74 ? ? 'EXPRESSION TAG' 159 5 1 3PFY HIS A 6 ? UNP Q96G74 ? ? 'EXPRESSION TAG' 160 6 1 3PFY HIS A 7 ? UNP Q96G74 ? ? 'EXPRESSION TAG' 161 7 1 3PFY SER A 8 ? UNP Q96G74 ? ? 'EXPRESSION TAG' 162 8 1 3PFY SER A 9 ? UNP Q96G74 ? ? 'EXPRESSION TAG' 163 9 1 3PFY GLY A 10 ? UNP Q96G74 ? ? 'EXPRESSION TAG' 164 10 1 3PFY ARG A 11 ? UNP Q96G74 ? ? 'EXPRESSION TAG' 165 11 1 3PFY GLU A 12 ? UNP Q96G74 ? ? 'EXPRESSION TAG' 166 12 1 3PFY ASN A 13 ? UNP Q96G74 ? ? 'EXPRESSION TAG' 167 13 1 3PFY LEU A 14 ? UNP Q96G74 ? ? 'EXPRESSION TAG' 168 14 1 3PFY TYR A 15 ? UNP Q96G74 ? ? 'EXPRESSION TAG' 169 15 1 3PFY PHE A 16 ? UNP Q96G74 ? ? 'EXPRESSION TAG' 170 16 1 3PFY GLN A 17 ? UNP Q96G74 ? ? 'EXPRESSION TAG' 171 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3PFY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.90 _exptl_crystal.density_percent_sol 35.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '2% PEG 400, 2 M AMMONIUM SULFATE, 0.1 M SODIUM HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2010-10-22 _diffrn_detector.details 'SI(111) DOUBLE CRYSTAL MONOCHROMETER' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL CRYO-COOLED SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97949 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97949 # _reflns.entry_id 3PFY _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 40.000 _reflns.d_resolution_high 1.700 _reflns.number_obs 19398 _reflns.number_all 19398 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.06 _reflns.pdbx_netI_over_sigmaI 65.27 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 18.70 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.73 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.199 _reflns_shell.meanI_over_sigI_obs 17.9 _reflns_shell.pdbx_redundancy 19.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 952 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3PFY _refine.ls_number_reflns_obs 18360 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.08 _refine.ls_d_res_high 1.702 _refine.ls_percent_reflns_obs 99.53 _refine.ls_R_factor_obs 0.17922 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17780 _refine.ls_R_factor_R_free 0.20750 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 983 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.950 _refine.correlation_coeff_Fo_to_Fc_free 0.937 _refine.B_iso_mean 22.262 _refine.aniso_B[1][1] 0.39 _refine.aniso_B[2][2] 0.39 _refine.aniso_B[3][3] -0.78 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS, U VALUES: WITH TLS ADDED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.094 _refine.overall_SU_ML 0.050 _refine.overall_SU_B 3.233 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.094 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1064 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 104 _refine_hist.number_atoms_total 1201 _refine_hist.d_res_high 1.702 _refine_hist.d_res_low 36.08 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.021 ? 1171 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.519 1.932 ? 1582 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.748 5.000 ? 139 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.251 24.627 ? 67 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.154 15.000 ? 192 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.019 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.115 0.200 ? 155 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.021 ? 925 'X-RAY DIFFRACTION' ? r_mcbond_it 0.903 1.500 ? 679 'X-RAY DIFFRACTION' ? r_mcangle_it 1.688 2.000 ? 1105 'X-RAY DIFFRACTION' ? r_scbond_it 3.195 3.000 ? 492 'X-RAY DIFFRACTION' ? r_scangle_it 4.826 4.500 ? 476 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.702 _refine_ls_shell.d_res_low 1.746 _refine_ls_shell.number_reflns_R_work 1342 _refine_ls_shell.R_factor_R_work 0.186 _refine_ls_shell.percent_reflns_obs 99.79 _refine_ls_shell.R_factor_R_free 0.229 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 81 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3PFY _struct.title 'The catalytic domain of human OTUD5' _struct.pdbx_descriptor 'OTU domain-containing protein 5 (E.C.3.4.19.12)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PFY _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Structural Genomics, Structural Genomics Consortium, SGC, Peptidase C65 Otubain, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 38 ? GLY A 58 ? ASP A 192 GLY A 212 1 ? 21 HELX_P HELX_P2 2 ALA A 69 ? GLY A 81 ? ALA A 223 GLY A 235 1 ? 13 HELX_P HELX_P3 3 ASP A 82 ? ASP A 84 ? ASP A 236 ASP A 238 5 ? 3 HELX_P HELX_P4 4 MSE A 85 ? ASN A 100 ? MSE A 239 ASN A 254 1 ? 16 HELX_P HELX_P5 5 ASN A 100 ? SER A 105 ? ASN A 254 SER A 259 1 ? 6 HELX_P HELX_P6 6 ASN A 127 ? ASN A 139 ? ASN A 281 ASN A 293 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 37 C ? ? ? 1_555 A ASP 38 N ? ? A MSE 191 A ASP 192 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale ? ? A GLN 63 C ? ? ? 1_555 A MSE 64 N ? ? A GLN 217 A MSE 218 1_555 ? ? ? ? ? ? ? 1.334 ? covale3 covale ? ? A MSE 64 C ? ? ? 1_555 A LYS 65 N ? ? A MSE 218 A LYS 219 1_555 ? ? ? ? ? ? ? 1.334 ? covale4 covale ? ? A ASP 84 C ? ? ? 1_555 A MSE 85 N A ? A ASP 238 A MSE 239 1_555 ? ? ? ? ? ? ? 1.335 ? covale5 covale ? ? A ASP 84 C ? ? ? 1_555 A MSE 85 N B ? A ASP 238 A MSE 239 1_555 ? ? ? ? ? ? ? 1.327 ? covale6 covale ? ? A MSE 85 C A ? ? 1_555 A HIS 86 N ? ? A MSE 239 A HIS 240 1_555 ? ? ? ? ? ? ? 1.337 ? covale7 covale ? ? A MSE 85 C B ? ? 1_555 A HIS 86 N ? ? A MSE 239 A HIS 240 1_555 ? ? ? ? ? ? ? 1.334 ? covale8 covale ? ? A CYS 93 C ? ? ? 1_555 A MSE 94 N ? ? A CYS 247 A MSE 248 1_555 ? ? ? ? ? ? ? 1.344 ? covale9 covale ? ? A MSE 94 C ? ? ? 1_555 A ASP 95 N ? ? A MSE 248 A ASP 249 1_555 ? ? ? ? ? ? ? 1.341 ? covale10 covale ? ? A LEU 97 C ? ? ? 1_555 A MSE 98 N A ? A LEU 251 A MSE 252 1_555 ? ? ? ? ? ? ? 1.334 ? covale11 covale ? ? A LEU 97 C ? ? ? 1_555 A MSE 98 N B ? A LEU 251 A MSE 252 1_555 ? ? ? ? ? ? ? 1.335 ? covale12 covale ? ? A MSE 98 C A ? ? 1_555 A LYS 99 N ? ? A MSE 252 A LYS 253 1_555 ? ? ? ? ? ? ? 1.331 ? covale13 covale ? ? A MSE 98 C B ? ? 1_555 A LYS 99 N ? ? A MSE 252 A LYS 253 1_555 ? ? ? ? ? ? ? 1.329 ? covale14 covale ? ? A GLU 130 C ? ? ? 1_555 A MSE 131 N ? ? A GLU 284 A MSE 285 1_555 ? ? ? ? ? ? ? 1.329 ? covale15 covale ? ? A MSE 131 C ? ? ? 1_555 A GLN 132 N ? ? A MSE 285 A GLN 286 1_555 ? ? ? ? ? ? ? 1.349 ? covale16 covale ? ? A ALA 133 C ? ? ? 1_555 A MSE 134 N ? ? A ALA 287 A MSE 288 1_555 ? ? ? ? ? ? ? 1.332 ? covale17 covale ? ? A MSE 134 C ? ? ? 1_555 A ALA 135 N ? ? A MSE 288 A ALA 289 1_555 ? ? ? ? ? ? ? 1.331 ? covale18 covale ? ? A GLU 136 C ? ? ? 1_555 A MSE 137 N ? ? A GLU 290 A MSE 291 1_555 ? ? ? ? ? ? ? 1.328 ? covale19 covale ? ? A MSE 137 C ? ? ? 1_555 A TYR 138 N ? ? A MSE 291 A TYR 292 1_555 ? ? ? ? ? ? ? 1.322 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 60 ? LYS A 62 ? ILE A 214 LYS A 216 A 2 HIS A 175 ? VAL A 180 ? HIS A 329 VAL A 334 A 3 ILE A 166 ? HIS A 171 ? ILE A 320 HIS A 325 A 4 VAL A 142 ? TYR A 145 ? VAL A 296 TYR A 299 A 5 ASN A 153 ? PHE A 155 ? ASN A 307 PHE A 309 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 62 ? N LYS A 216 O SER A 178 ? O SER A 332 A 2 3 O HIS A 175 ? O HIS A 329 N HIS A 171 ? N HIS A 325 A 3 4 O ILE A 166 ? O ILE A 320 N GLU A 143 ? N GLU A 297 A 4 5 N VAL A 142 ? N VAL A 296 O PHE A 155 ? O PHE A 309 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE PEG A 400' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE PEG A 401' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE PG4 A 402' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 403' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 ASP A 84 ? ASP A 238 . ? 7_556 ? 2 AC1 10 GLU A 87 ? GLU A 241 . ? 1_555 ? 3 AC1 10 GLU A 87 ? GLU A 241 . ? 7_556 ? 4 AC1 10 VAL A 88 ? VAL A 242 . ? 7_556 ? 5 AC1 10 VAL A 88 ? VAL A 242 . ? 1_555 ? 6 AC1 10 HOH G . ? HOH A 404 . ? 7_556 ? 7 AC1 10 HOH G . ? HOH A 404 . ? 1_555 ? 8 AC1 10 HOH G . ? HOH A 417 . ? 7_556 ? 9 AC1 10 HOH G . ? HOH A 460 . ? 1_555 ? 10 AC1 10 HOH G . ? HOH A 460 . ? 7_556 ? 11 AC2 7 LYS A 62 ? LYS A 216 . ? 1_555 ? 12 AC2 7 ASP A 77 ? ASP A 231 . ? 1_555 ? 13 AC2 7 GLN A 78 ? GLN A 232 . ? 1_555 ? 14 AC2 7 GLY A 81 ? GLY A 235 . ? 1_555 ? 15 AC2 7 VAL A 180 ? VAL A 334 . ? 1_555 ? 16 AC2 7 HOH G . ? HOH A 439 . ? 1_555 ? 17 AC2 7 HOH G . ? HOH A 447 . ? 1_555 ? 18 AC3 4 GLU A 43 ? GLU A 197 . ? 4_454 ? 19 AC3 4 GLN A 45 ? GLN A 199 . ? 1_555 ? 20 AC3 4 TRP A 48 ? TRP A 202 . ? 1_555 ? 21 AC3 4 TYR A 103 ? TYR A 257 . ? 7_555 ? 22 AC4 4 LYS A 65 ? LYS A 219 . ? 1_555 ? 23 AC4 4 ARG A 73 ? ARG A 227 . ? 1_555 ? 24 AC4 4 HOH G . ? HOH A 449 . ? 1_555 ? 25 AC4 4 HOH G . ? HOH A 484 . ? 3_555 ? # _database_PDB_matrix.entry_id 3PFY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3PFY _atom_sites.fract_transf_matrix[1][1] 0.012406 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012406 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019134 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE X # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 155 ? ? ? A . n A 1 2 HIS 2 156 ? ? ? A . n A 1 3 HIS 3 157 ? ? ? A . n A 1 4 HIS 4 158 ? ? ? A . n A 1 5 HIS 5 159 ? ? ? A . n A 1 6 HIS 6 160 ? ? ? A . n A 1 7 HIS 7 161 ? ? ? A . n A 1 8 SER 8 162 ? ? ? A . n A 1 9 SER 9 163 ? ? ? A . n A 1 10 GLY 10 164 ? ? ? A . n A 1 11 ARG 11 165 ? ? ? A . n A 1 12 GLU 12 166 ? ? ? A . n A 1 13 ASN 13 167 ? ? ? A . n A 1 14 LEU 14 168 ? ? ? A . n A 1 15 TYR 15 169 ? ? ? A . n A 1 16 PHE 16 170 ? ? ? A . n A 1 17 GLN 17 171 ? ? ? A . n A 1 18 GLY 18 172 ? ? ? A . n A 1 19 ALA 19 173 ? ? ? A . n A 1 20 GLY 20 174 ? ? ? A . n A 1 21 TYR 21 175 ? ? ? A . n A 1 22 ASN 22 176 ? ? ? A . n A 1 23 SER 23 177 ? ? ? A . n A 1 24 GLU 24 178 ? ? ? A . n A 1 25 ASP 25 179 ? ? ? A . n A 1 26 GLU 26 180 ? ? ? A . n A 1 27 TYR 27 181 ? ? ? A . n A 1 28 GLU 28 182 ? ? ? A . n A 1 29 ALA 29 183 ? ? ? A . n A 1 30 ALA 30 184 ? ? ? A . n A 1 31 ALA 31 185 ? ? ? A . n A 1 32 ALA 32 186 ? ? ? A . n A 1 33 ARG 33 187 ? ? ? A . n A 1 34 ILE 34 188 ? ? ? A . n A 1 35 GLU 35 189 ? ? ? A . n A 1 36 ALA 36 190 ? ? ? A . n A 1 37 MSE 37 191 191 MSE MSE A . n A 1 38 ASP 38 192 192 ASP ASP A . n A 1 39 PRO 39 193 193 PRO PRO A . n A 1 40 ALA 40 194 194 ALA ALA A . n A 1 41 THR 41 195 195 THR THR A . n A 1 42 VAL 42 196 196 VAL VAL A . n A 1 43 GLU 43 197 197 GLU GLU A . n A 1 44 GLN 44 198 198 GLN GLN A . n A 1 45 GLN 45 199 199 GLN GLN A . n A 1 46 GLU 46 200 200 GLU GLU A . n A 1 47 HIS 47 201 201 HIS HIS A . n A 1 48 TRP 48 202 202 TRP TRP A . n A 1 49 PHE 49 203 203 PHE PHE A . n A 1 50 GLU 50 204 204 GLU GLU A . n A 1 51 LYS 51 205 205 LYS LYS A . n A 1 52 ALA 52 206 206 ALA ALA A . n A 1 53 LEU 53 207 207 LEU LEU A . n A 1 54 ARG 54 208 208 ARG ARG A . n A 1 55 ASP 55 209 209 ASP ASP A . n A 1 56 LYS 56 210 210 LYS LYS A . n A 1 57 LYS 57 211 211 LYS LYS A . n A 1 58 GLY 58 212 212 GLY GLY A . n A 1 59 PHE 59 213 213 PHE PHE A . n A 1 60 ILE 60 214 214 ILE ILE A . n A 1 61 ILE 61 215 215 ILE ILE A . n A 1 62 LYS 62 216 216 LYS LYS A . n A 1 63 GLN 63 217 217 GLN GLN A . n A 1 64 MSE 64 218 218 MSE MSE A . n A 1 65 LYS 65 219 219 LYS LYS A . n A 1 66 GLU 66 220 220 GLU GLU A . n A 1 67 ASP 67 221 221 ASP ASP A . n A 1 68 GLY 68 222 222 GLY GLY A . n A 1 69 ALA 69 223 223 ALA ALA A . n A 1 70 CYS 70 224 224 CYS CYS A . n A 1 71 LEU 71 225 225 LEU LEU A . n A 1 72 PHE 72 226 226 PHE PHE A . n A 1 73 ARG 73 227 227 ARG ARG A . n A 1 74 ALA 74 228 228 ALA ALA A . n A 1 75 VAL 75 229 229 VAL VAL A . n A 1 76 ALA 76 230 230 ALA ALA A . n A 1 77 ASP 77 231 231 ASP ASP A . n A 1 78 GLN 78 232 232 GLN GLN A . n A 1 79 VAL 79 233 233 VAL VAL A . n A 1 80 TYR 80 234 234 TYR TYR A . n A 1 81 GLY 81 235 235 GLY GLY A . n A 1 82 ASP 82 236 236 ASP ASP A . n A 1 83 GLN 83 237 237 GLN GLN A . n A 1 84 ASP 84 238 238 ASP ASP A . n A 1 85 MSE 85 239 239 MSE MSE A . n A 1 86 HIS 86 240 240 HIS HIS A . n A 1 87 GLU 87 241 241 GLU GLU A . n A 1 88 VAL 88 242 242 VAL VAL A . n A 1 89 VAL 89 243 243 VAL VAL A . n A 1 90 ARG 90 244 244 ARG ARG A . n A 1 91 LYS 91 245 245 LYS LYS A . n A 1 92 HIS 92 246 246 HIS HIS A . n A 1 93 CYS 93 247 247 CYS CYS A . n A 1 94 MSE 94 248 248 MSE MSE A . n A 1 95 ASP 95 249 249 ASP ASP A . n A 1 96 TYR 96 250 250 TYR TYR A . n A 1 97 LEU 97 251 251 LEU LEU A . n A 1 98 MSE 98 252 252 MSE MSE A . n A 1 99 LYS 99 253 253 LYS LYS A . n A 1 100 ASN 100 254 254 ASN ASN A . n A 1 101 ALA 101 255 255 ALA ALA A . n A 1 102 ASP 102 256 256 ASP ASP A . n A 1 103 TYR 103 257 257 TYR TYR A . n A 1 104 PHE 104 258 258 PHE PHE A . n A 1 105 SER 105 259 259 SER SER A . n A 1 106 ASN 106 260 260 ASN ASN A . n A 1 107 TYR 107 261 261 TYR TYR A . n A 1 108 VAL 108 262 262 VAL VAL A . n A 1 109 THR 109 263 ? ? ? A . n A 1 110 GLU 110 264 ? ? ? A . n A 1 111 ASP 111 265 ? ? ? A . n A 1 112 PHE 112 266 ? ? ? A . n A 1 113 THR 113 267 ? ? ? A . n A 1 114 THR 114 268 ? ? ? A . n A 1 115 TYR 115 269 ? ? ? A . n A 1 116 ILE 116 270 ? ? ? A . n A 1 117 ASN 117 271 ? ? ? A . n A 1 118 ARG 118 272 ? ? ? A . n A 1 119 LYS 119 273 ? ? ? A . n A 1 120 ARG 120 274 ? ? ? A . n A 1 121 LYS 121 275 ? ? ? A . n A 1 122 ASN 122 276 ? ? ? A . n A 1 123 ASN 123 277 ? ? ? A . n A 1 124 CYS 124 278 ? ? ? A . n A 1 125 HIS 125 279 ? ? ? A . n A 1 126 GLY 126 280 280 GLY GLY A . n A 1 127 ASN 127 281 281 ASN ASN A . n A 1 128 HIS 128 282 282 HIS HIS A . n A 1 129 ILE 129 283 283 ILE ILE A . n A 1 130 GLU 130 284 284 GLU GLU A . n A 1 131 MSE 131 285 285 MSE MSE A . n A 1 132 GLN 132 286 286 GLN GLN A . n A 1 133 ALA 133 287 287 ALA ALA A . n A 1 134 MSE 134 288 288 MSE MSE A . n A 1 135 ALA 135 289 289 ALA ALA A . n A 1 136 GLU 136 290 290 GLU GLU A . n A 1 137 MSE 137 291 291 MSE MSE A . n A 1 138 TYR 138 292 292 TYR TYR A . n A 1 139 ASN 139 293 293 ASN ASN A . n A 1 140 ARG 140 294 294 ARG ARG A . n A 1 141 PRO 141 295 295 PRO PRO A . n A 1 142 VAL 142 296 296 VAL VAL A . n A 1 143 GLU 143 297 297 GLU GLU A . n A 1 144 VAL 144 298 298 VAL VAL A . n A 1 145 TYR 145 299 299 TYR TYR A . n A 1 146 GLN 146 300 300 GLN GLN A . n A 1 147 TYR 147 301 301 TYR TYR A . n A 1 148 SER 148 302 302 SER SER A . n A 1 149 THR 149 303 303 THR THR A . n A 1 150 GLU 150 304 304 GLU GLU A . n A 1 151 PRO 151 305 305 PRO PRO A . n A 1 152 ILE 152 306 306 ILE ILE A . n A 1 153 ASN 153 307 307 ASN ASN A . n A 1 154 THR 154 308 308 THR THR A . n A 1 155 PHE 155 309 309 PHE PHE A . n A 1 156 HIS 156 310 310 HIS HIS A . n A 1 157 GLY 157 311 311 GLY GLY A . n A 1 158 ILE 158 312 312 ILE ILE A . n A 1 159 HIS 159 313 313 HIS HIS A . n A 1 160 GLN 160 314 314 GLN GLN A . n A 1 161 ASN 161 315 315 ASN ASN A . n A 1 162 GLU 162 316 316 GLU GLU A . n A 1 163 ASP 163 317 317 ASP ASP A . n A 1 164 GLU 164 318 318 GLU GLU A . n A 1 165 PRO 165 319 319 PRO PRO A . n A 1 166 ILE 166 320 320 ILE ILE A . n A 1 167 ARG 167 321 321 ARG ARG A . n A 1 168 VAL 168 322 322 VAL VAL A . n A 1 169 SER 169 323 323 SER SER A . n A 1 170 TYR 170 324 324 TYR TYR A . n A 1 171 HIS 171 325 325 HIS HIS A . n A 1 172 ARG 172 326 326 ARG ARG A . n A 1 173 ASN 173 327 327 ASN ASN A . n A 1 174 ILE 174 328 328 ILE ILE A . n A 1 175 HIS 175 329 329 HIS HIS A . n A 1 176 TYR 176 330 330 TYR TYR A . n A 1 177 ASN 177 331 331 ASN ASN A . n A 1 178 SER 178 332 332 SER SER A . n A 1 179 VAL 179 333 333 VAL VAL A . n A 1 180 VAL 180 334 334 VAL VAL A . n A 1 181 ASN 181 335 335 ASN ASN A . n A 1 182 PRO 182 336 336 PRO PRO A . n A 1 183 ASN 183 337 ? ? ? A . n A 1 184 LYS 184 338 ? ? ? A . n A 1 185 ALA 185 339 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG 1 400 400 PEG PEG A . C 2 PEG 1 401 401 PEG PEG A . D 3 PG4 1 402 402 PG4 PG4 A . E 4 SO4 1 403 403 SO4 SO4 A . F 5 UNX 1 508 508 UNX UNX A . G 6 HOH 1 404 404 HOH HOH A . G 6 HOH 2 405 405 HOH HOH A . G 6 HOH 3 406 406 HOH HOH A . G 6 HOH 4 407 407 HOH HOH A . G 6 HOH 5 408 408 HOH HOH A . G 6 HOH 6 409 409 HOH HOH A . G 6 HOH 7 410 410 HOH HOH A . G 6 HOH 8 411 411 HOH HOH A . G 6 HOH 9 412 412 HOH HOH A . G 6 HOH 10 413 413 HOH HOH A . G 6 HOH 11 414 414 HOH HOH A . G 6 HOH 12 415 415 HOH HOH A . G 6 HOH 13 416 416 HOH HOH A . G 6 HOH 14 417 417 HOH HOH A . G 6 HOH 15 418 418 HOH HOH A . G 6 HOH 16 419 419 HOH HOH A . G 6 HOH 17 420 420 HOH HOH A . G 6 HOH 18 421 421 HOH HOH A . G 6 HOH 19 422 422 HOH HOH A . G 6 HOH 20 423 423 HOH HOH A . G 6 HOH 21 424 424 HOH HOH A . G 6 HOH 22 425 425 HOH HOH A . G 6 HOH 23 426 426 HOH HOH A . G 6 HOH 24 427 427 HOH HOH A . G 6 HOH 25 428 428 HOH HOH A . G 6 HOH 26 429 429 HOH HOH A . G 6 HOH 27 430 430 HOH HOH A . G 6 HOH 28 431 431 HOH HOH A . G 6 HOH 29 432 432 HOH HOH A . G 6 HOH 30 433 433 HOH HOH A . G 6 HOH 31 434 434 HOH HOH A . G 6 HOH 32 435 435 HOH HOH A . G 6 HOH 33 436 436 HOH HOH A . G 6 HOH 34 437 437 HOH HOH A . G 6 HOH 35 438 438 HOH HOH A . G 6 HOH 36 439 439 HOH HOH A . G 6 HOH 37 440 440 HOH HOH A . G 6 HOH 38 441 441 HOH HOH A . G 6 HOH 39 442 442 HOH HOH A . G 6 HOH 40 443 443 HOH HOH A . G 6 HOH 41 444 444 HOH HOH A . G 6 HOH 42 445 445 HOH HOH A . G 6 HOH 43 446 446 HOH HOH A . G 6 HOH 44 447 447 HOH HOH A . G 6 HOH 45 448 448 HOH HOH A . G 6 HOH 46 449 449 HOH HOH A . G 6 HOH 47 450 450 HOH HOH A . G 6 HOH 48 451 451 HOH HOH A . G 6 HOH 49 452 452 HOH HOH A . G 6 HOH 50 453 453 HOH HOH A . G 6 HOH 51 454 454 HOH HOH A . G 6 HOH 52 455 455 HOH HOH A . G 6 HOH 53 456 456 HOH HOH A . G 6 HOH 54 457 457 HOH HOH A . G 6 HOH 55 458 458 HOH HOH A . G 6 HOH 56 459 459 HOH HOH A . G 6 HOH 57 460 460 HOH HOH A . G 6 HOH 58 461 461 HOH HOH A . G 6 HOH 59 462 462 HOH HOH A . G 6 HOH 60 463 463 HOH HOH A . G 6 HOH 61 464 464 HOH HOH A . G 6 HOH 62 465 465 HOH HOH A . G 6 HOH 63 466 466 HOH HOH A . G 6 HOH 64 467 467 HOH HOH A . G 6 HOH 65 468 468 HOH HOH A . G 6 HOH 66 469 469 HOH HOH A . G 6 HOH 67 470 470 HOH HOH A . G 6 HOH 68 471 471 HOH HOH A . G 6 HOH 69 472 472 HOH HOH A . G 6 HOH 70 473 473 HOH HOH A . G 6 HOH 71 474 474 HOH HOH A . G 6 HOH 72 475 475 HOH HOH A . G 6 HOH 73 476 476 HOH HOH A . G 6 HOH 74 477 477 HOH HOH A . G 6 HOH 75 478 478 HOH HOH A . G 6 HOH 76 479 479 HOH HOH A . G 6 HOH 77 480 480 HOH HOH A . G 6 HOH 78 481 481 HOH HOH A . G 6 HOH 79 482 482 HOH HOH A . G 6 HOH 80 483 483 HOH HOH A . G 6 HOH 81 484 484 HOH HOH A . G 6 HOH 82 485 485 HOH HOH A . G 6 HOH 83 486 486 HOH HOH A . G 6 HOH 84 487 487 HOH HOH A . G 6 HOH 85 488 488 HOH HOH A . G 6 HOH 86 489 489 HOH HOH A . G 6 HOH 87 490 490 HOH HOH A . G 6 HOH 88 491 491 HOH HOH A . G 6 HOH 89 492 492 HOH HOH A . G 6 HOH 90 493 493 HOH HOH A . G 6 HOH 91 494 494 HOH HOH A . G 6 HOH 92 495 495 HOH HOH A . G 6 HOH 93 496 496 HOH HOH A . G 6 HOH 94 497 497 HOH HOH A . G 6 HOH 95 498 498 HOH HOH A . G 6 HOH 96 499 499 HOH HOH A . G 6 HOH 97 500 500 HOH HOH A . G 6 HOH 98 501 501 HOH HOH A . G 6 HOH 99 502 502 HOH HOH A . G 6 HOH 100 503 503 HOH HOH A . G 6 HOH 101 504 504 HOH HOH A . G 6 HOH 102 505 505 HOH HOH A . G 6 HOH 103 506 506 HOH HOH A . G 6 HOH 104 507 507 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 37 A MSE 191 ? MET SELENOMETHIONINE 2 A MSE 64 A MSE 218 ? MET SELENOMETHIONINE 3 A MSE 85 A MSE 239 ? MET SELENOMETHIONINE 4 A MSE 94 A MSE 248 ? MET SELENOMETHIONINE 5 A MSE 98 A MSE 252 ? MET SELENOMETHIONINE 6 A MSE 131 A MSE 285 ? MET SELENOMETHIONINE 7 A MSE 134 A MSE 288 ? MET SELENOMETHIONINE 8 A MSE 137 A MSE 291 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-15 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 11.2480 45.8759 0.8865 0.4136 0.1025 0.4186 0.0089 0.0043 0.1039 18.9632 45.2171 4.0908 1.0946 -5.3363 -11.1142 0.6278 0.4083 1.0212 -0.9876 -0.8920 -1.9121 0.0596 0.1190 0.2642 'X-RAY DIFFRACTION' 2 ? refined 4.8913 35.7778 5.0118 0.1045 0.0702 0.1212 0.0283 -0.0131 -0.0062 8.5258 9.0281 2.6903 4.7811 -1.3875 -0.2792 0.1100 0.0129 0.4566 -0.1929 -0.0923 0.3720 -0.2890 -0.1736 -0.0177 'X-RAY DIFFRACTION' 3 ? refined 4.9616 28.3600 10.8051 0.0597 0.1155 0.1034 0.0133 0.0005 0.0009 7.7955 1.1121 4.9761 2.1877 5.3358 1.5415 -0.0851 -0.2003 0.0895 0.0266 0.0137 0.1757 0.0215 -0.3152 0.0714 'X-RAY DIFFRACTION' 4 ? refined 19.1127 28.2203 17.6643 0.0388 0.0545 0.0206 0.0293 -0.0066 0.0012 4.1316 3.3947 4.5813 -0.2020 -0.5363 0.3865 -0.0379 -0.1680 0.2126 0.0275 0.0465 -0.0605 -0.1079 0.0743 -0.0086 'X-RAY DIFFRACTION' 5 ? refined 26.4141 24.5755 20.4552 0.0677 0.0973 0.0256 0.0180 -0.0242 0.0020 7.7196 5.9596 9.4960 -4.2031 -3.4457 4.2779 -0.0484 -0.1145 0.2546 0.1023 0.2217 -0.3114 0.0542 0.4596 -0.1733 'X-RAY DIFFRACTION' 6 ? refined 34.7107 17.0934 8.2406 0.1294 0.3190 0.1671 0.0661 -0.0284 -0.0970 1.7958 3.7046 7.3626 -1.7004 -3.5122 4.1916 -0.1128 -0.4471 0.2277 0.0597 0.6196 -0.2785 0.2261 1.1155 -0.5068 'X-RAY DIFFRACTION' 7 ? refined 23.4405 17.6898 10.0062 0.1094 0.0552 0.0441 0.0478 0.0130 0.0057 6.0618 2.9494 5.9309 2.1872 0.7623 1.3317 -0.0073 0.0514 0.0596 0.1076 0.0690 0.0041 0.1356 0.2201 -0.0617 'X-RAY DIFFRACTION' 8 ? refined 14.7132 21.1362 2.8621 0.0648 0.0615 0.0450 0.0005 0.0129 0.0016 2.1736 5.5172 1.7493 -2.0871 -0.2154 0.9034 0.0353 0.1580 -0.0955 0.1253 -0.1676 0.1289 0.1203 -0.0930 0.1324 'X-RAY DIFFRACTION' 9 ? refined 13.5159 10.2080 10.3202 0.2560 0.1421 0.2883 -0.1171 0.0494 0.0163 13.4268 27.1698 11.4792 -14.5247 -1.7934 -7.3933 -0.2558 0.1452 -0.8247 0.0896 0.0726 1.1835 0.6913 -0.3282 0.1832 'X-RAY DIFFRACTION' 10 ? refined 14.1881 28.7169 9.3355 0.0542 0.0522 0.0148 0.0130 -0.0020 0.0033 3.6870 3.6653 3.6149 -1.3063 -0.0511 -0.1817 0.0272 -0.0083 0.0678 -0.1281 -0.0552 -0.0052 -0.0643 0.0948 0.0280 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 191 ? ? A 196 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 197 ? ? A 207 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 208 ? ? A 218 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 219 ? ? A 237 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 238 ? ? A 248 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 249 ? ? A 281 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 282 ? ? A 296 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 297 ? ? A 313 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 314 ? ? A 318 ? ? ? ? 'X-RAY DIFFRACTION' 10 10 A 319 ? ? A 336 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SHELX 'model building' . ? 2 REFMAC refinement 5.5.0109 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 SHELX phasing . ? 6 # _pdbx_entry_details.entry_id 3PFY _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THE SEQUENCE IN THIS ENTRY CORRESPONDS TO ISOFORM 2 OF UNP Q96G74' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 326 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -47.32 _pdbx_validate_torsion.psi 150.29 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MSE 191 ? CG ? A MSE 37 CG 2 1 Y 1 A MSE 191 ? SE ? A MSE 37 SE 3 1 Y 1 A MSE 191 ? CE ? A MSE 37 CE 4 1 Y 1 A ASP 192 ? OD1 ? A ASP 38 OD1 5 1 Y 1 A ASP 192 ? OD2 ? A ASP 38 OD2 6 1 Y 1 A LYS 205 ? CE ? A LYS 51 CE 7 1 Y 1 A LYS 205 ? NZ ? A LYS 51 NZ 8 1 Y 1 A LYS 253 ? CE ? A LYS 99 CE 9 1 Y 1 A LYS 253 ? NZ ? A LYS 99 NZ 10 1 Y 1 A ILE 328 ? CD1 ? A ILE 174 CD1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 155 ? A MSE 1 2 1 Y 1 A HIS 156 ? A HIS 2 3 1 Y 1 A HIS 157 ? A HIS 3 4 1 Y 1 A HIS 158 ? A HIS 4 5 1 Y 1 A HIS 159 ? A HIS 5 6 1 Y 1 A HIS 160 ? A HIS 6 7 1 Y 1 A HIS 161 ? A HIS 7 8 1 Y 1 A SER 162 ? A SER 8 9 1 Y 1 A SER 163 ? A SER 9 10 1 Y 1 A GLY 164 ? A GLY 10 11 1 Y 1 A ARG 165 ? A ARG 11 12 1 Y 1 A GLU 166 ? A GLU 12 13 1 Y 1 A ASN 167 ? A ASN 13 14 1 Y 1 A LEU 168 ? A LEU 14 15 1 Y 1 A TYR 169 ? A TYR 15 16 1 Y 1 A PHE 170 ? A PHE 16 17 1 Y 1 A GLN 171 ? A GLN 17 18 1 Y 1 A GLY 172 ? A GLY 18 19 1 Y 1 A ALA 173 ? A ALA 19 20 1 Y 1 A GLY 174 ? A GLY 20 21 1 Y 1 A TYR 175 ? A TYR 21 22 1 Y 1 A ASN 176 ? A ASN 22 23 1 Y 1 A SER 177 ? A SER 23 24 1 Y 1 A GLU 178 ? A GLU 24 25 1 Y 1 A ASP 179 ? A ASP 25 26 1 Y 1 A GLU 180 ? A GLU 26 27 1 Y 1 A TYR 181 ? A TYR 27 28 1 Y 1 A GLU 182 ? A GLU 28 29 1 Y 1 A ALA 183 ? A ALA 29 30 1 Y 1 A ALA 184 ? A ALA 30 31 1 Y 1 A ALA 185 ? A ALA 31 32 1 Y 1 A ALA 186 ? A ALA 32 33 1 Y 1 A ARG 187 ? A ARG 33 34 1 Y 1 A ILE 188 ? A ILE 34 35 1 Y 1 A GLU 189 ? A GLU 35 36 1 Y 1 A ALA 190 ? A ALA 36 37 1 Y 1 A THR 263 ? A THR 109 38 1 Y 1 A GLU 264 ? A GLU 110 39 1 Y 1 A ASP 265 ? A ASP 111 40 1 Y 1 A PHE 266 ? A PHE 112 41 1 Y 1 A THR 267 ? A THR 113 42 1 Y 1 A THR 268 ? A THR 114 43 1 Y 1 A TYR 269 ? A TYR 115 44 1 Y 1 A ILE 270 ? A ILE 116 45 1 Y 1 A ASN 271 ? A ASN 117 46 1 Y 1 A ARG 272 ? A ARG 118 47 1 Y 1 A LYS 273 ? A LYS 119 48 1 Y 1 A ARG 274 ? A ARG 120 49 1 Y 1 A LYS 275 ? A LYS 121 50 1 Y 1 A ASN 276 ? A ASN 122 51 1 Y 1 A ASN 277 ? A ASN 123 52 1 Y 1 A CYS 278 ? A CYS 124 53 1 Y 1 A HIS 279 ? A HIS 125 54 1 Y 1 A ASN 337 ? A ASN 183 55 1 Y 1 A LYS 338 ? A LYS 184 56 1 Y 1 A ALA 339 ? A ALA 185 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DI(HYDROXYETHYL)ETHER' PEG 3 'TETRAETHYLENE GLYCOL' PG4 4 'SULFATE ION' SO4 5 'UNKNOWN ATOM OR ION' UNX 6 water HOH #