data_3QLP # _entry.id 3QLP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3QLP NDB NA0972 RCSB RCSB063802 WWPDB D_1000063802 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3QLP _pdbx_database_status.recvd_initial_deposition_date 2011-02-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Russo Krauss, I.' 1 'Merlino, A.' 2 'Mazzarella, L.' 3 'Sica, F.' 4 # _citation.id primary _citation.title 'Thrombin-aptamer recognition: a revealed ambiguity.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 39 _citation.page_first 7858 _citation.page_last 7867 _citation.year 2011 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21715374 _citation.pdbx_database_id_DOI 10.1093/nar/gkr522 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Russo Krauss, I.' 1 ? primary 'Merlino, A.' 2 ? primary 'Giancola, C.' 3 ? primary 'Randazzo, A.' 4 ? primary 'Mazzarella, L.' 5 ? primary 'Sica, F.' 6 ? # _cell.entry_id 3QLP _cell.length_a 68.208 _cell.length_b 110.574 _cell.length_c 120.916 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3QLP _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Thrombin heavy chain' 29780.219 1 3.4.21.5 ? ? ? 2 polymer man 'Thrombin light chain' 4096.534 1 3.4.21.5 ? ? ? 3 polymer syn 'modified thrombin binding DNA aptamer' 4743.051 1 ? ? ? ? 4 non-polymer syn 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' 453.986 1 ? ? ? ? 5 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 6 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 7 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 8 water nat water 18.015 251 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; H ? 2 'polypeptide(L)' no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L ? 3 polydeoxyribonucleotide no no '(DG)(DG)(DT)(DT)(DG)(DG)(DT)(DG)(DT)(DG)(DG)(DT)(DT)(DG)(DG)' GGTTGGTGTGGTTGG D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 VAL n 1 3 GLU n 1 4 GLY n 1 5 SER n 1 6 ASP n 1 7 ALA n 1 8 GLU n 1 9 ILE n 1 10 GLY n 1 11 MET n 1 12 SER n 1 13 PRO n 1 14 TRP n 1 15 GLN n 1 16 VAL n 1 17 MET n 1 18 LEU n 1 19 PHE n 1 20 ARG n 1 21 LYS n 1 22 SER n 1 23 PRO n 1 24 GLN n 1 25 GLU n 1 26 LEU n 1 27 LEU n 1 28 CYS n 1 29 GLY n 1 30 ALA n 1 31 SER n 1 32 LEU n 1 33 ILE n 1 34 SER n 1 35 ASP n 1 36 ARG n 1 37 TRP n 1 38 VAL n 1 39 LEU n 1 40 THR n 1 41 ALA n 1 42 ALA n 1 43 HIS n 1 44 CYS n 1 45 LEU n 1 46 LEU n 1 47 TYR n 1 48 PRO n 1 49 PRO n 1 50 TRP n 1 51 ASP n 1 52 LYS n 1 53 ASN n 1 54 PHE n 1 55 THR n 1 56 GLU n 1 57 ASN n 1 58 ASP n 1 59 LEU n 1 60 LEU n 1 61 VAL n 1 62 ARG n 1 63 ILE n 1 64 GLY n 1 65 LYS n 1 66 HIS n 1 67 SER n 1 68 ARG n 1 69 THR n 1 70 ARG n 1 71 TYR n 1 72 GLU n 1 73 ARG n 1 74 ASN n 1 75 ILE n 1 76 GLU n 1 77 LYS n 1 78 ILE n 1 79 SER n 1 80 MET n 1 81 LEU n 1 82 GLU n 1 83 LYS n 1 84 ILE n 1 85 TYR n 1 86 ILE n 1 87 HIS n 1 88 PRO n 1 89 ARG n 1 90 TYR n 1 91 ASN n 1 92 TRP n 1 93 ARG n 1 94 GLU n 1 95 ASN n 1 96 LEU n 1 97 ASP n 1 98 ARG n 1 99 ASP n 1 100 ILE n 1 101 ALA n 1 102 LEU n 1 103 MET n 1 104 LYS n 1 105 LEU n 1 106 LYS n 1 107 LYS n 1 108 PRO n 1 109 VAL n 1 110 ALA n 1 111 PHE n 1 112 SER n 1 113 ASP n 1 114 TYR n 1 115 ILE n 1 116 HIS n 1 117 PRO n 1 118 VAL n 1 119 CYS n 1 120 LEU n 1 121 PRO n 1 122 ASP n 1 123 ARG n 1 124 GLU n 1 125 THR n 1 126 ALA n 1 127 ALA n 1 128 SER n 1 129 LEU n 1 130 LEU n 1 131 GLN n 1 132 ALA n 1 133 GLY n 1 134 TYR n 1 135 LYS n 1 136 GLY n 1 137 ARG n 1 138 VAL n 1 139 THR n 1 140 GLY n 1 141 TRP n 1 142 GLY n 1 143 ASN n 1 144 LEU n 1 145 LYS n 1 146 GLU n 1 147 THR n 1 148 TRP n 1 149 THR n 1 150 ALA n 1 151 ASN n 1 152 VAL n 1 153 GLY n 1 154 LYS n 1 155 GLY n 1 156 GLN n 1 157 PRO n 1 158 SER n 1 159 VAL n 1 160 LEU n 1 161 GLN n 1 162 VAL n 1 163 VAL n 1 164 ASN n 1 165 LEU n 1 166 PRO n 1 167 ILE n 1 168 VAL n 1 169 GLU n 1 170 ARG n 1 171 PRO n 1 172 VAL n 1 173 CYS n 1 174 LYS n 1 175 ASP n 1 176 SER n 1 177 THR n 1 178 ARG n 1 179 ILE n 1 180 ARG n 1 181 ILE n 1 182 THR n 1 183 ASP n 1 184 ASN n 1 185 MET n 1 186 PHE n 1 187 CYS n 1 188 ALA n 1 189 GLY n 1 190 TYR n 1 191 LYS n 1 192 PRO n 1 193 ASP n 1 194 GLU n 1 195 GLY n 1 196 LYS n 1 197 ARG n 1 198 GLY n 1 199 ASP n 1 200 ALA n 1 201 CYS n 1 202 GLU n 1 203 GLY n 1 204 ASP n 1 205 SER n 1 206 GLY n 1 207 GLY n 1 208 PRO n 1 209 PHE n 1 210 VAL n 1 211 MET n 1 212 LYS n 1 213 SER n 1 214 PRO n 1 215 PHE n 1 216 ASN n 1 217 ASN n 1 218 ARG n 1 219 TRP n 1 220 TYR n 1 221 GLN n 1 222 MET n 1 223 GLY n 1 224 ILE n 1 225 VAL n 1 226 SER n 1 227 TRP n 1 228 GLY n 1 229 GLU n 1 230 GLY n 1 231 CYS n 1 232 ASP n 1 233 ARG n 1 234 ASP n 1 235 GLY n 1 236 LYS n 1 237 TYR n 1 238 GLY n 1 239 PHE n 1 240 TYR n 1 241 THR n 1 242 HIS n 1 243 VAL n 1 244 PHE n 1 245 ARG n 1 246 LEU n 1 247 LYS n 1 248 LYS n 1 249 TRP n 1 250 ILE n 1 251 GLN n 1 252 LYS n 1 253 VAL n 1 254 ILE n 1 255 ASP n 1 256 GLN n 1 257 PHE n 1 258 GLY n 1 259 GLU n 2 1 THR n 2 2 PHE n 2 3 GLY n 2 4 SER n 2 5 GLY n 2 6 GLU n 2 7 ALA n 2 8 ASP n 2 9 CYS n 2 10 GLY n 2 11 LEU n 2 12 ARG n 2 13 PRO n 2 14 LEU n 2 15 PHE n 2 16 GLU n 2 17 LYS n 2 18 LYS n 2 19 SER n 2 20 LEU n 2 21 GLU n 2 22 ASP n 2 23 LYS n 2 24 THR n 2 25 GLU n 2 26 ARG n 2 27 GLU n 2 28 LEU n 2 29 LEU n 2 30 GLU n 2 31 SER n 2 32 TYR n 2 33 ILE n 2 34 ASP n 2 35 GLY n 2 36 ARG n 3 1 DG n 3 2 DG n 3 3 DT n 3 4 DT n 3 5 DG n 3 6 DG n 3 7 DT n 3 8 DG n 3 9 DT n 3 10 DG n 3 11 DG n 3 12 DT n 3 13 DT n 3 14 DG n 3 15 DG n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? F2 ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? human ? F2 ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP THRB_HUMAN P00734 1 ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; 364 ? 2 UNP THRB_HUMAN P00734 2 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR 328 ? 3 PDB 3QLP 3QLP 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3QLP H 1 ? 259 ? P00734 364 ? 622 ? 16 247 2 2 3QLP L 1 H 36 ? P00734 328 ? 363 ? 1 16 3 3 3QLP D 1 ? 15 ? 3QLP 1 ? 15 ? 1 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0G6 peptide-like . 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' PPACK 'C21 H34 Cl N6 O3 1' 453.986 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3QLP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.95 _exptl_crystal.density_percent_sol 58.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.8 _exptl_crystal_grow.pdbx_details ;20% w/v PEG 20000, 0.2M ammonium sulfate, 3% n-propanol, 0.1 M sodium acetate pH 5.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 944+' _diffrn_detector.pdbx_collection_date 2009-04-07 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3QLP _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 25.1 _reflns.d_resolution_high 2.14 _reflns.number_obs 23642 _reflns.number_all 25096 _reflns.percent_possible_obs 93.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.14 _reflns_shell.d_res_low 2.23 _reflns_shell.percent_possible_all 93.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3QLP _refine.ls_number_reflns_obs 23642 _refine.ls_number_reflns_all 25096 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.1 _refine.ls_d_res_high 2.14 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.186 _refine.ls_R_factor_all 0.204 _refine.ls_R_factor_R_work 0.183 _refine.ls_R_factor_R_free 0.237 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 945 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2364 _refine_hist.pdbx_number_atoms_nucleic_acid 306 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 251 _refine_hist.number_atoms_total 2967 _refine_hist.d_res_high 2.14 _refine_hist.d_res_low 25.1 # _struct.entry_id 3QLP _struct.title 'X-ray structure of the complex between human alpha thrombin and a modified thrombin binding aptamer (mTBA)' _struct.pdbx_descriptor 'Thrombin heavy chain (E.C.3.4.21.5), Thrombin light chain (E.C.3.4.21.5), DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3QLP _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR/DNA' _struct_keywords.text 'PROTEIN-DNA COMPLEX, SERINE PROTEASE, BLOOD COAGULATION, aptamer, serine protease fold, HYDROLASE-HYDROLASE INHIBITOR-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 8 ? I N N 8 ? J N N 8 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 41 ? CYS A 44 ? ALA H 55 CYS H 58 5 ? 4 HELX_P HELX_P2 2 PRO A 48 B ASP A 51 E PRO H 60 ASP H 60 5 ? 4 HELX_P HELX_P3 3 THR A 55 I ASN A 57 ? THR H 60 ASN H 62 5 ? 3 HELX_P HELX_P4 4 ASP A 122 ? LEU A 130 ? ASP H 125 LEU H 130 1 ? 9 HELX_P HELX_P5 5 GLU A 169 ? SER A 176 ? GLU H 164 SER H 171 1 ? 8 HELX_P HELX_P6 6 LYS A 191 ? GLY A 195 C LYS H 185 GLY H 186 5 ? 5 HELX_P HELX_P7 7 LEU A 246 ? ASP A 255 ? LEU H 234 ASP H 243 1 ? 10 HELX_P HELX_P8 8 PHE B 15 ? SER B 19 ? PHE L 7 SER L 11 5 ? 5 HELX_P HELX_P9 9 THR B 24 B TYR B 32 J THR L 14 TYR L 14 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 44 SG ? ? H CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? 2.062 ? ? disulf2 disulf ? ? A CYS 119 SG ? ? ? 1_555 B CYS 9 SG ? ? H CYS 122 L CYS 1 1_555 ? ? ? ? ? ? ? 2.050 ? ? disulf3 disulf ? ? A CYS 173 SG ? ? ? 1_555 A CYS 187 SG ? ? H CYS 168 H CYS 182 1_555 ? ? ? ? ? ? ? 2.045 ? ? disulf4 disulf ? ? A CYS 201 SG ? ? ? 1_555 A CYS 231 SG ? ? H CYS 191 H CYS 220 1_555 ? ? ? ? ? ? ? 2.074 ? ? covale1 covale one ? D 0G6 . C3 ? ? ? 1_555 A HIS 43 NE2 ? ? H 0G6 1 H HIS 57 1_555 ? ? ? ? ? ? ? 1.473 ? ? covale2 covale none ? D 0G6 . C2 ? ? ? 1_555 A SER 205 OG ? ? H 0G6 1 H SER 195 1_555 ? ? ? ? ? ? ? 1.436 ? ? covale3 covale one ? A ASN 53 ND2 ? G ? 1_555 E NAG . C1 ? ? H ASN 60 H NAG 248 1_555 ? ? ? ? ? ? ? 1.449 ? N-Glycosylation covale4 covale both ? C DG 1 P ? ? ? 1_555 C DG 2 "O3'" ? ? D DG 1 D DG 2 1_555 ? ? ? ? ? ? ? 1.581 ? ? covale5 covale both ? C DG 2 P ? ? ? 1_555 C DT 3 "O3'" ? ? D DG 2 D DT 3 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale6 covale one ? C DT 3 "O5'" ? ? ? 1_555 C DT 4 P ? ? D DT 3 D DT 4 1_555 ? ? ? ? ? ? ? 1.610 ? ? metalc1 metalc ? ? A ARG 233 O ? ? ? 1_555 F NA . NA ? ? H ARG 221 H NA 601 1_555 ? ? ? ? ? ? ? 2.301 ? ? metalc2 metalc ? ? A LYS 236 O ? ? ? 1_555 F NA . NA ? ? H LYS 224 H NA 601 1_555 ? ? ? ? ? ? ? 2.658 ? ? metalc3 metalc ? ? F NA . NA ? ? ? 1_555 H HOH . O ? ? H NA 601 H HOH 1042 1_555 ? ? ? ? ? ? ? 2.547 ? ? metalc4 metalc ? ? F NA . NA ? ? ? 1_555 H HOH . O ? ? H NA 601 H HOH 1053 1_555 ? ? ? ? ? ? ? 3.055 ? ? metalc5 metalc ? ? F NA . NA ? ? ? 1_555 H HOH . O ? ? H NA 601 H HOH 1085 1_555 ? ? ? ? ? ? ? 2.248 ? ? metalc6 metalc ? ? F NA . NA ? ? ? 1_555 H HOH . O ? ? H NA 601 H HOH 1232 1_555 ? ? ? ? ? ? ? 2.328 ? ? metalc7 metalc ? ? C DG 1 O6 ? ? ? 1_555 G K . K ? ? D DG 1 D K 602 1_555 ? ? ? ? ? ? ? 2.883 ? ? metalc8 metalc ? ? C DG 2 O6 ? ? ? 1_555 G K . K ? ? D DG 2 D K 602 1_555 ? ? ? ? ? ? ? 2.723 ? ? metalc9 metalc ? ? C DG 5 O6 ? ? ? 1_555 G K . K ? ? D DG 5 D K 602 1_555 ? ? ? ? ? ? ? 2.877 ? ? metalc10 metalc ? ? C DG 6 O6 ? ? ? 1_555 G K . K ? ? D DG 6 D K 602 1_555 ? ? ? ? ? ? ? 2.868 ? ? metalc11 metalc ? ? C DG 10 O6 ? ? ? 1_555 G K . K ? ? D DG 10 D K 602 1_555 ? ? ? ? ? ? ? 2.694 ? ? metalc12 metalc ? ? C DG 11 O6 ? ? ? 1_555 G K . K ? ? D DG 11 D K 602 1_555 ? ? ? ? ? ? ? 2.906 ? ? metalc13 metalc ? ? C DG 14 O6 ? ? ? 1_555 G K . K ? ? D DG 14 D K 602 1_555 ? ? ? ? ? ? ? 2.839 ? ? metalc14 metalc ? ? C DG 15 O6 ? ? ? 1_555 G K . K ? ? D DG 15 D K 602 1_555 ? ? ? ? ? ? ? 2.813 ? ? hydrog1 hydrog ? ? C DG 1 N1 ? ? ? 1_555 C DG 6 O6 ? ? D DG 1 D DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? C DG 1 N2 ? ? ? 1_555 C DG 6 N7 ? ? D DG 1 D DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? C DG 1 N7 ? ? ? 1_555 C DG 15 N2 ? ? D DG 1 D DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? C DG 1 O6 ? ? ? 1_555 C DG 15 N1 ? ? D DG 1 D DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? C DG 2 N7 ? ? ? 1_555 C DG 5 N2 ? ? D DG 2 D DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? C DG 2 O6 ? ? ? 1_555 C DG 5 N1 ? ? D DG 2 D DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? C DG 2 N1 ? ? ? 1_555 C DG 14 O6 ? ? D DG 2 D DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? C DG 2 N2 ? ? ? 1_555 C DG 14 N7 ? ? D DG 2 D DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? C DT 4 O2 ? ? ? 1_555 C DG 5 N1 ? ? D DT 4 D DG 5 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog10 hydrog ? ? C DG 5 N7 ? ? ? 1_555 C DG 11 N2 ? ? D DG 5 D DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? C DG 5 O6 ? ? ? 1_555 C DG 11 N1 ? ? D DG 5 D DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? C DG 6 N1 ? ? ? 1_555 C DG 10 O6 ? ? D DG 6 D DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? C DG 6 N2 ? ? ? 1_555 C DG 10 N7 ? ? D DG 6 D DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? C DG 8 N2 ? ? ? 1_555 C DG 10 O6 ? ? D DG 8 D DG 10 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog15 hydrog ? ? C DG 10 N1 ? ? ? 1_555 C DG 15 O6 ? ? D DG 10 D DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? C DG 10 N2 ? ? ? 1_555 C DG 15 N7 ? ? D DG 10 D DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? C DG 11 N7 ? ? ? 1_555 C DG 14 N2 ? ? D DG 11 D DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? C DG 11 O6 ? ? ? 1_555 C DG 14 N1 ? ? D DG 11 D DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code A _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 36 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 37 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.59 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 5 ? ASP A 6 ? SER H 20 ASP H 21 A 2 GLN A 161 ? PRO A 166 ? GLN H 156 PRO H 161 A 3 LYS A 135 ? GLY A 140 ? LYS H 135 GLY H 140 A 4 PRO A 208 ? LYS A 212 ? PRO H 198 LYS H 202 A 5 TRP A 219 ? TRP A 227 ? TRP H 207 TRP H 215 A 6 GLY A 238 ? HIS A 242 ? GLY H 226 HIS H 230 A 7 MET A 185 ? ALA A 188 ? MET H 180 ALA H 183 B 1 LYS A 77 ? SER A 79 ? LYS H 81 SER H 83 B 2 LEU A 59 ? ILE A 63 ? LEU H 64 ILE H 68 B 3 GLN A 15 ? ARG A 20 ? GLN H 30 ARG H 35 B 4 GLU A 25 ? LEU A 32 ? GLU H 39 LEU H 46 B 5 TRP A 37 ? THR A 40 ? TRP H 51 THR H 54 B 6 ALA A 101 ? LEU A 105 ? ALA H 104 LEU H 108 B 7 LEU A 81 ? ILE A 86 ? LEU H 85 ILE H 90 C 1 LEU A 46 ? TYR A 47 A LEU H 60 TYR H 60 C 2 LYS A 52 F ASN A 53 G LYS H 60 ASN H 60 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 5 ? N SER H 20 O VAL A 162 ? O VAL H 157 A 2 3 O LEU A 165 ? O LEU H 160 N GLY A 136 ? N GLY H 136 A 3 4 N ARG A 137 ? N ARG H 137 O VAL A 210 ? O VAL H 200 A 4 5 N MET A 211 ? N MET H 201 O TYR A 220 ? O TYR H 208 A 5 6 N TRP A 227 ? N TRP H 215 O PHE A 239 ? O PHE H 227 A 6 7 O TYR A 240 ? O TYR H 228 N PHE A 186 ? N PHE H 181 B 1 2 O LYS A 77 ? O LYS H 81 N ILE A 63 ? N ILE H 68 B 2 3 O LEU A 60 ? O LEU H 65 N PHE A 19 ? N PHE H 34 B 3 4 N ARG A 20 ? N ARG H 35 O GLU A 25 ? O GLU H 39 B 4 5 N SER A 31 ? N SER H 45 O LEU A 39 ? O LEU H 53 B 5 6 N VAL A 38 ? N VAL H 52 O MET A 103 ? O MET H 106 B 6 7 O LYS A 104 ? O LYS H 107 N GLU A 82 ? N GLU H 86 C 1 2 N TYR A 47 A N TYR H 60 O LYS A 52 F O LYS H 60 # _database_PDB_matrix.entry_id 3QLP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3QLP _atom_sites.fract_transf_matrix[1][1] 0.014661 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009044 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008270 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 16 16 ILE ILE H . n A 1 2 VAL 2 17 17 VAL VAL H . n A 1 3 GLU 3 18 18 GLU GLU H . n A 1 4 GLY 4 19 19 GLY GLY H . n A 1 5 SER 5 20 20 SER SER H . n A 1 6 ASP 6 21 21 ASP ASP H . n A 1 7 ALA 7 22 22 ALA ALA H . n A 1 8 GLU 8 23 23 GLU GLU H . n A 1 9 ILE 9 24 24 ILE ILE H . n A 1 10 GLY 10 25 25 GLY GLY H . n A 1 11 MET 11 26 26 MET MET H . n A 1 12 SER 12 27 27 SER SER H . n A 1 13 PRO 13 28 28 PRO PRO H . n A 1 14 TRP 14 29 29 TRP TRP H . n A 1 15 GLN 15 30 30 GLN GLN H . n A 1 16 VAL 16 31 31 VAL VAL H . n A 1 17 MET 17 32 32 MET MET H . n A 1 18 LEU 18 33 33 LEU LEU H . n A 1 19 PHE 19 34 34 PHE PHE H . n A 1 20 ARG 20 35 35 ARG ARG H . n A 1 21 LYS 21 36 36 LYS LYS H . n A 1 22 SER 22 36 36 SER SER H A n A 1 23 PRO 23 37 37 PRO PRO H . n A 1 24 GLN 24 38 38 GLN GLN H . n A 1 25 GLU 25 39 39 GLU GLU H . n A 1 26 LEU 26 40 40 LEU LEU H . n A 1 27 LEU 27 41 41 LEU LEU H . n A 1 28 CYS 28 42 42 CYS CYS H . n A 1 29 GLY 29 43 43 GLY GLY H . n A 1 30 ALA 30 44 44 ALA ALA H . n A 1 31 SER 31 45 45 SER SER H . n A 1 32 LEU 32 46 46 LEU LEU H . n A 1 33 ILE 33 47 47 ILE ILE H . n A 1 34 SER 34 48 48 SER SER H . n A 1 35 ASP 35 49 49 ASP ASP H . n A 1 36 ARG 36 50 50 ARG ARG H . n A 1 37 TRP 37 51 51 TRP TRP H . n A 1 38 VAL 38 52 52 VAL VAL H . n A 1 39 LEU 39 53 53 LEU LEU H . n A 1 40 THR 40 54 54 THR THR H . n A 1 41 ALA 41 55 55 ALA ALA H . n A 1 42 ALA 42 56 56 ALA ALA H . n A 1 43 HIS 43 57 57 HIS HIS H . n A 1 44 CYS 44 58 58 CYS CYS H . n A 1 45 LEU 45 59 59 LEU LEU H . n A 1 46 LEU 46 60 60 LEU LEU H . n A 1 47 TYR 47 60 60 TYR TYR H A n A 1 48 PRO 48 60 60 PRO PRO H B n A 1 49 PRO 49 60 60 PRO PRO H C n A 1 50 TRP 50 60 60 TRP TRP H D n A 1 51 ASP 51 60 60 ASP ASP H E n A 1 52 LYS 52 60 60 LYS LYS H F n A 1 53 ASN 53 60 60 ASN ASN H G n A 1 54 PHE 54 60 60 PHE PHE H H n A 1 55 THR 55 60 60 THR THR H I n A 1 56 GLU 56 61 61 GLU GLU H . n A 1 57 ASN 57 62 62 ASN ASN H . n A 1 58 ASP 58 63 63 ASP ASP H . n A 1 59 LEU 59 64 64 LEU LEU H . n A 1 60 LEU 60 65 65 LEU LEU H . n A 1 61 VAL 61 66 66 VAL VAL H . n A 1 62 ARG 62 67 67 ARG ARG H . n A 1 63 ILE 63 68 68 ILE ILE H . n A 1 64 GLY 64 69 69 GLY GLY H . n A 1 65 LYS 65 70 70 LYS LYS H . n A 1 66 HIS 66 71 71 HIS HIS H . n A 1 67 SER 67 72 72 SER SER H . n A 1 68 ARG 68 73 73 ARG ARG H . n A 1 69 THR 69 74 74 THR THR H . n A 1 70 ARG 70 75 75 ARG ARG H . n A 1 71 TYR 71 76 76 TYR TYR H . n A 1 72 GLU 72 77 77 GLU GLU H . n A 1 73 ARG 73 77 77 ARG ARG H A n A 1 74 ASN 74 78 78 ASN ASN H . n A 1 75 ILE 75 79 79 ILE ILE H . n A 1 76 GLU 76 80 80 GLU GLU H . n A 1 77 LYS 77 81 81 LYS LYS H . n A 1 78 ILE 78 82 82 ILE ILE H . n A 1 79 SER 79 83 83 SER SER H . n A 1 80 MET 80 84 84 MET MET H . n A 1 81 LEU 81 85 85 LEU LEU H . n A 1 82 GLU 82 86 86 GLU GLU H . n A 1 83 LYS 83 87 87 LYS LYS H . n A 1 84 ILE 84 88 88 ILE ILE H . n A 1 85 TYR 85 89 89 TYR TYR H . n A 1 86 ILE 86 90 90 ILE ILE H . n A 1 87 HIS 87 91 91 HIS HIS H . n A 1 88 PRO 88 92 92 PRO PRO H . n A 1 89 ARG 89 93 93 ARG ARG H . n A 1 90 TYR 90 94 94 TYR TYR H . n A 1 91 ASN 91 95 95 ASN ASN H . n A 1 92 TRP 92 96 96 TRP TRP H . n A 1 93 ARG 93 97 97 ARG ARG H . n A 1 94 GLU 94 97 97 GLU GLU H A n A 1 95 ASN 95 98 98 ASN ASN H . n A 1 96 LEU 96 99 99 LEU LEU H . n A 1 97 ASP 97 100 100 ASP ASP H . n A 1 98 ARG 98 101 101 ARG ARG H . n A 1 99 ASP 99 102 102 ASP ASP H . n A 1 100 ILE 100 103 103 ILE ILE H . n A 1 101 ALA 101 104 104 ALA ALA H . n A 1 102 LEU 102 105 105 LEU LEU H . n A 1 103 MET 103 106 106 MET MET H . n A 1 104 LYS 104 107 107 LYS LYS H . n A 1 105 LEU 105 108 108 LEU LEU H . n A 1 106 LYS 106 109 109 LYS LYS H . n A 1 107 LYS 107 110 110 LYS LYS H . n A 1 108 PRO 108 111 111 PRO PRO H . n A 1 109 VAL 109 112 112 VAL VAL H . n A 1 110 ALA 110 113 113 ALA ALA H . n A 1 111 PHE 111 114 114 PHE PHE H . n A 1 112 SER 112 115 115 SER SER H . n A 1 113 ASP 113 116 116 ASP ASP H . n A 1 114 TYR 114 117 117 TYR TYR H . n A 1 115 ILE 115 118 118 ILE ILE H . n A 1 116 HIS 116 119 119 HIS HIS H . n A 1 117 PRO 117 120 120 PRO PRO H . n A 1 118 VAL 118 121 121 VAL VAL H . n A 1 119 CYS 119 122 122 CYS CYS H . n A 1 120 LEU 120 123 123 LEU LEU H . n A 1 121 PRO 121 124 124 PRO PRO H . n A 1 122 ASP 122 125 125 ASP ASP H . n A 1 123 ARG 123 126 126 ARG ARG H . n A 1 124 GLU 124 127 127 GLU GLU H . n A 1 125 THR 125 128 128 THR THR H . n A 1 126 ALA 126 129 129 ALA ALA H . n A 1 127 ALA 127 129 129 ALA ALA H A n A 1 128 SER 128 129 129 SER SER H B n A 1 129 LEU 129 129 129 LEU LEU H C n A 1 130 LEU 130 130 130 LEU LEU H . n A 1 131 GLN 131 131 131 GLN GLN H . n A 1 132 ALA 132 132 132 ALA ALA H . n A 1 133 GLY 133 133 133 GLY GLY H . n A 1 134 TYR 134 134 134 TYR TYR H . n A 1 135 LYS 135 135 135 LYS LYS H . n A 1 136 GLY 136 136 136 GLY GLY H . n A 1 137 ARG 137 137 137 ARG ARG H . n A 1 138 VAL 138 138 138 VAL VAL H . n A 1 139 THR 139 139 139 THR THR H . n A 1 140 GLY 140 140 140 GLY GLY H . n A 1 141 TRP 141 141 141 TRP TRP H . n A 1 142 GLY 142 142 142 GLY GLY H . n A 1 143 ASN 143 143 143 ASN ASN H . n A 1 144 LEU 144 144 144 LEU LEU H . n A 1 145 LYS 145 145 145 LYS LYS H . n A 1 146 GLU 146 146 146 GLU GLU H . n A 1 147 THR 147 147 147 THR THR H . n A 1 148 TRP 148 148 148 TRP TRP H . n A 1 149 THR 149 149 149 THR THR H . n A 1 150 ALA 150 149 149 ALA ALA H A n A 1 151 ASN 151 149 149 ASN ASN H B n A 1 152 VAL 152 149 149 VAL VAL H C n A 1 153 GLY 153 149 149 GLY GLY H D n A 1 154 LYS 154 149 149 LYS LYS H E n A 1 155 GLY 155 150 150 GLY GLY H . n A 1 156 GLN 156 151 151 GLN GLN H . n A 1 157 PRO 157 152 152 PRO PRO H . n A 1 158 SER 158 153 153 SER SER H . n A 1 159 VAL 159 154 154 VAL VAL H . n A 1 160 LEU 160 155 155 LEU LEU H . n A 1 161 GLN 161 156 156 GLN GLN H . n A 1 162 VAL 162 157 157 VAL VAL H . n A 1 163 VAL 163 158 158 VAL VAL H . n A 1 164 ASN 164 159 159 ASN ASN H . n A 1 165 LEU 165 160 160 LEU LEU H . n A 1 166 PRO 166 161 161 PRO PRO H . n A 1 167 ILE 167 162 162 ILE ILE H . n A 1 168 VAL 168 163 163 VAL VAL H . n A 1 169 GLU 169 164 164 GLU GLU H . n A 1 170 ARG 170 165 165 ARG ARG H . n A 1 171 PRO 171 166 166 PRO PRO H . n A 1 172 VAL 172 167 167 VAL VAL H . n A 1 173 CYS 173 168 168 CYS CYS H . n A 1 174 LYS 174 169 169 LYS LYS H . n A 1 175 ASP 175 170 170 ASP ASP H . n A 1 176 SER 176 171 171 SER SER H . n A 1 177 THR 177 172 172 THR THR H . n A 1 178 ARG 178 173 173 ARG ARG H . n A 1 179 ILE 179 174 174 ILE ILE H . n A 1 180 ARG 180 175 175 ARG ARG H . n A 1 181 ILE 181 176 176 ILE ILE H . n A 1 182 THR 182 177 177 THR THR H . n A 1 183 ASP 183 178 178 ASP ASP H . n A 1 184 ASN 184 179 179 ASN ASN H . n A 1 185 MET 185 180 180 MET MET H . n A 1 186 PHE 186 181 181 PHE PHE H . n A 1 187 CYS 187 182 182 CYS CYS H . n A 1 188 ALA 188 183 183 ALA ALA H . n A 1 189 GLY 189 184 184 GLY GLY H . n A 1 190 TYR 190 184 184 TYR TYR H A n A 1 191 LYS 191 185 185 LYS LYS H . n A 1 192 PRO 192 186 186 PRO PRO H . n A 1 193 ASP 193 186 186 ASP ASP H A n A 1 194 GLU 194 186 186 GLU GLU H B n A 1 195 GLY 195 186 186 GLY GLY H C n A 1 196 LYS 196 186 186 LYS LYS H D n A 1 197 ARG 197 187 187 ARG ARG H . n A 1 198 GLY 198 188 188 GLY GLY H . n A 1 199 ASP 199 189 189 ASP ASP H . n A 1 200 ALA 200 190 190 ALA ALA H . n A 1 201 CYS 201 191 191 CYS CYS H . n A 1 202 GLU 202 192 192 GLU GLU H . n A 1 203 GLY 203 193 193 GLY GLY H . n A 1 204 ASP 204 194 194 ASP ASP H . n A 1 205 SER 205 195 195 SER SER H . n A 1 206 GLY 206 196 196 GLY GLY H . n A 1 207 GLY 207 197 197 GLY GLY H . n A 1 208 PRO 208 198 198 PRO PRO H . n A 1 209 PHE 209 199 199 PHE PHE H . n A 1 210 VAL 210 200 200 VAL VAL H . n A 1 211 MET 211 201 201 MET MET H . n A 1 212 LYS 212 202 202 LYS LYS H . n A 1 213 SER 213 203 203 SER SER H . n A 1 214 PRO 214 204 204 PRO PRO H . n A 1 215 PHE 215 204 204 PHE PHE H A n A 1 216 ASN 216 204 204 ASN ASN H B n A 1 217 ASN 217 205 205 ASN ASN H . n A 1 218 ARG 218 206 206 ARG ARG H . n A 1 219 TRP 219 207 207 TRP TRP H . n A 1 220 TYR 220 208 208 TYR TYR H . n A 1 221 GLN 221 209 209 GLN GLN H . n A 1 222 MET 222 210 210 MET MET H . n A 1 223 GLY 223 211 211 GLY GLY H . n A 1 224 ILE 224 212 212 ILE ILE H . n A 1 225 VAL 225 213 213 VAL VAL H . n A 1 226 SER 226 214 214 SER SER H . n A 1 227 TRP 227 215 215 TRP TRP H . n A 1 228 GLY 228 216 216 GLY GLY H . n A 1 229 GLU 229 217 217 GLU GLU H . n A 1 230 GLY 230 219 219 GLY GLY H . n A 1 231 CYS 231 220 220 CYS CYS H . n A 1 232 ASP 232 221 221 ASP ASP H A n A 1 233 ARG 233 221 221 ARG ARG H . n A 1 234 ASP 234 222 222 ASP ASP H . n A 1 235 GLY 235 223 223 GLY GLY H . n A 1 236 LYS 236 224 224 LYS LYS H . n A 1 237 TYR 237 225 225 TYR TYR H . n A 1 238 GLY 238 226 226 GLY GLY H . n A 1 239 PHE 239 227 227 PHE PHE H . n A 1 240 TYR 240 228 228 TYR TYR H . n A 1 241 THR 241 229 229 THR THR H . n A 1 242 HIS 242 230 230 HIS HIS H . n A 1 243 VAL 243 231 231 VAL VAL H . n A 1 244 PHE 244 232 232 PHE PHE H . n A 1 245 ARG 245 233 233 ARG ARG H . n A 1 246 LEU 246 234 234 LEU LEU H . n A 1 247 LYS 247 235 235 LYS LYS H . n A 1 248 LYS 248 236 236 LYS LYS H . n A 1 249 TRP 249 237 237 TRP TRP H . n A 1 250 ILE 250 238 238 ILE ILE H . n A 1 251 GLN 251 239 239 GLN GLN H . n A 1 252 LYS 252 240 240 LYS LYS H . n A 1 253 VAL 253 241 241 VAL VAL H . n A 1 254 ILE 254 242 242 ILE ILE H . n A 1 255 ASP 255 243 243 ASP ASP H . n A 1 256 GLN 256 244 244 GLN GLN H . n A 1 257 PHE 257 245 245 PHE PHE H . n A 1 258 GLY 258 246 246 GLY GLY H . n A 1 259 GLU 259 247 247 GLU GLU H . n B 2 1 THR 1 1 1 THR THR L H n B 2 2 PHE 2 1 1 PHE PHE L G n B 2 3 GLY 3 1 1 GLY GLY L F n B 2 4 SER 4 1 1 SER SER L E n B 2 5 GLY 5 1 1 GLY GLY L D n B 2 6 GLU 6 1 1 GLU GLU L C n B 2 7 ALA 7 1 1 ALA ALA L B n B 2 8 ASP 8 1 1 ASP ASP L A n B 2 9 CYS 9 1 1 CYS CYS L . n B 2 10 GLY 10 2 2 GLY GLY L . n B 2 11 LEU 11 3 3 LEU LEU L . n B 2 12 ARG 12 4 4 ARG ARG L . n B 2 13 PRO 13 5 5 PRO PRO L . n B 2 14 LEU 14 6 6 LEU LEU L . n B 2 15 PHE 15 7 7 PHE PHE L . n B 2 16 GLU 16 8 8 GLU GLU L . n B 2 17 LYS 17 9 9 LYS LYS L . n B 2 18 LYS 18 10 10 LYS LYS L . n B 2 19 SER 19 11 11 SER SER L . n B 2 20 LEU 20 12 12 LEU LEU L . n B 2 21 GLU 21 13 13 GLU GLU L . n B 2 22 ASP 22 14 14 ASP ASP L . n B 2 23 LYS 23 14 14 LYS LYS L A n B 2 24 THR 24 14 14 THR THR L B n B 2 25 GLU 25 14 14 GLU GLU L C n B 2 26 ARG 26 14 14 ARG ARG L D n B 2 27 GLU 27 14 14 GLU GLU L E n B 2 28 LEU 28 14 14 LEU LEU L F n B 2 29 LEU 29 14 14 LEU LEU L G n B 2 30 GLU 30 14 14 GLU GLU L H n B 2 31 SER 31 14 14 SER SER L I n B 2 32 TYR 32 14 14 TYR TYR L J n B 2 33 ILE 33 14 14 ILE ILE L K n B 2 34 ASP 34 14 14 ASP ASP L L n B 2 35 GLY 35 15 ? ? ? L . n B 2 36 ARG 36 16 ? ? ? L . n C 3 1 DG 1 1 1 DG DG D . n C 3 2 DG 2 2 2 DG DG D . n C 3 3 DT 3 3 3 DT DT D . n C 3 4 DT 4 4 4 DT DT D . n C 3 5 DG 5 5 5 DG DG D . n C 3 6 DG 6 6 6 DG DG D . n C 3 7 DT 7 7 7 DT DT D . n C 3 8 DG 8 8 8 DG DG D . n C 3 9 DT 9 9 9 DT DT D . n C 3 10 DG 10 10 10 DG DG D . n C 3 11 DG 11 11 11 DG DG D . n C 3 12 DT 12 12 12 DT DT D . n C 3 13 DT 13 13 13 DT DT D . n C 3 14 DG 14 14 14 DG DG D . n C 3 15 DG 15 15 15 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 0G6 1 1 1 0G6 0G6 H . E 5 NAG 1 248 1 NAG NAG H . F 6 NA 1 601 601 NA NA H . G 7 K 1 602 602 K K D . H 8 HOH 1 1018 1018 HOH HOH H . H 8 HOH 2 1019 1019 HOH HOH H . H 8 HOH 3 1020 1020 HOH HOH H . H 8 HOH 4 1021 1021 HOH HOH H . H 8 HOH 5 1023 1023 HOH HOH H . H 8 HOH 6 1024 1024 HOH HOH H . H 8 HOH 7 1025 1025 HOH HOH H . H 8 HOH 8 1026 1026 HOH HOH H . H 8 HOH 9 1027 1027 HOH HOH H . H 8 HOH 10 1028 1028 HOH HOH H . H 8 HOH 11 1029 1029 HOH HOH H . H 8 HOH 12 1031 1031 HOH HOH H . H 8 HOH 13 1032 1032 HOH HOH H . H 8 HOH 14 1034 1034 HOH HOH H . H 8 HOH 15 1038 1038 HOH HOH H . H 8 HOH 16 1039 1039 HOH HOH H . H 8 HOH 17 1040 1040 HOH HOH H . H 8 HOH 18 1042 1042 HOH HOH H . H 8 HOH 19 1043 1043 HOH HOH H . H 8 HOH 20 1044 1044 HOH HOH H . H 8 HOH 21 1045 1045 HOH HOH H . H 8 HOH 22 1046 1046 HOH HOH H . H 8 HOH 23 1047 1047 HOH HOH H . H 8 HOH 24 1048 1048 HOH HOH H . H 8 HOH 25 1049 1049 HOH HOH H . H 8 HOH 26 1050 1050 HOH HOH H . H 8 HOH 27 1053 1053 HOH HOH H . H 8 HOH 28 1054 1054 HOH HOH H . H 8 HOH 29 1055 1055 HOH HOH H . H 8 HOH 30 1056 1056 HOH HOH H . H 8 HOH 31 1057 1057 HOH HOH H . H 8 HOH 32 1061 1061 HOH HOH H . H 8 HOH 33 1063 1063 HOH HOH H . H 8 HOH 34 1064 1064 HOH HOH H . H 8 HOH 35 1066 1066 HOH HOH H . H 8 HOH 36 1068 1068 HOH HOH H . H 8 HOH 37 1069 1069 HOH HOH H . H 8 HOH 38 1070 1070 HOH HOH H . H 8 HOH 39 1071 1071 HOH HOH H . H 8 HOH 40 1073 1073 HOH HOH H . H 8 HOH 41 1075 1075 HOH HOH H . H 8 HOH 42 1076 1076 HOH HOH H . H 8 HOH 43 1077 1077 HOH HOH H . H 8 HOH 44 1078 1078 HOH HOH H . H 8 HOH 45 1079 1079 HOH HOH H . H 8 HOH 46 1080 1080 HOH HOH H . H 8 HOH 47 1081 1081 HOH HOH H . H 8 HOH 48 1082 1082 HOH HOH H . H 8 HOH 49 1083 1083 HOH HOH H . H 8 HOH 50 1084 1084 HOH HOH H . H 8 HOH 51 1085 1085 HOH HOH H . H 8 HOH 52 1086 1086 HOH HOH H . H 8 HOH 53 1089 1089 HOH HOH H . H 8 HOH 54 1090 1090 HOH HOH H . H 8 HOH 55 1092 1092 HOH HOH H . H 8 HOH 56 1094 1094 HOH HOH H . H 8 HOH 57 1095 1095 HOH HOH H . H 8 HOH 58 1096 1096 HOH HOH H . H 8 HOH 59 1097 1097 HOH HOH H . H 8 HOH 60 1098 1098 HOH HOH H . H 8 HOH 61 1099 1099 HOH HOH H . H 8 HOH 62 1101 1101 HOH HOH H . H 8 HOH 63 1102 1102 HOH HOH H . H 8 HOH 64 1103 1103 HOH HOH H . H 8 HOH 65 1104 1104 HOH HOH H . H 8 HOH 66 1105 1105 HOH HOH H . H 8 HOH 67 1106 1106 HOH HOH H . H 8 HOH 68 1107 1107 HOH HOH H . H 8 HOH 69 1108 1108 HOH HOH H . H 8 HOH 70 1109 1109 HOH HOH H . H 8 HOH 71 1110 1110 HOH HOH H . H 8 HOH 72 1111 1111 HOH HOH H . H 8 HOH 73 1112 1112 HOH HOH H . H 8 HOH 74 1113 1113 HOH HOH H . H 8 HOH 75 1114 1114 HOH HOH H . H 8 HOH 76 1115 1115 HOH HOH H . H 8 HOH 77 1116 1116 HOH HOH H . H 8 HOH 78 1117 1117 HOH HOH H . H 8 HOH 79 1118 1118 HOH HOH H . H 8 HOH 80 1119 1119 HOH HOH H . H 8 HOH 81 1120 1120 HOH HOH H . H 8 HOH 82 1121 1121 HOH HOH H . H 8 HOH 83 1122 1122 HOH HOH H . H 8 HOH 84 1123 1123 HOH HOH H . H 8 HOH 85 1124 1124 HOH HOH H . H 8 HOH 86 1125 1125 HOH HOH H . H 8 HOH 87 1127 1127 HOH HOH H . H 8 HOH 88 1128 1128 HOH HOH H . H 8 HOH 89 1129 1129 HOH HOH H . H 8 HOH 90 1130 1130 HOH HOH H . H 8 HOH 91 1131 1131 HOH HOH H . H 8 HOH 92 1133 1133 HOH HOH H . H 8 HOH 93 1134 1134 HOH HOH H . H 8 HOH 94 1137 1137 HOH HOH H . H 8 HOH 95 1138 1138 HOH HOH H . H 8 HOH 96 1140 1140 HOH HOH H . H 8 HOH 97 1141 1141 HOH HOH H . H 8 HOH 98 1142 1142 HOH HOH H . H 8 HOH 99 1143 1143 HOH HOH H . H 8 HOH 100 1146 1146 HOH HOH H . H 8 HOH 101 1147 1147 HOH HOH H . H 8 HOH 102 1148 1148 HOH HOH H . H 8 HOH 103 1149 1149 HOH HOH H . H 8 HOH 104 1150 1150 HOH HOH H . H 8 HOH 105 1151 1151 HOH HOH H . H 8 HOH 106 1152 1152 HOH HOH H . H 8 HOH 107 1153 1153 HOH HOH H . H 8 HOH 108 1154 1154 HOH HOH H . H 8 HOH 109 1156 1156 HOH HOH H . H 8 HOH 110 1157 1157 HOH HOH H . H 8 HOH 111 1158 1158 HOH HOH H . H 8 HOH 112 1161 1161 HOH HOH H . H 8 HOH 113 1162 1162 HOH HOH H . H 8 HOH 114 1163 1163 HOH HOH H . H 8 HOH 115 1164 1164 HOH HOH H . H 8 HOH 116 1166 1166 HOH HOH H . H 8 HOH 117 1170 1170 HOH HOH H . H 8 HOH 118 1171 1171 HOH HOH H . H 8 HOH 119 1173 1173 HOH HOH H . H 8 HOH 120 1176 1176 HOH HOH H . H 8 HOH 121 1178 1178 HOH HOH H . H 8 HOH 122 1181 1181 HOH HOH H . H 8 HOH 123 1182 1182 HOH HOH H . H 8 HOH 124 1183 1183 HOH HOH H . H 8 HOH 125 1184 1184 HOH HOH H . H 8 HOH 126 1185 1185 HOH HOH H . H 8 HOH 127 1187 1187 HOH HOH H . H 8 HOH 128 1189 1189 HOH HOH H . H 8 HOH 129 1192 1192 HOH HOH H . H 8 HOH 130 1193 1193 HOH HOH H . H 8 HOH 131 1194 1194 HOH HOH H . H 8 HOH 132 1195 1195 HOH HOH H . H 8 HOH 133 1196 1196 HOH HOH H . H 8 HOH 134 1198 1198 HOH HOH H . H 8 HOH 135 1199 1199 HOH HOH H . H 8 HOH 136 1201 1201 HOH HOH H . H 8 HOH 137 1202 1202 HOH HOH H . H 8 HOH 138 1204 1204 HOH HOH H . H 8 HOH 139 1205 1205 HOH HOH H . H 8 HOH 140 1207 1207 HOH HOH H . H 8 HOH 141 1208 1208 HOH HOH H . H 8 HOH 142 1209 1209 HOH HOH H . H 8 HOH 143 1211 1211 HOH HOH H . H 8 HOH 144 1213 1213 HOH HOH H . H 8 HOH 145 1214 1214 HOH HOH H . H 8 HOH 146 1215 1215 HOH HOH H . H 8 HOH 147 1216 1216 HOH HOH H . H 8 HOH 148 1218 1218 HOH HOH H . H 8 HOH 149 1219 1219 HOH HOH H . H 8 HOH 150 1221 1221 HOH HOH H . H 8 HOH 151 1222 1222 HOH HOH H . H 8 HOH 152 1224 1224 HOH HOH H . H 8 HOH 153 1227 1227 HOH HOH H . H 8 HOH 154 1228 1228 HOH HOH H . H 8 HOH 155 1229 1229 HOH HOH H . H 8 HOH 156 1230 1230 HOH HOH H . H 8 HOH 157 1232 1232 HOH HOH H . H 8 HOH 158 1233 1233 HOH HOH H . H 8 HOH 159 1234 1234 HOH HOH H . H 8 HOH 160 1235 1235 HOH HOH H . H 8 HOH 161 1236 1236 HOH HOH H . H 8 HOH 162 1237 1237 HOH HOH H . H 8 HOH 163 1238 1238 HOH HOH H . H 8 HOH 164 1240 1240 HOH HOH H . H 8 HOH 165 1241 1241 HOH HOH H . H 8 HOH 166 1242 1242 HOH HOH H . H 8 HOH 167 1243 1243 HOH HOH H . H 8 HOH 168 1244 1244 HOH HOH H . H 8 HOH 169 1245 1245 HOH HOH H . H 8 HOH 170 1247 1247 HOH HOH H . H 8 HOH 171 1248 1248 HOH HOH H . H 8 HOH 172 1249 1249 HOH HOH H . H 8 HOH 173 1251 1251 HOH HOH H . H 8 HOH 174 1252 1252 HOH HOH H . H 8 HOH 175 1253 1253 HOH HOH H . H 8 HOH 176 1254 1254 HOH HOH H . H 8 HOH 177 1255 1255 HOH HOH H . H 8 HOH 178 1256 1256 HOH HOH H . H 8 HOH 179 1258 1258 HOH HOH H . H 8 HOH 180 1259 1259 HOH HOH H . I 8 HOH 1 1033 1033 HOH HOH L . I 8 HOH 2 1035 1035 HOH HOH L . I 8 HOH 3 1051 1051 HOH HOH L . I 8 HOH 4 1060 1060 HOH HOH L . I 8 HOH 5 1087 1087 HOH HOH L . I 8 HOH 6 1091 1091 HOH HOH L . I 8 HOH 7 1144 1144 HOH HOH L . I 8 HOH 8 1155 1155 HOH HOH L . I 8 HOH 9 1159 1159 HOH HOH L . I 8 HOH 10 1160 1160 HOH HOH L . I 8 HOH 11 1167 1167 HOH HOH L . I 8 HOH 12 1169 1169 HOH HOH L . I 8 HOH 13 1172 1172 HOH HOH L . I 8 HOH 14 1175 1175 HOH HOH L . I 8 HOH 15 1186 1186 HOH HOH L . I 8 HOH 16 1190 1190 HOH HOH L . I 8 HOH 17 1191 1191 HOH HOH L . I 8 HOH 18 1197 1197 HOH HOH L . I 8 HOH 19 1200 1200 HOH HOH L . I 8 HOH 20 1206 1206 HOH HOH L . I 8 HOH 21 1217 1217 HOH HOH L . I 8 HOH 22 1225 1225 HOH HOH L . I 8 HOH 23 1226 1226 HOH HOH L . I 8 HOH 24 1239 1239 HOH HOH L . I 8 HOH 25 1260 1260 HOH HOH L . I 8 HOH 26 1262 1262 HOH HOH L . J 8 HOH 1 1022 1022 HOH HOH D . J 8 HOH 2 1030 1030 HOH HOH D . J 8 HOH 3 1036 1036 HOH HOH D . J 8 HOH 4 1037 1037 HOH HOH D . J 8 HOH 5 1041 1041 HOH HOH D . J 8 HOH 6 1052 1052 HOH HOH D . J 8 HOH 7 1058 1058 HOH HOH D . J 8 HOH 8 1059 1059 HOH HOH D . J 8 HOH 9 1062 1062 HOH HOH D . J 8 HOH 10 1065 1065 HOH HOH D . J 8 HOH 11 1067 1067 HOH HOH D . J 8 HOH 12 1072 1072 HOH HOH D . J 8 HOH 13 1074 1074 HOH HOH D . J 8 HOH 14 1088 1088 HOH HOH D . J 8 HOH 15 1093 1093 HOH HOH D . J 8 HOH 16 1100 1100 HOH HOH D . J 8 HOH 17 1126 1126 HOH HOH D . J 8 HOH 18 1132 1132 HOH HOH D . J 8 HOH 19 1135 1135 HOH HOH D . J 8 HOH 20 1136 1136 HOH HOH D . J 8 HOH 21 1139 1139 HOH HOH D . J 8 HOH 22 1145 1145 HOH HOH D . J 8 HOH 23 1165 1165 HOH HOH D . J 8 HOH 24 1168 1168 HOH HOH D . J 8 HOH 25 1174 1174 HOH HOH D . J 8 HOH 26 1177 1177 HOH HOH D . J 8 HOH 27 1179 1179 HOH HOH D . J 8 HOH 28 1180 1180 HOH HOH D . J 8 HOH 29 1188 1188 HOH HOH D . J 8 HOH 30 1203 1203 HOH HOH D . J 8 HOH 31 1210 1210 HOH HOH D . J 8 HOH 32 1212 1212 HOH HOH D . J 8 HOH 33 1220 1220 HOH HOH D . J 8 HOH 34 1223 1223 HOH HOH D . J 8 HOH 35 1231 1231 HOH HOH D . J 8 HOH 36 1246 1246 HOH HOH D . J 8 HOH 37 1250 1250 HOH HOH D . J 8 HOH 38 1257 1257 HOH HOH D . J 8 HOH 39 1261 1261 HOH HOH D . J 8 HOH 40 1264 1264 HOH HOH D . J 8 HOH 41 1265 1265 HOH HOH D . J 8 HOH 42 1266 1266 HOH HOH D . J 8 HOH 43 1267 1267 HOH HOH D . J 8 HOH 44 1268 1268 HOH HOH D . J 8 HOH 45 1269 1269 HOH HOH D . # _pdbx_molecule_features.prd_id PRD_000020 _pdbx_molecule_features.name D-Phe-Pro-Arg-CH2Cl _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000020 _pdbx_molecule.asym_id D # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 53 _pdbx_struct_mod_residue.auth_asym_id H _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 60 _pdbx_struct_mod_residue.PDB_ins_code G _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4120 ? 1 MORE -15 ? 1 'SSA (A^2)' 14920 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ARG 233 ? H ARG 221 ? 1_555 NA ? F NA . ? H NA 601 ? 1_555 O ? A LYS 236 ? H LYS 224 ? 1_555 86.7 ? 2 O ? A ARG 233 ? H ARG 221 ? 1_555 NA ? F NA . ? H NA 601 ? 1_555 O ? H HOH . ? H HOH 1042 ? 1_555 147.1 ? 3 O ? A LYS 236 ? H LYS 224 ? 1_555 NA ? F NA . ? H NA 601 ? 1_555 O ? H HOH . ? H HOH 1042 ? 1_555 63.1 ? 4 O ? A ARG 233 ? H ARG 221 ? 1_555 NA ? F NA . ? H NA 601 ? 1_555 O ? H HOH . ? H HOH 1053 ? 1_555 88.6 ? 5 O ? A LYS 236 ? H LYS 224 ? 1_555 NA ? F NA . ? H NA 601 ? 1_555 O ? H HOH . ? H HOH 1053 ? 1_555 85.1 ? 6 O ? H HOH . ? H HOH 1042 ? 1_555 NA ? F NA . ? H NA 601 ? 1_555 O ? H HOH . ? H HOH 1053 ? 1_555 76.8 ? 7 O ? A ARG 233 ? H ARG 221 ? 1_555 NA ? F NA . ? H NA 601 ? 1_555 O ? H HOH . ? H HOH 1085 ? 1_555 121.2 ? 8 O ? A LYS 236 ? H LYS 224 ? 1_555 NA ? F NA . ? H NA 601 ? 1_555 O ? H HOH . ? H HOH 1085 ? 1_555 149.4 ? 9 O ? H HOH . ? H HOH 1042 ? 1_555 NA ? F NA . ? H NA 601 ? 1_555 O ? H HOH . ? H HOH 1085 ? 1_555 86.7 ? 10 O ? H HOH . ? H HOH 1053 ? 1_555 NA ? F NA . ? H NA 601 ? 1_555 O ? H HOH . ? H HOH 1085 ? 1_555 83.3 ? 11 O ? A ARG 233 ? H ARG 221 ? 1_555 NA ? F NA . ? H NA 601 ? 1_555 O ? H HOH . ? H HOH 1232 ? 1_555 102.0 ? 12 O ? A LYS 236 ? H LYS 224 ? 1_555 NA ? F NA . ? H NA 601 ? 1_555 O ? H HOH . ? H HOH 1232 ? 1_555 79.9 ? 13 O ? H HOH . ? H HOH 1042 ? 1_555 NA ? F NA . ? H NA 601 ? 1_555 O ? H HOH . ? H HOH 1232 ? 1_555 86.0 ? 14 O ? H HOH . ? H HOH 1053 ? 1_555 NA ? F NA . ? H NA 601 ? 1_555 O ? H HOH . ? H HOH 1232 ? 1_555 161.0 ? 15 O ? H HOH . ? H HOH 1085 ? 1_555 NA ? F NA . ? H NA 601 ? 1_555 O ? H HOH . ? H HOH 1232 ? 1_555 103.9 ? 16 O6 ? C DG 1 ? D DG 1 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 2 ? D DG 2 ? 1_555 70.9 ? 17 O6 ? C DG 1 ? D DG 1 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 5 ? D DG 5 ? 1_555 120.0 ? 18 O6 ? C DG 2 ? D DG 2 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 5 ? D DG 5 ? 1_555 69.2 ? 19 O6 ? C DG 1 ? D DG 1 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 6 ? D DG 6 ? 1_555 69.4 ? 20 O6 ? C DG 2 ? D DG 2 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 6 ? D DG 6 ? 1_555 91.0 ? 21 O6 ? C DG 5 ? D DG 5 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 6 ? D DG 6 ? 1_555 68.6 ? 22 O6 ? C DG 1 ? D DG 1 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 10 ? D DG 10 ? 1_555 112.5 ? 23 O6 ? C DG 2 ? D DG 2 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 10 ? D DG 10 ? 1_555 165.7 ? 24 O6 ? C DG 5 ? D DG 5 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 10 ? D DG 10 ? 1_555 98.1 ? 25 O6 ? C DG 6 ? D DG 6 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 10 ? D DG 10 ? 1_555 77.8 ? 26 O6 ? C DG 1 ? D DG 1 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 11 ? D DG 11 ? 1_555 166.6 ? 27 O6 ? C DG 2 ? D DG 2 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 11 ? D DG 11 ? 1_555 114.2 ? 28 O6 ? C DG 5 ? D DG 5 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 11 ? D DG 11 ? 1_555 73.0 ? 29 O6 ? C DG 6 ? D DG 6 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 11 ? D DG 11 ? 1_555 121.6 ? 30 O6 ? C DG 10 ? D DG 10 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 11 ? D DG 11 ? 1_555 65.9 ? 31 O6 ? C DG 1 ? D DG 1 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 14 ? D DG 14 ? 1_555 103.8 ? 32 O6 ? C DG 2 ? D DG 2 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 14 ? D DG 14 ? 1_555 69.6 ? 33 O6 ? C DG 5 ? D DG 5 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 14 ? D DG 14 ? 1_555 102.0 ? 34 O6 ? C DG 6 ? D DG 6 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 14 ? D DG 14 ? 1_555 160.6 ? 35 O6 ? C DG 10 ? D DG 10 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 14 ? D DG 14 ? 1_555 121.1 ? 36 O6 ? C DG 11 ? D DG 11 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 14 ? D DG 14 ? 1_555 68.3 ? 37 O6 ? C DG 1 ? D DG 1 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 15 ? D DG 15 ? 1_555 70.6 ? 38 O6 ? C DG 2 ? D DG 2 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 15 ? D DG 15 ? 1_555 118.2 ? 39 O6 ? C DG 5 ? D DG 5 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 15 ? D DG 15 ? 1_555 169.3 ? 40 O6 ? C DG 6 ? D DG 6 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 15 ? D DG 15 ? 1_555 117.2 ? 41 O6 ? C DG 10 ? D DG 10 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 15 ? D DG 15 ? 1_555 75.4 ? 42 O6 ? C DG 11 ? D DG 11 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 15 ? D DG 15 ? 1_555 96.5 ? 43 O6 ? C DG 14 ? D DG 14 ? 1_555 K ? G K . ? D K 602 ? 1_555 O6 ? C DG 15 ? D DG 15 ? 1_555 75.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-10-19 2 'Structure model' 1 1 2013-02-27 3 'Structure model' 1 2 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' Advisory 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' entity 3 3 'Structure model' pdbx_chem_comp_identifier 4 3 'Structure model' pdbx_entity_nonpoly 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 7 3 'Structure model' pdbx_validate_polymer_linkage 8 3 'Structure model' struct_conn 9 3 'Structure model' struct_site 10 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.name' 2 3 'Structure model' '_chem_comp.type' 3 3 'Structure model' '_entity.pdbx_description' 4 3 'Structure model' '_pdbx_entity_nonpoly.name' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.value' 16 3 'Structure model' '_struct_conn.pdbx_dist_value' 17 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 3 'Structure model' '_struct_conn.pdbx_ptnr1_PDB_ins_code' 19 3 'Structure model' '_struct_conn.pdbx_role' 20 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 AMoRE phasing . ? 2 CNS refinement 1.1 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 3QLP _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;BECAUSE OF THE PRESENCE OF THE POLARITY INVERSION SITE IN MTBA, SOME RESIDUE HAVE UNUSUAL LINKAGES. IN PARTICULAR RESIDUE D DG 2 IS LINKED TO THE P ATOM OF RESIDUE D DG 1 BY ITS O3' ATOM, AND RESIDUE D DT 3 IS LINKED TO RESIDUE D DT 4 BY ITS O5' ATOM. THE PHOSPHATE GROUP OF RESIDUE D DT 3 IS MISSING DUE TO THE 5'-3' INVERSION OF THIS STRAND. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG H SER 195 ? ? O2 H 0G6 1 ? ? 2.09 2 1 O H GLU 247 ? ? O H HOH 1148 ? ? 2.16 3 1 O H HOH 1156 ? ? O H HOH 1173 ? ? 2.17 4 1 O H GLU 247 ? ? O H HOH 1183 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 110.12 108.30 1.82 0.30 N 2 1 "C5'" D DG 5 ? ? "C4'" D DG 5 ? ? "C3'" D DG 5 ? ? 123.19 115.70 7.49 1.20 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER H 48 ? ? -160.50 -167.88 2 1 ASN H 60 G ? -155.89 84.70 3 1 HIS H 71 ? ? -130.52 -57.06 4 1 ILE H 79 ? ? -122.24 -56.34 5 1 ASN H 98 ? ? -158.49 21.55 6 1 SER H 115 ? ? -160.95 -166.45 7 1 ASN H 204 B ? -145.71 16.39 8 1 ASN H 205 ? ? 31.95 42.43 9 1 PHE L 7 ? ? -128.59 -91.72 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG D 1 ? ? 0.060 'SIDE CHAIN' 2 1 DT D 12 ? ? 0.061 'SIDE CHAIN' 3 1 DT D 13 ? ? 0.072 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 D DT 7 ? N1 ? C DT 7 N1 2 1 Y 1 D DT 7 ? C2 ? C DT 7 C2 3 1 Y 1 D DT 7 ? O2 ? C DT 7 O2 4 1 Y 1 D DT 7 ? N3 ? C DT 7 N3 5 1 Y 1 D DT 7 ? C4 ? C DT 7 C4 6 1 Y 1 D DT 7 ? O4 ? C DT 7 O4 7 1 Y 1 D DT 7 ? C5 ? C DT 7 C5 8 1 Y 1 D DT 7 ? C7 ? C DT 7 C7 9 1 Y 1 D DT 7 ? C6 ? C DT 7 C6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 L GLY 15 ? B GLY 35 2 1 Y 1 L ARG 16 ? B ARG 36 # _ndb_struct_conf_na.entry_id 3QLP _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DG 1 1_555 C DG 15 1_555 -1.713 -3.373 0.262 -3.254 11.069 88.529 1 D_DG1:DG15_D D 1 ? D 15 ? 6 3 1 C DG 6 1_555 C DG 10 1_555 1.939 3.301 -0.657 21.319 -7.444 -85.218 2 D_DG6:DG10_D D 6 ? D 10 ? 6 3 1 C DG 14 1_555 C DG 11 1_555 1.683 3.116 0.001 1.438 -16.173 -93.283 3 D_DG14:DG11_D D 14 ? D 11 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DG 1 1_555 C DG 15 1_555 C DG 6 1_555 C DG 10 1_555 -1.769 -3.294 -0.112 4.948 -1.412 179.359 -1.647 0.885 -0.112 -0.706 -2.474 179.360 1 DD_DG1DG6:DG10DG15_DD D 1 ? D 15 ? D 6 ? D 10 ? 1 C DG 6 1_555 C DG 10 1_555 C DG 14 1_555 C DG 11 1_555 -1.463 -2.652 0.589 170.315 -52.067 48.889 -1.301 0.813 -0.324 -26.196 -85.691 178.267 2 DD_DG6DG14:DG11DG10_DD D 6 ? D 10 ? D 14 ? D 11 ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' 0G6 5 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 6 'SODIUM ION' NA 7 'POTASSIUM ION' K 8 water HOH #