data_3PON # _entry.id 3PON # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3PON pdb_00003pon 10.2210/pdb3pon/pdb RCSB RCSB062630 ? ? WWPDB D_1000062630 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3POB 'The same peptide in complex with the MASP-1 CUB2 domain' unspecified PDB 3POD 'shorter peptide that was the search model for this one' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3PON _pdbx_database_status.recvd_initial_deposition_date 2010-11-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gingras, A.R.' 1 'Moody, P.C.E.' 2 'Wallis, R.' 3 # _citation.id primary _citation.title ;Structural Basis of Mannan-Binding Lectin Recognition by Its Associated Serine Protease MASP-1: Implications for Complement Activation. ; _citation.journal_abbrev Structure _citation.journal_volume 19 _citation.page_first 1635 _citation.page_last 1643 _citation.year 2011 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22078562 _citation.pdbx_database_id_DOI 10.1016/j.str.2011.08.014 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gingras, A.R.' 1 ? primary 'Girija, U.V.' 2 ? primary 'Keeble, A.H.' 3 ? primary 'Panchal, R.' 4 ? primary 'Mitchell, D.A.' 5 ? primary 'Moody, P.C.' 6 ? primary 'Wallis, R.' 7 ? # _cell.entry_id 3PON _cell.length_a 85.270 _cell.length_b 23.650 _cell.length_c 26.940 _cell.angle_alpha 90.00 _cell.angle_beta 94.09 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PON _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'MBL collagen-like peptide' 2479.700 3 ? ? ? ? 2 water nat water 18.015 98 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)GP(HYP)GP(HYP)GP(HYP)GP(HYP)GKLGP(HYP)GP(HYP)GP(HYP)GP(HYP)(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XGPPGPPGPPGPPGKLGPPGPPGPPGPPX _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 GLY n 1 3 PRO n 1 4 HYP n 1 5 GLY n 1 6 PRO n 1 7 HYP n 1 8 GLY n 1 9 PRO n 1 10 HYP n 1 11 GLY n 1 12 PRO n 1 13 HYP n 1 14 GLY n 1 15 LYS n 1 16 LEU n 1 17 GLY n 1 18 PRO n 1 19 HYP n 1 20 GLY n 1 21 PRO n 1 22 HYP n 1 23 GLY n 1 24 PRO n 1 25 HYP n 1 26 GLY n 1 27 PRO n 1 28 HYP n 1 29 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthetic peptide' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3PON _struct_ref.pdbx_db_accession 3PON _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code XGPPGPPGPPGPPGKLGPPGPPGPPGPPX _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3PON A 1 ? 29 ? 3PON 1 ? 29 ? 1 29 2 1 3PON B 1 ? 29 ? 3PON 1 ? 29 ? 1 29 3 1 3PON C 1 ? 29 ? 3PON 1 ? 29 ? 1 29 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 # _exptl.entry_id 3PON _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.82 _exptl_crystal.density_percent_sol 32.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '1.6M Ammonium Sulphate, 100mM MES, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2010-06-18 _diffrn_detector.details 'focusing mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'horizontally side diffracting Silicon 111 crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.872600 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.872600 # _reflns.entry_id 3PON _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 23.485 _reflns.d_resolution_high 1.5 _reflns.number_obs 8744 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.093 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.5 _reflns_shell.d_res_low 1.58 _reflns_shell.percent_possible_all 99.4 _reflns_shell.Rmerge_I_obs 0.359 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2 _reflns_shell.pdbx_redundancy 2.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 3561 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3PON _refine.ls_number_reflns_obs 8296 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 21.26 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 98.97 _refine.ls_R_factor_obs 0.14344 _refine.ls_R_factor_all 0.14344 _refine.ls_R_factor_R_work 0.14097 _refine.ls_R_factor_R_free 0.18981 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 415 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.977 _refine.correlation_coeff_Fo_to_Fc_free 0.969 _refine.B_iso_mean 9.640 _refine.aniso_B[1][1] -0.14 _refine.aniso_B[2][2] 0.38 _refine.aniso_B[3][3] -0.24 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.03 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 3POD' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.079 _refine.overall_SU_ML 0.045 _refine.overall_SU_B 2.707 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.101 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 515 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 98 _refine_hist.number_atoms_total 613 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 21.26 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.026 0.021 ? 556 'X-RAY DIFFRACTION' ? r_bond_other_d 0.016 0.020 ? 425 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.777 2.501 ? 802 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.205 3.000 ? 1016 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.693 5.000 ? 76 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 31.194 15.000 ? 18 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.153 0.200 ? 78 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.012 0.030 ? 578 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.000 0.020 ? 30 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.323 1.500 ? 420 'X-RAY DIFFRACTION' ? r_mcbond_other 0.899 1.500 ? 139 'X-RAY DIFFRACTION' ? r_mcangle_it 3.345 2.000 ? 692 'X-RAY DIFFRACTION' ? r_scbond_it 5.084 3.000 ? 136 'X-RAY DIFFRACTION' ? r_scangle_it 7.113 4.500 ? 110 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2.192 3.000 ? 978 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.500 _refine_ls_shell.d_res_low 1.539 _refine_ls_shell.number_reflns_R_work 600 _refine_ls_shell.R_factor_R_work 0.209 _refine_ls_shell.percent_reflns_obs 98.89 _refine_ls_shell.R_factor_R_free 0.376 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 21 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3PON _struct.title 'Crystal structure of MBL collagen-like peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PON _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text ;Collagen peptide, MBL collagen-like region, Complement protein, lectin pathway of complement, MASPs (MASP-1 to 3) CUB1 and CUB2 domains, Bloodstream, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A GLY 2 N ? ? A ACE 1 A GLY 2 1_555 ? ? ? ? ? ? ? 1.389 ? ? covale2 covale both ? A PRO 3 C ? ? ? 1_555 A HYP 4 N ? ? A PRO 3 A HYP 4 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A HYP 4 C ? ? ? 1_555 A GLY 5 N ? ? A HYP 4 A GLY 5 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale4 covale both ? A PRO 6 C ? ? ? 1_555 A HYP 7 N ? ? A PRO 6 A HYP 7 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale5 covale both ? A HYP 7 C ? ? ? 1_555 A GLY 8 N ? ? A HYP 7 A GLY 8 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale6 covale both ? A PRO 9 C ? ? ? 1_555 A HYP 10 N ? ? A PRO 9 A HYP 10 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale7 covale both ? A HYP 10 C ? ? ? 1_555 A GLY 11 N ? ? A HYP 10 A GLY 11 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale8 covale both ? A PRO 12 C ? ? ? 1_555 A HYP 13 N ? ? A PRO 12 A HYP 13 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale9 covale both ? A HYP 13 C ? ? ? 1_555 A GLY 14 N ? ? A HYP 13 A GLY 14 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale10 covale both ? A PRO 18 C ? ? ? 1_555 A HYP 19 N ? ? A PRO 18 A HYP 19 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale11 covale both ? A HYP 19 C ? ? ? 1_555 A GLY 20 N ? ? A HYP 19 A GLY 20 1_555 ? ? ? ? ? ? ? 1.307 ? ? covale12 covale both ? A PRO 21 C ? ? ? 1_555 A HYP 22 N ? ? A PRO 21 A HYP 22 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale13 covale both ? A HYP 22 C ? ? ? 1_555 A GLY 23 N ? ? A HYP 22 A GLY 23 1_555 ? ? ? ? ? ? ? 1.300 ? ? covale14 covale both ? A PRO 24 C ? ? ? 1_555 A HYP 25 N ? ? A PRO 24 A HYP 25 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale15 covale both ? A HYP 25 C ? ? ? 1_555 A GLY 26 N ? ? A HYP 25 A GLY 26 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale16 covale both ? A PRO 27 C ? ? ? 1_555 A HYP 28 N ? ? A PRO 27 A HYP 28 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale17 covale both ? A HYP 28 C ? ? ? 1_555 A NH2 29 N ? ? A HYP 28 A NH2 29 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale18 covale both ? B ACE 1 C ? ? ? 1_555 B GLY 2 N ? ? B ACE 1 B GLY 2 1_555 ? ? ? ? ? ? ? 1.289 ? ? covale19 covale both ? B PRO 3 C ? ? ? 1_555 B HYP 4 N ? ? B PRO 3 B HYP 4 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale20 covale both ? B HYP 4 C ? ? ? 1_555 B GLY 5 N ? ? B HYP 4 B GLY 5 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale21 covale both ? B PRO 6 C ? ? ? 1_555 B HYP 7 N ? ? B PRO 6 B HYP 7 1_555 ? ? ? ? ? ? ? 1.361 ? ? covale22 covale both ? B HYP 7 C ? ? ? 1_555 B GLY 8 N ? ? B HYP 7 B GLY 8 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale23 covale both ? B PRO 9 C ? ? ? 1_555 B HYP 10 N ? ? B PRO 9 B HYP 10 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale24 covale both ? B HYP 10 C ? ? ? 1_555 B GLY 11 N ? ? B HYP 10 B GLY 11 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale25 covale both ? B PRO 12 C ? ? ? 1_555 B HYP 13 N ? ? B PRO 12 B HYP 13 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale26 covale both ? B HYP 13 C ? ? ? 1_555 B GLY 14 N ? ? B HYP 13 B GLY 14 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale27 covale both ? B PRO 18 C ? ? ? 1_555 B HYP 19 N ? ? B PRO 18 B HYP 19 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale28 covale both ? B HYP 19 C ? ? ? 1_555 B GLY 20 N ? ? B HYP 19 B GLY 20 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale29 covale both ? B PRO 21 C ? ? ? 1_555 B HYP 22 N ? ? B PRO 21 B HYP 22 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale30 covale both ? B HYP 22 C ? ? ? 1_555 B GLY 23 N ? ? B HYP 22 B GLY 23 1_555 ? ? ? ? ? ? ? 1.302 ? ? covale31 covale both ? B PRO 24 C ? ? ? 1_555 B HYP 25 N ? ? B PRO 24 B HYP 25 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale32 covale both ? B HYP 25 C ? ? ? 1_555 B GLY 26 N ? ? B HYP 25 B GLY 26 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale33 covale both ? B PRO 27 C ? ? ? 1_555 B HYP 28 N ? ? B PRO 27 B HYP 28 1_555 ? ? ? ? ? ? ? 1.363 ? ? covale34 covale both ? B HYP 28 C ? ? ? 1_555 B NH2 29 N ? ? B HYP 28 B NH2 29 1_555 ? ? ? ? ? ? ? 1.231 ? ? covale35 covale both ? C ACE 1 C ? ? ? 1_555 C GLY 2 N ? ? C ACE 1 C GLY 2 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale36 covale both ? C PRO 3 C ? ? ? 1_555 C HYP 4 N ? ? C PRO 3 C HYP 4 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale37 covale both ? C HYP 4 C ? ? ? 1_555 C GLY 5 N ? ? C HYP 4 C GLY 5 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale38 covale both ? C PRO 6 C ? ? ? 1_555 C HYP 7 N ? ? C PRO 6 C HYP 7 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale39 covale both ? C HYP 7 C ? ? ? 1_555 C GLY 8 N ? ? C HYP 7 C GLY 8 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale40 covale both ? C PRO 9 C ? ? ? 1_555 C HYP 10 N ? ? C PRO 9 C HYP 10 1_555 ? ? ? ? ? ? ? 1.307 ? ? covale41 covale both ? C HYP 10 C ? ? ? 1_555 C GLY 11 N ? ? C HYP 10 C GLY 11 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale42 covale both ? C PRO 12 C ? ? ? 1_555 C HYP 13 N ? ? C PRO 12 C HYP 13 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale43 covale both ? C HYP 13 C ? ? ? 1_555 C GLY 14 N ? ? C HYP 13 C GLY 14 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale44 covale both ? C PRO 18 C ? ? ? 1_555 C HYP 19 N ? ? C PRO 18 C HYP 19 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale45 covale both ? C HYP 19 C ? ? ? 1_555 C GLY 20 N ? ? C HYP 19 C GLY 20 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale46 covale both ? C PRO 21 C ? ? ? 1_555 C HYP 22 N ? ? C PRO 21 C HYP 22 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale47 covale both ? C HYP 22 C ? ? ? 1_555 C GLY 23 N ? ? C HYP 22 C GLY 23 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale48 covale both ? C PRO 24 C ? ? ? 1_555 C HYP 25 N ? ? C PRO 24 C HYP 25 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale49 covale both ? C HYP 25 C ? ? ? 1_555 C GLY 26 N ? ? C HYP 25 C GLY 26 1_555 ? ? ? ? ? ? ? 1.310 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 3PON _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3PON _atom_sites.fract_transf_matrix[1][1] 0.011727 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000839 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.042283 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.037214 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 1 1 ACE ACE A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 PRO 3 3 3 PRO PRO A . n A 1 4 HYP 4 4 4 HYP HYP A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 HYP 7 7 7 HYP HYP A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 HYP 10 10 10 HYP HYP A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 HYP 13 13 13 HYP HYP A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 HYP 19 19 19 HYP HYP A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 HYP 22 22 22 HYP HYP A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 HYP 25 25 25 HYP HYP A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 HYP 28 28 28 HYP HYP A . n A 1 29 NH2 29 29 29 NH2 NH2 A . n B 1 1 ACE 1 1 1 ACE ACE B . n B 1 2 GLY 2 2 2 GLY GLY B . n B 1 3 PRO 3 3 3 PRO PRO B . n B 1 4 HYP 4 4 4 HYP HYP B . n B 1 5 GLY 5 5 5 GLY GLY B . n B 1 6 PRO 6 6 6 PRO PRO B . n B 1 7 HYP 7 7 7 HYP HYP B . n B 1 8 GLY 8 8 8 GLY GLY B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 HYP 10 10 10 HYP HYP B . n B 1 11 GLY 11 11 11 GLY GLY B . n B 1 12 PRO 12 12 12 PRO PRO B . n B 1 13 HYP 13 13 13 HYP HYP B . n B 1 14 GLY 14 14 14 GLY GLY B . n B 1 15 LYS 15 15 15 LYS LYS B . n B 1 16 LEU 16 16 16 LEU LEU B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 PRO 18 18 18 PRO PRO B . n B 1 19 HYP 19 19 19 HYP HYP B . n B 1 20 GLY 20 20 20 GLY GLY B . n B 1 21 PRO 21 21 21 PRO PRO B . n B 1 22 HYP 22 22 22 HYP HYP B . n B 1 23 GLY 23 23 23 GLY GLY B . n B 1 24 PRO 24 24 24 PRO PRO B . n B 1 25 HYP 25 25 25 HYP HYP B . n B 1 26 GLY 26 26 26 GLY GLY B . n B 1 27 PRO 27 27 27 PRO PRO B . n B 1 28 HYP 28 28 28 HYP HYP B . n B 1 29 NH2 29 29 29 NH2 NH2 B . n C 1 1 ACE 1 1 1 ACE ACE C . n C 1 2 GLY 2 2 2 GLY GLY C . n C 1 3 PRO 3 3 3 PRO PRO C . n C 1 4 HYP 4 4 4 HYP HYP C . n C 1 5 GLY 5 5 5 GLY GLY C . n C 1 6 PRO 6 6 6 PRO PRO C . n C 1 7 HYP 7 7 7 HYP HYP C . n C 1 8 GLY 8 8 8 GLY GLY C . n C 1 9 PRO 9 9 9 PRO PRO C . n C 1 10 HYP 10 10 10 HYP HYP C . n C 1 11 GLY 11 11 11 GLY GLY C . n C 1 12 PRO 12 12 12 PRO PRO C . n C 1 13 HYP 13 13 13 HYP HYP C . n C 1 14 GLY 14 14 14 GLY GLY C . n C 1 15 LYS 15 15 15 LYS LYS C . n C 1 16 LEU 16 16 16 LEU LEU C . n C 1 17 GLY 17 17 17 GLY GLY C . n C 1 18 PRO 18 18 18 PRO PRO C . n C 1 19 HYP 19 19 19 HYP HYP C . n C 1 20 GLY 20 20 20 GLY GLY C . n C 1 21 PRO 21 21 21 PRO PRO C . n C 1 22 HYP 22 22 22 HYP HYP C . n C 1 23 GLY 23 23 23 GLY GLY C . n C 1 24 PRO 24 24 24 PRO PRO C . n C 1 25 HYP 25 25 25 HYP HYP C . n C 1 26 GLY 26 26 26 GLY GLY C . n C 1 27 PRO 27 27 ? ? ? C . n C 1 28 HYP 28 28 ? ? ? C . n C 1 29 NH2 29 29 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 30 30 HOH HOH A . D 2 HOH 2 31 31 HOH HOH A . D 2 HOH 3 32 32 HOH HOH A . D 2 HOH 4 33 33 HOH HOH A . D 2 HOH 5 34 34 HOH HOH A . D 2 HOH 6 35 35 HOH HOH A . D 2 HOH 7 36 36 HOH HOH A . D 2 HOH 8 37 37 HOH HOH A . D 2 HOH 9 38 38 HOH HOH A . D 2 HOH 10 39 39 HOH HOH A . D 2 HOH 11 40 40 HOH HOH A . D 2 HOH 12 41 41 HOH HOH A . D 2 HOH 13 42 42 HOH HOH A . D 2 HOH 14 43 43 HOH HOH A . D 2 HOH 15 44 44 HOH HOH A . D 2 HOH 16 45 45 HOH HOH A . D 2 HOH 17 46 46 HOH HOH A . D 2 HOH 18 47 47 HOH HOH A . D 2 HOH 19 48 48 HOH HOH A . D 2 HOH 20 50 50 HOH HOH A . D 2 HOH 21 51 51 HOH HOH A . D 2 HOH 22 57 57 HOH HOH A . D 2 HOH 23 60 60 HOH HOH A . D 2 HOH 24 61 61 HOH HOH A . D 2 HOH 25 63 63 HOH HOH A . D 2 HOH 26 64 64 HOH HOH A . D 2 HOH 27 65 65 HOH HOH A . D 2 HOH 28 70 70 HOH HOH A . D 2 HOH 29 73 73 HOH HOH A . D 2 HOH 30 76 76 HOH HOH A . D 2 HOH 31 85 85 HOH HOH A . D 2 HOH 32 86 86 HOH HOH A . D 2 HOH 33 88 88 HOH HOH A . D 2 HOH 34 93 93 HOH HOH A . D 2 HOH 35 98 98 HOH HOH A . E 2 HOH 1 30 30 HOH HOH B . E 2 HOH 2 31 31 HOH HOH B . E 2 HOH 3 32 32 HOH HOH B . E 2 HOH 4 33 33 HOH HOH B . E 2 HOH 5 34 34 HOH HOH B . E 2 HOH 6 35 35 HOH HOH B . E 2 HOH 7 36 36 HOH HOH B . E 2 HOH 8 37 37 HOH HOH B . E 2 HOH 9 38 38 HOH HOH B . E 2 HOH 10 52 52 HOH HOH B . E 2 HOH 11 53 53 HOH HOH B . E 2 HOH 12 54 54 HOH HOH B . E 2 HOH 13 56 56 HOH HOH B . E 2 HOH 14 58 58 HOH HOH B . E 2 HOH 15 59 59 HOH HOH B . E 2 HOH 16 62 62 HOH HOH B . E 2 HOH 17 67 67 HOH HOH B . E 2 HOH 18 71 71 HOH HOH B . E 2 HOH 19 74 74 HOH HOH B . E 2 HOH 20 75 75 HOH HOH B . E 2 HOH 21 77 77 HOH HOH B . E 2 HOH 22 79 79 HOH HOH B . E 2 HOH 23 80 80 HOH HOH B . E 2 HOH 24 83 83 HOH HOH B . E 2 HOH 25 84 84 HOH HOH B . E 2 HOH 26 87 87 HOH HOH B . E 2 HOH 27 90 90 HOH HOH B . E 2 HOH 28 91 91 HOH HOH B . E 2 HOH 29 92 92 HOH HOH B . E 2 HOH 30 94 94 HOH HOH B . E 2 HOH 31 95 95 HOH HOH B . E 2 HOH 32 96 96 HOH HOH B . E 2 HOH 33 97 97 HOH HOH B . F 2 HOH 1 30 30 HOH HOH C . F 2 HOH 2 31 31 HOH HOH C . F 2 HOH 3 32 32 HOH HOH C . F 2 HOH 4 33 33 HOH HOH C . F 2 HOH 5 34 34 HOH HOH C . F 2 HOH 6 35 35 HOH HOH C . F 2 HOH 7 36 36 HOH HOH C . F 2 HOH 8 37 37 HOH HOH C . F 2 HOH 9 38 38 HOH HOH C . F 2 HOH 10 40 40 HOH HOH C . F 2 HOH 11 41 41 HOH HOH C . F 2 HOH 12 42 42 HOH HOH C . F 2 HOH 13 43 43 HOH HOH C . F 2 HOH 14 44 44 HOH HOH C . F 2 HOH 15 45 45 HOH HOH C . F 2 HOH 16 46 46 HOH HOH C . F 2 HOH 17 47 47 HOH HOH C . F 2 HOH 18 48 48 HOH HOH C . F 2 HOH 19 49 49 HOH HOH C . F 2 HOH 20 50 50 HOH HOH C . F 2 HOH 21 51 49 HOH HOH C . F 2 HOH 22 55 55 HOH HOH C . F 2 HOH 23 66 66 HOH HOH C . F 2 HOH 24 68 68 HOH HOH C . F 2 HOH 25 69 69 HOH HOH C . F 2 HOH 26 72 72 HOH HOH C . F 2 HOH 27 78 78 HOH HOH C . F 2 HOH 28 81 81 HOH HOH C . F 2 HOH 29 82 82 HOH HOH C . F 2 HOH 30 89 89 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A HYP 4 A HYP 4 ? PRO 4-HYDROXYPROLINE 2 A HYP 7 A HYP 7 ? PRO 4-HYDROXYPROLINE 3 A HYP 10 A HYP 10 ? PRO 4-HYDROXYPROLINE 4 A HYP 13 A HYP 13 ? PRO 4-HYDROXYPROLINE 5 A HYP 19 A HYP 19 ? PRO 4-HYDROXYPROLINE 6 A HYP 22 A HYP 22 ? PRO 4-HYDROXYPROLINE 7 A HYP 25 A HYP 25 ? PRO 4-HYDROXYPROLINE 8 A HYP 28 A HYP 28 ? PRO 4-HYDROXYPROLINE 9 B HYP 4 B HYP 4 ? PRO 4-HYDROXYPROLINE 10 B HYP 7 B HYP 7 ? PRO 4-HYDROXYPROLINE 11 B HYP 10 B HYP 10 ? PRO 4-HYDROXYPROLINE 12 B HYP 13 B HYP 13 ? PRO 4-HYDROXYPROLINE 13 B HYP 19 B HYP 19 ? PRO 4-HYDROXYPROLINE 14 B HYP 22 B HYP 22 ? PRO 4-HYDROXYPROLINE 15 B HYP 25 B HYP 25 ? PRO 4-HYDROXYPROLINE 16 B HYP 28 B HYP 28 ? PRO 4-HYDROXYPROLINE 17 C HYP 4 C HYP 4 ? PRO 4-HYDROXYPROLINE 18 C HYP 7 C HYP 7 ? PRO 4-HYDROXYPROLINE 19 C HYP 10 C HYP 10 ? PRO 4-HYDROXYPROLINE 20 C HYP 13 C HYP 13 ? PRO 4-HYDROXYPROLINE 21 C HYP 19 C HYP 19 ? PRO 4-HYDROXYPROLINE 22 C HYP 22 C HYP 22 ? PRO 4-HYDROXYPROLINE 23 C HYP 25 C HYP 25 ? PRO 4-HYDROXYPROLINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 software_defined_assembly PISA hexameric 6 3 software_defined_assembly PISA hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F 2 1,2 A,B,C,D,E,F 3 1,3 A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5410 ? 1 MORE -26 ? 1 'SSA (A^2)' 4560 ? 2 'ABSA (A^2)' 13200 ? 2 MORE -72 ? 2 'SSA (A^2)' 6750 ? 3 'ABSA (A^2)' 12530 ? 3 MORE -66 ? 3 'SSA (A^2)' 7410 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 -1.9214512372 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 26.8713904579 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 46 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-24 2 'Structure model' 1 1 2011-11-30 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_dist_value' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 6 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MxCuBE 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C PRO 27 ? C PRO 27 2 1 Y 1 C HYP 28 ? C HYP 28 3 1 Y 1 C NH2 29 ? C NH2 29 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 GLY N N N N 8 GLY CA C N N 9 GLY C C N N 10 GLY O O N N 11 GLY OXT O N N 12 GLY H H N N 13 GLY H2 H N N 14 GLY HA2 H N N 15 GLY HA3 H N N 16 GLY HXT H N N 17 HOH O O N N 18 HOH H1 H N N 19 HOH H2 H N N 20 HYP N N N N 21 HYP CA C N S 22 HYP C C N N 23 HYP O O N N 24 HYP CB C N N 25 HYP CG C N R 26 HYP CD C N N 27 HYP OD1 O N N 28 HYP OXT O N N 29 HYP H H N N 30 HYP HA H N N 31 HYP HB2 H N N 32 HYP HB3 H N N 33 HYP HG H N N 34 HYP HD22 H N N 35 HYP HD23 H N N 36 HYP HD1 H N N 37 HYP HXT H N N 38 LEU N N N N 39 LEU CA C N S 40 LEU C C N N 41 LEU O O N N 42 LEU CB C N N 43 LEU CG C N N 44 LEU CD1 C N N 45 LEU CD2 C N N 46 LEU OXT O N N 47 LEU H H N N 48 LEU H2 H N N 49 LEU HA H N N 50 LEU HB2 H N N 51 LEU HB3 H N N 52 LEU HG H N N 53 LEU HD11 H N N 54 LEU HD12 H N N 55 LEU HD13 H N N 56 LEU HD21 H N N 57 LEU HD22 H N N 58 LEU HD23 H N N 59 LEU HXT H N N 60 LYS N N N N 61 LYS CA C N S 62 LYS C C N N 63 LYS O O N N 64 LYS CB C N N 65 LYS CG C N N 66 LYS CD C N N 67 LYS CE C N N 68 LYS NZ N N N 69 LYS OXT O N N 70 LYS H H N N 71 LYS H2 H N N 72 LYS HA H N N 73 LYS HB2 H N N 74 LYS HB3 H N N 75 LYS HG2 H N N 76 LYS HG3 H N N 77 LYS HD2 H N N 78 LYS HD3 H N N 79 LYS HE2 H N N 80 LYS HE3 H N N 81 LYS HZ1 H N N 82 LYS HZ2 H N N 83 LYS HZ3 H N N 84 LYS HXT H N N 85 NH2 N N N N 86 NH2 HN1 H N N 87 NH2 HN2 H N N 88 PRO N N N N 89 PRO CA C N S 90 PRO C C N N 91 PRO O O N N 92 PRO CB C N N 93 PRO CG C N N 94 PRO CD C N N 95 PRO OXT O N N 96 PRO H H N N 97 PRO HA H N N 98 PRO HB2 H N N 99 PRO HB3 H N N 100 PRO HG2 H N N 101 PRO HG3 H N N 102 PRO HD2 H N N 103 PRO HD3 H N N 104 PRO HXT H N N 105 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 GLY N CA sing N N 7 GLY N H sing N N 8 GLY N H2 sing N N 9 GLY CA C sing N N 10 GLY CA HA2 sing N N 11 GLY CA HA3 sing N N 12 GLY C O doub N N 13 GLY C OXT sing N N 14 GLY OXT HXT sing N N 15 HOH O H1 sing N N 16 HOH O H2 sing N N 17 HYP N CA sing N N 18 HYP N CD sing N N 19 HYP N H sing N N 20 HYP CA C sing N N 21 HYP CA CB sing N N 22 HYP CA HA sing N N 23 HYP C O doub N N 24 HYP C OXT sing N N 25 HYP CB CG sing N N 26 HYP CB HB2 sing N N 27 HYP CB HB3 sing N N 28 HYP CG CD sing N N 29 HYP CG OD1 sing N N 30 HYP CG HG sing N N 31 HYP CD HD22 sing N N 32 HYP CD HD23 sing N N 33 HYP OD1 HD1 sing N N 34 HYP OXT HXT sing N N 35 LEU N CA sing N N 36 LEU N H sing N N 37 LEU N H2 sing N N 38 LEU CA C sing N N 39 LEU CA CB sing N N 40 LEU CA HA sing N N 41 LEU C O doub N N 42 LEU C OXT sing N N 43 LEU CB CG sing N N 44 LEU CB HB2 sing N N 45 LEU CB HB3 sing N N 46 LEU CG CD1 sing N N 47 LEU CG CD2 sing N N 48 LEU CG HG sing N N 49 LEU CD1 HD11 sing N N 50 LEU CD1 HD12 sing N N 51 LEU CD1 HD13 sing N N 52 LEU CD2 HD21 sing N N 53 LEU CD2 HD22 sing N N 54 LEU CD2 HD23 sing N N 55 LEU OXT HXT sing N N 56 LYS N CA sing N N 57 LYS N H sing N N 58 LYS N H2 sing N N 59 LYS CA C sing N N 60 LYS CA CB sing N N 61 LYS CA HA sing N N 62 LYS C O doub N N 63 LYS C OXT sing N N 64 LYS CB CG sing N N 65 LYS CB HB2 sing N N 66 LYS CB HB3 sing N N 67 LYS CG CD sing N N 68 LYS CG HG2 sing N N 69 LYS CG HG3 sing N N 70 LYS CD CE sing N N 71 LYS CD HD2 sing N N 72 LYS CD HD3 sing N N 73 LYS CE NZ sing N N 74 LYS CE HE2 sing N N 75 LYS CE HE3 sing N N 76 LYS NZ HZ1 sing N N 77 LYS NZ HZ2 sing N N 78 LYS NZ HZ3 sing N N 79 LYS OXT HXT sing N N 80 NH2 N HN1 sing N N 81 NH2 N HN2 sing N N 82 PRO N CA sing N N 83 PRO N CD sing N N 84 PRO N H sing N N 85 PRO CA C sing N N 86 PRO CA CB sing N N 87 PRO CA HA sing N N 88 PRO C O doub N N 89 PRO C OXT sing N N 90 PRO CB CG sing N N 91 PRO CB HB2 sing N N 92 PRO CB HB3 sing N N 93 PRO CG CD sing N N 94 PRO CG HG2 sing N N 95 PRO CG HG3 sing N N 96 PRO CD HD2 sing N N 97 PRO CD HD3 sing N N 98 PRO OXT HXT sing N N 99 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3POD _pdbx_initial_refinement_model.details 'PDB ENTRY 3POD' #