data_3PZZ # _entry.id 3PZZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3PZZ pdb_00003pzz 10.2210/pdb3pzz/pdb RCSB RCSB063021 ? ? WWPDB D_1000063021 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-10-12 2 'Structure model' 1 1 2011-11-30 3 'Structure model' 1 2 2017-09-13 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Structure summary' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' entity 2 3 'Structure model' entity_name_com 3 3 'Structure model' pdbx_entity_src_syn 4 3 'Structure model' struct_ref 5 3 'Structure model' struct_ref_seq 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_entity.pdbx_description' 2 3 'Structure model' '_entity.pdbx_fragment' 3 3 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 4 3 'Structure model' '_pdbx_entity_src_syn.organism_common_name' 5 3 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 6 3 'Structure model' '_pdbx_entity_src_syn.pdbx_beg_seq_num' 7 3 'Structure model' '_pdbx_entity_src_syn.pdbx_end_seq_num' 8 3 'Structure model' '_struct_ref.db_code' 9 3 'Structure model' '_struct_ref.db_name' 10 3 'Structure model' '_struct_ref.pdbx_align_begin' 11 3 'Structure model' '_struct_ref.pdbx_db_accession' 12 3 'Structure model' '_struct_ref_seq.db_align_beg' 13 3 'Structure model' '_struct_ref_seq.db_align_end' 14 3 'Structure model' '_struct_ref_seq.pdbx_db_accession' 15 4 'Structure model' '_database_2.pdbx_DOI' 16 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 3PZZ _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-12-14 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Soriaga, A.B.' 1 'Laganowsky, A.L.' 2 'Sawaya, M.R.' 3 'Eisenberg, D.' 4 # _citation.id primary _citation.title 'Molecular basis for amyloid-beta polymorphism.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 108 _citation.page_first 16938 _citation.page_last 16943 _citation.year 2011 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21949245 _citation.pdbx_database_id_DOI 10.1073/pnas.1112600108 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Colletier, J.P.' 1 ? primary 'Laganowsky, A.' 2 ? primary 'Landau, M.' 3 ? primary 'Zhao, M.' 4 ? primary 'Soriaga, A.B.' 5 ? primary 'Goldschmidt, L.' 6 ? primary 'Flot, D.' 7 ? primary 'Cascio, D.' 8 ? primary 'Sawaya, M.R.' 9 ? primary 'Eisenberg, D.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Amyloid beta A4 protein' 542.670 2 ? ? 'GAIIGL hexapeptide segment (UNP residues 700-705)' ? 2 water nat water 18.015 9 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;ABPP,APPI,APP,Alzheimer disease amyloid protein,Amyloid precursor protein,Beta-amyloid precursor protein,Cerebral vascular amyloid peptide,CVAP,PreA4,Protease nexin-II,PN-II ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GAIIGL _entity_poly.pdbx_seq_one_letter_code_can GAIIGL _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 ILE n 1 4 ILE n 1 5 GLY n 1 6 LEU n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'GAIIGL (residues 29-34) from human Amyloid beta, synthesized' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 LEU 6 6 6 LEU LEU A . n B 1 1 GLY 1 1 1 GLY GLY B . n B 1 2 ALA 2 2 2 ALA ALA B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 ILE 4 4 4 ILE ILE B . n B 1 5 GLY 5 5 5 GLY GLY B . n B 1 6 LEU 6 6 6 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 7 7 HOH HOH A . C 2 HOH 2 8 4 HOH HOH A . C 2 HOH 3 9 5 HOH HOH A . D 2 HOH 1 7 1 HOH HOH B . D 2 HOH 2 8 8 HOH HOH B . D 2 HOH 3 9 9 HOH HOH B . D 2 HOH 4 10 2 HOH HOH B . D 2 HOH 5 11 3 HOH HOH B . D 2 HOH 6 12 6 HOH HOH B . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 PHENIX 1.6_289 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 ADSC Quantum ? ? ? ? 'data collection' ? ? ? # _cell.length_a 9.470 _cell.length_b 11.769 _cell.length_c 17.358 _cell.angle_alpha 99.830 _cell.angle_beta 95.630 _cell.angle_gamma 104.690 _cell.entry_id 3PZZ _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1' _symmetry.entry_id 3PZZ _symmetry.Int_Tables_number 1 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3PZZ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.68 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 26.79 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details ;reservoir contained 14.4% PEG 8000, 0.08 M Na Cacodylate pH 6.5, 0.16 M Calcium Acetate, 20% v/v Glycerol, vapor diffusion, hanging drop, temperature 291K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-04-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E # _reflns.entry_id 3PZZ _reflns.d_resolution_high 1.300 _reflns.d_resolution_low 100.000 _reflns.number_obs 1682 _reflns.pdbx_Rmerge_I_obs 0.118 _reflns.pdbx_netI_over_sigmaI 10.300 _reflns.pdbx_chi_squared 1.046 _reflns.pdbx_redundancy 5.500 _reflns.percent_possible_obs 95.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.300 1.350 ? ? ? 0.324 ? ? 1.152 4.800 ? 166 94.900 1 1 1.350 1.400 ? ? ? 0.291 ? ? 1.023 5.200 ? 161 93.600 2 1 1.400 1.460 ? ? ? 0.239 ? ? 1.030 5.600 ? 165 93.200 3 1 1.460 1.540 ? ? ? 0.198 ? ? 1.030 5.600 ? 163 96.400 4 1 1.540 1.640 ? ? ? 0.149 ? ? 1.022 5.700 ? 174 95.100 5 1 1.640 1.760 ? ? ? 0.152 ? ? 1.021 5.900 ? 161 96.400 6 1 1.760 1.940 ? ? ? 0.121 ? ? 1.027 5.900 ? 184 96.800 7 1 1.940 2.220 ? ? ? 0.097 ? ? 1.011 5.600 ? 162 97.000 8 1 2.220 2.800 ? ? ? 0.109 ? ? 1.068 5.700 ? 175 98.300 9 1 2.800 100.000 ? ? ? 0.081 ? ? 1.092 5.400 ? 171 97.700 10 1 # _refine.entry_id 3PZZ _refine.ls_d_res_high 1.2900 _refine.ls_d_res_low 9.0590 _refine.pdbx_ls_sigma_F 0.060 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 93.4600 _refine.ls_number_reflns_obs 1658 _refine.ls_number_reflns_all 1658 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details 'Random 10% of reflections' _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1475 _refine.ls_R_factor_R_work 0.1431 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1955 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 9.2900 _refine.ls_number_reflns_R_free 154 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 9.8154 _refine.solvent_model_param_bsol 300.0000 _refine.solvent_model_param_ksol 0.6000 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -2.1452 _refine.aniso_B[2][2] 2.8276 _refine.aniso_B[3][3] -1.0944 _refine.aniso_B[1][2] -1.0803 _refine.aniso_B[1][3] -1.3303 _refine.aniso_B[2][3] -1.4461 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1300 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8294 _refine.B_iso_max 33.480 _refine.B_iso_min 3.000 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 76 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 9 _refine_hist.number_atoms_total 85 _refine_hist.d_res_high 1.2900 _refine_hist.d_res_low 9.0590 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 74 0.008 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 98 1.179 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 14 0.055 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 12 0.003 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 24 7.156 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.2901 _refine_ls_shell.d_res_low ? _refine_ls_shell.pdbx_total_number_of_bins_used 1 _refine_ls_shell.percent_reflns_obs 93.0000 _refine_ls_shell.number_reflns_R_work 1504 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.1431 _refine_ls_shell.R_factor_R_free 0.1955 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 154 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1658 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3PZZ _struct.title 'Structure of an amyloid forming peptide GAIIGL (29-34) from amyloid beta' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PZZ _struct_keywords.text 'amyloid protofibril, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4_HUMAN _struct_ref.pdbx_db_accession P05067 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GAIIGL _struct_ref.pdbx_align_begin 700 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3PZZ A 1 ? 6 ? P05067 700 ? 705 ? 1 6 2 1 3PZZ B 1 ? 6 ? P05067 700 ? 705 ? 1 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 9.4700000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_755 x+2,y,z 1.0000000000 0.0000000000 0.0000000000 18.9400000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 -2.9844903609 0.0000000000 1.0000000000 0.0000000000 11.3842952476 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_665 x+1,y+1,z 1.0000000000 0.0000000000 0.0000000000 6.4855096391 0.0000000000 1.0000000000 0.0000000000 11.3842952476 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 1_765 x+2,y+1,z 1.0000000000 0.0000000000 0.0000000000 15.9555096391 0.0000000000 1.0000000000 0.0000000000 11.3842952476 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ;The biological unit is a pair of beta sheets. One sheet is constructed from unit cell translations along the a direction (i.e. X+1,Y,Z; X+2,Y,Z; X+3,Y,Z, etc.). The other sheet is constructed from symmetry operators x,y+1,z; x+1,y+1,z; x+2,y+1,z; etc. ; # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 2 ? ILE A 4 ? ALA A 2 ILE A 4 A 2 ALA B 2 ? ILE B 4 ? ALA B 2 ILE B 4 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ILE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 3 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 3 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ILE _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 3 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 3 # _pdbx_phasing_MR.entry_id 3PZZ _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation ? _pdbx_phasing_MR.d_res_low_rotation ? _pdbx_phasing_MR.d_res_high_translation ? _pdbx_phasing_MR.d_res_low_translation ? _pdbx_phasing_MR.packing 0.000 _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 GLY N N N N 14 GLY CA C N N 15 GLY C C N N 16 GLY O O N N 17 GLY OXT O N N 18 GLY H H N N 19 GLY H2 H N N 20 GLY HA2 H N N 21 GLY HA3 H N N 22 GLY HXT H N N 23 HOH O O N N 24 HOH H1 H N N 25 HOH H2 H N N 26 ILE N N N N 27 ILE CA C N S 28 ILE C C N N 29 ILE O O N N 30 ILE CB C N S 31 ILE CG1 C N N 32 ILE CG2 C N N 33 ILE CD1 C N N 34 ILE OXT O N N 35 ILE H H N N 36 ILE H2 H N N 37 ILE HA H N N 38 ILE HB H N N 39 ILE HG12 H N N 40 ILE HG13 H N N 41 ILE HG21 H N N 42 ILE HG22 H N N 43 ILE HG23 H N N 44 ILE HD11 H N N 45 ILE HD12 H N N 46 ILE HD13 H N N 47 ILE HXT H N N 48 LEU N N N N 49 LEU CA C N S 50 LEU C C N N 51 LEU O O N N 52 LEU CB C N N 53 LEU CG C N N 54 LEU CD1 C N N 55 LEU CD2 C N N 56 LEU OXT O N N 57 LEU H H N N 58 LEU H2 H N N 59 LEU HA H N N 60 LEU HB2 H N N 61 LEU HB3 H N N 62 LEU HG H N N 63 LEU HD11 H N N 64 LEU HD12 H N N 65 LEU HD13 H N N 66 LEU HD21 H N N 67 LEU HD22 H N N 68 LEU HD23 H N N 69 LEU HXT H N N 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 GLY N CA sing N N 13 GLY N H sing N N 14 GLY N H2 sing N N 15 GLY CA C sing N N 16 GLY CA HA2 sing N N 17 GLY CA HA3 sing N N 18 GLY C O doub N N 19 GLY C OXT sing N N 20 GLY OXT HXT sing N N 21 HOH O H1 sing N N 22 HOH O H2 sing N N 23 ILE N CA sing N N 24 ILE N H sing N N 25 ILE N H2 sing N N 26 ILE CA C sing N N 27 ILE CA CB sing N N 28 ILE CA HA sing N N 29 ILE C O doub N N 30 ILE C OXT sing N N 31 ILE CB CG1 sing N N 32 ILE CB CG2 sing N N 33 ILE CB HB sing N N 34 ILE CG1 CD1 sing N N 35 ILE CG1 HG12 sing N N 36 ILE CG1 HG13 sing N N 37 ILE CG2 HG21 sing N N 38 ILE CG2 HG22 sing N N 39 ILE CG2 HG23 sing N N 40 ILE CD1 HD11 sing N N 41 ILE CD1 HD12 sing N N 42 ILE CD1 HD13 sing N N 43 ILE OXT HXT sing N N 44 LEU N CA sing N N 45 LEU N H sing N N 46 LEU N H2 sing N N 47 LEU CA C sing N N 48 LEU CA CB sing N N 49 LEU CA HA sing N N 50 LEU C O doub N N 51 LEU C OXT sing N N 52 LEU CB CG sing N N 53 LEU CB HB2 sing N N 54 LEU CB HB3 sing N N 55 LEU CG CD1 sing N N 56 LEU CG CD2 sing N N 57 LEU CG HG sing N N 58 LEU CD1 HD11 sing N N 59 LEU CD1 HD12 sing N N 60 LEU CD1 HD13 sing N N 61 LEU CD2 HD21 sing N N 62 LEU CD2 HD22 sing N N 63 LEU CD2 HD23 sing N N 64 LEU OXT HXT sing N N 65 # _atom_sites.entry_id 3PZZ _atom_sites.fract_transf_matrix[1][1] 0.105597 _atom_sites.fract_transf_matrix[1][2] 0.027679 _atom_sites.fract_transf_matrix[1][3] 0.016382 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.087840 _atom_sites.fract_transf_matrix[2][3] 0.018227 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.059123 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_