data_3PR5 # _entry.id 3PR5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3PR5 pdb_00003pr5 10.2210/pdb3pr5/pdb NDB NA0866 ? ? RCSB RCSB062719 ? ? WWPDB D_1000062719 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3PR5 _pdbx_database_status.recvd_initial_deposition_date 2010-11-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kirouac, K.N.' 1 'Ling, H.' 2 # _citation.id primary _citation.title 'Structural mechanism of ribonucleotide discrimination by a Y-family DNA polymerase.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 407 _citation.page_first 382 _citation.page_last 390 _citation.year 2011 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21295588 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2011.01.037 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kirouac, K.N.' 1 ? primary 'Suo, Z.' 2 ? primary 'Ling, H.' 3 ? # _cell.entry_id 3PR5 _cell.length_a 95.607 _cell.length_b 101.993 _cell.length_c 52.288 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3PR5 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase IV' 38927.426 1 2.7.7.7 Y12A ? ? 2 polymer syn ;DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*C)-3') ; 4081.659 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*TP*TP*CP*AP*TP*GP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3') ; 5378.478 1 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 5 non-polymer syn "ADENOSINE-5'-TRIPHOSPHATE" 507.181 1 ? ? ? ? 6 water nat water 18.015 77 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Pol IV' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MIVLFVDFDYFAAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFI ; ;MIVLFVDFDYFAAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFI ; B ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DG)(DG)(DG)(DA)(DA)(DG)(DG)(DA)(DC)(DT)(DC)' GGGGGAAGGACTC P ? 3 polydeoxyribonucleotide no no '(DT)(DT)(DC)(DA)(DT)(DG)(DA)(DG)(DT)(DC)(DC)(DT)(DT)(DC)(DC)(DC)(DC)(DC)' TTCATGAGTCCTTCCCCC T ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 VAL n 1 4 LEU n 1 5 PHE n 1 6 VAL n 1 7 ASP n 1 8 PHE n 1 9 ASP n 1 10 TYR n 1 11 PHE n 1 12 ALA n 1 13 ALA n 1 14 GLN n 1 15 VAL n 1 16 GLU n 1 17 GLU n 1 18 VAL n 1 19 LEU n 1 20 ASN n 1 21 PRO n 1 22 SER n 1 23 LEU n 1 24 LYS n 1 25 GLY n 1 26 LYS n 1 27 PRO n 1 28 VAL n 1 29 VAL n 1 30 VAL n 1 31 CYS n 1 32 VAL n 1 33 PHE n 1 34 SER n 1 35 GLY n 1 36 ARG n 1 37 PHE n 1 38 GLU n 1 39 ASP n 1 40 SER n 1 41 GLY n 1 42 ALA n 1 43 VAL n 1 44 ALA n 1 45 THR n 1 46 ALA n 1 47 ASN n 1 48 TYR n 1 49 GLU n 1 50 ALA n 1 51 ARG n 1 52 LYS n 1 53 PHE n 1 54 GLY n 1 55 VAL n 1 56 LYS n 1 57 ALA n 1 58 GLY n 1 59 ILE n 1 60 PRO n 1 61 ILE n 1 62 VAL n 1 63 GLU n 1 64 ALA n 1 65 LYS n 1 66 LYS n 1 67 ILE n 1 68 LEU n 1 69 PRO n 1 70 ASN n 1 71 ALA n 1 72 VAL n 1 73 TYR n 1 74 LEU n 1 75 PRO n 1 76 MET n 1 77 ARG n 1 78 LYS n 1 79 GLU n 1 80 VAL n 1 81 TYR n 1 82 GLN n 1 83 GLN n 1 84 VAL n 1 85 SER n 1 86 SER n 1 87 ARG n 1 88 ILE n 1 89 MET n 1 90 ASN n 1 91 LEU n 1 92 LEU n 1 93 ARG n 1 94 GLU n 1 95 TYR n 1 96 SER n 1 97 GLU n 1 98 LYS n 1 99 ILE n 1 100 GLU n 1 101 ILE n 1 102 ALA n 1 103 SER n 1 104 ILE n 1 105 ASP n 1 106 GLU n 1 107 ALA n 1 108 TYR n 1 109 LEU n 1 110 ASP n 1 111 ILE n 1 112 SER n 1 113 ASP n 1 114 LYS n 1 115 VAL n 1 116 ARG n 1 117 ASP n 1 118 TYR n 1 119 ARG n 1 120 GLU n 1 121 ALA n 1 122 TYR n 1 123 ASN n 1 124 LEU n 1 125 GLY n 1 126 LEU n 1 127 GLU n 1 128 ILE n 1 129 LYS n 1 130 ASN n 1 131 LYS n 1 132 ILE n 1 133 LEU n 1 134 GLU n 1 135 LYS n 1 136 GLU n 1 137 LYS n 1 138 ILE n 1 139 THR n 1 140 VAL n 1 141 THR n 1 142 VAL n 1 143 GLY n 1 144 ILE n 1 145 SER n 1 146 LYS n 1 147 ASN n 1 148 LYS n 1 149 VAL n 1 150 PHE n 1 151 ALA n 1 152 LYS n 1 153 ILE n 1 154 ALA n 1 155 ALA n 1 156 ASP n 1 157 MET n 1 158 ALA n 1 159 LYS n 1 160 PRO n 1 161 ASN n 1 162 GLY n 1 163 ILE n 1 164 LYS n 1 165 VAL n 1 166 ILE n 1 167 ASP n 1 168 ASP n 1 169 GLU n 1 170 GLU n 1 171 VAL n 1 172 LYS n 1 173 ARG n 1 174 LEU n 1 175 ILE n 1 176 ARG n 1 177 GLU n 1 178 LEU n 1 179 ASP n 1 180 ILE n 1 181 ALA n 1 182 ASP n 1 183 VAL n 1 184 PRO n 1 185 GLY n 1 186 ILE n 1 187 GLY n 1 188 ASN n 1 189 ILE n 1 190 THR n 1 191 ALA n 1 192 GLU n 1 193 LYS n 1 194 LEU n 1 195 LYS n 1 196 LYS n 1 197 LEU n 1 198 GLY n 1 199 ILE n 1 200 ASN n 1 201 LYS n 1 202 LEU n 1 203 VAL n 1 204 ASP n 1 205 THR n 1 206 LEU n 1 207 SER n 1 208 ILE n 1 209 GLU n 1 210 PHE n 1 211 ASP n 1 212 LYS n 1 213 LEU n 1 214 LYS n 1 215 GLY n 1 216 MET n 1 217 ILE n 1 218 GLY n 1 219 GLU n 1 220 ALA n 1 221 LYS n 1 222 ALA n 1 223 LYS n 1 224 TYR n 1 225 LEU n 1 226 ILE n 1 227 SER n 1 228 LEU n 1 229 ALA n 1 230 ARG n 1 231 ASP n 1 232 GLU n 1 233 TYR n 1 234 ASN n 1 235 GLU n 1 236 PRO n 1 237 ILE n 1 238 ARG n 1 239 THR n 1 240 ARG n 1 241 VAL n 1 242 ARG n 1 243 LYS n 1 244 SER n 1 245 ILE n 1 246 GLY n 1 247 ARG n 1 248 ILE n 1 249 VAL n 1 250 THR n 1 251 MET n 1 252 LYS n 1 253 ARG n 1 254 ASN n 1 255 SER n 1 256 ARG n 1 257 ASN n 1 258 LEU n 1 259 GLU n 1 260 GLU n 1 261 ILE n 1 262 LYS n 1 263 PRO n 1 264 TYR n 1 265 LEU n 1 266 PHE n 1 267 ARG n 1 268 ALA n 1 269 ILE n 1 270 GLU n 1 271 GLU n 1 272 SER n 1 273 TYR n 1 274 TYR n 1 275 LYS n 1 276 LEU n 1 277 ASP n 1 278 LYS n 1 279 ARG n 1 280 ILE n 1 281 PRO n 1 282 LYS n 1 283 ALA n 1 284 ILE n 1 285 HIS n 1 286 VAL n 1 287 VAL n 1 288 ALA n 1 289 VAL n 1 290 THR n 1 291 GLU n 1 292 ASP n 1 293 LEU n 1 294 ASP n 1 295 ILE n 1 296 VAL n 1 297 SER n 1 298 ARG n 1 299 GLY n 1 300 ARG n 1 301 THR n 1 302 PHE n 1 303 PRO n 1 304 HIS n 1 305 GLY n 1 306 ILE n 1 307 SER n 1 308 LYS n 1 309 GLU n 1 310 THR n 1 311 ALA n 1 312 TYR n 1 313 SER n 1 314 GLU n 1 315 SER n 1 316 VAL n 1 317 LYS n 1 318 LEU n 1 319 LEU n 1 320 GLN n 1 321 LYS n 1 322 ILE n 1 323 LEU n 1 324 GLU n 1 325 GLU n 1 326 ASP n 1 327 GLU n 1 328 ARG n 1 329 LYS n 1 330 ILE n 1 331 ARG n 1 332 ARG n 1 333 ILE n 1 334 GLY n 1 335 VAL n 1 336 ARG n 1 337 PHE n 1 338 SER n 1 339 LYS n 1 340 PHE n 1 341 ILE n 2 1 DG n 2 2 DG n 2 3 DG n 2 4 DG n 2 5 DG n 2 6 DA n 2 7 DA n 2 8 DG n 2 9 DG n 2 10 DA n 2 11 DC n 2 12 DT n 2 13 DC n 3 1 DT n 3 2 DT n 3 3 DC n 3 4 DA n 3 5 DT n 3 6 DG n 3 7 DA n 3 8 DG n 3 9 DT n 3 10 DC n 3 11 DC n 3 12 DT n 3 13 DT n 3 14 DC n 3 15 DC n 3 16 DC n 3 17 DC n 3 18 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'dbh, dpo4, SSO2448' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus solfataricus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DPO42_SULSO Q97W02 1 ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFI ; 1 ? 2 PDB 3PR5 3PR5 3 GGGGGAAGGACTC 1 ? 3 PDB 3PR5 3PR5 2 TTCATGAGTCCTTCCCCC 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3PR5 B 1 ? 341 ? Q97W02 1 ? 341 ? 1 341 2 2 3PR5 T 1 ? 18 ? 3PR5 0 ? 17 ? 0 17 3 3 3PR5 P 1 ? 13 ? 3PR5 1 ? 13 ? 1 13 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3PR5 _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id B _struct_ref_seq_dif.seq_num 12 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q97W02 _struct_ref_seq_dif.db_mon_id TYR _struct_ref_seq_dif.pdbx_seq_db_seq_num 12 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 12 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 ATP non-polymer . "ADENOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O13 P3' 507.181 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3PR5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.63 _exptl_crystal.density_percent_sol 53.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '15% PEG 3350, 0.15M CaAc2, 0.1M Hepes pH 7.0, 2.5% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 298.15K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2007-06-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'GRADED MULTILAYER (OSMIC)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU300' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3PR5 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.4 _reflns.number_obs 19626 _reflns.number_all 19896 _reflns.percent_possible_obs 95.07 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.4 _reflns_shell.d_res_low 2.46 _reflns_shell.percent_possible_all 81.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3PR5 _refine.ls_number_reflns_obs 19626 _refine.ls_number_reflns_all 19896 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.293 _refine.ls_d_res_high 2.400 _refine.ls_percent_reflns_obs 95.07 _refine.ls_R_factor_obs 0.2291 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2275 _refine.ls_R_factor_R_free 0.2647 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.08 _refine.ls_number_reflns_R_free 801 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 10.8202 _refine.aniso_B[2][2] -4.7478 _refine.aniso_B[3][3] -6.0724 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.357 _refine.solvent_model_param_bsol 51.525 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1JX4' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.36 _refine.pdbx_overall_phase_error 26.13 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2737 _refine_hist.pdbx_number_atoms_nucleic_acid 570 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 77 _refine_hist.number_atoms_total 3413 _refine_hist.d_res_high 2.400 _refine_hist.d_res_low 26.293 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.009 ? ? 3441 'X-RAY DIFFRACTION' ? f_angle_d 1.316 ? ? 4748 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.994 ? ? 1376 'X-RAY DIFFRACTION' ? f_chiral_restr 0.081 ? ? 541 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 501 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.4000 2.5503 2964 0.3292 92.00 0.3412 . . 127 . . . . 'X-RAY DIFFRACTION' . 2.5503 2.7470 3054 0.2988 94.00 0.3418 . . 129 . . . . 'X-RAY DIFFRACTION' . 2.7470 3.0230 3130 0.2794 97.00 0.3103 . . 140 . . . . 'X-RAY DIFFRACTION' . 3.0230 3.4597 3208 0.2237 98.00 0.3012 . . 139 . . . . 'X-RAY DIFFRACTION' . 3.4597 4.3556 3271 0.1996 98.00 0.2537 . . 133 . . . . 'X-RAY DIFFRACTION' . 4.3556 26.2946 3198 0.2095 92.00 0.2188 . . 133 . . . . # _struct.entry_id 3PR5 _struct.title 'Dpo4 Y12A mutant incorporating ADP opposite template dT' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PR5 _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'DNA polymerase, TRANSFERASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 6 ? H N N 6 ? I N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 10 ? ASN A 20 ? TYR B 10 ASN B 20 1 ? 11 HELX_P HELX_P2 2 PRO A 21 ? LYS A 24 ? PRO B 21 LYS B 24 5 ? 4 HELX_P HELX_P3 3 ASN A 47 ? LYS A 52 ? ASN B 47 LYS B 52 1 ? 6 HELX_P HELX_P4 4 PRO A 60 ? LEU A 68 ? PRO B 60 LEU B 68 1 ? 9 HELX_P HELX_P5 5 ARG A 77 ? ARG A 93 ? ARG B 77 ARG B 93 1 ? 17 HELX_P HELX_P6 6 ASP A 117 ? LYS A 137 ? ASP B 117 LYS B 137 1 ? 21 HELX_P HELX_P7 7 ASN A 147 ? LYS A 159 ? ASN B 147 LYS B 159 1 ? 13 HELX_P HELX_P8 8 ASP A 167 ? LEU A 178 ? ASP B 167 LEU B 178 1 ? 12 HELX_P HELX_P9 9 ASP A 179 ? VAL A 183 ? ASP B 179 VAL B 183 5 ? 5 HELX_P HELX_P10 10 GLY A 187 ? LYS A 196 ? GLY B 187 LYS B 196 1 ? 10 HELX_P HELX_P11 11 LEU A 202 ? SER A 207 ? LEU B 202 SER B 207 5 ? 6 HELX_P HELX_P12 12 GLU A 209 ? GLY A 218 ? GLU B 209 GLY B 218 1 ? 10 HELX_P HELX_P13 13 GLY A 218 ? ARG A 230 ? GLY B 218 ARG B 230 1 ? 13 HELX_P HELX_P14 14 ASN A 257 ? ASP A 277 ? ASN B 257 ASP B 277 1 ? 21 HELX_P HELX_P15 15 SER A 307 ? GLU A 325 ? SER B 307 GLU B 325 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 7 OD1 ? ? ? 1_555 E CA . CA ? ? B ASP 7 B CA 343 1_555 ? ? ? ? ? ? ? 2.397 ? ? metalc2 metalc ? ? A PHE 8 O ? ? ? 1_555 E CA . CA ? ? B PHE 8 B CA 343 1_555 ? ? ? ? ? ? ? 2.391 ? ? metalc3 metalc ? ? A ASP 105 OD2 ? ? ? 1_555 E CA . CA ? ? B ASP 105 B CA 343 1_555 ? ? ? ? ? ? ? 2.613 ? ? metalc4 metalc ? ? A ALA 181 O ? ? ? 1_555 D CA . CA ? ? B ALA 181 B CA 342 1_555 ? ? ? ? ? ? ? 2.525 ? ? metalc5 metalc ? ? A ILE 186 O ? ? ? 1_555 D CA . CA ? ? B ILE 186 B CA 342 1_555 ? ? ? ? ? ? ? 2.686 ? ? metalc6 metalc ? ? E CA . CA ? ? ? 1_555 F ATP . O1A ? ? B CA 343 B ATP 344 1_555 ? ? ? ? ? ? ? 2.447 ? ? metalc7 metalc ? ? E CA . CA ? ? ? 1_555 F ATP . O1B ? ? B CA 343 B ATP 344 1_555 ? ? ? ? ? ? ? 2.746 ? ? metalc8 metalc ? ? E CA . CA ? ? ? 1_555 G HOH . O ? ? B CA 343 B HOH 398 1_555 ? ? ? ? ? ? ? 2.838 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 18 N3 ? ? P DG 1 T DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 18 O2 ? ? P DG 1 T DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 18 N4 ? ? P DG 1 T DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 17 N3 ? ? P DG 2 T DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 17 O2 ? ? P DG 2 T DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 17 N4 ? ? P DG 2 T DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 16 N3 ? ? P DG 3 T DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 16 O2 ? ? P DG 3 T DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 16 N4 ? ? P DG 3 T DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 15 N3 ? ? P DG 4 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 15 O2 ? ? P DG 4 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 15 N4 ? ? P DG 4 T DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 14 N3 ? ? P DG 5 T DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 14 O2 ? ? P DG 5 T DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 14 N4 ? ? P DG 5 T DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 13 N3 ? ? P DA 6 T DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 13 O4 ? ? P DA 6 T DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 12 N3 ? ? P DA 7 T DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 12 O4 ? ? P DA 7 T DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 11 N3 ? ? P DG 8 T DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 11 O2 ? ? P DG 8 T DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 11 N4 ? ? P DG 8 T DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 10 N3 ? ? P DG 9 T DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 10 O2 ? ? P DG 9 T DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 10 N4 ? ? P DG 9 T DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 9 N3 ? ? P DA 10 T DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 9 O4 ? ? P DA 10 T DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 8 N1 ? ? P DC 11 T DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 8 O6 ? ? P DC 11 T DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 8 N2 ? ? P DC 11 T DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 7 N1 ? ? P DT 12 T DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 7 N6 ? ? P DT 12 T DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 6 N1 ? ? P DC 13 T DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 6 O6 ? ? P DC 13 T DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 6 N2 ? ? P DC 13 T DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 159 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 159 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 160 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 160 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 4.59 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 99 ? SER A 103 ? ILE B 99 SER B 103 A 2 GLU A 106 ? ASP A 110 ? GLU B 106 ASP B 110 A 3 VAL A 3 ? PHE A 8 ? VAL B 3 PHE B 8 A 4 VAL A 140 ? SER A 145 ? VAL B 140 SER B 145 A 5 ILE A 163 ? VAL A 165 ? ILE B 163 VAL B 165 B 1 GLY A 41 ? ALA A 46 ? GLY B 41 ALA B 46 B 2 VAL A 28 ? PHE A 33 ? VAL B 28 PHE B 33 B 3 VAL A 72 ? PRO A 75 ? VAL B 72 PRO B 75 C 1 SER A 244 ? SER A 255 ? SER B 244 SER B 255 C 2 ILE A 330 ? PHE A 340 ? ILE B 330 PHE B 340 C 3 PRO A 281 ? THR A 290 ? PRO B 281 THR B 290 C 4 ILE A 295 ? THR A 301 ? ILE B 295 THR B 301 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 100 ? N GLU B 100 O TYR A 108 ? O TYR B 108 A 2 3 O ALA A 107 ? O ALA B 107 N VAL A 6 ? N VAL B 6 A 3 4 N PHE A 5 ? N PHE B 5 O GLY A 143 ? O GLY B 143 A 4 5 N ILE A 144 ? N ILE B 144 O LYS A 164 ? O LYS B 164 B 1 2 O ALA A 44 ? O ALA B 44 N VAL A 30 ? N VAL B 30 B 2 3 N CYS A 31 ? N CYS B 31 O LEU A 74 ? O LEU B 74 C 1 2 N SER A 255 ? N SER B 255 O ILE A 330 ? O ILE B 330 C 2 3 O ARG A 331 ? O ARG B 331 N VAL A 289 ? N VAL B 289 C 3 4 N VAL A 286 ? N VAL B 286 O ARG A 298 ? O ARG B 298 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B CA 342 ? 2 'BINDING SITE FOR RESIDUE CA B 342' AC2 Software B CA 343 ? 5 'BINDING SITE FOR RESIDUE CA B 343' AC3 Software B ATP 344 ? 18 'BINDING SITE FOR RESIDUE ATP B 344' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ALA A 181 ? ALA B 181 . ? 1_555 ? 2 AC1 2 ILE A 186 ? ILE B 186 . ? 1_555 ? 3 AC2 5 ASP A 7 ? ASP B 7 . ? 1_555 ? 4 AC2 5 PHE A 8 ? PHE B 8 . ? 1_555 ? 5 AC2 5 ASP A 105 ? ASP B 105 . ? 1_555 ? 6 AC2 5 ATP F . ? ATP B 344 . ? 1_555 ? 7 AC2 5 HOH G . ? HOH B 398 . ? 1_555 ? 8 AC3 18 ASP A 7 ? ASP B 7 . ? 1_555 ? 9 AC3 18 PHE A 8 ? PHE B 8 . ? 1_555 ? 10 AC3 18 TYR A 10 ? TYR B 10 . ? 1_555 ? 11 AC3 18 PHE A 11 ? PHE B 11 . ? 1_555 ? 12 AC3 18 ALA A 12 ? ALA B 12 . ? 1_555 ? 13 AC3 18 ALA A 44 ? ALA B 44 . ? 1_555 ? 14 AC3 18 THR A 45 ? THR B 45 . ? 1_555 ? 15 AC3 18 TYR A 48 ? TYR B 48 . ? 1_555 ? 16 AC3 18 ARG A 51 ? ARG B 51 . ? 1_555 ? 17 AC3 18 ALA A 57 ? ALA B 57 . ? 1_555 ? 18 AC3 18 ASP A 105 ? ASP B 105 . ? 1_555 ? 19 AC3 18 LYS A 159 ? LYS B 159 . ? 1_555 ? 20 AC3 18 CA E . ? CA B 343 . ? 1_555 ? 21 AC3 18 HOH G . ? HOH B 346 . ? 1_555 ? 22 AC3 18 HOH G . ? HOH B 398 . ? 1_555 ? 23 AC3 18 DC B 13 ? DC P 13 . ? 1_555 ? 24 AC3 18 DT C 5 ? DT T 4 . ? 1_555 ? 25 AC3 18 DG C 6 ? DG T 5 . ? 1_555 ? # _database_PDB_matrix.entry_id 3PR5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3PR5 _atom_sites.fract_transf_matrix[1][1] 0.010459 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009805 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019125 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET B . n A 1 2 ILE 2 2 2 ILE ILE B . n A 1 3 VAL 3 3 3 VAL VAL B . n A 1 4 LEU 4 4 4 LEU LEU B . n A 1 5 PHE 5 5 5 PHE PHE B . n A 1 6 VAL 6 6 6 VAL VAL B . n A 1 7 ASP 7 7 7 ASP ASP B . n A 1 8 PHE 8 8 8 PHE PHE B . n A 1 9 ASP 9 9 9 ASP ASP B . n A 1 10 TYR 10 10 10 TYR TYR B . n A 1 11 PHE 11 11 11 PHE PHE B . n A 1 12 ALA 12 12 12 ALA ALA B . n A 1 13 ALA 13 13 13 ALA ALA B . n A 1 14 GLN 14 14 14 GLN GLN B . n A 1 15 VAL 15 15 15 VAL VAL B . n A 1 16 GLU 16 16 16 GLU GLU B . n A 1 17 GLU 17 17 17 GLU GLU B . n A 1 18 VAL 18 18 18 VAL VAL B . n A 1 19 LEU 19 19 19 LEU LEU B . n A 1 20 ASN 20 20 20 ASN ASN B . n A 1 21 PRO 21 21 21 PRO PRO B . n A 1 22 SER 22 22 22 SER SER B . n A 1 23 LEU 23 23 23 LEU LEU B . n A 1 24 LYS 24 24 24 LYS LYS B . n A 1 25 GLY 25 25 25 GLY GLY B . n A 1 26 LYS 26 26 26 LYS LYS B . n A 1 27 PRO 27 27 27 PRO PRO B . n A 1 28 VAL 28 28 28 VAL VAL B . n A 1 29 VAL 29 29 29 VAL VAL B . n A 1 30 VAL 30 30 30 VAL VAL B . n A 1 31 CYS 31 31 31 CYS CYS B . n A 1 32 VAL 32 32 32 VAL VAL B . n A 1 33 PHE 33 33 33 PHE PHE B . n A 1 34 SER 34 34 34 SER SER B . n A 1 35 GLY 35 35 35 GLY GLY B . n A 1 36 ARG 36 36 36 ARG ARG B . n A 1 37 PHE 37 37 37 PHE PHE B . n A 1 38 GLU 38 38 38 GLU GLU B . n A 1 39 ASP 39 39 39 ASP ASP B . n A 1 40 SER 40 40 40 SER SER B . n A 1 41 GLY 41 41 41 GLY GLY B . n A 1 42 ALA 42 42 42 ALA ALA B . n A 1 43 VAL 43 43 43 VAL VAL B . n A 1 44 ALA 44 44 44 ALA ALA B . n A 1 45 THR 45 45 45 THR THR B . n A 1 46 ALA 46 46 46 ALA ALA B . n A 1 47 ASN 47 47 47 ASN ASN B . n A 1 48 TYR 48 48 48 TYR TYR B . n A 1 49 GLU 49 49 49 GLU GLU B . n A 1 50 ALA 50 50 50 ALA ALA B . n A 1 51 ARG 51 51 51 ARG ARG B . n A 1 52 LYS 52 52 52 LYS LYS B . n A 1 53 PHE 53 53 53 PHE PHE B . n A 1 54 GLY 54 54 54 GLY GLY B . n A 1 55 VAL 55 55 55 VAL VAL B . n A 1 56 LYS 56 56 56 LYS LYS B . n A 1 57 ALA 57 57 57 ALA ALA B . n A 1 58 GLY 58 58 58 GLY GLY B . n A 1 59 ILE 59 59 59 ILE ILE B . n A 1 60 PRO 60 60 60 PRO PRO B . n A 1 61 ILE 61 61 61 ILE ILE B . n A 1 62 VAL 62 62 62 VAL VAL B . n A 1 63 GLU 63 63 63 GLU GLU B . n A 1 64 ALA 64 64 64 ALA ALA B . n A 1 65 LYS 65 65 65 LYS LYS B . n A 1 66 LYS 66 66 66 LYS LYS B . n A 1 67 ILE 67 67 67 ILE ILE B . n A 1 68 LEU 68 68 68 LEU LEU B . n A 1 69 PRO 69 69 69 PRO PRO B . n A 1 70 ASN 70 70 70 ASN ASN B . n A 1 71 ALA 71 71 71 ALA ALA B . n A 1 72 VAL 72 72 72 VAL VAL B . n A 1 73 TYR 73 73 73 TYR TYR B . n A 1 74 LEU 74 74 74 LEU LEU B . n A 1 75 PRO 75 75 75 PRO PRO B . n A 1 76 MET 76 76 76 MET MET B . n A 1 77 ARG 77 77 77 ARG ARG B . n A 1 78 LYS 78 78 78 LYS LYS B . n A 1 79 GLU 79 79 79 GLU GLU B . n A 1 80 VAL 80 80 80 VAL VAL B . n A 1 81 TYR 81 81 81 TYR TYR B . n A 1 82 GLN 82 82 82 GLN GLN B . n A 1 83 GLN 83 83 83 GLN GLN B . n A 1 84 VAL 84 84 84 VAL VAL B . n A 1 85 SER 85 85 85 SER SER B . n A 1 86 SER 86 86 86 SER SER B . n A 1 87 ARG 87 87 87 ARG ARG B . n A 1 88 ILE 88 88 88 ILE ILE B . n A 1 89 MET 89 89 89 MET MET B . n A 1 90 ASN 90 90 90 ASN ASN B . n A 1 91 LEU 91 91 91 LEU LEU B . n A 1 92 LEU 92 92 92 LEU LEU B . n A 1 93 ARG 93 93 93 ARG ARG B . n A 1 94 GLU 94 94 94 GLU GLU B . n A 1 95 TYR 95 95 95 TYR TYR B . n A 1 96 SER 96 96 96 SER SER B . n A 1 97 GLU 97 97 97 GLU GLU B . n A 1 98 LYS 98 98 98 LYS LYS B . n A 1 99 ILE 99 99 99 ILE ILE B . n A 1 100 GLU 100 100 100 GLU GLU B . n A 1 101 ILE 101 101 101 ILE ILE B . n A 1 102 ALA 102 102 102 ALA ALA B . n A 1 103 SER 103 103 103 SER SER B . n A 1 104 ILE 104 104 104 ILE ILE B . n A 1 105 ASP 105 105 105 ASP ASP B . n A 1 106 GLU 106 106 106 GLU GLU B . n A 1 107 ALA 107 107 107 ALA ALA B . n A 1 108 TYR 108 108 108 TYR TYR B . n A 1 109 LEU 109 109 109 LEU LEU B . n A 1 110 ASP 110 110 110 ASP ASP B . n A 1 111 ILE 111 111 111 ILE ILE B . n A 1 112 SER 112 112 112 SER SER B . n A 1 113 ASP 113 113 113 ASP ASP B . n A 1 114 LYS 114 114 114 LYS LYS B . n A 1 115 VAL 115 115 115 VAL VAL B . n A 1 116 ARG 116 116 116 ARG ARG B . n A 1 117 ASP 117 117 117 ASP ASP B . n A 1 118 TYR 118 118 118 TYR TYR B . n A 1 119 ARG 119 119 119 ARG ARG B . n A 1 120 GLU 120 120 120 GLU GLU B . n A 1 121 ALA 121 121 121 ALA ALA B . n A 1 122 TYR 122 122 122 TYR TYR B . n A 1 123 ASN 123 123 123 ASN ASN B . n A 1 124 LEU 124 124 124 LEU LEU B . n A 1 125 GLY 125 125 125 GLY GLY B . n A 1 126 LEU 126 126 126 LEU LEU B . n A 1 127 GLU 127 127 127 GLU GLU B . n A 1 128 ILE 128 128 128 ILE ILE B . n A 1 129 LYS 129 129 129 LYS LYS B . n A 1 130 ASN 130 130 130 ASN ASN B . n A 1 131 LYS 131 131 131 LYS LYS B . n A 1 132 ILE 132 132 132 ILE ILE B . n A 1 133 LEU 133 133 133 LEU LEU B . n A 1 134 GLU 134 134 134 GLU GLU B . n A 1 135 LYS 135 135 135 LYS LYS B . n A 1 136 GLU 136 136 136 GLU GLU B . n A 1 137 LYS 137 137 137 LYS LYS B . n A 1 138 ILE 138 138 138 ILE ILE B . n A 1 139 THR 139 139 139 THR THR B . n A 1 140 VAL 140 140 140 VAL VAL B . n A 1 141 THR 141 141 141 THR THR B . n A 1 142 VAL 142 142 142 VAL VAL B . n A 1 143 GLY 143 143 143 GLY GLY B . n A 1 144 ILE 144 144 144 ILE ILE B . n A 1 145 SER 145 145 145 SER SER B . n A 1 146 LYS 146 146 146 LYS LYS B . n A 1 147 ASN 147 147 147 ASN ASN B . n A 1 148 LYS 148 148 148 LYS LYS B . n A 1 149 VAL 149 149 149 VAL VAL B . n A 1 150 PHE 150 150 150 PHE PHE B . n A 1 151 ALA 151 151 151 ALA ALA B . n A 1 152 LYS 152 152 152 LYS LYS B . n A 1 153 ILE 153 153 153 ILE ILE B . n A 1 154 ALA 154 154 154 ALA ALA B . n A 1 155 ALA 155 155 155 ALA ALA B . n A 1 156 ASP 156 156 156 ASP ASP B . n A 1 157 MET 157 157 157 MET MET B . n A 1 158 ALA 158 158 158 ALA ALA B . n A 1 159 LYS 159 159 159 LYS LYS B . n A 1 160 PRO 160 160 160 PRO PRO B . n A 1 161 ASN 161 161 161 ASN ASN B . n A 1 162 GLY 162 162 162 GLY GLY B . n A 1 163 ILE 163 163 163 ILE ILE B . n A 1 164 LYS 164 164 164 LYS LYS B . n A 1 165 VAL 165 165 165 VAL VAL B . n A 1 166 ILE 166 166 166 ILE ILE B . n A 1 167 ASP 167 167 167 ASP ASP B . n A 1 168 ASP 168 168 168 ASP ASP B . n A 1 169 GLU 169 169 169 GLU GLU B . n A 1 170 GLU 170 170 170 GLU GLU B . n A 1 171 VAL 171 171 171 VAL VAL B . n A 1 172 LYS 172 172 172 LYS LYS B . n A 1 173 ARG 173 173 173 ARG ARG B . n A 1 174 LEU 174 174 174 LEU LEU B . n A 1 175 ILE 175 175 175 ILE ILE B . n A 1 176 ARG 176 176 176 ARG ARG B . n A 1 177 GLU 177 177 177 GLU GLU B . n A 1 178 LEU 178 178 178 LEU LEU B . n A 1 179 ASP 179 179 179 ASP ASP B . n A 1 180 ILE 180 180 180 ILE ILE B . n A 1 181 ALA 181 181 181 ALA ALA B . n A 1 182 ASP 182 182 182 ASP ASP B . n A 1 183 VAL 183 183 183 VAL VAL B . n A 1 184 PRO 184 184 184 PRO PRO B . n A 1 185 GLY 185 185 185 GLY GLY B . n A 1 186 ILE 186 186 186 ILE ILE B . n A 1 187 GLY 187 187 187 GLY GLY B . n A 1 188 ASN 188 188 188 ASN ASN B . n A 1 189 ILE 189 189 189 ILE ILE B . n A 1 190 THR 190 190 190 THR THR B . n A 1 191 ALA 191 191 191 ALA ALA B . n A 1 192 GLU 192 192 192 GLU GLU B . n A 1 193 LYS 193 193 193 LYS LYS B . n A 1 194 LEU 194 194 194 LEU LEU B . n A 1 195 LYS 195 195 195 LYS LYS B . n A 1 196 LYS 196 196 196 LYS LYS B . n A 1 197 LEU 197 197 197 LEU LEU B . n A 1 198 GLY 198 198 198 GLY GLY B . n A 1 199 ILE 199 199 199 ILE ILE B . n A 1 200 ASN 200 200 200 ASN ASN B . n A 1 201 LYS 201 201 201 LYS LYS B . n A 1 202 LEU 202 202 202 LEU LEU B . n A 1 203 VAL 203 203 203 VAL VAL B . n A 1 204 ASP 204 204 204 ASP ASP B . n A 1 205 THR 205 205 205 THR THR B . n A 1 206 LEU 206 206 206 LEU LEU B . n A 1 207 SER 207 207 207 SER SER B . n A 1 208 ILE 208 208 208 ILE ILE B . n A 1 209 GLU 209 209 209 GLU GLU B . n A 1 210 PHE 210 210 210 PHE PHE B . n A 1 211 ASP 211 211 211 ASP ASP B . n A 1 212 LYS 212 212 212 LYS LYS B . n A 1 213 LEU 213 213 213 LEU LEU B . n A 1 214 LYS 214 214 214 LYS LYS B . n A 1 215 GLY 215 215 215 GLY GLY B . n A 1 216 MET 216 216 216 MET MET B . n A 1 217 ILE 217 217 217 ILE ILE B . n A 1 218 GLY 218 218 218 GLY GLY B . n A 1 219 GLU 219 219 219 GLU GLU B . n A 1 220 ALA 220 220 220 ALA ALA B . n A 1 221 LYS 221 221 221 LYS LYS B . n A 1 222 ALA 222 222 222 ALA ALA B . n A 1 223 LYS 223 223 223 LYS LYS B . n A 1 224 TYR 224 224 224 TYR TYR B . n A 1 225 LEU 225 225 225 LEU LEU B . n A 1 226 ILE 226 226 226 ILE ILE B . n A 1 227 SER 227 227 227 SER SER B . n A 1 228 LEU 228 228 228 LEU LEU B . n A 1 229 ALA 229 229 229 ALA ALA B . n A 1 230 ARG 230 230 230 ARG ARG B . n A 1 231 ASP 231 231 231 ASP ASP B . n A 1 232 GLU 232 232 232 GLU GLU B . n A 1 233 TYR 233 233 233 TYR TYR B . n A 1 234 ASN 234 234 234 ASN ASN B . n A 1 235 GLU 235 235 235 GLU GLU B . n A 1 236 PRO 236 236 236 PRO PRO B . n A 1 237 ILE 237 237 237 ILE ILE B . n A 1 238 ARG 238 238 238 ARG ARG B . n A 1 239 THR 239 239 239 THR THR B . n A 1 240 ARG 240 240 240 ARG ARG B . n A 1 241 VAL 241 241 241 VAL VAL B . n A 1 242 ARG 242 242 242 ARG ARG B . n A 1 243 LYS 243 243 243 LYS LYS B . n A 1 244 SER 244 244 244 SER SER B . n A 1 245 ILE 245 245 245 ILE ILE B . n A 1 246 GLY 246 246 246 GLY GLY B . n A 1 247 ARG 247 247 247 ARG ARG B . n A 1 248 ILE 248 248 248 ILE ILE B . n A 1 249 VAL 249 249 249 VAL VAL B . n A 1 250 THR 250 250 250 THR THR B . n A 1 251 MET 251 251 251 MET MET B . n A 1 252 LYS 252 252 252 LYS LYS B . n A 1 253 ARG 253 253 253 ARG ARG B . n A 1 254 ASN 254 254 254 ASN ASN B . n A 1 255 SER 255 255 255 SER SER B . n A 1 256 ARG 256 256 256 ARG ARG B . n A 1 257 ASN 257 257 257 ASN ASN B . n A 1 258 LEU 258 258 258 LEU LEU B . n A 1 259 GLU 259 259 259 GLU GLU B . n A 1 260 GLU 260 260 260 GLU GLU B . n A 1 261 ILE 261 261 261 ILE ILE B . n A 1 262 LYS 262 262 262 LYS LYS B . n A 1 263 PRO 263 263 263 PRO PRO B . n A 1 264 TYR 264 264 264 TYR TYR B . n A 1 265 LEU 265 265 265 LEU LEU B . n A 1 266 PHE 266 266 266 PHE PHE B . n A 1 267 ARG 267 267 267 ARG ARG B . n A 1 268 ALA 268 268 268 ALA ALA B . n A 1 269 ILE 269 269 269 ILE ILE B . n A 1 270 GLU 270 270 270 GLU GLU B . n A 1 271 GLU 271 271 271 GLU GLU B . n A 1 272 SER 272 272 272 SER SER B . n A 1 273 TYR 273 273 273 TYR TYR B . n A 1 274 TYR 274 274 274 TYR TYR B . n A 1 275 LYS 275 275 275 LYS LYS B . n A 1 276 LEU 276 276 276 LEU LEU B . n A 1 277 ASP 277 277 277 ASP ASP B . n A 1 278 LYS 278 278 278 LYS LYS B . n A 1 279 ARG 279 279 279 ARG ARG B . n A 1 280 ILE 280 280 280 ILE ILE B . n A 1 281 PRO 281 281 281 PRO PRO B . n A 1 282 LYS 282 282 282 LYS LYS B . n A 1 283 ALA 283 283 283 ALA ALA B . n A 1 284 ILE 284 284 284 ILE ILE B . n A 1 285 HIS 285 285 285 HIS HIS B . n A 1 286 VAL 286 286 286 VAL VAL B . n A 1 287 VAL 287 287 287 VAL VAL B . n A 1 288 ALA 288 288 288 ALA ALA B . n A 1 289 VAL 289 289 289 VAL VAL B . n A 1 290 THR 290 290 290 THR THR B . n A 1 291 GLU 291 291 291 GLU GLU B . n A 1 292 ASP 292 292 292 ASP ASP B . n A 1 293 LEU 293 293 293 LEU LEU B . n A 1 294 ASP 294 294 294 ASP ASP B . n A 1 295 ILE 295 295 295 ILE ILE B . n A 1 296 VAL 296 296 296 VAL VAL B . n A 1 297 SER 297 297 297 SER SER B . n A 1 298 ARG 298 298 298 ARG ARG B . n A 1 299 GLY 299 299 299 GLY GLY B . n A 1 300 ARG 300 300 300 ARG ARG B . n A 1 301 THR 301 301 301 THR THR B . n A 1 302 PHE 302 302 302 PHE PHE B . n A 1 303 PRO 303 303 303 PRO PRO B . n A 1 304 HIS 304 304 304 HIS HIS B . n A 1 305 GLY 305 305 305 GLY GLY B . n A 1 306 ILE 306 306 306 ILE ILE B . n A 1 307 SER 307 307 307 SER SER B . n A 1 308 LYS 308 308 308 LYS LYS B . n A 1 309 GLU 309 309 309 GLU GLU B . n A 1 310 THR 310 310 310 THR THR B . n A 1 311 ALA 311 311 311 ALA ALA B . n A 1 312 TYR 312 312 312 TYR TYR B . n A 1 313 SER 313 313 313 SER SER B . n A 1 314 GLU 314 314 314 GLU GLU B . n A 1 315 SER 315 315 315 SER SER B . n A 1 316 VAL 316 316 316 VAL VAL B . n A 1 317 LYS 317 317 317 LYS LYS B . n A 1 318 LEU 318 318 318 LEU LEU B . n A 1 319 LEU 319 319 319 LEU LEU B . n A 1 320 GLN 320 320 320 GLN GLN B . n A 1 321 LYS 321 321 321 LYS LYS B . n A 1 322 ILE 322 322 322 ILE ILE B . n A 1 323 LEU 323 323 323 LEU LEU B . n A 1 324 GLU 324 324 324 GLU GLU B . n A 1 325 GLU 325 325 325 GLU GLU B . n A 1 326 ASP 326 326 326 ASP ASP B . n A 1 327 GLU 327 327 327 GLU GLU B . n A 1 328 ARG 328 328 328 ARG ARG B . n A 1 329 LYS 329 329 329 LYS LYS B . n A 1 330 ILE 330 330 330 ILE ILE B . n A 1 331 ARG 331 331 331 ARG ARG B . n A 1 332 ARG 332 332 332 ARG ARG B . n A 1 333 ILE 333 333 333 ILE ILE B . n A 1 334 GLY 334 334 334 GLY GLY B . n A 1 335 VAL 335 335 335 VAL VAL B . n A 1 336 ARG 336 336 336 ARG ARG B . n A 1 337 PHE 337 337 337 PHE PHE B . n A 1 338 SER 338 338 338 SER SER B . n A 1 339 LYS 339 339 339 LYS LYS B . n A 1 340 PHE 340 340 340 PHE PHE B . n A 1 341 ILE 341 341 341 ILE ILE B . n B 2 1 DG 1 1 1 DG DG P . n B 2 2 DG 2 2 2 DG DG P . n B 2 3 DG 3 3 3 DG DG P . n B 2 4 DG 4 4 4 DG DG P . n B 2 5 DG 5 5 5 DG DG P . n B 2 6 DA 6 6 6 DA DA P . n B 2 7 DA 7 7 7 DA DA P . n B 2 8 DG 8 8 8 DG DG P . n B 2 9 DG 9 9 9 DG DG P . n B 2 10 DA 10 10 10 DA DA P . n B 2 11 DC 11 11 11 DC DC P . n B 2 12 DT 12 12 12 DT DT P . n B 2 13 DC 13 13 13 DC DC P . n C 3 1 DT 1 0 ? ? ? T . n C 3 2 DT 2 1 ? ? ? T . n C 3 3 DC 3 2 ? ? ? T . n C 3 4 DA 4 3 3 DA DA T . n C 3 5 DT 5 4 4 DT DT T . n C 3 6 DG 6 5 5 DG DG T . n C 3 7 DA 7 6 6 DA DA T . n C 3 8 DG 8 7 7 DG DG T . n C 3 9 DT 9 8 8 DT DT T . n C 3 10 DC 10 9 9 DC DC T . n C 3 11 DC 11 10 10 DC DC T . n C 3 12 DT 12 11 11 DT DT T . n C 3 13 DT 13 12 12 DT DT T . n C 3 14 DC 14 13 13 DC DC T . n C 3 15 DC 15 14 14 DC DC T . n C 3 16 DC 16 15 15 DC DC T . n C 3 17 DC 17 16 16 DC DC T . n C 3 18 DC 18 17 17 DC DC T . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA 1 342 1 CA CA B . E 4 CA 1 343 1 CA CA B . F 5 ATP 1 344 1 ATP ATP B . G 6 HOH 1 345 1 HOH HOH B . G 6 HOH 2 346 4 HOH HOH B . G 6 HOH 3 347 5 HOH HOH B . G 6 HOH 4 348 6 HOH HOH B . G 6 HOH 5 349 7 HOH HOH B . G 6 HOH 6 350 9 HOH HOH B . G 6 HOH 7 351 11 HOH HOH B . G 6 HOH 8 352 18 HOH HOH B . G 6 HOH 9 353 28 HOH HOH B . G 6 HOH 10 354 30 HOH HOH B . G 6 HOH 11 355 44 HOH HOH B . G 6 HOH 12 356 48 HOH HOH B . G 6 HOH 13 357 50 HOH HOH B . G 6 HOH 14 358 51 HOH HOH B . G 6 HOH 15 359 53 HOH HOH B . G 6 HOH 16 360 56 HOH HOH B . G 6 HOH 17 361 57 HOH HOH B . G 6 HOH 18 362 58 HOH HOH B . G 6 HOH 19 363 60 HOH HOH B . G 6 HOH 20 364 61 HOH HOH B . G 6 HOH 21 365 62 HOH HOH B . G 6 HOH 22 366 63 HOH HOH B . G 6 HOH 23 367 64 HOH HOH B . G 6 HOH 24 368 66 HOH HOH B . G 6 HOH 25 369 69 HOH HOH B . G 6 HOH 26 370 74 HOH HOH B . G 6 HOH 27 371 75 HOH HOH B . G 6 HOH 28 372 77 HOH HOH B . G 6 HOH 29 373 78 HOH HOH B . G 6 HOH 30 374 79 HOH HOH B . G 6 HOH 31 375 81 HOH HOH B . G 6 HOH 32 376 84 HOH HOH B . G 6 HOH 33 377 85 HOH HOH B . G 6 HOH 34 378 86 HOH HOH B . G 6 HOH 35 379 87 HOH HOH B . G 6 HOH 36 380 91 HOH HOH B . G 6 HOH 37 381 93 HOH HOH B . G 6 HOH 38 382 97 HOH HOH B . G 6 HOH 39 383 98 HOH HOH B . G 6 HOH 40 384 102 HOH HOH B . G 6 HOH 41 385 103 HOH HOH B . G 6 HOH 42 386 105 HOH HOH B . G 6 HOH 43 387 106 HOH HOH B . G 6 HOH 44 388 108 HOH HOH B . G 6 HOH 45 389 109 HOH HOH B . G 6 HOH 46 390 110 HOH HOH B . G 6 HOH 47 391 114 HOH HOH B . G 6 HOH 48 392 115 HOH HOH B . G 6 HOH 49 393 116 HOH HOH B . G 6 HOH 50 394 119 HOH HOH B . G 6 HOH 51 395 121 HOH HOH B . G 6 HOH 52 396 4 HOH HOH B . G 6 HOH 53 397 5 HOH HOH B . G 6 HOH 54 398 8 HOH HOH B . G 6 HOH 55 399 9 HOH HOH B . G 6 HOH 56 400 10 HOH HOH B . G 6 HOH 57 401 11 HOH HOH B . G 6 HOH 58 402 15 HOH HOH B . H 6 HOH 1 14 14 HOH HOH P . H 6 HOH 2 15 8 HOH HOH P . H 6 HOH 3 16 1 HOH HOH P . H 6 HOH 4 17 12 HOH HOH P . H 6 HOH 5 22 22 HOH HOH P . H 6 HOH 6 52 52 HOH HOH P . H 6 HOH 7 65 65 HOH HOH P . H 6 HOH 8 92 92 HOH HOH P . H 6 HOH 9 107 107 HOH HOH P . H 6 HOH 10 113 113 HOH HOH P . I 6 HOH 1 18 2 HOH HOH T . I 6 HOH 2 19 12 HOH HOH T . I 6 HOH 3 20 2 HOH HOH T . I 6 HOH 4 21 13 HOH HOH T . I 6 HOH 5 54 54 HOH HOH T . I 6 HOH 6 76 76 HOH HOH T . I 6 HOH 7 82 82 HOH HOH T . I 6 HOH 8 99 99 HOH HOH T . I 6 HOH 9 112 112 HOH HOH T . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5280 ? 1 MORE -59 ? 1 'SSA (A^2)' 19900 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 7 ? B ASP 7 ? 1_555 CA ? E CA . ? B CA 343 ? 1_555 O ? A PHE 8 ? B PHE 8 ? 1_555 86.7 ? 2 OD1 ? A ASP 7 ? B ASP 7 ? 1_555 CA ? E CA . ? B CA 343 ? 1_555 OD2 ? A ASP 105 ? B ASP 105 ? 1_555 100.7 ? 3 O ? A PHE 8 ? B PHE 8 ? 1_555 CA ? E CA . ? B CA 343 ? 1_555 OD2 ? A ASP 105 ? B ASP 105 ? 1_555 84.6 ? 4 OD1 ? A ASP 7 ? B ASP 7 ? 1_555 CA ? E CA . ? B CA 343 ? 1_555 O1A ? F ATP . ? B ATP 344 ? 1_555 177.6 ? 5 O ? A PHE 8 ? B PHE 8 ? 1_555 CA ? E CA . ? B CA 343 ? 1_555 O1A ? F ATP . ? B ATP 344 ? 1_555 92.4 ? 6 OD2 ? A ASP 105 ? B ASP 105 ? 1_555 CA ? E CA . ? B CA 343 ? 1_555 O1A ? F ATP . ? B ATP 344 ? 1_555 77.0 ? 7 OD1 ? A ASP 7 ? B ASP 7 ? 1_555 CA ? E CA . ? B CA 343 ? 1_555 O1B ? F ATP . ? B ATP 344 ? 1_555 89.8 ? 8 O ? A PHE 8 ? B PHE 8 ? 1_555 CA ? E CA . ? B CA 343 ? 1_555 O1B ? F ATP . ? B ATP 344 ? 1_555 138.0 ? 9 OD2 ? A ASP 105 ? B ASP 105 ? 1_555 CA ? E CA . ? B CA 343 ? 1_555 O1B ? F ATP . ? B ATP 344 ? 1_555 137.0 ? 10 O1A ? F ATP . ? B ATP 344 ? 1_555 CA ? E CA . ? B CA 343 ? 1_555 O1B ? F ATP . ? B ATP 344 ? 1_555 92.4 ? 11 OD1 ? A ASP 7 ? B ASP 7 ? 1_555 CA ? E CA . ? B CA 343 ? 1_555 O ? G HOH . ? B HOH 398 ? 1_555 77.3 ? 12 O ? A PHE 8 ? B PHE 8 ? 1_555 CA ? E CA . ? B CA 343 ? 1_555 O ? G HOH . ? B HOH 398 ? 1_555 152.0 ? 13 OD2 ? A ASP 105 ? B ASP 105 ? 1_555 CA ? E CA . ? B CA 343 ? 1_555 O ? G HOH . ? B HOH 398 ? 1_555 76.2 ? 14 O1A ? F ATP . ? B ATP 344 ? 1_555 CA ? E CA . ? B CA 343 ? 1_555 O ? G HOH . ? B HOH 398 ? 1_555 102.7 ? 15 O1B ? F ATP . ? B ATP 344 ? 1_555 CA ? E CA . ? B CA 343 ? 1_555 O ? G HOH . ? B HOH 398 ? 1_555 65.6 ? 16 O ? A ALA 181 ? B ALA 181 ? 1_555 CA ? D CA . ? B CA 342 ? 1_555 O ? A ILE 186 ? B ILE 186 ? 1_555 81.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_ref_seq_dif 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.value' 16 3 'Structure model' '_struct_conn.pdbx_dist_value' 17 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 3 'Structure model' '_struct_ref_seq_dif.details' 29 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -17.4259 5.3735 -6.1482 0.4048 0.4541 0.3703 0.0925 0.0132 0.0124 0.7911 1.5550 1.1945 0.1076 1.6394 -0.0553 -0.0502 -0.0492 -0.1316 0.1181 0.1524 0.1008 0.1261 0.2183 -0.0000 'X-RAY DIFFRACTION' 2 ? refined -35.2030 19.9130 -8.5199 0.2477 0.3691 0.3508 0.0491 -0.0126 -0.0457 1.5174 2.5120 1.4527 -0.3046 -0.2834 -0.0596 -0.2395 -0.3388 0.0321 0.1876 0.2104 0.4062 -0.0510 -0.0817 -0.0000 'X-RAY DIFFRACTION' 3 ? refined -37.3273 27.8098 -16.0878 0.5545 0.4973 0.4818 0.0333 -0.1981 -0.0695 0.3670 0.1970 0.1096 0.6210 -0.2334 -0.4263 -0.0148 -0.0096 -0.0248 -1.1576 -0.1154 0.6074 -0.3477 -0.6652 -0.0000 'X-RAY DIFFRACTION' 4 ? refined -7.4864 16.3002 -29.1926 0.4650 0.4510 0.3922 0.0737 0.0872 -0.0086 2.2666 1.6467 3.3031 -0.9189 -0.3207 0.4313 -0.0066 -0.0237 0.2323 -0.0002 -0.1313 -0.0590 0.2720 0.2996 0.0000 'X-RAY DIFFRACTION' 5 ? refined -20.0450 30.3522 -26.2127 0.5145 0.2462 0.3809 -0.0776 -0.0761 0.0111 1.0050 0.0201 0.3255 -0.0327 -0.4074 0.6148 0.1400 -0.5204 0.0916 -0.1735 -0.0497 0.3427 0.6058 0.0032 -0.0000 'X-RAY DIFFRACTION' 6 ? refined -17.1001 27.3813 -25.0517 0.5081 0.3170 0.3316 0.0296 -0.0364 0.0334 0.5179 1.2272 -0.0525 1.0814 -1.3786 0.8173 -0.1195 -0.3337 0.0794 0.3710 -0.4329 -0.4465 0.2081 0.4742 -0.0000 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain B and resid 1:91)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain B and resid 92:222)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain B and resid 223:239)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(chain B and resid 240:341)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(chain P and resid 1:13)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(chain T and resid 3:17)' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.6.4_486)' ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 T _pdbx_validate_rmsd_bond.auth_comp_id_1 DT _pdbx_validate_rmsd_bond.auth_seq_id_1 4 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "O5'" _pdbx_validate_rmsd_bond.auth_asym_id_2 T _pdbx_validate_rmsd_bond.auth_comp_id_2 DT _pdbx_validate_rmsd_bond.auth_seq_id_2 4 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.684 _pdbx_validate_rmsd_bond.bond_target_value 1.593 _pdbx_validate_rmsd_bond.bond_deviation 0.091 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.010 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" P DG 2 ? ? "C2'" P DG 2 ? ? "C1'" P DG 2 ? ? 96.03 102.40 -6.37 0.80 N 2 1 "O4'" P DG 2 ? ? "C1'" P DG 2 ? ? N9 P DG 2 ? ? 111.47 108.30 3.17 0.30 N 3 1 "O4'" P DA 10 ? ? "C1'" P DA 10 ? ? N9 P DA 10 ? ? 111.00 108.30 2.70 0.30 N 4 1 "O4'" P DC 13 ? ? "C1'" P DC 13 ? ? N1 P DC 13 ? ? 110.20 108.30 1.90 0.30 N 5 1 "O5'" T DT 4 ? ? P T DT 4 ? ? OP1 T DT 4 ? ? 96.27 105.70 -9.43 0.90 N 6 1 C2 T DT 4 ? ? N3 T DT 4 ? ? C4 T DT 4 ? ? 123.20 127.20 -4.00 0.60 N 7 1 N1 T DG 5 ? ? C2 T DG 5 ? ? N2 T DG 5 ? ? 122.96 116.20 6.76 0.90 N 8 1 N3 T DG 5 ? ? C2 T DG 5 ? ? N2 T DG 5 ? ? 115.61 119.90 -4.29 0.70 N 9 1 N1 T DG 5 ? ? C6 T DG 5 ? ? O6 T DG 5 ? ? 126.19 119.90 6.29 0.60 N 10 1 C5 T DG 5 ? ? C6 T DG 5 ? ? O6 T DG 5 ? ? 124.21 128.60 -4.39 0.60 N 11 1 "O4'" T DG 7 ? ? "C1'" T DG 7 ? ? N9 T DG 7 ? ? 113.43 108.30 5.13 0.30 N 12 1 "O4'" T DC 10 ? ? "C1'" T DC 10 ? ? N1 T DC 10 ? ? 110.28 108.30 1.98 0.30 N 13 1 "O4'" T DC 14 ? ? "C1'" T DC 14 ? ? N1 T DC 14 ? ? 110.22 108.30 1.92 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR B 10 ? ? 25.54 56.19 2 1 ASP B 113 ? ? -89.57 33.70 3 1 LYS B 114 ? ? -136.57 -34.63 4 1 SER B 145 ? ? -175.79 -169.99 5 1 ASP B 277 ? ? 30.88 85.89 6 1 LYS B 278 ? ? 86.15 -27.76 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 P DC 13 ? "O3'" ? B DC 13 "O3'" 2 1 N 1 B ATP 344 ? PG ? F ATP 1 PG 3 1 N 1 B ATP 344 ? O1G ? F ATP 1 O1G 4 1 N 1 B ATP 344 ? O2G ? F ATP 1 O2G 5 1 N 1 B ATP 344 ? O3G ? F ATP 1 O3G # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 T DT 0 ? C DT 1 2 1 Y 1 T DT 1 ? C DT 2 3 1 Y 1 T DC 2 ? C DC 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 ATP PG P N N 74 ATP O1G O N N 75 ATP O2G O N N 76 ATP O3G O N N 77 ATP PB P N R 78 ATP O1B O N N 79 ATP O2B O N N 80 ATP O3B O N N 81 ATP PA P N R 82 ATP O1A O N N 83 ATP O2A O N N 84 ATP O3A O N N 85 ATP "O5'" O N N 86 ATP "C5'" C N N 87 ATP "C4'" C N R 88 ATP "O4'" O N N 89 ATP "C3'" C N S 90 ATP "O3'" O N N 91 ATP "C2'" C N R 92 ATP "O2'" O N N 93 ATP "C1'" C N R 94 ATP N9 N Y N 95 ATP C8 C Y N 96 ATP N7 N Y N 97 ATP C5 C Y N 98 ATP C6 C Y N 99 ATP N6 N N N 100 ATP N1 N Y N 101 ATP C2 C Y N 102 ATP N3 N Y N 103 ATP C4 C Y N 104 ATP HOG2 H N N 105 ATP HOG3 H N N 106 ATP HOB2 H N N 107 ATP HOA2 H N N 108 ATP "H5'1" H N N 109 ATP "H5'2" H N N 110 ATP "H4'" H N N 111 ATP "H3'" H N N 112 ATP "HO3'" H N N 113 ATP "H2'" H N N 114 ATP "HO2'" H N N 115 ATP "H1'" H N N 116 ATP H8 H N N 117 ATP HN61 H N N 118 ATP HN62 H N N 119 ATP H2 H N N 120 CA CA CA N N 121 CYS N N N N 122 CYS CA C N R 123 CYS C C N N 124 CYS O O N N 125 CYS CB C N N 126 CYS SG S N N 127 CYS OXT O N N 128 CYS H H N N 129 CYS H2 H N N 130 CYS HA H N N 131 CYS HB2 H N N 132 CYS HB3 H N N 133 CYS HG H N N 134 CYS HXT H N N 135 DA OP3 O N N 136 DA P P N N 137 DA OP1 O N N 138 DA OP2 O N N 139 DA "O5'" O N N 140 DA "C5'" C N N 141 DA "C4'" C N R 142 DA "O4'" O N N 143 DA "C3'" C N S 144 DA "O3'" O N N 145 DA "C2'" C N N 146 DA "C1'" C N R 147 DA N9 N Y N 148 DA C8 C Y N 149 DA N7 N Y N 150 DA C5 C Y N 151 DA C6 C Y N 152 DA N6 N N N 153 DA N1 N Y N 154 DA C2 C Y N 155 DA N3 N Y N 156 DA C4 C Y N 157 DA HOP3 H N N 158 DA HOP2 H N N 159 DA "H5'" H N N 160 DA "H5''" H N N 161 DA "H4'" H N N 162 DA "H3'" H N N 163 DA "HO3'" H N N 164 DA "H2'" H N N 165 DA "H2''" H N N 166 DA "H1'" H N N 167 DA H8 H N N 168 DA H61 H N N 169 DA H62 H N N 170 DA H2 H N N 171 DC OP3 O N N 172 DC P P N N 173 DC OP1 O N N 174 DC OP2 O N N 175 DC "O5'" O N N 176 DC "C5'" C N N 177 DC "C4'" C N R 178 DC "O4'" O N N 179 DC "C3'" C N S 180 DC "O3'" O N N 181 DC "C2'" C N N 182 DC "C1'" C N R 183 DC N1 N N N 184 DC C2 C N N 185 DC O2 O N N 186 DC N3 N N N 187 DC C4 C N N 188 DC N4 N N N 189 DC C5 C N N 190 DC C6 C N N 191 DC HOP3 H N N 192 DC HOP2 H N N 193 DC "H5'" H N N 194 DC "H5''" H N N 195 DC "H4'" H N N 196 DC "H3'" H N N 197 DC "HO3'" H N N 198 DC "H2'" H N N 199 DC "H2''" H N N 200 DC "H1'" H N N 201 DC H41 H N N 202 DC H42 H N N 203 DC H5 H N N 204 DC H6 H N N 205 DG OP3 O N N 206 DG P P N N 207 DG OP1 O N N 208 DG OP2 O N N 209 DG "O5'" O N N 210 DG "C5'" C N N 211 DG "C4'" C N R 212 DG "O4'" O N N 213 DG "C3'" C N S 214 DG "O3'" O N N 215 DG "C2'" C N N 216 DG "C1'" C N R 217 DG N9 N Y N 218 DG C8 C Y N 219 DG N7 N Y N 220 DG C5 C Y N 221 DG C6 C N N 222 DG O6 O N N 223 DG N1 N N N 224 DG C2 C N N 225 DG N2 N N N 226 DG N3 N N N 227 DG C4 C Y N 228 DG HOP3 H N N 229 DG HOP2 H N N 230 DG "H5'" H N N 231 DG "H5''" H N N 232 DG "H4'" H N N 233 DG "H3'" H N N 234 DG "HO3'" H N N 235 DG "H2'" H N N 236 DG "H2''" H N N 237 DG "H1'" H N N 238 DG H8 H N N 239 DG H1 H N N 240 DG H21 H N N 241 DG H22 H N N 242 DT OP3 O N N 243 DT P P N N 244 DT OP1 O N N 245 DT OP2 O N N 246 DT "O5'" O N N 247 DT "C5'" C N N 248 DT "C4'" C N R 249 DT "O4'" O N N 250 DT "C3'" C N S 251 DT "O3'" O N N 252 DT "C2'" C N N 253 DT "C1'" C N R 254 DT N1 N N N 255 DT C2 C N N 256 DT O2 O N N 257 DT N3 N N N 258 DT C4 C N N 259 DT O4 O N N 260 DT C5 C N N 261 DT C7 C N N 262 DT C6 C N N 263 DT HOP3 H N N 264 DT HOP2 H N N 265 DT "H5'" H N N 266 DT "H5''" H N N 267 DT "H4'" H N N 268 DT "H3'" H N N 269 DT "HO3'" H N N 270 DT "H2'" H N N 271 DT "H2''" H N N 272 DT "H1'" H N N 273 DT H3 H N N 274 DT H71 H N N 275 DT H72 H N N 276 DT H73 H N N 277 DT H6 H N N 278 GLN N N N N 279 GLN CA C N S 280 GLN C C N N 281 GLN O O N N 282 GLN CB C N N 283 GLN CG C N N 284 GLN CD C N N 285 GLN OE1 O N N 286 GLN NE2 N N N 287 GLN OXT O N N 288 GLN H H N N 289 GLN H2 H N N 290 GLN HA H N N 291 GLN HB2 H N N 292 GLN HB3 H N N 293 GLN HG2 H N N 294 GLN HG3 H N N 295 GLN HE21 H N N 296 GLN HE22 H N N 297 GLN HXT H N N 298 GLU N N N N 299 GLU CA C N S 300 GLU C C N N 301 GLU O O N N 302 GLU CB C N N 303 GLU CG C N N 304 GLU CD C N N 305 GLU OE1 O N N 306 GLU OE2 O N N 307 GLU OXT O N N 308 GLU H H N N 309 GLU H2 H N N 310 GLU HA H N N 311 GLU HB2 H N N 312 GLU HB3 H N N 313 GLU HG2 H N N 314 GLU HG3 H N N 315 GLU HE2 H N N 316 GLU HXT H N N 317 GLY N N N N 318 GLY CA C N N 319 GLY C C N N 320 GLY O O N N 321 GLY OXT O N N 322 GLY H H N N 323 GLY H2 H N N 324 GLY HA2 H N N 325 GLY HA3 H N N 326 GLY HXT H N N 327 HIS N N N N 328 HIS CA C N S 329 HIS C C N N 330 HIS O O N N 331 HIS CB C N N 332 HIS CG C Y N 333 HIS ND1 N Y N 334 HIS CD2 C Y N 335 HIS CE1 C Y N 336 HIS NE2 N Y N 337 HIS OXT O N N 338 HIS H H N N 339 HIS H2 H N N 340 HIS HA H N N 341 HIS HB2 H N N 342 HIS HB3 H N N 343 HIS HD1 H N N 344 HIS HD2 H N N 345 HIS HE1 H N N 346 HIS HE2 H N N 347 HIS HXT H N N 348 HOH O O N N 349 HOH H1 H N N 350 HOH H2 H N N 351 ILE N N N N 352 ILE CA C N S 353 ILE C C N N 354 ILE O O N N 355 ILE CB C N S 356 ILE CG1 C N N 357 ILE CG2 C N N 358 ILE CD1 C N N 359 ILE OXT O N N 360 ILE H H N N 361 ILE H2 H N N 362 ILE HA H N N 363 ILE HB H N N 364 ILE HG12 H N N 365 ILE HG13 H N N 366 ILE HG21 H N N 367 ILE HG22 H N N 368 ILE HG23 H N N 369 ILE HD11 H N N 370 ILE HD12 H N N 371 ILE HD13 H N N 372 ILE HXT H N N 373 LEU N N N N 374 LEU CA C N S 375 LEU C C N N 376 LEU O O N N 377 LEU CB C N N 378 LEU CG C N N 379 LEU CD1 C N N 380 LEU CD2 C N N 381 LEU OXT O N N 382 LEU H H N N 383 LEU H2 H N N 384 LEU HA H N N 385 LEU HB2 H N N 386 LEU HB3 H N N 387 LEU HG H N N 388 LEU HD11 H N N 389 LEU HD12 H N N 390 LEU HD13 H N N 391 LEU HD21 H N N 392 LEU HD22 H N N 393 LEU HD23 H N N 394 LEU HXT H N N 395 LYS N N N N 396 LYS CA C N S 397 LYS C C N N 398 LYS O O N N 399 LYS CB C N N 400 LYS CG C N N 401 LYS CD C N N 402 LYS CE C N N 403 LYS NZ N N N 404 LYS OXT O N N 405 LYS H H N N 406 LYS H2 H N N 407 LYS HA H N N 408 LYS HB2 H N N 409 LYS HB3 H N N 410 LYS HG2 H N N 411 LYS HG3 H N N 412 LYS HD2 H N N 413 LYS HD3 H N N 414 LYS HE2 H N N 415 LYS HE3 H N N 416 LYS HZ1 H N N 417 LYS HZ2 H N N 418 LYS HZ3 H N N 419 LYS HXT H N N 420 MET N N N N 421 MET CA C N S 422 MET C C N N 423 MET O O N N 424 MET CB C N N 425 MET CG C N N 426 MET SD S N N 427 MET CE C N N 428 MET OXT O N N 429 MET H H N N 430 MET H2 H N N 431 MET HA H N N 432 MET HB2 H N N 433 MET HB3 H N N 434 MET HG2 H N N 435 MET HG3 H N N 436 MET HE1 H N N 437 MET HE2 H N N 438 MET HE3 H N N 439 MET HXT H N N 440 PHE N N N N 441 PHE CA C N S 442 PHE C C N N 443 PHE O O N N 444 PHE CB C N N 445 PHE CG C Y N 446 PHE CD1 C Y N 447 PHE CD2 C Y N 448 PHE CE1 C Y N 449 PHE CE2 C Y N 450 PHE CZ C Y N 451 PHE OXT O N N 452 PHE H H N N 453 PHE H2 H N N 454 PHE HA H N N 455 PHE HB2 H N N 456 PHE HB3 H N N 457 PHE HD1 H N N 458 PHE HD2 H N N 459 PHE HE1 H N N 460 PHE HE2 H N N 461 PHE HZ H N N 462 PHE HXT H N N 463 PRO N N N N 464 PRO CA C N S 465 PRO C C N N 466 PRO O O N N 467 PRO CB C N N 468 PRO CG C N N 469 PRO CD C N N 470 PRO OXT O N N 471 PRO H H N N 472 PRO HA H N N 473 PRO HB2 H N N 474 PRO HB3 H N N 475 PRO HG2 H N N 476 PRO HG3 H N N 477 PRO HD2 H N N 478 PRO HD3 H N N 479 PRO HXT H N N 480 SER N N N N 481 SER CA C N S 482 SER C C N N 483 SER O O N N 484 SER CB C N N 485 SER OG O N N 486 SER OXT O N N 487 SER H H N N 488 SER H2 H N N 489 SER HA H N N 490 SER HB2 H N N 491 SER HB3 H N N 492 SER HG H N N 493 SER HXT H N N 494 THR N N N N 495 THR CA C N S 496 THR C C N N 497 THR O O N N 498 THR CB C N R 499 THR OG1 O N N 500 THR CG2 C N N 501 THR OXT O N N 502 THR H H N N 503 THR H2 H N N 504 THR HA H N N 505 THR HB H N N 506 THR HG1 H N N 507 THR HG21 H N N 508 THR HG22 H N N 509 THR HG23 H N N 510 THR HXT H N N 511 TYR N N N N 512 TYR CA C N S 513 TYR C C N N 514 TYR O O N N 515 TYR CB C N N 516 TYR CG C Y N 517 TYR CD1 C Y N 518 TYR CD2 C Y N 519 TYR CE1 C Y N 520 TYR CE2 C Y N 521 TYR CZ C Y N 522 TYR OH O N N 523 TYR OXT O N N 524 TYR H H N N 525 TYR H2 H N N 526 TYR HA H N N 527 TYR HB2 H N N 528 TYR HB3 H N N 529 TYR HD1 H N N 530 TYR HD2 H N N 531 TYR HE1 H N N 532 TYR HE2 H N N 533 TYR HH H N N 534 TYR HXT H N N 535 VAL N N N N 536 VAL CA C N S 537 VAL C C N N 538 VAL O O N N 539 VAL CB C N N 540 VAL CG1 C N N 541 VAL CG2 C N N 542 VAL OXT O N N 543 VAL H H N N 544 VAL H2 H N N 545 VAL HA H N N 546 VAL HB H N N 547 VAL HG11 H N N 548 VAL HG12 H N N 549 VAL HG13 H N N 550 VAL HG21 H N N 551 VAL HG22 H N N 552 VAL HG23 H N N 553 VAL HXT H N N 554 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 ATP PG O1G doub N N 70 ATP PG O2G sing N N 71 ATP PG O3G sing N N 72 ATP PG O3B sing N N 73 ATP O2G HOG2 sing N N 74 ATP O3G HOG3 sing N N 75 ATP PB O1B doub N N 76 ATP PB O2B sing N N 77 ATP PB O3B sing N N 78 ATP PB O3A sing N N 79 ATP O2B HOB2 sing N N 80 ATP PA O1A doub N N 81 ATP PA O2A sing N N 82 ATP PA O3A sing N N 83 ATP PA "O5'" sing N N 84 ATP O2A HOA2 sing N N 85 ATP "O5'" "C5'" sing N N 86 ATP "C5'" "C4'" sing N N 87 ATP "C5'" "H5'1" sing N N 88 ATP "C5'" "H5'2" sing N N 89 ATP "C4'" "O4'" sing N N 90 ATP "C4'" "C3'" sing N N 91 ATP "C4'" "H4'" sing N N 92 ATP "O4'" "C1'" sing N N 93 ATP "C3'" "O3'" sing N N 94 ATP "C3'" "C2'" sing N N 95 ATP "C3'" "H3'" sing N N 96 ATP "O3'" "HO3'" sing N N 97 ATP "C2'" "O2'" sing N N 98 ATP "C2'" "C1'" sing N N 99 ATP "C2'" "H2'" sing N N 100 ATP "O2'" "HO2'" sing N N 101 ATP "C1'" N9 sing N N 102 ATP "C1'" "H1'" sing N N 103 ATP N9 C8 sing Y N 104 ATP N9 C4 sing Y N 105 ATP C8 N7 doub Y N 106 ATP C8 H8 sing N N 107 ATP N7 C5 sing Y N 108 ATP C5 C6 sing Y N 109 ATP C5 C4 doub Y N 110 ATP C6 N6 sing N N 111 ATP C6 N1 doub Y N 112 ATP N6 HN61 sing N N 113 ATP N6 HN62 sing N N 114 ATP N1 C2 sing Y N 115 ATP C2 N3 doub Y N 116 ATP C2 H2 sing N N 117 ATP N3 C4 sing Y N 118 CYS N CA sing N N 119 CYS N H sing N N 120 CYS N H2 sing N N 121 CYS CA C sing N N 122 CYS CA CB sing N N 123 CYS CA HA sing N N 124 CYS C O doub N N 125 CYS C OXT sing N N 126 CYS CB SG sing N N 127 CYS CB HB2 sing N N 128 CYS CB HB3 sing N N 129 CYS SG HG sing N N 130 CYS OXT HXT sing N N 131 DA OP3 P sing N N 132 DA OP3 HOP3 sing N N 133 DA P OP1 doub N N 134 DA P OP2 sing N N 135 DA P "O5'" sing N N 136 DA OP2 HOP2 sing N N 137 DA "O5'" "C5'" sing N N 138 DA "C5'" "C4'" sing N N 139 DA "C5'" "H5'" sing N N 140 DA "C5'" "H5''" sing N N 141 DA "C4'" "O4'" sing N N 142 DA "C4'" "C3'" sing N N 143 DA "C4'" "H4'" sing N N 144 DA "O4'" "C1'" sing N N 145 DA "C3'" "O3'" sing N N 146 DA "C3'" "C2'" sing N N 147 DA "C3'" "H3'" sing N N 148 DA "O3'" "HO3'" sing N N 149 DA "C2'" "C1'" sing N N 150 DA "C2'" "H2'" sing N N 151 DA "C2'" "H2''" sing N N 152 DA "C1'" N9 sing N N 153 DA "C1'" "H1'" sing N N 154 DA N9 C8 sing Y N 155 DA N9 C4 sing Y N 156 DA C8 N7 doub Y N 157 DA C8 H8 sing N N 158 DA N7 C5 sing Y N 159 DA C5 C6 sing Y N 160 DA C5 C4 doub Y N 161 DA C6 N6 sing N N 162 DA C6 N1 doub Y N 163 DA N6 H61 sing N N 164 DA N6 H62 sing N N 165 DA N1 C2 sing Y N 166 DA C2 N3 doub Y N 167 DA C2 H2 sing N N 168 DA N3 C4 sing Y N 169 DC OP3 P sing N N 170 DC OP3 HOP3 sing N N 171 DC P OP1 doub N N 172 DC P OP2 sing N N 173 DC P "O5'" sing N N 174 DC OP2 HOP2 sing N N 175 DC "O5'" "C5'" sing N N 176 DC "C5'" "C4'" sing N N 177 DC "C5'" "H5'" sing N N 178 DC "C5'" "H5''" sing N N 179 DC "C4'" "O4'" sing N N 180 DC "C4'" "C3'" sing N N 181 DC "C4'" "H4'" sing N N 182 DC "O4'" "C1'" sing N N 183 DC "C3'" "O3'" sing N N 184 DC "C3'" "C2'" sing N N 185 DC "C3'" "H3'" sing N N 186 DC "O3'" "HO3'" sing N N 187 DC "C2'" "C1'" sing N N 188 DC "C2'" "H2'" sing N N 189 DC "C2'" "H2''" sing N N 190 DC "C1'" N1 sing N N 191 DC "C1'" "H1'" sing N N 192 DC N1 C2 sing N N 193 DC N1 C6 sing N N 194 DC C2 O2 doub N N 195 DC C2 N3 sing N N 196 DC N3 C4 doub N N 197 DC C4 N4 sing N N 198 DC C4 C5 sing N N 199 DC N4 H41 sing N N 200 DC N4 H42 sing N N 201 DC C5 C6 doub N N 202 DC C5 H5 sing N N 203 DC C6 H6 sing N N 204 DG OP3 P sing N N 205 DG OP3 HOP3 sing N N 206 DG P OP1 doub N N 207 DG P OP2 sing N N 208 DG P "O5'" sing N N 209 DG OP2 HOP2 sing N N 210 DG "O5'" "C5'" sing N N 211 DG "C5'" "C4'" sing N N 212 DG "C5'" "H5'" sing N N 213 DG "C5'" "H5''" sing N N 214 DG "C4'" "O4'" sing N N 215 DG "C4'" "C3'" sing N N 216 DG "C4'" "H4'" sing N N 217 DG "O4'" "C1'" sing N N 218 DG "C3'" "O3'" sing N N 219 DG "C3'" "C2'" sing N N 220 DG "C3'" "H3'" sing N N 221 DG "O3'" "HO3'" sing N N 222 DG "C2'" "C1'" sing N N 223 DG "C2'" "H2'" sing N N 224 DG "C2'" "H2''" sing N N 225 DG "C1'" N9 sing N N 226 DG "C1'" "H1'" sing N N 227 DG N9 C8 sing Y N 228 DG N9 C4 sing Y N 229 DG C8 N7 doub Y N 230 DG C8 H8 sing N N 231 DG N7 C5 sing Y N 232 DG C5 C6 sing N N 233 DG C5 C4 doub Y N 234 DG C6 O6 doub N N 235 DG C6 N1 sing N N 236 DG N1 C2 sing N N 237 DG N1 H1 sing N N 238 DG C2 N2 sing N N 239 DG C2 N3 doub N N 240 DG N2 H21 sing N N 241 DG N2 H22 sing N N 242 DG N3 C4 sing N N 243 DT OP3 P sing N N 244 DT OP3 HOP3 sing N N 245 DT P OP1 doub N N 246 DT P OP2 sing N N 247 DT P "O5'" sing N N 248 DT OP2 HOP2 sing N N 249 DT "O5'" "C5'" sing N N 250 DT "C5'" "C4'" sing N N 251 DT "C5'" "H5'" sing N N 252 DT "C5'" "H5''" sing N N 253 DT "C4'" "O4'" sing N N 254 DT "C4'" "C3'" sing N N 255 DT "C4'" "H4'" sing N N 256 DT "O4'" "C1'" sing N N 257 DT "C3'" "O3'" sing N N 258 DT "C3'" "C2'" sing N N 259 DT "C3'" "H3'" sing N N 260 DT "O3'" "HO3'" sing N N 261 DT "C2'" "C1'" sing N N 262 DT "C2'" "H2'" sing N N 263 DT "C2'" "H2''" sing N N 264 DT "C1'" N1 sing N N 265 DT "C1'" "H1'" sing N N 266 DT N1 C2 sing N N 267 DT N1 C6 sing N N 268 DT C2 O2 doub N N 269 DT C2 N3 sing N N 270 DT N3 C4 sing N N 271 DT N3 H3 sing N N 272 DT C4 O4 doub N N 273 DT C4 C5 sing N N 274 DT C5 C7 sing N N 275 DT C5 C6 doub N N 276 DT C7 H71 sing N N 277 DT C7 H72 sing N N 278 DT C7 H73 sing N N 279 DT C6 H6 sing N N 280 GLN N CA sing N N 281 GLN N H sing N N 282 GLN N H2 sing N N 283 GLN CA C sing N N 284 GLN CA CB sing N N 285 GLN CA HA sing N N 286 GLN C O doub N N 287 GLN C OXT sing N N 288 GLN CB CG sing N N 289 GLN CB HB2 sing N N 290 GLN CB HB3 sing N N 291 GLN CG CD sing N N 292 GLN CG HG2 sing N N 293 GLN CG HG3 sing N N 294 GLN CD OE1 doub N N 295 GLN CD NE2 sing N N 296 GLN NE2 HE21 sing N N 297 GLN NE2 HE22 sing N N 298 GLN OXT HXT sing N N 299 GLU N CA sing N N 300 GLU N H sing N N 301 GLU N H2 sing N N 302 GLU CA C sing N N 303 GLU CA CB sing N N 304 GLU CA HA sing N N 305 GLU C O doub N N 306 GLU C OXT sing N N 307 GLU CB CG sing N N 308 GLU CB HB2 sing N N 309 GLU CB HB3 sing N N 310 GLU CG CD sing N N 311 GLU CG HG2 sing N N 312 GLU CG HG3 sing N N 313 GLU CD OE1 doub N N 314 GLU CD OE2 sing N N 315 GLU OE2 HE2 sing N N 316 GLU OXT HXT sing N N 317 GLY N CA sing N N 318 GLY N H sing N N 319 GLY N H2 sing N N 320 GLY CA C sing N N 321 GLY CA HA2 sing N N 322 GLY CA HA3 sing N N 323 GLY C O doub N N 324 GLY C OXT sing N N 325 GLY OXT HXT sing N N 326 HIS N CA sing N N 327 HIS N H sing N N 328 HIS N H2 sing N N 329 HIS CA C sing N N 330 HIS CA CB sing N N 331 HIS CA HA sing N N 332 HIS C O doub N N 333 HIS C OXT sing N N 334 HIS CB CG sing N N 335 HIS CB HB2 sing N N 336 HIS CB HB3 sing N N 337 HIS CG ND1 sing Y N 338 HIS CG CD2 doub Y N 339 HIS ND1 CE1 doub Y N 340 HIS ND1 HD1 sing N N 341 HIS CD2 NE2 sing Y N 342 HIS CD2 HD2 sing N N 343 HIS CE1 NE2 sing Y N 344 HIS CE1 HE1 sing N N 345 HIS NE2 HE2 sing N N 346 HIS OXT HXT sing N N 347 HOH O H1 sing N N 348 HOH O H2 sing N N 349 ILE N CA sing N N 350 ILE N H sing N N 351 ILE N H2 sing N N 352 ILE CA C sing N N 353 ILE CA CB sing N N 354 ILE CA HA sing N N 355 ILE C O doub N N 356 ILE C OXT sing N N 357 ILE CB CG1 sing N N 358 ILE CB CG2 sing N N 359 ILE CB HB sing N N 360 ILE CG1 CD1 sing N N 361 ILE CG1 HG12 sing N N 362 ILE CG1 HG13 sing N N 363 ILE CG2 HG21 sing N N 364 ILE CG2 HG22 sing N N 365 ILE CG2 HG23 sing N N 366 ILE CD1 HD11 sing N N 367 ILE CD1 HD12 sing N N 368 ILE CD1 HD13 sing N N 369 ILE OXT HXT sing N N 370 LEU N CA sing N N 371 LEU N H sing N N 372 LEU N H2 sing N N 373 LEU CA C sing N N 374 LEU CA CB sing N N 375 LEU CA HA sing N N 376 LEU C O doub N N 377 LEU C OXT sing N N 378 LEU CB CG sing N N 379 LEU CB HB2 sing N N 380 LEU CB HB3 sing N N 381 LEU CG CD1 sing N N 382 LEU CG CD2 sing N N 383 LEU CG HG sing N N 384 LEU CD1 HD11 sing N N 385 LEU CD1 HD12 sing N N 386 LEU CD1 HD13 sing N N 387 LEU CD2 HD21 sing N N 388 LEU CD2 HD22 sing N N 389 LEU CD2 HD23 sing N N 390 LEU OXT HXT sing N N 391 LYS N CA sing N N 392 LYS N H sing N N 393 LYS N H2 sing N N 394 LYS CA C sing N N 395 LYS CA CB sing N N 396 LYS CA HA sing N N 397 LYS C O doub N N 398 LYS C OXT sing N N 399 LYS CB CG sing N N 400 LYS CB HB2 sing N N 401 LYS CB HB3 sing N N 402 LYS CG CD sing N N 403 LYS CG HG2 sing N N 404 LYS CG HG3 sing N N 405 LYS CD CE sing N N 406 LYS CD HD2 sing N N 407 LYS CD HD3 sing N N 408 LYS CE NZ sing N N 409 LYS CE HE2 sing N N 410 LYS CE HE3 sing N N 411 LYS NZ HZ1 sing N N 412 LYS NZ HZ2 sing N N 413 LYS NZ HZ3 sing N N 414 LYS OXT HXT sing N N 415 MET N CA sing N N 416 MET N H sing N N 417 MET N H2 sing N N 418 MET CA C sing N N 419 MET CA CB sing N N 420 MET CA HA sing N N 421 MET C O doub N N 422 MET C OXT sing N N 423 MET CB CG sing N N 424 MET CB HB2 sing N N 425 MET CB HB3 sing N N 426 MET CG SD sing N N 427 MET CG HG2 sing N N 428 MET CG HG3 sing N N 429 MET SD CE sing N N 430 MET CE HE1 sing N N 431 MET CE HE2 sing N N 432 MET CE HE3 sing N N 433 MET OXT HXT sing N N 434 PHE N CA sing N N 435 PHE N H sing N N 436 PHE N H2 sing N N 437 PHE CA C sing N N 438 PHE CA CB sing N N 439 PHE CA HA sing N N 440 PHE C O doub N N 441 PHE C OXT sing N N 442 PHE CB CG sing N N 443 PHE CB HB2 sing N N 444 PHE CB HB3 sing N N 445 PHE CG CD1 doub Y N 446 PHE CG CD2 sing Y N 447 PHE CD1 CE1 sing Y N 448 PHE CD1 HD1 sing N N 449 PHE CD2 CE2 doub Y N 450 PHE CD2 HD2 sing N N 451 PHE CE1 CZ doub Y N 452 PHE CE1 HE1 sing N N 453 PHE CE2 CZ sing Y N 454 PHE CE2 HE2 sing N N 455 PHE CZ HZ sing N N 456 PHE OXT HXT sing N N 457 PRO N CA sing N N 458 PRO N CD sing N N 459 PRO N H sing N N 460 PRO CA C sing N N 461 PRO CA CB sing N N 462 PRO CA HA sing N N 463 PRO C O doub N N 464 PRO C OXT sing N N 465 PRO CB CG sing N N 466 PRO CB HB2 sing N N 467 PRO CB HB3 sing N N 468 PRO CG CD sing N N 469 PRO CG HG2 sing N N 470 PRO CG HG3 sing N N 471 PRO CD HD2 sing N N 472 PRO CD HD3 sing N N 473 PRO OXT HXT sing N N 474 SER N CA sing N N 475 SER N H sing N N 476 SER N H2 sing N N 477 SER CA C sing N N 478 SER CA CB sing N N 479 SER CA HA sing N N 480 SER C O doub N N 481 SER C OXT sing N N 482 SER CB OG sing N N 483 SER CB HB2 sing N N 484 SER CB HB3 sing N N 485 SER OG HG sing N N 486 SER OXT HXT sing N N 487 THR N CA sing N N 488 THR N H sing N N 489 THR N H2 sing N N 490 THR CA C sing N N 491 THR CA CB sing N N 492 THR CA HA sing N N 493 THR C O doub N N 494 THR C OXT sing N N 495 THR CB OG1 sing N N 496 THR CB CG2 sing N N 497 THR CB HB sing N N 498 THR OG1 HG1 sing N N 499 THR CG2 HG21 sing N N 500 THR CG2 HG22 sing N N 501 THR CG2 HG23 sing N N 502 THR OXT HXT sing N N 503 TYR N CA sing N N 504 TYR N H sing N N 505 TYR N H2 sing N N 506 TYR CA C sing N N 507 TYR CA CB sing N N 508 TYR CA HA sing N N 509 TYR C O doub N N 510 TYR C OXT sing N N 511 TYR CB CG sing N N 512 TYR CB HB2 sing N N 513 TYR CB HB3 sing N N 514 TYR CG CD1 doub Y N 515 TYR CG CD2 sing Y N 516 TYR CD1 CE1 sing Y N 517 TYR CD1 HD1 sing N N 518 TYR CD2 CE2 doub Y N 519 TYR CD2 HD2 sing N N 520 TYR CE1 CZ doub Y N 521 TYR CE1 HE1 sing N N 522 TYR CE2 CZ sing Y N 523 TYR CE2 HE2 sing N N 524 TYR CZ OH sing N N 525 TYR OH HH sing N N 526 TYR OXT HXT sing N N 527 VAL N CA sing N N 528 VAL N H sing N N 529 VAL N H2 sing N N 530 VAL CA C sing N N 531 VAL CA CB sing N N 532 VAL CA HA sing N N 533 VAL C O doub N N 534 VAL C OXT sing N N 535 VAL CB CG1 sing N N 536 VAL CB CG2 sing N N 537 VAL CB HB sing N N 538 VAL CG1 HG11 sing N N 539 VAL CG1 HG12 sing N N 540 VAL CG1 HG13 sing N N 541 VAL CG2 HG21 sing N N 542 VAL CG2 HG22 sing N N 543 VAL CG2 HG23 sing N N 544 VAL OXT HXT sing N N 545 # _ndb_struct_conf_na.entry_id 3PR5 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 18 1_555 -0.190 -0.312 0.100 0.754 -1.200 -2.809 1 P_DG1:DC17_T P 1 ? T 17 ? 19 1 1 B DG 2 1_555 C DC 17 1_555 -0.219 -0.266 0.040 7.613 -7.492 2.706 2 P_DG2:DC16_T P 2 ? T 16 ? 19 1 1 B DG 3 1_555 C DC 16 1_555 -0.340 -0.222 0.093 2.945 -5.648 -1.106 3 P_DG3:DC15_T P 3 ? T 15 ? 19 1 1 B DG 4 1_555 C DC 15 1_555 0.031 -0.035 0.186 4.285 -8.843 -1.130 4 P_DG4:DC14_T P 4 ? T 14 ? 19 1 1 B DG 5 1_555 C DC 14 1_555 -0.151 -0.147 -0.094 -0.289 -9.181 -3.625 5 P_DG5:DC13_T P 5 ? T 13 ? 19 1 1 B DA 6 1_555 C DT 13 1_555 0.259 -0.248 0.009 0.042 -12.259 2.844 6 P_DA6:DT12_T P 6 ? T 12 ? 20 1 1 B DA 7 1_555 C DT 12 1_555 0.103 -0.290 0.156 3.158 -7.969 1.178 7 P_DA7:DT11_T P 7 ? T 11 ? 20 1 1 B DG 8 1_555 C DC 11 1_555 -0.330 0.025 -0.002 2.683 -7.102 5.432 8 P_DG8:DC10_T P 8 ? T 10 ? 19 1 1 B DG 9 1_555 C DC 10 1_555 -0.164 -0.142 -0.100 -7.236 -8.020 1.235 9 P_DG9:DC9_T P 9 ? T 9 ? 19 1 1 B DA 10 1_555 C DT 9 1_555 0.161 -0.189 0.105 3.499 -7.352 -1.127 10 P_DA10:DT8_T P 10 ? T 8 ? 20 1 1 B DC 11 1_555 C DG 8 1_555 0.378 -0.186 -0.275 7.168 -5.334 1.385 11 P_DC11:DG7_T P 11 ? T 7 ? 19 1 1 B DT 12 1_555 C DA 7 1_555 -0.480 -0.211 -0.415 12.986 -5.815 11.770 12 P_DT12:DA6_T P 12 ? T 6 ? 20 1 1 B DC 13 1_555 C DG 6 1_555 -0.921 -0.813 -0.128 3.792 -9.278 -4.367 13 P_DC13:DG5_T P 13 ? T 5 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 18 1_555 B DG 2 1_555 C DC 17 1_555 0.796 -0.088 3.176 0.586 3.107 30.908 -0.744 -1.377 3.167 5.811 -1.096 31.065 1 PP_DG1DG2:DC16DC17_TT P 1 ? T 17 ? P 2 ? T 16 ? 1 B DG 2 1_555 C DC 17 1_555 B DG 3 1_555 C DC 16 1_555 -1.381 -0.377 3.361 -6.252 2.778 35.547 -1.021 1.291 3.507 4.499 10.125 36.178 2 PP_DG2DG3:DC15DC16_TT P 2 ? T 16 ? P 3 ? T 15 ? 1 B DG 3 1_555 C DC 16 1_555 B DG 4 1_555 C DC 15 1_555 0.486 -0.038 3.216 0.419 6.200 36.243 -0.891 -0.715 3.172 9.877 -0.668 36.754 3 PP_DG3DG4:DC14DC15_TT P 3 ? T 15 ? P 4 ? T 14 ? 1 B DG 4 1_555 C DC 15 1_555 B DG 5 1_555 C DC 14 1_555 -0.758 -0.271 3.402 -1.103 8.561 34.365 -1.751 1.079 3.265 14.214 1.831 35.401 4 PP_DG4DG5:DC13DC14_TT P 4 ? T 14 ? P 5 ? T 13 ? 1 B DG 5 1_555 C DC 14 1_555 B DA 6 1_555 C DT 13 1_555 -0.195 0.002 3.160 -0.767 7.501 37.177 -0.926 0.205 3.105 11.620 1.188 37.907 5 PP_DG5DA6:DT12DC13_TT P 5 ? T 13 ? P 6 ? T 12 ? 1 B DA 6 1_555 C DT 13 1_555 B DA 7 1_555 C DT 12 1_555 0.046 -0.062 3.182 -0.462 2.574 33.114 -0.528 -0.156 3.167 4.507 0.809 33.214 6 PP_DA6DA7:DT11DT12_TT P 6 ? T 12 ? P 7 ? T 11 ? 1 B DA 7 1_555 C DT 12 1_555 B DG 8 1_555 C DC 11 1_555 0.267 -0.410 3.346 0.166 2.189 34.922 -1.019 -0.419 3.316 3.643 -0.277 34.988 7 PP_DA7DG8:DC10DT11_TT P 7 ? T 11 ? P 8 ? T 10 ? 1 B DG 8 1_555 C DC 11 1_555 B DG 9 1_555 C DC 10 1_555 -0.161 -0.926 3.613 0.777 2.749 34.692 -2.006 0.398 3.527 4.601 -1.300 34.806 8 PP_DG8DG9:DC9DC10_TT P 8 ? T 10 ? P 9 ? T 9 ? 1 B DG 9 1_555 C DC 10 1_555 B DA 10 1_555 C DT 9 1_555 -0.066 -0.115 3.152 -0.037 -0.126 33.814 -0.177 0.108 3.152 -0.217 0.064 33.814 9 PP_DG9DA10:DT8DC9_TT P 9 ? T 9 ? P 10 ? T 8 ? 1 B DA 10 1_555 C DT 9 1_555 B DC 11 1_555 C DG 8 1_555 0.731 -0.701 3.250 1.737 4.235 33.525 -1.879 -0.981 3.173 7.299 -2.993 33.827 10 PP_DA10DC11:DG7DT8_TT P 10 ? T 8 ? P 11 ? T 7 ? 1 B DC 11 1_555 C DG 8 1_555 B DT 12 1_555 C DA 7 1_555 -0.062 -0.467 3.139 -0.788 5.432 25.343 -2.462 -0.067 2.976 12.200 1.770 25.921 11 PP_DC11DT12:DA6DG7_TT P 11 ? T 7 ? P 12 ? T 6 ? 1 B DT 12 1_555 C DA 7 1_555 B DC 13 1_555 C DG 6 1_555 0.019 -0.602 3.819 -0.512 7.394 24.290 -3.808 -0.213 3.484 17.071 1.182 25.379 12 PP_DT12DC13:DG5DA6_TT P 12 ? T 6 ? P 13 ? T 5 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'CALCIUM ION' CA 5 "ADENOSINE-5'-TRIPHOSPHATE" ATP 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1JX4 _pdbx_initial_refinement_model.details 'PDB ENTRY 1JX4' #