data_3Q0B # _entry.id 3Q0B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3Q0B NDB NA0901 RCSB RCSB063033 WWPDB D_1000063033 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3Q0C 'Crystal structure of SUVH5 SRA-fully methylated CG DNA in space group P6122' unspecified PDB 3Q0D 'Crystal structure of SUVH5 SRA-hemi methylated CG complex' unspecified PDB 3Q0F 'Crystal structure of SUVH5 SRA-methylated CHH DNA complex' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3Q0B _pdbx_database_status.recvd_initial_deposition_date 2010-12-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Eerappa, R.' 1 'Simanshu, D.K.' 2 'Patel, D.J.' 3 # _citation.id primary _citation.title ;A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo. ; _citation.journal_abbrev 'Genes Dev.' _citation.journal_volume 25 _citation.page_first 137 _citation.page_last 152 _citation.year 2011 _citation.journal_id_ASTM GEDEEP _citation.country US _citation.journal_id_ISSN 0890-9369 _citation.journal_id_CSD 2056 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21245167 _citation.pdbx_database_id_DOI 10.1101/gad.1980311 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Rajakumara, E.' 1 primary 'Law, J.A.' 2 primary 'Simanshu, D.K.' 3 primary 'Voigt, P.' 4 primary 'Johnson, L.M.' 5 primary 'Reinberg, D.' 6 primary 'Patel, D.J.' 7 primary 'Jacobsen, S.E.' 8 # _cell.entry_id 3Q0B _cell.length_a 76.566 _cell.length_b 76.566 _cell.length_c 73.904 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3Q0B _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5' 18609.711 1 2.1.1.43 ? 'SUVH5 SRA Domain (UNP Residues 362-528)' ? 2 polymer syn ;DNA (5'-D(*AP*CP*TP*AP*(5CM)P*GP*TP*AP*GP*T)-3') ; 3058.043 1 ? ? ? 'Self complementary fully methylated CG DNA' 3 water nat water 18.015 63 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Histone H3-K9 methyltransferase 5, H3-K9-HMTase 5, Protein SET DOMAIN GROUP 9, Suppressor of variegation 3-9 homolog protein 5, Su(var)3-9 homolog protein 5 ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;QIIGTVPGVEVGDEFQYR(MSE)ELNLLGIHRPSQSGIDY(MSE)KDDGGELVATSIVSSGGYNDVLDNSDVLIYTGQGG NVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKL RRIPGQPELPWKEVA ; ;QIIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGYNDVLDNSDVLIYTGQGGNVGKKKNN EPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPE LPWKEVA ; X ? 2 polydeoxyribonucleotide no yes '(DA)(DC)(DT)(DA)(5CM)(DG)(DT)(DA)(DG)(DT)' ACTACGTAGT A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ILE n 1 3 ILE n 1 4 GLY n 1 5 THR n 1 6 VAL n 1 7 PRO n 1 8 GLY n 1 9 VAL n 1 10 GLU n 1 11 VAL n 1 12 GLY n 1 13 ASP n 1 14 GLU n 1 15 PHE n 1 16 GLN n 1 17 TYR n 1 18 ARG n 1 19 MSE n 1 20 GLU n 1 21 LEU n 1 22 ASN n 1 23 LEU n 1 24 LEU n 1 25 GLY n 1 26 ILE n 1 27 HIS n 1 28 ARG n 1 29 PRO n 1 30 SER n 1 31 GLN n 1 32 SER n 1 33 GLY n 1 34 ILE n 1 35 ASP n 1 36 TYR n 1 37 MSE n 1 38 LYS n 1 39 ASP n 1 40 ASP n 1 41 GLY n 1 42 GLY n 1 43 GLU n 1 44 LEU n 1 45 VAL n 1 46 ALA n 1 47 THR n 1 48 SER n 1 49 ILE n 1 50 VAL n 1 51 SER n 1 52 SER n 1 53 GLY n 1 54 GLY n 1 55 TYR n 1 56 ASN n 1 57 ASP n 1 58 VAL n 1 59 LEU n 1 60 ASP n 1 61 ASN n 1 62 SER n 1 63 ASP n 1 64 VAL n 1 65 LEU n 1 66 ILE n 1 67 TYR n 1 68 THR n 1 69 GLY n 1 70 GLN n 1 71 GLY n 1 72 GLY n 1 73 ASN n 1 74 VAL n 1 75 GLY n 1 76 LYS n 1 77 LYS n 1 78 LYS n 1 79 ASN n 1 80 ASN n 1 81 GLU n 1 82 PRO n 1 83 PRO n 1 84 LYS n 1 85 ASP n 1 86 GLN n 1 87 GLN n 1 88 LEU n 1 89 VAL n 1 90 THR n 1 91 GLY n 1 92 ASN n 1 93 LEU n 1 94 ALA n 1 95 LEU n 1 96 LYS n 1 97 ASN n 1 98 SER n 1 99 ILE n 1 100 ASN n 1 101 LYS n 1 102 LYS n 1 103 ASN n 1 104 PRO n 1 105 VAL n 1 106 ARG n 1 107 VAL n 1 108 ILE n 1 109 ARG n 1 110 GLY n 1 111 ILE n 1 112 LYS n 1 113 ASN n 1 114 THR n 1 115 THR n 1 116 LEU n 1 117 GLN n 1 118 SER n 1 119 SER n 1 120 VAL n 1 121 VAL n 1 122 ALA n 1 123 LYS n 1 124 ASN n 1 125 TYR n 1 126 VAL n 1 127 TYR n 1 128 ASP n 1 129 GLY n 1 130 LEU n 1 131 TYR n 1 132 LEU n 1 133 VAL n 1 134 GLU n 1 135 GLU n 1 136 TYR n 1 137 TRP n 1 138 GLU n 1 139 GLU n 1 140 THR n 1 141 GLY n 1 142 SER n 1 143 HIS n 1 144 GLY n 1 145 LYS n 1 146 LEU n 1 147 VAL n 1 148 PHE n 1 149 LYS n 1 150 PHE n 1 151 LYS n 1 152 LEU n 1 153 ARG n 1 154 ARG n 1 155 ILE n 1 156 PRO n 1 157 GLY n 1 158 GLN n 1 159 PRO n 1 160 GLU n 1 161 LEU n 1 162 PRO n 1 163 TRP n 1 164 LYS n 1 165 GLU n 1 166 VAL n 1 167 ALA n 2 1 DA n 2 2 DC n 2 3 DT n 2 4 DA n 2 5 5CM n 2 6 DG n 2 7 DT n 2 8 DA n 2 9 DG n 2 10 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'mouse-ear cress,thale-cress' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'At2g35160, SDG9, SET9, SUVH5, T4C15.17' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'Cleavable N-terminal His-Sumo Tag' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'rosetta2 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pETSumo _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Chemically Synthesized' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SUVH5_ARATH O82175 1 ;QIIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGYNDVLDNSDVLIYTGQGGNVGKKKNN EPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPE LPWKEVA ; 362 ? 2 PDB 3Q0B 3Q0B 2 ACTACGTAGT 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3Q0B X 1 ? 167 ? O82175 362 ? 528 ? 362 528 2 2 3Q0B A 1 ? 10 ? 3Q0B 1 ? 10 ? 1 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3Q0B _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.50 _exptl_crystal.density_percent_sol 50.79 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '19% PEG 4000, 100 mM Tris-HCl, pH 7.5 and 40 mM CaCl2, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 ? ? 1 3 ? ? 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details 'cryogenecally-cooled double crystal Si(111) monochromoter' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Cryo-cooled Si(111) double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97918 1.0 2 0.97929 1.0 3 0.9900 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97918,0.97929,0.9900 # _reflns.entry_id 3Q0B _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.2 _reflns.number_obs 11770 _reflns.number_all 11805 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.047 _reflns.pdbx_Rsym_value 0.051 _reflns.pdbx_netI_over_sigmaI 49.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 11.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.51 _reflns_shell.pdbx_Rsym_value 0.52 _reflns_shell.meanI_over_sigI_obs 4.2 _reflns_shell.pdbx_redundancy 11.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3Q0B _refine.ls_number_reflns_obs 11770 _refine.ls_number_reflns_all 11800 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.89 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.587 _refine.ls_d_res_high 2.200 _refine.ls_percent_reflns_obs 99.67 _refine.ls_R_factor_obs 0.2184 _refine.ls_R_factor_all 0.22 _refine.ls_R_factor_R_work 0.2167 _refine.ls_R_factor_R_free 0.2518 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.96 _refine.ls_number_reflns_R_free 1055 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -1.0718 _refine.aniso_B[2][2] -1.0718 _refine.aniso_B[3][3] 2.1437 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.351 _refine.solvent_model_param_bsol 65.015 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.59 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error 26.74 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1136 _refine_hist.pdbx_number_atoms_nucleic_acid 203 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 63 _refine_hist.number_atoms_total 1402 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 26.587 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 1383 'X-RAY DIFFRACTION' ? f_angle_d 1.198 ? ? 1911 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 19.052 ? ? 528 'X-RAY DIFFRACTION' ? f_chiral_restr 0.065 ? ? 206 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 215 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.2000 2.3001 2498 0.2952 99.00 0.3632 . . 145 . . . . 'X-RAY DIFFRACTION' . 2.3001 2.4213 2539 0.2464 100.00 0.2937 . . 130 . . . . 'X-RAY DIFFRACTION' . 2.4213 2.5729 2513 0.2343 100.00 0.3138 . . 142 . . . . 'X-RAY DIFFRACTION' . 2.5729 2.7713 2532 0.2366 100.00 0.2550 . . 133 . . . . 'X-RAY DIFFRACTION' . 2.7713 3.0499 2561 0.2420 100.00 0.3417 . . 112 . . . . 'X-RAY DIFFRACTION' . 3.0499 3.4904 2504 0.2110 100.00 0.2342 . . 146 . . . . 'X-RAY DIFFRACTION' . 3.4904 4.3943 2532 0.1780 100.00 0.2198 . . 126 . . . . 'X-RAY DIFFRACTION' . 4.3943 26.5890 2515 0.1978 99.00 0.2013 . . 121 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3Q0B _struct.title 'Crystal structure of SUVH5 SRA- fully methylated CG DNA complex in space group P42212' _struct.pdbx_descriptor 'Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 (E.C.2.1.1.43)/DNA Complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3Q0B _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'SRA, fully methylated CG, SUVH5, 5mC binding protein, Fully methylated CG duplex DNA, TRANSFERASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 17 ? LEU A 24 ? TYR X 378 LEU X 385 1 ? 8 HELX_P HELX_P2 2 VAL A 89 ? LYS A 102 ? VAL X 450 LYS X 463 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ARG 18 C ? ? ? 1_555 A MSE 19 N ? ? X ARG 379 X MSE 380 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A MSE 19 C ? ? ? 1_555 A GLU 20 N ? ? X MSE 380 X GLU 381 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A TYR 36 C ? ? ? 1_555 A MSE 37 N ? ? X TYR 397 X MSE 398 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale ? ? A MSE 37 C ? ? ? 1_555 A LYS 38 N ? ? X MSE 398 X LYS 399 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale ? ? B DA 4 "O3'" ? ? ? 1_555 B 5CM 5 P ? ? A DA 4 A 5CM 5 1_555 ? ? ? ? ? ? ? 1.612 ? covale6 covale ? ? B 5CM 5 "O3'" ? ? ? 1_555 B DG 6 P ? ? A 5CM 5 A DG 6 1_555 ? ? ? ? ? ? ? 1.612 ? hydrog1 hydrog ? ? B DA 1 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 1 A DT 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B DA 1 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 1 A DT 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 A DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 A DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 A DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DT 3 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 3 A DA 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DT 3 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 3 A DA 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DA 4 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 4 A DT 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DA 4 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 4 A DT 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DT 7 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 7 A DA 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DT 7 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 7 A DA 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DA 8 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 8 A DT 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DA 8 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 8 A DT 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DT 10 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 10 A DA 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DT 10 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 10 A DA 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 14 ? PHE A 15 ? GLU X 375 PHE X 376 A 2 TYR A 125 ? THR A 140 ? TYR X 486 THR X 501 A 3 VAL A 105 ? GLY A 110 ? VAL X 466 GLY X 471 A 4 LEU A 44 ? SER A 51 ? LEU X 405 SER X 412 A 5 ILE A 34 ? LYS A 38 ? ILE X 395 LYS X 399 B 1 GLU A 14 ? PHE A 15 ? GLU X 375 PHE X 376 B 2 TYR A 125 ? THR A 140 ? TYR X 486 THR X 501 B 3 LEU A 146 ? ARG A 154 ? LEU X 507 ARG X 515 B 4 VAL A 64 ? THR A 68 ? VAL X 425 THR X 429 B 5 VAL A 58 ? LEU A 59 ? VAL X 419 LEU X 420 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 15 ? N PHE X 376 O TYR A 125 ? O TYR X 486 A 2 3 O ASP A 128 ? O ASP X 489 N VAL A 107 ? N VAL X 468 A 3 4 O GLY A 110 ? O GLY X 471 N SER A 51 ? N SER X 412 A 4 5 O THR A 47 ? O THR X 408 N ASP A 35 ? N ASP X 396 B 1 2 N PHE A 15 ? N PHE X 376 O TYR A 125 ? O TYR X 486 B 2 3 N GLU A 134 ? N GLU X 495 O LYS A 151 ? O LYS X 512 B 3 4 O LEU A 152 ? O LEU X 513 N LEU A 65 ? N LEU X 426 B 4 5 O ILE A 66 ? O ILE X 427 N VAL A 58 ? N VAL X 419 # _database_PDB_matrix.entry_id 3Q0B _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3Q0B _atom_sites.fract_transf_matrix[1][1] 0.013061 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013061 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013531 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 362 362 GLN GLN X . n A 1 2 ILE 2 363 363 ILE ILE X . n A 1 3 ILE 3 364 364 ILE ILE X . n A 1 4 GLY 4 365 365 GLY GLY X . n A 1 5 THR 5 366 366 THR THR X . n A 1 6 VAL 6 367 367 VAL VAL X . n A 1 7 PRO 7 368 368 PRO PRO X . n A 1 8 GLY 8 369 369 GLY GLY X . n A 1 9 VAL 9 370 370 VAL VAL X . n A 1 10 GLU 10 371 371 GLU GLU X . n A 1 11 VAL 11 372 372 VAL VAL X . n A 1 12 GLY 12 373 373 GLY GLY X . n A 1 13 ASP 13 374 374 ASP ASP X . n A 1 14 GLU 14 375 375 GLU GLU X . n A 1 15 PHE 15 376 376 PHE PHE X . n A 1 16 GLN 16 377 377 GLN GLN X . n A 1 17 TYR 17 378 378 TYR TYR X . n A 1 18 ARG 18 379 379 ARG ARG X . n A 1 19 MSE 19 380 380 MSE MSE X . n A 1 20 GLU 20 381 381 GLU GLU X . n A 1 21 LEU 21 382 382 LEU LEU X . n A 1 22 ASN 22 383 383 ASN ASN X . n A 1 23 LEU 23 384 384 LEU LEU X . n A 1 24 LEU 24 385 385 LEU LEU X . n A 1 25 GLY 25 386 386 GLY GLY X . n A 1 26 ILE 26 387 387 ILE ILE X . n A 1 27 HIS 27 388 388 HIS HIS X . n A 1 28 ARG 28 389 389 ARG ARG X . n A 1 29 PRO 29 390 390 PRO PRO X . n A 1 30 SER 30 391 391 SER SER X . n A 1 31 GLN 31 392 392 GLN GLN X . n A 1 32 SER 32 393 393 SER SER X . n A 1 33 GLY 33 394 394 GLY GLY X . n A 1 34 ILE 34 395 395 ILE ILE X . n A 1 35 ASP 35 396 396 ASP ASP X . n A 1 36 TYR 36 397 397 TYR TYR X . n A 1 37 MSE 37 398 398 MSE MSE X . n A 1 38 LYS 38 399 399 LYS LYS X . n A 1 39 ASP 39 400 400 ASP ASP X . n A 1 40 ASP 40 401 401 ASP ASP X . n A 1 41 GLY 41 402 402 GLY GLY X . n A 1 42 GLY 42 403 403 GLY GLY X . n A 1 43 GLU 43 404 404 GLU GLU X . n A 1 44 LEU 44 405 405 LEU LEU X . n A 1 45 VAL 45 406 406 VAL VAL X . n A 1 46 ALA 46 407 407 ALA ALA X . n A 1 47 THR 47 408 408 THR THR X . n A 1 48 SER 48 409 409 SER SER X . n A 1 49 ILE 49 410 410 ILE ILE X . n A 1 50 VAL 50 411 411 VAL VAL X . n A 1 51 SER 51 412 412 SER SER X . n A 1 52 SER 52 413 413 SER SER X . n A 1 53 GLY 53 414 414 GLY GLY X . n A 1 54 GLY 54 415 415 GLY GLY X . n A 1 55 TYR 55 416 416 TYR TYR X . n A 1 56 ASN 56 417 417 ASN ASN X . n A 1 57 ASP 57 418 418 ASP ASP X . n A 1 58 VAL 58 419 419 VAL VAL X . n A 1 59 LEU 59 420 420 LEU LEU X . n A 1 60 ASP 60 421 421 ASP ASP X . n A 1 61 ASN 61 422 422 ASN ASN X . n A 1 62 SER 62 423 423 SER SER X . n A 1 63 ASP 63 424 424 ASP ASP X . n A 1 64 VAL 64 425 425 VAL VAL X . n A 1 65 LEU 65 426 426 LEU LEU X . n A 1 66 ILE 66 427 427 ILE ILE X . n A 1 67 TYR 67 428 428 TYR TYR X . n A 1 68 THR 68 429 429 THR THR X . n A 1 69 GLY 69 430 430 GLY GLY X . n A 1 70 GLN 70 431 431 GLN GLN X . n A 1 71 GLY 71 432 432 GLY GLY X . n A 1 72 GLY 72 433 433 GLY GLY X . n A 1 73 ASN 73 434 434 ASN ASN X . n A 1 74 VAL 74 435 435 VAL VAL X . n A 1 75 GLY 75 436 436 GLY GLY X . n A 1 76 LYS 76 437 ? ? ? X . n A 1 77 LYS 77 438 ? ? ? X . n A 1 78 LYS 78 439 ? ? ? X . n A 1 79 ASN 79 440 ? ? ? X . n A 1 80 ASN 80 441 ? ? ? X . n A 1 81 GLU 81 442 442 GLU ALA X . n A 1 82 PRO 82 443 443 PRO PRO X . n A 1 83 PRO 83 444 444 PRO PRO X . n A 1 84 LYS 84 445 445 LYS LYS X . n A 1 85 ASP 85 446 446 ASP ASP X . n A 1 86 GLN 86 447 447 GLN GLN X . n A 1 87 GLN 87 448 448 GLN GLN X . n A 1 88 LEU 88 449 449 LEU LEU X . n A 1 89 VAL 89 450 450 VAL VAL X . n A 1 90 THR 90 451 451 THR THR X . n A 1 91 GLY 91 452 452 GLY GLY X . n A 1 92 ASN 92 453 453 ASN ASN X . n A 1 93 LEU 93 454 454 LEU LEU X . n A 1 94 ALA 94 455 455 ALA ALA X . n A 1 95 LEU 95 456 456 LEU LEU X . n A 1 96 LYS 96 457 457 LYS LYS X . n A 1 97 ASN 97 458 458 ASN ASN X . n A 1 98 SER 98 459 459 SER SER X . n A 1 99 ILE 99 460 460 ILE ILE X . n A 1 100 ASN 100 461 461 ASN ASN X . n A 1 101 LYS 101 462 462 LYS LYS X . n A 1 102 LYS 102 463 463 LYS LYS X . n A 1 103 ASN 103 464 464 ASN ASN X . n A 1 104 PRO 104 465 465 PRO PRO X . n A 1 105 VAL 105 466 466 VAL VAL X . n A 1 106 ARG 106 467 467 ARG ARG X . n A 1 107 VAL 107 468 468 VAL VAL X . n A 1 108 ILE 108 469 469 ILE ILE X . n A 1 109 ARG 109 470 470 ARG ARG X . n A 1 110 GLY 110 471 471 GLY GLY X . n A 1 111 ILE 111 472 472 ILE ILE X . n A 1 112 LYS 112 473 473 LYS LYS X . n A 1 113 ASN 113 474 ? ? ? X . n A 1 114 THR 114 475 ? ? ? X . n A 1 115 THR 115 476 ? ? ? X . n A 1 116 LEU 116 477 ? ? ? X . n A 1 117 GLN 117 478 ? ? ? X . n A 1 118 SER 118 479 ? ? ? X . n A 1 119 SER 119 480 ? ? ? X . n A 1 120 VAL 120 481 ? ? ? X . n A 1 121 VAL 121 482 ? ? ? X . n A 1 122 ALA 122 483 ? ? ? X . n A 1 123 LYS 123 484 484 LYS LYS X . n A 1 124 ASN 124 485 485 ASN ASN X . n A 1 125 TYR 125 486 486 TYR TYR X . n A 1 126 VAL 126 487 487 VAL VAL X . n A 1 127 TYR 127 488 488 TYR TYR X . n A 1 128 ASP 128 489 489 ASP ASP X . n A 1 129 GLY 129 490 490 GLY GLY X . n A 1 130 LEU 130 491 491 LEU LEU X . n A 1 131 TYR 131 492 492 TYR TYR X . n A 1 132 LEU 132 493 493 LEU LEU X . n A 1 133 VAL 133 494 494 VAL VAL X . n A 1 134 GLU 134 495 495 GLU GLU X . n A 1 135 GLU 135 496 496 GLU GLU X . n A 1 136 TYR 136 497 497 TYR TYR X . n A 1 137 TRP 137 498 498 TRP TRP X . n A 1 138 GLU 138 499 499 GLU GLU X . n A 1 139 GLU 139 500 500 GLU GLU X . n A 1 140 THR 140 501 501 THR THR X . n A 1 141 GLY 141 502 502 GLY GLY X . n A 1 142 SER 142 503 503 SER SER X . n A 1 143 HIS 143 504 504 HIS HIS X . n A 1 144 GLY 144 505 505 GLY GLY X . n A 1 145 LYS 145 506 506 LYS LYS X . n A 1 146 LEU 146 507 507 LEU LEU X . n A 1 147 VAL 147 508 508 VAL VAL X . n A 1 148 PHE 148 509 509 PHE PHE X . n A 1 149 LYS 149 510 510 LYS LYS X . n A 1 150 PHE 150 511 511 PHE PHE X . n A 1 151 LYS 151 512 512 LYS LYS X . n A 1 152 LEU 152 513 513 LEU LEU X . n A 1 153 ARG 153 514 514 ARG ARG X . n A 1 154 ARG 154 515 515 ARG ARG X . n A 1 155 ILE 155 516 516 ILE ILE X . n A 1 156 PRO 156 517 517 PRO PRO X . n A 1 157 GLY 157 518 518 GLY GLY X . n A 1 158 GLN 158 519 519 GLN GLN X . n A 1 159 PRO 159 520 520 PRO PRO X . n A 1 160 GLU 160 521 521 GLU GLU X . n A 1 161 LEU 161 522 522 LEU LEU X . n A 1 162 PRO 162 523 523 PRO PRO X . n A 1 163 TRP 163 524 524 TRP TRP X . n A 1 164 LYS 164 525 ? ? ? X . n A 1 165 GLU 165 526 ? ? ? X . n A 1 166 VAL 166 527 ? ? ? X . n A 1 167 ALA 167 528 ? ? ? X . n B 2 1 DA 1 1 1 DA DA A . n B 2 2 DC 2 2 2 DC DC A . n B 2 3 DT 3 3 3 DT DT A . n B 2 4 DA 4 4 4 DA DA A . n B 2 5 5CM 5 5 5 5CM 5CM A . n B 2 6 DG 6 6 6 DG DG A . n B 2 7 DT 7 7 7 DT DT A . n B 2 8 DA 8 8 8 DA DA A . n B 2 9 DG 9 9 9 DG DG A . n B 2 10 DT 10 10 10 DT DT A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 19 X MSE 380 ? MET SELENOMETHIONINE 2 A MSE 37 X MSE 398 ? MET SELENOMETHIONINE 3 B 5CM 5 A 5CM 5 ? DC ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5150 ? 1 MORE -8 ? 1 'SSA (A^2)' 16150 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-02 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 SHARP phasing . ? 2 PHENIX refinement '(phenix.refine)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 12 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 61 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.15 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE1 _pdbx_validate_symm_contact.auth_asym_id_1 X _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 496 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OE1 _pdbx_validate_symm_contact.auth_asym_id_2 X _pdbx_validate_symm_contact.auth_comp_id_2 GLU _pdbx_validate_symm_contact.auth_seq_id_2 496 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_565 _pdbx_validate_symm_contact.dist 2.16 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 110.61 108.30 2.31 0.30 N 2 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.50 108.30 3.20 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN X 392 ? ? -130.73 -35.77 2 1 ASP X 401 ? ? -59.57 97.42 3 1 SER X 409 ? ? -172.68 146.38 4 1 SER X 413 ? ? -142.38 31.06 5 1 THR X 451 ? ? 51.99 -132.86 6 1 SER X 503 ? ? -68.06 17.01 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 X ASP 401 ? CB ? A ASP 40 CB 2 1 Y 1 X ASP 401 ? CG ? A ASP 40 CG 3 1 Y 1 X ASP 401 ? OD1 ? A ASP 40 OD1 4 1 Y 1 X ASP 401 ? OD2 ? A ASP 40 OD2 5 1 Y 1 X GLU 404 ? CG ? A GLU 43 CG 6 1 Y 1 X GLU 404 ? CD ? A GLU 43 CD 7 1 Y 1 X GLU 404 ? OE1 ? A GLU 43 OE1 8 1 Y 1 X GLU 404 ? OE2 ? A GLU 43 OE2 9 1 Y 1 X GLU 442 ? CG ? A GLU 81 CG 10 1 Y 1 X GLU 442 ? CD ? A GLU 81 CD 11 1 Y 1 X GLU 442 ? OE1 ? A GLU 81 OE1 12 1 Y 1 X GLU 442 ? OE2 ? A GLU 81 OE2 13 1 Y 1 X LYS 473 ? CG ? A LYS 112 CG 14 1 Y 1 X LYS 473 ? CD ? A LYS 112 CD 15 1 Y 1 X LYS 473 ? CE ? A LYS 112 CE 16 1 Y 1 X LYS 473 ? NZ ? A LYS 112 NZ 17 1 Y 1 X TRP 524 ? CG ? A TRP 163 CG 18 1 Y 1 X TRP 524 ? CD1 ? A TRP 163 CD1 19 1 Y 1 X TRP 524 ? CD2 ? A TRP 163 CD2 20 1 Y 1 X TRP 524 ? NE1 ? A TRP 163 NE1 21 1 Y 1 X TRP 524 ? CE2 ? A TRP 163 CE2 22 1 Y 1 X TRP 524 ? CE3 ? A TRP 163 CE3 23 1 Y 1 X TRP 524 ? CZ2 ? A TRP 163 CZ2 24 1 Y 1 X TRP 524 ? CZ3 ? A TRP 163 CZ3 25 1 Y 1 X TRP 524 ? CH2 ? A TRP 163 CH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 X LYS 437 ? A LYS 76 2 1 Y 1 X LYS 438 ? A LYS 77 3 1 Y 1 X LYS 439 ? A LYS 78 4 1 Y 1 X ASN 440 ? A ASN 79 5 1 Y 1 X ASN 441 ? A ASN 80 6 1 Y 1 X ASN 474 ? A ASN 113 7 1 Y 1 X THR 475 ? A THR 114 8 1 Y 1 X THR 476 ? A THR 115 9 1 Y 1 X LEU 477 ? A LEU 116 10 1 Y 1 X GLN 478 ? A GLN 117 11 1 Y 1 X SER 479 ? A SER 118 12 1 Y 1 X SER 480 ? A SER 119 13 1 Y 1 X VAL 481 ? A VAL 120 14 1 Y 1 X VAL 482 ? A VAL 121 15 1 Y 1 X ALA 483 ? A ALA 122 16 1 Y 1 X LYS 525 ? A LYS 164 17 1 Y 1 X GLU 526 ? A GLU 165 18 1 Y 1 X VAL 527 ? A VAL 166 19 1 Y 1 X ALA 528 ? A ALA 167 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3Q0B 'b-form double helix' 3Q0B 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 1 1_555 B DT 10 7_555 -0.304 -0.139 -0.364 -11.310 -4.977 -0.128 1 A_DA1:DT10_A A 1 ? A 10 ? 20 1 1 B DC 2 1_555 B DG 9 7_555 0.091 -0.112 0.030 -0.004 -6.461 -0.593 2 A_DC2:DG9_A A 2 ? A 9 ? 19 1 1 B DT 3 1_555 B DA 8 7_555 -0.573 -0.061 0.117 3.993 -4.536 -0.067 3 A_DT3:DA8_A A 3 ? A 8 ? 20 1 1 B DA 4 1_555 B DT 7 7_555 0.095 -0.231 0.090 14.603 -9.471 2.250 4 A_DA4:DT7_A A 4 ? A 7 ? 20 1 1 B DA 1 1_555 B DT 10 1_555 -0.304 -0.139 -0.364 -11.310 -4.977 -0.128 5 A_DA1:DT10_A A 1 ? A 10 ? 20 1 1 B DC 2 1_555 B DG 9 1_555 0.091 -0.112 0.030 -0.004 -6.461 -0.593 6 A_DC2:DG9_A A 2 ? A 9 ? 19 1 1 B DT 3 1_555 B DA 8 1_555 -0.573 -0.061 0.117 3.993 -4.536 -0.067 7 A_DT3:DA8_A A 3 ? A 8 ? 20 1 1 B DA 4 1_555 B DT 7 1_555 0.095 -0.231 0.090 14.603 -9.471 2.250 8 A_DA4:DT7_A A 4 ? A 7 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 1 1_555 B DT 10 7_555 B DC 2 1_555 B DG 9 7_555 0.303 -0.427 3.072 -2.376 1.840 28.897 -1.227 -1.091 3.006 3.675 4.744 29.049 1 AA_DA1DC2:DG9DT10_AA A 1 ? A 10 ? A 2 ? A 9 ? 1 B DC 2 1_555 B DG 9 7_555 B DT 3 1_555 B DA 8 7_555 -0.141 -0.367 3.267 1.213 -1.584 29.958 -0.382 0.521 3.274 -3.060 -2.344 30.023 2 AA_DC2DT3:DA8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 1 B DT 3 1_555 B DA 8 7_555 B DA 4 1_555 B DT 7 7_555 1.015 -0.008 3.080 4.127 6.629 34.752 -0.940 -1.084 3.122 10.928 -6.804 35.592 3 AA_DT3DA4:DT7DA8_AA A 3 ? A 8 ? A 4 ? A 7 ? 1 B DA 1 1_555 B DT 10 1_555 B DC 2 1_555 B DG 9 1_555 0.303 -0.427 3.072 -2.376 1.840 28.897 -1.227 -1.091 3.006 3.675 4.744 29.049 4 AA_DA1DC2:DG9DT10_AA A 1 ? A 10 ? A 2 ? A 9 ? 1 B DC 2 1_555 B DG 9 1_555 B DT 3 1_555 B DA 8 1_555 -0.141 -0.367 3.267 1.213 -1.584 29.958 -0.382 0.521 3.274 -3.060 -2.344 30.023 5 AA_DC2DT3:DA8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 1 B DT 3 1_555 B DA 8 1_555 B DA 4 1_555 B DT 7 1_555 1.015 -0.008 3.080 4.127 6.629 34.752 -0.940 -1.084 3.122 10.928 -6.804 35.592 6 AA_DT3DA4:DT7DA8_AA A 3 ? A 8 ? A 4 ? A 7 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 2 2 HOH HOH X . C 3 HOH 2 3 3 HOH HOH X . C 3 HOH 3 4 4 HOH HOH X . C 3 HOH 4 6 6 HOH HOH X . C 3 HOH 5 7 7 HOH HOH X . C 3 HOH 6 8 8 HOH HOH X . C 3 HOH 7 10 10 HOH HOH X . C 3 HOH 8 12 12 HOH HOH X . C 3 HOH 9 14 14 HOH HOH X . C 3 HOH 10 15 15 HOH HOH X . C 3 HOH 11 17 17 HOH HOH X . C 3 HOH 12 18 18 HOH HOH X . C 3 HOH 13 20 20 HOH HOH X . C 3 HOH 14 21 21 HOH HOH X . C 3 HOH 15 22 22 HOH HOH X . C 3 HOH 16 23 23 HOH HOH X . C 3 HOH 17 24 24 HOH HOH X . C 3 HOH 18 25 25 HOH HOH X . C 3 HOH 19 26 26 HOH HOH X . C 3 HOH 20 27 27 HOH HOH X . C 3 HOH 21 28 28 HOH HOH X . C 3 HOH 22 29 29 HOH HOH X . C 3 HOH 23 30 30 HOH HOH X . C 3 HOH 24 34 34 HOH HOH X . C 3 HOH 25 35 35 HOH HOH X . C 3 HOH 26 36 36 HOH HOH X . C 3 HOH 27 38 38 HOH HOH X . C 3 HOH 28 40 40 HOH HOH X . C 3 HOH 29 41 41 HOH HOH X . C 3 HOH 30 42 42 HOH HOH X . C 3 HOH 31 43 43 HOH HOH X . C 3 HOH 32 44 44 HOH HOH X . C 3 HOH 33 45 45 HOH HOH X . C 3 HOH 34 46 46 HOH HOH X . C 3 HOH 35 47 47 HOH HOH X . C 3 HOH 36 48 48 HOH HOH X . C 3 HOH 37 50 50 HOH HOH X . C 3 HOH 38 52 52 HOH HOH X . C 3 HOH 39 53 53 HOH HOH X . C 3 HOH 40 54 54 HOH HOH X . C 3 HOH 41 55 55 HOH HOH X . C 3 HOH 42 58 58 HOH HOH X . C 3 HOH 43 59 59 HOH HOH X . C 3 HOH 44 62 62 HOH HOH X . D 3 HOH 1 11 11 HOH HOH A . D 3 HOH 2 12 1 HOH HOH A . D 3 HOH 3 13 13 HOH HOH A . D 3 HOH 4 14 5 HOH HOH A . D 3 HOH 5 15 9 HOH HOH A . D 3 HOH 6 16 16 HOH HOH A . D 3 HOH 7 19 19 HOH HOH A . D 3 HOH 8 31 31 HOH HOH A . D 3 HOH 9 32 32 HOH HOH A . D 3 HOH 10 33 33 HOH HOH A . D 3 HOH 11 37 37 HOH HOH A . D 3 HOH 12 39 39 HOH HOH A . D 3 HOH 13 49 49 HOH HOH A . D 3 HOH 14 51 51 HOH HOH A . D 3 HOH 15 56 56 HOH HOH A . D 3 HOH 16 57 57 HOH HOH A . D 3 HOH 17 60 60 HOH HOH A . D 3 HOH 18 61 61 HOH HOH A . D 3 HOH 19 63 63 HOH HOH A . #