HEADER RNA BINDING PROTEIN 27-JAN-11 3QIR TITLE CRYSTAL STRUCTURE OF PIWIL2 PAZ DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PIWI-LIKE PROTEIN 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: PAZ DOMAIN, RSIDUES 386-533; COMPND 5 SYNONYM: CANCER/TESTIS ANTIGEN 80, CT80; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIWIL2, HILI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS RIL (STRATAGENE); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS STRUCTURAL GENOMICS CONSORTIUM, SGC, PAZ DOMAIN, RNAI, RNA BINDING, KEYWDS 2 RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,C.XU,C.BIAN,A.K.WERNIMONT,J.KANIA,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 C.BOUNTRA,J.WEIGELT,J.MIN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 21-FEB-24 3QIR 1 REMARK REVDAT 1 16-FEB-11 3QIR 0 JRNL AUTH C.XU,A.DONG,C.BIAN,A.K.WERNIMONT,J.KANIA,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,J.MIN JRNL TITL CRYSTAL STRUCTURE OF PIWIL2 PAZ DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 24246 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1006 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.56 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2730 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2798 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2607 REMARK 3 BIN R VALUE (WORKING SET) : 0.2789 REMARK 3 BIN FREE R VALUE : 0.3007 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.51 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 123 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3290 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -16.91740 REMARK 3 B22 (A**2) : -4.31530 REMARK 3 B33 (A**2) : 21.23260 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.573 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3359 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 4579 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 1072 ; 2.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 85 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 496 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 3359 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 466 ; 5.000 ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3481 ; 4.000 ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.86 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.99 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -1.9905 -34.2243 40.7769 REMARK 3 T TENSOR REMARK 3 T11: 0.2837 T22: 0.0069 REMARK 3 T33: -0.3602 T12: -0.3040 REMARK 3 T13: 0.0045 T23: 0.0680 REMARK 3 L TENSOR REMARK 3 L11: 0.0666 L22: 2.1619 REMARK 3 L33: 7.4745 L12: -0.4603 REMARK 3 L13: -2.8906 L23: -0.4251 REMARK 3 S TENSOR REMARK 3 S11: -0.5566 S12: 0.3720 S13: 0.2184 REMARK 3 S21: -0.1229 S22: 0.5318 S23: 0.3393 REMARK 3 S31: 1.0885 S32: -0.5041 S33: 0.0248 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 5.7705 -18.1515 15.0225 REMARK 3 T TENSOR REMARK 3 T11: 0.0193 T22: -0.2010 REMARK 3 T33: -0.1800 T12: -0.1096 REMARK 3 T13: 0.0125 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.4469 L22: 0.7297 REMARK 3 L33: 9.6928 L12: -0.4210 REMARK 3 L13: 2.8202 L23: 1.5324 REMARK 3 S TENSOR REMARK 3 S11: 0.4899 S12: -0.0735 S13: -0.0573 REMARK 3 S21: 0.0522 S22: -0.0234 S23: -0.1346 REMARK 3 S31: 0.6871 S32: 0.0319 S33: -0.4665 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 0.0774 -16.4020 -16.4003 REMARK 3 T TENSOR REMARK 3 T11: 0.0508 T22: -0.1827 REMARK 3 T33: -0.2379 T12: 0.1974 REMARK 3 T13: 0.0270 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 1.1546 L22: 1.0555 REMARK 3 L33: 8.7080 L12: -1.5807 REMARK 3 L13: 3.5549 L23: -3.2506 REMARK 3 S TENSOR REMARK 3 S11: 0.5326 S12: 0.2286 S13: -0.0698 REMARK 3 S21: -0.5456 S22: -0.2966 S23: 0.2712 REMARK 3 S31: 0.3434 S32: 0.7202 S33: -0.2359 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): -16.9165 -0.3998 -39.0422 REMARK 3 T TENSOR REMARK 3 T11: -0.1249 T22: -0.1352 REMARK 3 T33: -0.0957 T12: 0.0770 REMARK 3 T13: -0.0321 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.4399 L22: 0.8049 REMARK 3 L33: 8.2761 L12: -0.0228 REMARK 3 L13: 3.6156 L23: 0.5591 REMARK 3 S TENSOR REMARK 3 S11: -0.0880 S12: 0.1793 S13: -0.0313 REMARK 3 S21: 0.0214 S22: 0.0458 S23: 0.0113 REMARK 3 S31: -0.1141 S32: 0.4408 S33: 0.0422 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QIR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000063696. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28286 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24387 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 38.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.85400 REMARK 200 R SYM FOR SHELL (I) : 0.85400 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NAI, 20% PEG 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.46700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 112.46700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.77400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.64550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.77400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.64550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 112.46700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.77400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.64550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 112.46700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.77400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.64550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 112.46700 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -41.54800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -112.46700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 1 REMARK 465 HIS A 98 REMARK 465 GLY A 99 REMARK 465 MET A 100 REMARK 465 GLY A 117 REMARK 465 ILE A 118 REMARK 465 PRO A 119 REMARK 465 GLU A 120 REMARK 465 LYS A 121 REMARK 465 MET A 122 REMARK 465 LYS A 123 REMARK 465 LYS A 124 REMARK 465 ASP A 125 REMARK 465 PHE A 126 REMARK 465 ARG A 127 REMARK 465 ALA A 128 REMARK 465 MET A 129 REMARK 465 LYS A 130 REMARK 465 ASP A 131 REMARK 465 LEU A 132 REMARK 465 ALA A 133 REMARK 465 GLN A 134 REMARK 465 GLN A 135 REMARK 465 ILE A 136 REMARK 465 ASN A 137 REMARK 465 LEU A 138 REMARK 465 SER A 139 REMARK 465 PRO A 140 REMARK 465 LYS A 141 REMARK 465 GLN A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 SER A 145 REMARK 465 ALA A 146 REMARK 465 LEU A 147 REMARK 465 GLU A 148 REMARK 465 ARG B 1 REMARK 465 ASN B 2 REMARK 465 SER B 92 REMARK 465 GLU B 93 REMARK 465 ARG B 94 REMARK 465 GLN B 95 REMARK 465 ASP B 96 REMARK 465 ASN B 97 REMARK 465 HIS B 98 REMARK 465 GLY B 99 REMARK 465 MET B 100 REMARK 465 LEU B 101 REMARK 465 LEU B 102 REMARK 465 LYS B 103 REMARK 465 PRO B 119 REMARK 465 GLU B 120 REMARK 465 LYS B 121 REMARK 465 MET B 122 REMARK 465 LYS B 123 REMARK 465 LYS B 124 REMARK 465 ASP B 125 REMARK 465 PHE B 126 REMARK 465 ARG B 127 REMARK 465 ALA B 128 REMARK 465 MET B 129 REMARK 465 LYS B 130 REMARK 465 ASP B 131 REMARK 465 LEU B 132 REMARK 465 ALA B 133 REMARK 465 GLN B 134 REMARK 465 GLN B 135 REMARK 465 ILE B 136 REMARK 465 ASN B 137 REMARK 465 LEU B 138 REMARK 465 SER B 139 REMARK 465 PRO B 140 REMARK 465 LYS B 141 REMARK 465 GLN B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 SER B 145 REMARK 465 ALA B 146 REMARK 465 LEU B 147 REMARK 465 GLU B 148 REMARK 465 SER C 92 REMARK 465 GLU C 93 REMARK 465 ARG C 94 REMARK 465 GLN C 95 REMARK 465 ASP C 96 REMARK 465 ASN C 97 REMARK 465 HIS C 98 REMARK 465 GLY C 99 REMARK 465 MET C 100 REMARK 465 LEU C 101 REMARK 465 LEU C 102 REMARK 465 LYS C 103 REMARK 465 GLY C 104 REMARK 465 PRO C 119 REMARK 465 GLU C 120 REMARK 465 LYS C 121 REMARK 465 MET C 122 REMARK 465 LYS C 123 REMARK 465 LYS C 124 REMARK 465 ASP C 125 REMARK 465 PHE C 126 REMARK 465 ARG C 127 REMARK 465 ALA C 128 REMARK 465 MET C 129 REMARK 465 LYS C 130 REMARK 465 ASP C 131 REMARK 465 LEU C 132 REMARK 465 ALA C 133 REMARK 465 GLN C 134 REMARK 465 GLN C 135 REMARK 465 ILE C 136 REMARK 465 ASN C 137 REMARK 465 LEU C 138 REMARK 465 SER C 139 REMARK 465 PRO C 140 REMARK 465 LYS C 141 REMARK 465 GLN C 142 REMARK 465 HIS C 143 REMARK 465 HIS C 144 REMARK 465 SER C 145 REMARK 465 ALA C 146 REMARK 465 LEU C 147 REMARK 465 GLU C 148 REMARK 465 ARG D 1 REMARK 465 ASN D 2 REMARK 465 SER D 92 REMARK 465 PRO D 119 REMARK 465 GLU D 120 REMARK 465 LYS D 121 REMARK 465 MET D 122 REMARK 465 LYS D 123 REMARK 465 LYS D 124 REMARK 465 ASP D 125 REMARK 465 PHE D 126 REMARK 465 ARG D 127 REMARK 465 ALA D 128 REMARK 465 MET D 129 REMARK 465 LYS D 130 REMARK 465 ASP D 131 REMARK 465 LEU D 132 REMARK 465 ALA D 133 REMARK 465 GLN D 134 REMARK 465 GLN D 135 REMARK 465 ILE D 136 REMARK 465 ASN D 137 REMARK 465 LEU D 138 REMARK 465 SER D 139 REMARK 465 PRO D 140 REMARK 465 LYS D 141 REMARK 465 GLN D 142 REMARK 465 HIS D 143 REMARK 465 HIS D 144 REMARK 465 SER D 145 REMARK 465 ALA D 146 REMARK 465 LEU D 147 REMARK 465 GLU D 148 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS A 4 SG REMARK 470 VAL A 8 CG1 CG2 REMARK 470 MET A 9 CG SD CE REMARK 470 GLN A 15 CG CD OE1 NE2 REMARK 470 LYS A 17 CD CE NZ REMARK 470 ASP A 22 CG OD1 OD2 REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 LEU A 27 CG CD1 CD2 REMARK 470 LEU A 28 CG CD1 CD2 REMARK 470 VAL A 29 CG1 CG2 REMARK 470 ASN A 31 CG OD1 ND2 REMARK 470 ILE A 32 CG1 CG2 CD1 REMARK 470 ILE A 34 CG1 CG2 CD1 REMARK 470 THR A 35 OG1 CG2 REMARK 470 ARG A 36 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 38 CG OD1 ND2 REMARK 470 ASN A 39 CG OD1 ND2 REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 THR A 41 OG1 CG2 REMARK 470 ARG A 43 CZ NH1 NH2 REMARK 470 VAL A 47 CG1 CG2 REMARK 470 LYS A 51 CD CE NZ REMARK 470 LYS A 54 CE NZ REMARK 470 THR A 58 OG1 CG2 REMARK 470 ILE A 65 CD1 REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 ILE A 77 CD1 REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 ASP A 83 CG OD1 OD2 REMARK 470 ILE A 88 CD1 REMARK 470 ARG A 90 CD NE CZ NH1 NH2 REMARK 470 SER A 92 OG REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 ARG A 94 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 96 CG OD1 OD2 REMARK 470 ASN A 97 CG OD1 ND2 REMARK 470 LEU A 101 CG CD1 CD2 REMARK 470 LYS A 103 CD CE NZ REMARK 470 LEU A 112 CD1 REMARK 470 MET A 115 SD CE REMARK 470 THR A 116 OG1 CG2 REMARK 470 ASP B 3 CG OD1 OD2 REMARK 470 ILE B 12 CD1 REMARK 470 GLN B 14 CD OE1 NE2 REMARK 470 GLN B 15 CD OE1 NE2 REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 GLU B 23 OE1 OE2 REMARK 470 LYS B 26 CD CE NZ REMARK 470 ILE B 34 CG1 CD1 REMARK 470 ILE B 44 CD1 REMARK 470 LYS B 51 CD CE NZ REMARK 470 SER B 56 OG REMARK 470 LYS B 63 NZ REMARK 470 SER B 72 OG REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 GLU B 81 CG CD OE1 OE2 REMARK 470 ASP B 83 CG OD1 OD2 REMARK 470 ILE B 88 CD1 REMARK 470 ILE B 106 CD1 REMARK 470 ILE B 118 CG1 CG2 CD1 REMARK 470 ARG C 1 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 2 CG OD1 ND2 REMARK 470 ASP C 3 CG OD1 OD2 REMARK 470 LEU C 6 CD1 CD2 REMARK 470 ILE C 12 CG1 CG2 CD1 REMARK 470 GLN C 15 CD OE1 NE2 REMARK 470 GLU C 18 CG CD OE1 OE2 REMARK 470 LYS C 26 CG CD CE NZ REMARK 470 VAL C 29 CG1 CG2 REMARK 470 ILE C 32 CG1 CG2 CD1 REMARK 470 VAL C 33 CG1 CG2 REMARK 470 ILE C 34 CG1 CG2 CD1 REMARK 470 THR C 35 OG1 CG2 REMARK 470 ARG C 40 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 43 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 44 CG2 CD1 REMARK 470 VAL C 47 CG1 CG2 REMARK 470 LYS C 51 CG CD CE NZ REMARK 470 LYS C 54 CE NZ REMARK 470 ASP C 55 OD1 OD2 REMARK 470 ILE C 65 CG1 CG2 CD1 REMARK 470 GLU C 69 CG CD OE1 OE2 REMARK 470 LYS C 73 CG CD CE NZ REMARK 470 LYS C 80 CE NZ REMARK 470 GLU C 81 CG CD OE1 OE2 REMARK 470 ASP C 83 CG OD1 OD2 REMARK 470 ILE C 88 CG1 CG2 CD1 REMARK 470 GLU C 105 CG CD OE1 OE2 REMARK 470 ILE C 106 CD1 REMARK 470 GLU D 18 CG CD OE1 OE2 REMARK 470 LYS D 26 CG CD CE NZ REMARK 470 ILE D 32 CD1 REMARK 470 ILE D 34 CG1 CD1 REMARK 470 LYS D 51 NZ REMARK 470 LYS D 54 CD CE NZ REMARK 470 THR D 58 OG1 CG2 REMARK 470 LYS D 63 NZ REMARK 470 GLU D 64 CD OE1 OE2 REMARK 470 ILE D 65 CD1 REMARK 470 GLU D 69 CG CD OE1 OE2 REMARK 470 SER D 72 OG REMARK 470 LYS D 73 CG CD CE NZ REMARK 470 LYS D 80 CG CD CE NZ REMARK 470 ASP D 83 CG OD1 OD2 REMARK 470 GLU D 93 CG CD OE1 OE2 REMARK 470 MET D 100 CG SD CE REMARK 470 LEU D 101 CG CD1 CD2 REMARK 470 ILE D 118 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 93 55.32 -156.95 REMARK 500 THR B 116 -84.07 -118.48 REMARK 500 ASN C 2 1.97 -150.21 REMARK 500 REMARK 500 REMARK: NULL DBREF 3QIR A 1 148 UNP Q8TC59 PIWL2_HUMAN 386 533 DBREF 3QIR B 1 148 UNP Q8TC59 PIWL2_HUMAN 386 533 DBREF 3QIR C 1 148 UNP Q8TC59 PIWL2_HUMAN 386 533 DBREF 3QIR D 1 148 UNP Q8TC59 PIWL2_HUMAN 386 533 SEQRES 1 A 148 ARG ASN ASP CYS VAL LEU ASP VAL MET HIS ALA ILE TYR SEQRES 2 A 148 GLN GLN ASN LYS GLU HIS PHE GLN ASP GLU CYS THR LYS SEQRES 3 A 148 LEU LEU VAL GLY ASN ILE VAL ILE THR ARG TYR ASN ASN SEQRES 4 A 148 ARG THR TYR ARG ILE ASP ASP VAL ASP TRP ASN LYS THR SEQRES 5 A 148 PRO LYS ASP SER PHE THR MET SER ASP GLY LYS GLU ILE SEQRES 6 A 148 THR PHE LEU GLU TYR TYR SER LYS ASN TYR GLY ILE THR SEQRES 7 A 148 VAL LYS GLU GLU ASP GLN PRO LEU LEU ILE HIS ARG PRO SEQRES 8 A 148 SER GLU ARG GLN ASP ASN HIS GLY MET LEU LEU LYS GLY SEQRES 9 A 148 GLU ILE LEU LEU LEU PRO GLU LEU SER PHE MET THR GLY SEQRES 10 A 148 ILE PRO GLU LYS MET LYS LYS ASP PHE ARG ALA MET LYS SEQRES 11 A 148 ASP LEU ALA GLN GLN ILE ASN LEU SER PRO LYS GLN HIS SEQRES 12 A 148 HIS SER ALA LEU GLU SEQRES 1 B 148 ARG ASN ASP CYS VAL LEU ASP VAL MET HIS ALA ILE TYR SEQRES 2 B 148 GLN GLN ASN LYS GLU HIS PHE GLN ASP GLU CYS THR LYS SEQRES 3 B 148 LEU LEU VAL GLY ASN ILE VAL ILE THR ARG TYR ASN ASN SEQRES 4 B 148 ARG THR TYR ARG ILE ASP ASP VAL ASP TRP ASN LYS THR SEQRES 5 B 148 PRO LYS ASP SER PHE THR MET SER ASP GLY LYS GLU ILE SEQRES 6 B 148 THR PHE LEU GLU TYR TYR SER LYS ASN TYR GLY ILE THR SEQRES 7 B 148 VAL LYS GLU GLU ASP GLN PRO LEU LEU ILE HIS ARG PRO SEQRES 8 B 148 SER GLU ARG GLN ASP ASN HIS GLY MET LEU LEU LYS GLY SEQRES 9 B 148 GLU ILE LEU LEU LEU PRO GLU LEU SER PHE MET THR GLY SEQRES 10 B 148 ILE PRO GLU LYS MET LYS LYS ASP PHE ARG ALA MET LYS SEQRES 11 B 148 ASP LEU ALA GLN GLN ILE ASN LEU SER PRO LYS GLN HIS SEQRES 12 B 148 HIS SER ALA LEU GLU SEQRES 1 C 148 ARG ASN ASP CYS VAL LEU ASP VAL MET HIS ALA ILE TYR SEQRES 2 C 148 GLN GLN ASN LYS GLU HIS PHE GLN ASP GLU CYS THR LYS SEQRES 3 C 148 LEU LEU VAL GLY ASN ILE VAL ILE THR ARG TYR ASN ASN SEQRES 4 C 148 ARG THR TYR ARG ILE ASP ASP VAL ASP TRP ASN LYS THR SEQRES 5 C 148 PRO LYS ASP SER PHE THR MET SER ASP GLY LYS GLU ILE SEQRES 6 C 148 THR PHE LEU GLU TYR TYR SER LYS ASN TYR GLY ILE THR SEQRES 7 C 148 VAL LYS GLU GLU ASP GLN PRO LEU LEU ILE HIS ARG PRO SEQRES 8 C 148 SER GLU ARG GLN ASP ASN HIS GLY MET LEU LEU LYS GLY SEQRES 9 C 148 GLU ILE LEU LEU LEU PRO GLU LEU SER PHE MET THR GLY SEQRES 10 C 148 ILE PRO GLU LYS MET LYS LYS ASP PHE ARG ALA MET LYS SEQRES 11 C 148 ASP LEU ALA GLN GLN ILE ASN LEU SER PRO LYS GLN HIS SEQRES 12 C 148 HIS SER ALA LEU GLU SEQRES 1 D 148 ARG ASN ASP CYS VAL LEU ASP VAL MET HIS ALA ILE TYR SEQRES 2 D 148 GLN GLN ASN LYS GLU HIS PHE GLN ASP GLU CYS THR LYS SEQRES 3 D 148 LEU LEU VAL GLY ASN ILE VAL ILE THR ARG TYR ASN ASN SEQRES 4 D 148 ARG THR TYR ARG ILE ASP ASP VAL ASP TRP ASN LYS THR SEQRES 5 D 148 PRO LYS ASP SER PHE THR MET SER ASP GLY LYS GLU ILE SEQRES 6 D 148 THR PHE LEU GLU TYR TYR SER LYS ASN TYR GLY ILE THR SEQRES 7 D 148 VAL LYS GLU GLU ASP GLN PRO LEU LEU ILE HIS ARG PRO SEQRES 8 D 148 SER GLU ARG GLN ASP ASN HIS GLY MET LEU LEU LYS GLY SEQRES 9 D 148 GLU ILE LEU LEU LEU PRO GLU LEU SER PHE MET THR GLY SEQRES 10 D 148 ILE PRO GLU LYS MET LYS LYS ASP PHE ARG ALA MET LYS SEQRES 11 D 148 ASP LEU ALA GLN GLN ILE ASN LEU SER PRO LYS GLN HIS SEQRES 12 D 148 HIS SER ALA LEU GLU HELIX 1 1 CYS A 4 VAL A 29 1 26 HELIX 2 2 PHE A 67 GLY A 76 1 10 HELIX 3 3 LEU A 109 GLU A 111 5 3 HELIX 4 4 CYS B 4 VAL B 29 1 26 HELIX 5 5 PHE B 67 GLY B 76 1 10 HELIX 6 6 LEU B 109 GLU B 111 5 3 HELIX 7 7 CYS C 4 VAL C 29 1 26 HELIX 8 8 PHE C 67 GLY C 76 1 10 HELIX 9 9 LEU C 109 GLU C 111 5 3 HELIX 10 10 CYS D 4 VAL D 29 1 26 HELIX 11 11 PHE D 67 GLY D 76 1 10 SHEET 1 A 3 THR A 41 ARG A 43 0 SHEET 2 A 3 ILE A 32 THR A 35 -1 N VAL A 33 O TYR A 42 SHEET 3 A 3 SER A 113 PHE A 114 -1 O PHE A 114 N ILE A 34 SHEET 1 B 3 ASP A 46 ASP A 48 0 SHEET 2 B 3 LEU A 86 HIS A 89 -1 O LEU A 86 N ASP A 48 SHEET 3 B 3 ILE A 106 LEU A 108 -1 O LEU A 108 N LEU A 87 SHEET 1 C 2 SER A 56 THR A 58 0 SHEET 2 C 2 GLU A 64 THR A 66 -1 O ILE A 65 N PHE A 57 SHEET 1 D 3 ARG B 40 ARG B 43 0 SHEET 2 D 3 ILE B 32 THR B 35 -1 N VAL B 33 O TYR B 42 SHEET 3 D 3 SER B 113 MET B 115 -1 O PHE B 114 N ILE B 34 SHEET 1 E 3 ASP B 46 ASP B 48 0 SHEET 2 E 3 LEU B 86 HIS B 89 -1 O ILE B 88 N ASP B 46 SHEET 3 E 3 ILE B 106 LEU B 108 -1 O LEU B 108 N LEU B 87 SHEET 1 F 2 SER B 56 THR B 58 0 SHEET 2 F 2 GLU B 64 THR B 66 -1 O ILE B 65 N PHE B 57 SHEET 1 G 3 THR C 41 ARG C 43 0 SHEET 2 G 3 ILE C 32 THR C 35 -1 N VAL C 33 O TYR C 42 SHEET 3 G 3 SER C 113 MET C 115 -1 O PHE C 114 N ILE C 34 SHEET 1 H 3 ASP C 46 ASP C 48 0 SHEET 2 H 3 LEU C 86 HIS C 89 -1 O LEU C 86 N ASP C 48 SHEET 3 H 3 ILE C 106 LEU C 108 -1 O LEU C 108 N LEU C 87 SHEET 1 I 2 SER C 56 THR C 58 0 SHEET 2 I 2 GLU C 64 THR C 66 -1 O ILE C 65 N PHE C 57 SHEET 1 J 3 ARG D 40 ARG D 43 0 SHEET 2 J 3 ILE D 32 THR D 35 -1 N VAL D 33 O TYR D 42 SHEET 3 J 3 SER D 113 GLY D 117 -1 O GLY D 117 N ILE D 32 SHEET 1 K 3 ASP D 46 ASP D 48 0 SHEET 2 K 3 LEU D 86 HIS D 89 -1 O ILE D 88 N ASP D 46 SHEET 3 K 3 ILE D 106 LEU D 108 -1 O ILE D 106 N HIS D 89 SHEET 1 L 2 SER D 56 THR D 58 0 SHEET 2 L 2 GLU D 64 THR D 66 -1 O ILE D 65 N PHE D 57 CISPEP 1 GLY C 117 ILE C 118 0 -3.51 CRYST1 41.548 139.291 224.934 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024069 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004446 0.00000