data_3QP4 # _entry.id 3QP4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3QP4 pdb_00003qp4 10.2210/pdb3qp4/pdb RCSB RCSB063925 ? ? WWPDB D_1000063925 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3QP1 'Crystal structure of CviR ligand-binding domain bound to C6-HSL' unspecified PDB 3QP2 'Crystal structure of CviR ligand-binding domain bound to C8-HSL' unspecified PDB 3QP5 'Crystal structure of CviR bound to antagonist chlorolactone (CL)' unspecified PDB 3QP6 'Crystal structure of CviR (Chromobacterium violaceum 12472) bound to C6-HSL' unspecified PDB 3QP7 'Crystal structure of SeMet CviR (Chromobacterium violaceum 12472) bound to C6-HSL' unspecified PDB 3QP8 'Crystal structure of CviR (Chromobacterium violaceum 12472) bound to C10-HSL' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3QP4 _pdbx_database_status.recvd_initial_deposition_date 2011-02-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chen, G.' 1 'Swem, L.' 2 'Swem, D.' 3 'Stauff, D.' 4 ;O'Loughlin, C. ; 5 'Jeffrey, P.' 6 'Bassler, B.' 7 'Hughson, F.' 8 # _citation.id primary _citation.title 'A strategy for antagonizing quorum sensing.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 42 _citation.page_first 199 _citation.page_last 209 _citation.year 2011 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21504831 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2011.04.003 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, G.' 1 ? primary 'Swem, L.R.' 2 ? primary 'Swem, D.L.' 3 ? primary 'Stauff, D.L.' 4 ? primary ;O'Loughlin, C.T. ; 5 ? primary 'Jeffrey, P.D.' 6 ? primary 'Bassler, B.L.' 7 ? primary 'Hughson, F.M.' 8 ? # _cell.entry_id 3QP4 _cell.length_a 55.196 _cell.length_b 56.216 _cell.length_c 124.944 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3QP4 _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CviR transcriptional regulator' 20381.113 1 ? ? 'ligand binding domain (UNP residues 10-187)' ? 2 non-polymer syn 'N-[(3S)-2-oxotetrahydrofuran-3-yl]decanamide' 255.353 1 ? ? ? ? 3 water nat water 18.015 138 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Transcriptional activator, LuxR/UhpA family of regulators' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMRPLPAGLTASQQWTLLEWIHMAGHIETENELKAFLDQVLSQAPSERLLLALGRLNNQNQIQRLERVLNVSYPSDWL DQYMKENYAQHDPILRIHLGQGPVMWEERFNRAKGAEEKRFIAEATQNGMGSGITFSAASERNNIGSILSIAGREPGRNA ALVAMLNCLTPHLHQAAIRVAN ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMRPLPAGLTASQQWTLLEWIHMAGHIETENELKAFLDQVLSQAPSERLLLALGRLNNQNQIQRLERVLNVSYPSDWL DQYMKENYAQHDPILRIHLGQGPVMWEERFNRAKGAEEKRFIAEATQNGMGSGITFSAASERNNIGSILSIAGREPGRNA ALVAMLNCLTPHLHQAAIRVAN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ARG n 1 6 PRO n 1 7 LEU n 1 8 PRO n 1 9 ALA n 1 10 GLY n 1 11 LEU n 1 12 THR n 1 13 ALA n 1 14 SER n 1 15 GLN n 1 16 GLN n 1 17 TRP n 1 18 THR n 1 19 LEU n 1 20 LEU n 1 21 GLU n 1 22 TRP n 1 23 ILE n 1 24 HIS n 1 25 MET n 1 26 ALA n 1 27 GLY n 1 28 HIS n 1 29 ILE n 1 30 GLU n 1 31 THR n 1 32 GLU n 1 33 ASN n 1 34 GLU n 1 35 LEU n 1 36 LYS n 1 37 ALA n 1 38 PHE n 1 39 LEU n 1 40 ASP n 1 41 GLN n 1 42 VAL n 1 43 LEU n 1 44 SER n 1 45 GLN n 1 46 ALA n 1 47 PRO n 1 48 SER n 1 49 GLU n 1 50 ARG n 1 51 LEU n 1 52 LEU n 1 53 LEU n 1 54 ALA n 1 55 LEU n 1 56 GLY n 1 57 ARG n 1 58 LEU n 1 59 ASN n 1 60 ASN n 1 61 GLN n 1 62 ASN n 1 63 GLN n 1 64 ILE n 1 65 GLN n 1 66 ARG n 1 67 LEU n 1 68 GLU n 1 69 ARG n 1 70 VAL n 1 71 LEU n 1 72 ASN n 1 73 VAL n 1 74 SER n 1 75 TYR n 1 76 PRO n 1 77 SER n 1 78 ASP n 1 79 TRP n 1 80 LEU n 1 81 ASP n 1 82 GLN n 1 83 TYR n 1 84 MET n 1 85 LYS n 1 86 GLU n 1 87 ASN n 1 88 TYR n 1 89 ALA n 1 90 GLN n 1 91 HIS n 1 92 ASP n 1 93 PRO n 1 94 ILE n 1 95 LEU n 1 96 ARG n 1 97 ILE n 1 98 HIS n 1 99 LEU n 1 100 GLY n 1 101 GLN n 1 102 GLY n 1 103 PRO n 1 104 VAL n 1 105 MET n 1 106 TRP n 1 107 GLU n 1 108 GLU n 1 109 ARG n 1 110 PHE n 1 111 ASN n 1 112 ARG n 1 113 ALA n 1 114 LYS n 1 115 GLY n 1 116 ALA n 1 117 GLU n 1 118 GLU n 1 119 LYS n 1 120 ARG n 1 121 PHE n 1 122 ILE n 1 123 ALA n 1 124 GLU n 1 125 ALA n 1 126 THR n 1 127 GLN n 1 128 ASN n 1 129 GLY n 1 130 MET n 1 131 GLY n 1 132 SER n 1 133 GLY n 1 134 ILE n 1 135 THR n 1 136 PHE n 1 137 SER n 1 138 ALA n 1 139 ALA n 1 140 SER n 1 141 GLU n 1 142 ARG n 1 143 ASN n 1 144 ASN n 1 145 ILE n 1 146 GLY n 1 147 SER n 1 148 ILE n 1 149 LEU n 1 150 SER n 1 151 ILE n 1 152 ALA n 1 153 GLY n 1 154 ARG n 1 155 GLU n 1 156 PRO n 1 157 GLY n 1 158 ARG n 1 159 ASN n 1 160 ALA n 1 161 ALA n 1 162 LEU n 1 163 VAL n 1 164 ALA n 1 165 MET n 1 166 LEU n 1 167 ASN n 1 168 CYS n 1 169 LEU n 1 170 THR n 1 171 PRO n 1 172 HIS n 1 173 LEU n 1 174 HIS n 1 175 GLN n 1 176 ALA n 1 177 ALA n 1 178 ILE n 1 179 ARG n 1 180 VAL n 1 181 ALA n 1 182 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene cviR _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 31532 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Chromobacterium violaceum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 536 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code D3W065_CHRVO _struct_ref.pdbx_db_accession D3W065 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RPLPAGLTASQQWTLLEWIHMAGHIETENELKAFLDQVLSQAPSERLLLALGRLNNQNQIQRLERVLNVSYPSDWLDQYM KENYAQHDPILRIHLGQGPVMWEERFNRAKGAEEKRFIAEATQNGMGSGITFSAASERNNIGSILSIAGREPGRNAALVA MLNCLTPHLHQAAIRVAN ; _struct_ref.pdbx_align_begin 10 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3QP4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 182 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession D3W065 _struct_ref_seq.db_align_beg 10 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 187 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 10 _struct_ref_seq.pdbx_auth_seq_align_end 187 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3QP4 GLY A 1 ? UNP D3W065 ? ? 'expression tag' 6 1 1 3QP4 SER A 2 ? UNP D3W065 ? ? 'expression tag' 7 2 1 3QP4 HIS A 3 ? UNP D3W065 ? ? 'expression tag' 8 3 1 3QP4 MET A 4 ? UNP D3W065 ? ? 'expression tag' 9 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HL0 non-polymer . 'N-[(3S)-2-oxotetrahydrofuran-3-yl]decanamide' 'N-decanoyl-L-homoserine lactone' 'C14 H25 N O3' 255.353 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3QP4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_percent_sol 48.27 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.pdbx_details '100 mM Tris-Cl, 200 mM magnesium chloride, 25-35% w/v PEG3350, pH 9.0, VAPOR DIFFUSION, temperature 296K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-02-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si (111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0809 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_wavelength 1.0809 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3QP4 _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 62.472 _reflns.d_resolution_high 1.55 _reflns.number_obs 28565 _reflns.number_all 28620 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.041 _reflns.pdbx_Rsym_value 0.041 _reflns.pdbx_netI_over_sigmaI 24.987 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.55 _reflns_shell.d_res_low 1.61 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.36 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.024 _reflns_shell.pdbx_redundancy 5.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3QP4 _refine.ls_number_reflns_obs 27121 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 62.47 _refine.ls_d_res_high 1.55 _refine.ls_percent_reflns_obs 99.85 _refine.ls_R_factor_obs 0.21030 _refine.ls_R_factor_all 0.2103 _refine.ls_R_factor_R_work 0.20885 _refine.ls_R_factor_R_free 0.23797 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1444 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.939 _refine.B_iso_mean 27.787 _refine.aniso_B[1][1] 0.34 _refine.aniso_B[2][2] 0.22 _refine.aniso_B[3][3] -0.56 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 3PQ1' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.091 _refine.overall_SU_ML 0.054 _refine.overall_SU_B 3.179 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.091 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1403 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 138 _refine_hist.number_atoms_total 1559 _refine_hist.d_res_high 1.55 _refine_hist.d_res_low 62.47 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.021 ? 1449 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.217 1.957 ? 1959 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.680 5.000 ? 177 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.914 24.028 ? 72 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.827 15.000 ? 247 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.315 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.080 0.200 ? 212 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1109 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.206 0.200 ? 657 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.305 0.200 ? 993 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.148 0.200 ? 138 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.241 0.200 ? 33 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.129 0.200 ? 16 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.969 1.500 ? 909 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.526 2.000 ? 1416 'X-RAY DIFFRACTION' ? r_scbond_it 2.167 3.000 ? 604 'X-RAY DIFFRACTION' ? r_scangle_it 3.406 4.500 ? 543 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.551 _refine_ls_shell.d_res_low 1.591 _refine_ls_shell.number_reflns_R_work 1969 _refine_ls_shell.R_factor_R_work 0.251 _refine_ls_shell.percent_reflns_obs 99.38 _refine_ls_shell.R_factor_R_free 0.271 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 105 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3QP4 _struct.title 'Crystal structure of CviR ligand-binding domain bound to C10-HSL' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3QP4 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;quorum sensing, agonist, antagonist, LuxR, acylated homoserine lactone, transcription factor, DNA binding protein, ligand binding domain, N-decanoyl-L-homoserine lactone, TRANSCRIPTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 12 ? GLY A 27 ? THR A 17 GLY A 32 1 ? 16 HELX_P HELX_P2 2 THR A 31 ? SER A 44 ? THR A 36 SER A 49 1 ? 14 HELX_P HELX_P3 3 PRO A 76 ? GLU A 86 ? PRO A 81 GLU A 91 1 ? 11 HELX_P HELX_P4 4 ASN A 87 ? HIS A 91 ? ASN A 92 HIS A 96 5 ? 5 HELX_P HELX_P5 5 ASP A 92 ? ILE A 97 ? ASP A 97 ILE A 102 5 ? 6 HELX_P HELX_P6 6 TRP A 106 ? ARG A 112 ? TRP A 111 ARG A 117 1 ? 7 HELX_P HELX_P7 7 GLY A 115 ? ASN A 128 ? GLY A 120 ASN A 133 1 ? 14 HELX_P HELX_P8 8 ARG A 154 ? ASN A 159 ? ARG A 159 ASN A 164 1 ? 6 HELX_P HELX_P9 9 ASN A 159 ? ALA A 181 ? ASN A 164 ALA A 186 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 64 ? ASN A 72 ? ILE A 69 ASN A 77 A 2 LEU A 51 ? LEU A 58 ? LEU A 56 LEU A 63 A 3 ILE A 145 ? ALA A 152 ? ILE A 150 ALA A 157 A 4 GLY A 133 ? SER A 140 ? GLY A 138 SER A 145 A 5 VAL A 104 ? MET A 105 ? VAL A 109 MET A 110 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 71 ? O LEU A 76 N LEU A 53 ? N LEU A 58 A 2 3 N GLY A 56 ? N GLY A 61 O GLY A 146 ? O GLY A 151 A 3 4 O ILE A 145 ? O ILE A 150 N SER A 140 ? N SER A 145 A 4 5 O THR A 135 ? O THR A 140 N VAL A 104 ? N VAL A 109 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id HL0 _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE HL0 A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 TYR A 75 ? TYR A 80 . ? 1_555 ? 2 AC1 10 TRP A 79 ? TRP A 84 . ? 1_555 ? 3 AC1 10 TYR A 83 ? TYR A 88 . ? 1_555 ? 4 AC1 10 MET A 84 ? MET A 89 . ? 1_555 ? 5 AC1 10 ASP A 92 ? ASP A 97 . ? 1_555 ? 6 AC1 10 ILE A 94 ? ILE A 99 . ? 1_555 ? 7 AC1 10 TRP A 106 ? TRP A 111 . ? 1_555 ? 8 AC1 10 MET A 130 ? MET A 135 . ? 1_555 ? 9 AC1 10 ILE A 148 ? ILE A 153 . ? 1_555 ? 10 AC1 10 SER A 150 ? SER A 155 . ? 1_555 ? # _database_PDB_matrix.entry_id 3QP4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3QP4 _atom_sites.fract_transf_matrix[1][1] 0.018117 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017789 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008004 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 6 ? ? ? A . n A 1 2 SER 2 7 ? ? ? A . n A 1 3 HIS 3 8 ? ? ? A . n A 1 4 MET 4 9 9 MET MET A . n A 1 5 ARG 5 10 10 ARG ARG A . n A 1 6 PRO 6 11 11 PRO PRO A . n A 1 7 LEU 7 12 12 LEU LEU A . n A 1 8 PRO 8 13 13 PRO PRO A . n A 1 9 ALA 9 14 14 ALA ALA A . n A 1 10 GLY 10 15 15 GLY GLY A . n A 1 11 LEU 11 16 16 LEU LEU A . n A 1 12 THR 12 17 17 THR THR A . n A 1 13 ALA 13 18 18 ALA ALA A . n A 1 14 SER 14 19 19 SER SER A . n A 1 15 GLN 15 20 20 GLN GLN A . n A 1 16 GLN 16 21 21 GLN GLN A . n A 1 17 TRP 17 22 22 TRP TRP A . n A 1 18 THR 18 23 23 THR THR A . n A 1 19 LEU 19 24 24 LEU LEU A . n A 1 20 LEU 20 25 25 LEU LEU A . n A 1 21 GLU 21 26 26 GLU GLU A . n A 1 22 TRP 22 27 27 TRP TRP A . n A 1 23 ILE 23 28 28 ILE ILE A . n A 1 24 HIS 24 29 29 HIS HIS A . n A 1 25 MET 25 30 30 MET MET A . n A 1 26 ALA 26 31 31 ALA ALA A . n A 1 27 GLY 27 32 32 GLY GLY A . n A 1 28 HIS 28 33 33 HIS HIS A . n A 1 29 ILE 29 34 34 ILE ILE A . n A 1 30 GLU 30 35 35 GLU GLU A . n A 1 31 THR 31 36 36 THR THR A . n A 1 32 GLU 32 37 37 GLU GLU A . n A 1 33 ASN 33 38 38 ASN ASN A . n A 1 34 GLU 34 39 39 GLU GLU A . n A 1 35 LEU 35 40 40 LEU LEU A . n A 1 36 LYS 36 41 41 LYS LYS A . n A 1 37 ALA 37 42 42 ALA ALA A . n A 1 38 PHE 38 43 43 PHE PHE A . n A 1 39 LEU 39 44 44 LEU LEU A . n A 1 40 ASP 40 45 45 ASP ASP A . n A 1 41 GLN 41 46 46 GLN GLN A . n A 1 42 VAL 42 47 47 VAL VAL A . n A 1 43 LEU 43 48 48 LEU LEU A . n A 1 44 SER 44 49 49 SER SER A . n A 1 45 GLN 45 50 50 GLN GLN A . n A 1 46 ALA 46 51 51 ALA ALA A . n A 1 47 PRO 47 52 52 PRO PRO A . n A 1 48 SER 48 53 53 SER SER A . n A 1 49 GLU 49 54 54 GLU GLU A . n A 1 50 ARG 50 55 55 ARG ARG A . n A 1 51 LEU 51 56 56 LEU LEU A . n A 1 52 LEU 52 57 57 LEU LEU A . n A 1 53 LEU 53 58 58 LEU LEU A . n A 1 54 ALA 54 59 59 ALA ALA A . n A 1 55 LEU 55 60 60 LEU LEU A . n A 1 56 GLY 56 61 61 GLY GLY A . n A 1 57 ARG 57 62 62 ARG ARG A . n A 1 58 LEU 58 63 63 LEU LEU A . n A 1 59 ASN 59 64 64 ASN ASN A . n A 1 60 ASN 60 65 65 ASN ASN A . n A 1 61 GLN 61 66 66 GLN GLN A . n A 1 62 ASN 62 67 67 ASN ASN A . n A 1 63 GLN 63 68 68 GLN GLN A . n A 1 64 ILE 64 69 69 ILE ILE A . n A 1 65 GLN 65 70 70 GLN GLN A . n A 1 66 ARG 66 71 71 ARG ARG A . n A 1 67 LEU 67 72 72 LEU LEU A . n A 1 68 GLU 68 73 73 GLU GLU A . n A 1 69 ARG 69 74 74 ARG ARG A . n A 1 70 VAL 70 75 75 VAL VAL A . n A 1 71 LEU 71 76 76 LEU LEU A . n A 1 72 ASN 72 77 77 ASN ASN A . n A 1 73 VAL 73 78 78 VAL VAL A . n A 1 74 SER 74 79 79 SER SER A . n A 1 75 TYR 75 80 80 TYR TYR A . n A 1 76 PRO 76 81 81 PRO PRO A . n A 1 77 SER 77 82 82 SER SER A . n A 1 78 ASP 78 83 83 ASP ASP A . n A 1 79 TRP 79 84 84 TRP TRP A . n A 1 80 LEU 80 85 85 LEU LEU A . n A 1 81 ASP 81 86 86 ASP ASP A . n A 1 82 GLN 82 87 87 GLN GLN A . n A 1 83 TYR 83 88 88 TYR TYR A . n A 1 84 MET 84 89 89 MET MET A . n A 1 85 LYS 85 90 90 LYS LYS A . n A 1 86 GLU 86 91 91 GLU GLU A . n A 1 87 ASN 87 92 92 ASN ASN A . n A 1 88 TYR 88 93 93 TYR TYR A . n A 1 89 ALA 89 94 94 ALA ALA A . n A 1 90 GLN 90 95 95 GLN GLN A . n A 1 91 HIS 91 96 96 HIS HIS A . n A 1 92 ASP 92 97 97 ASP ASP A . n A 1 93 PRO 93 98 98 PRO PRO A . n A 1 94 ILE 94 99 99 ILE ILE A . n A 1 95 LEU 95 100 100 LEU LEU A . n A 1 96 ARG 96 101 101 ARG ARG A . n A 1 97 ILE 97 102 102 ILE ILE A . n A 1 98 HIS 98 103 103 HIS HIS A . n A 1 99 LEU 99 104 104 LEU LEU A . n A 1 100 GLY 100 105 105 GLY GLY A . n A 1 101 GLN 101 106 106 GLN GLN A . n A 1 102 GLY 102 107 107 GLY GLY A . n A 1 103 PRO 103 108 108 PRO PRO A . n A 1 104 VAL 104 109 109 VAL VAL A . n A 1 105 MET 105 110 110 MET MET A . n A 1 106 TRP 106 111 111 TRP TRP A . n A 1 107 GLU 107 112 112 GLU GLU A . n A 1 108 GLU 108 113 113 GLU GLU A . n A 1 109 ARG 109 114 114 ARG ARG A . n A 1 110 PHE 110 115 115 PHE PHE A . n A 1 111 ASN 111 116 116 ASN ASN A . n A 1 112 ARG 112 117 117 ARG ARG A . n A 1 113 ALA 113 118 118 ALA ALA A . n A 1 114 LYS 114 119 119 LYS LYS A . n A 1 115 GLY 115 120 120 GLY GLY A . n A 1 116 ALA 116 121 121 ALA ALA A . n A 1 117 GLU 117 122 122 GLU GLU A . n A 1 118 GLU 118 123 123 GLU GLU A . n A 1 119 LYS 119 124 124 LYS LYS A . n A 1 120 ARG 120 125 125 ARG ARG A . n A 1 121 PHE 121 126 126 PHE PHE A . n A 1 122 ILE 122 127 127 ILE ILE A . n A 1 123 ALA 123 128 128 ALA ALA A . n A 1 124 GLU 124 129 129 GLU GLU A . n A 1 125 ALA 125 130 130 ALA ALA A . n A 1 126 THR 126 131 131 THR THR A . n A 1 127 GLN 127 132 132 GLN GLN A . n A 1 128 ASN 128 133 133 ASN ASN A . n A 1 129 GLY 129 134 134 GLY GLY A . n A 1 130 MET 130 135 135 MET MET A . n A 1 131 GLY 131 136 136 GLY GLY A . n A 1 132 SER 132 137 137 SER SER A . n A 1 133 GLY 133 138 138 GLY GLY A . n A 1 134 ILE 134 139 139 ILE ILE A . n A 1 135 THR 135 140 140 THR THR A . n A 1 136 PHE 136 141 141 PHE PHE A . n A 1 137 SER 137 142 142 SER SER A . n A 1 138 ALA 138 143 143 ALA ALA A . n A 1 139 ALA 139 144 144 ALA ALA A . n A 1 140 SER 140 145 145 SER SER A . n A 1 141 GLU 141 146 146 GLU GLU A . n A 1 142 ARG 142 147 147 ARG ARG A . n A 1 143 ASN 143 148 148 ASN ASN A . n A 1 144 ASN 144 149 149 ASN ASN A . n A 1 145 ILE 145 150 150 ILE ILE A . n A 1 146 GLY 146 151 151 GLY GLY A . n A 1 147 SER 147 152 152 SER SER A . n A 1 148 ILE 148 153 153 ILE ILE A . n A 1 149 LEU 149 154 154 LEU LEU A . n A 1 150 SER 150 155 155 SER SER A . n A 1 151 ILE 151 156 156 ILE ILE A . n A 1 152 ALA 152 157 157 ALA ALA A . n A 1 153 GLY 153 158 158 GLY GLY A . n A 1 154 ARG 154 159 159 ARG ARG A . n A 1 155 GLU 155 160 160 GLU GLU A . n A 1 156 PRO 156 161 161 PRO PRO A . n A 1 157 GLY 157 162 162 GLY GLY A . n A 1 158 ARG 158 163 163 ARG ARG A . n A 1 159 ASN 159 164 164 ASN ASN A . n A 1 160 ALA 160 165 165 ALA ALA A . n A 1 161 ALA 161 166 166 ALA ALA A . n A 1 162 LEU 162 167 167 LEU LEU A . n A 1 163 VAL 163 168 168 VAL VAL A . n A 1 164 ALA 164 169 169 ALA ALA A . n A 1 165 MET 165 170 170 MET MET A . n A 1 166 LEU 166 171 171 LEU LEU A . n A 1 167 ASN 167 172 172 ASN ASN A . n A 1 168 CYS 168 173 173 CYS CYS A . n A 1 169 LEU 169 174 174 LEU LEU A . n A 1 170 THR 170 175 175 THR THR A . n A 1 171 PRO 171 176 176 PRO PRO A . n A 1 172 HIS 172 177 177 HIS HIS A . n A 1 173 LEU 173 178 178 LEU LEU A . n A 1 174 HIS 174 179 179 HIS HIS A . n A 1 175 GLN 175 180 180 GLN GLN A . n A 1 176 ALA 176 181 181 ALA ALA A . n A 1 177 ALA 177 182 182 ALA ALA A . n A 1 178 ILE 178 183 183 ILE ILE A . n A 1 179 ARG 179 184 184 ARG ARG A . n A 1 180 VAL 180 185 185 VAL VAL A . n A 1 181 ALA 181 186 186 ALA ALA A . n A 1 182 ASN 182 187 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HL0 1 1 1 HL0 HL0 A . C 3 HOH 1 2 2 HOH HOH A . C 3 HOH 2 3 3 HOH HOH A . C 3 HOH 3 4 4 HOH HOH A . C 3 HOH 4 5 5 HOH HOH A . C 3 HOH 5 188 1 HOH HOH A . C 3 HOH 6 189 6 HOH HOH A . C 3 HOH 7 190 7 HOH HOH A . C 3 HOH 8 191 8 HOH HOH A . C 3 HOH 9 192 9 HOH HOH A . C 3 HOH 10 193 10 HOH HOH A . C 3 HOH 11 194 11 HOH HOH A . C 3 HOH 12 195 12 HOH HOH A . C 3 HOH 13 196 13 HOH HOH A . C 3 HOH 14 197 14 HOH HOH A . C 3 HOH 15 198 15 HOH HOH A . C 3 HOH 16 199 16 HOH HOH A . C 3 HOH 17 200 17 HOH HOH A . C 3 HOH 18 201 18 HOH HOH A . C 3 HOH 19 202 19 HOH HOH A . C 3 HOH 20 203 20 HOH HOH A . C 3 HOH 21 204 21 HOH HOH A . C 3 HOH 22 205 22 HOH HOH A . C 3 HOH 23 206 23 HOH HOH A . C 3 HOH 24 207 24 HOH HOH A . C 3 HOH 25 208 25 HOH HOH A . C 3 HOH 26 209 26 HOH HOH A . C 3 HOH 27 210 27 HOH HOH A . C 3 HOH 28 211 28 HOH HOH A . C 3 HOH 29 212 29 HOH HOH A . C 3 HOH 30 213 30 HOH HOH A . C 3 HOH 31 214 31 HOH HOH A . C 3 HOH 32 215 32 HOH HOH A . C 3 HOH 33 216 33 HOH HOH A . C 3 HOH 34 217 34 HOH HOH A . C 3 HOH 35 218 35 HOH HOH A . C 3 HOH 36 219 36 HOH HOH A . C 3 HOH 37 220 37 HOH HOH A . C 3 HOH 38 221 38 HOH HOH A . C 3 HOH 39 222 39 HOH HOH A . C 3 HOH 40 223 40 HOH HOH A . C 3 HOH 41 224 41 HOH HOH A . C 3 HOH 42 225 42 HOH HOH A . C 3 HOH 43 226 43 HOH HOH A . C 3 HOH 44 227 44 HOH HOH A . C 3 HOH 45 228 45 HOH HOH A . C 3 HOH 46 229 46 HOH HOH A . C 3 HOH 47 230 47 HOH HOH A . C 3 HOH 48 231 48 HOH HOH A . C 3 HOH 49 232 49 HOH HOH A . C 3 HOH 50 233 50 HOH HOH A . C 3 HOH 51 234 51 HOH HOH A . C 3 HOH 52 235 52 HOH HOH A . C 3 HOH 53 236 53 HOH HOH A . C 3 HOH 54 237 54 HOH HOH A . C 3 HOH 55 238 55 HOH HOH A . C 3 HOH 56 239 56 HOH HOH A . C 3 HOH 57 240 57 HOH HOH A . C 3 HOH 58 241 58 HOH HOH A . C 3 HOH 59 242 59 HOH HOH A . C 3 HOH 60 243 60 HOH HOH A . C 3 HOH 61 244 61 HOH HOH A . C 3 HOH 62 245 62 HOH HOH A . C 3 HOH 63 246 63 HOH HOH A . C 3 HOH 64 247 64 HOH HOH A . C 3 HOH 65 248 65 HOH HOH A . C 3 HOH 66 249 66 HOH HOH A . C 3 HOH 67 250 67 HOH HOH A . C 3 HOH 68 251 68 HOH HOH A . C 3 HOH 69 252 69 HOH HOH A . C 3 HOH 70 253 70 HOH HOH A . C 3 HOH 71 254 71 HOH HOH A . C 3 HOH 72 255 72 HOH HOH A . C 3 HOH 73 256 73 HOH HOH A . C 3 HOH 74 257 74 HOH HOH A . C 3 HOH 75 258 75 HOH HOH A . C 3 HOH 76 259 76 HOH HOH A . C 3 HOH 77 260 77 HOH HOH A . C 3 HOH 78 261 78 HOH HOH A . C 3 HOH 79 262 79 HOH HOH A . C 3 HOH 80 263 80 HOH HOH A . C 3 HOH 81 264 81 HOH HOH A . C 3 HOH 82 265 82 HOH HOH A . C 3 HOH 83 266 83 HOH HOH A . C 3 HOH 84 267 84 HOH HOH A . C 3 HOH 85 268 85 HOH HOH A . C 3 HOH 86 269 86 HOH HOH A . C 3 HOH 87 270 87 HOH HOH A . C 3 HOH 88 271 88 HOH HOH A . C 3 HOH 89 272 89 HOH HOH A . C 3 HOH 90 273 90 HOH HOH A . C 3 HOH 91 274 91 HOH HOH A . C 3 HOH 92 275 92 HOH HOH A . C 3 HOH 93 276 93 HOH HOH A . C 3 HOH 94 277 94 HOH HOH A . C 3 HOH 95 278 95 HOH HOH A . C 3 HOH 96 279 96 HOH HOH A . C 3 HOH 97 280 97 HOH HOH A . C 3 HOH 98 281 98 HOH HOH A . C 3 HOH 99 282 99 HOH HOH A . C 3 HOH 100 283 100 HOH HOH A . C 3 HOH 101 284 101 HOH HOH A . C 3 HOH 102 285 102 HOH HOH A . C 3 HOH 103 286 103 HOH HOH A . C 3 HOH 104 287 104 HOH HOH A . C 3 HOH 105 288 105 HOH HOH A . C 3 HOH 106 289 106 HOH HOH A . C 3 HOH 107 290 107 HOH HOH A . C 3 HOH 108 291 108 HOH HOH A . C 3 HOH 109 292 109 HOH HOH A . C 3 HOH 110 293 110 HOH HOH A . C 3 HOH 111 294 111 HOH HOH A . C 3 HOH 112 295 112 HOH HOH A . C 3 HOH 113 296 113 HOH HOH A . C 3 HOH 114 297 114 HOH HOH A . C 3 HOH 115 298 115 HOH HOH A . C 3 HOH 116 299 116 HOH HOH A . C 3 HOH 117 300 117 HOH HOH A . C 3 HOH 118 301 118 HOH HOH A . C 3 HOH 119 302 119 HOH HOH A . C 3 HOH 120 303 120 HOH HOH A . C 3 HOH 121 304 121 HOH HOH A . C 3 HOH 122 305 122 HOH HOH A . C 3 HOH 123 306 123 HOH HOH A . C 3 HOH 124 307 124 HOH HOH A . C 3 HOH 125 308 125 HOH HOH A . C 3 HOH 126 309 126 HOH HOH A . C 3 HOH 127 310 127 HOH HOH A . C 3 HOH 128 311 128 HOH HOH A . C 3 HOH 129 312 129 HOH HOH A . C 3 HOH 130 313 130 HOH HOH A . C 3 HOH 131 314 131 HOH HOH A . C 3 HOH 132 315 132 HOH HOH A . C 3 HOH 133 316 133 HOH HOH A . C 3 HOH 134 317 134 HOH HOH A . C 3 HOH 135 318 135 HOH HOH A . C 3 HOH 136 319 136 HOH HOH A . C 3 HOH 137 320 137 HOH HOH A . C 3 HOH 138 321 138 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2220 ? 1 MORE -16 ? 1 'SSA (A^2)' 16670 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 56.2160000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 191 ? C HOH . 2 1 A HOH 194 ? C HOH . 3 1 A HOH 195 ? C HOH . 4 1 A HOH 199 ? C HOH . 5 1 A HOH 281 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-03-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_special_symmetry 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 14.9106 _pdbx_refine_tls.origin_y 18.0108 _pdbx_refine_tls.origin_z 45.6062 _pdbx_refine_tls.T[1][1] -0.0057 _pdbx_refine_tls.T[2][2] -0.0183 _pdbx_refine_tls.T[3][3] -0.0222 _pdbx_refine_tls.T[1][2] 0.0366 _pdbx_refine_tls.T[1][3] 0.0028 _pdbx_refine_tls.T[2][3] -0.0174 _pdbx_refine_tls.L[1][1] 0.8553 _pdbx_refine_tls.L[2][2] 0.5636 _pdbx_refine_tls.L[3][3] 0.6062 _pdbx_refine_tls.L[1][2] -0.6758 _pdbx_refine_tls.L[1][3] 0.2734 _pdbx_refine_tls.L[2][3] -0.3170 _pdbx_refine_tls.S[1][1] 0.0723 _pdbx_refine_tls.S[1][2] -0.0225 _pdbx_refine_tls.S[1][3] 0.0217 _pdbx_refine_tls.S[2][1] -0.0930 _pdbx_refine_tls.S[2][2] -0.0281 _pdbx_refine_tls.S[2][3] 0.0249 _pdbx_refine_tls.S[3][1] 0.1278 _pdbx_refine_tls.S[3][2] 0.0780 _pdbx_refine_tls.S[3][3] -0.0442 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 9 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 186 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 79 ? ? -156.09 19.76 2 1 ASN A 148 ? ? -143.99 47.16 3 1 ASN A 149 ? ? 39.17 61.42 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 6 ? A GLY 1 2 1 Y 1 A SER 7 ? A SER 2 3 1 Y 1 A HIS 8 ? A HIS 3 4 1 Y 1 A ASN 187 ? A ASN 182 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HL0 N N N N 158 HL0 C1 C N N 159 HL0 O1 O N N 160 HL0 C2 C N N 161 HL0 O2 O N N 162 HL0 C3 C N N 163 HL0 O3 O N N 164 HL0 C4 C N N 165 HL0 C5 C N N 166 HL0 C6 C N N 167 HL0 C7 C N N 168 HL0 C8 C N N 169 HL0 C9 C N N 170 HL0 C10 C N N 171 HL0 C11 C N S 172 HL0 C12 C N N 173 HL0 C13 C N N 174 HL0 C14 C N N 175 HL0 HN H N N 176 HL0 H1 H N N 177 HL0 H1A H N N 178 HL0 H1B H N N 179 HL0 H2 H N N 180 HL0 H2A H N N 181 HL0 H3 H N N 182 HL0 H3A H N N 183 HL0 H4 H N N 184 HL0 H4A H N N 185 HL0 H5 H N N 186 HL0 H5A H N N 187 HL0 H6 H N N 188 HL0 H6A H N N 189 HL0 H7 H N N 190 HL0 H7A H N N 191 HL0 H8 H N N 192 HL0 H8A H N N 193 HL0 H9 H N N 194 HL0 H9A H N N 195 HL0 H11 H N N 196 HL0 H12 H N N 197 HL0 H12A H N N 198 HL0 H13 H N N 199 HL0 H13A H N N 200 HOH O O N N 201 HOH H1 H N N 202 HOH H2 H N N 203 ILE N N N N 204 ILE CA C N S 205 ILE C C N N 206 ILE O O N N 207 ILE CB C N S 208 ILE CG1 C N N 209 ILE CG2 C N N 210 ILE CD1 C N N 211 ILE OXT O N N 212 ILE H H N N 213 ILE H2 H N N 214 ILE HA H N N 215 ILE HB H N N 216 ILE HG12 H N N 217 ILE HG13 H N N 218 ILE HG21 H N N 219 ILE HG22 H N N 220 ILE HG23 H N N 221 ILE HD11 H N N 222 ILE HD12 H N N 223 ILE HD13 H N N 224 ILE HXT H N N 225 LEU N N N N 226 LEU CA C N S 227 LEU C C N N 228 LEU O O N N 229 LEU CB C N N 230 LEU CG C N N 231 LEU CD1 C N N 232 LEU CD2 C N N 233 LEU OXT O N N 234 LEU H H N N 235 LEU H2 H N N 236 LEU HA H N N 237 LEU HB2 H N N 238 LEU HB3 H N N 239 LEU HG H N N 240 LEU HD11 H N N 241 LEU HD12 H N N 242 LEU HD13 H N N 243 LEU HD21 H N N 244 LEU HD22 H N N 245 LEU HD23 H N N 246 LEU HXT H N N 247 LYS N N N N 248 LYS CA C N S 249 LYS C C N N 250 LYS O O N N 251 LYS CB C N N 252 LYS CG C N N 253 LYS CD C N N 254 LYS CE C N N 255 LYS NZ N N N 256 LYS OXT O N N 257 LYS H H N N 258 LYS H2 H N N 259 LYS HA H N N 260 LYS HB2 H N N 261 LYS HB3 H N N 262 LYS HG2 H N N 263 LYS HG3 H N N 264 LYS HD2 H N N 265 LYS HD3 H N N 266 LYS HE2 H N N 267 LYS HE3 H N N 268 LYS HZ1 H N N 269 LYS HZ2 H N N 270 LYS HZ3 H N N 271 LYS HXT H N N 272 MET N N N N 273 MET CA C N S 274 MET C C N N 275 MET O O N N 276 MET CB C N N 277 MET CG C N N 278 MET SD S N N 279 MET CE C N N 280 MET OXT O N N 281 MET H H N N 282 MET H2 H N N 283 MET HA H N N 284 MET HB2 H N N 285 MET HB3 H N N 286 MET HG2 H N N 287 MET HG3 H N N 288 MET HE1 H N N 289 MET HE2 H N N 290 MET HE3 H N N 291 MET HXT H N N 292 PHE N N N N 293 PHE CA C N S 294 PHE C C N N 295 PHE O O N N 296 PHE CB C N N 297 PHE CG C Y N 298 PHE CD1 C Y N 299 PHE CD2 C Y N 300 PHE CE1 C Y N 301 PHE CE2 C Y N 302 PHE CZ C Y N 303 PHE OXT O N N 304 PHE H H N N 305 PHE H2 H N N 306 PHE HA H N N 307 PHE HB2 H N N 308 PHE HB3 H N N 309 PHE HD1 H N N 310 PHE HD2 H N N 311 PHE HE1 H N N 312 PHE HE2 H N N 313 PHE HZ H N N 314 PHE HXT H N N 315 PRO N N N N 316 PRO CA C N S 317 PRO C C N N 318 PRO O O N N 319 PRO CB C N N 320 PRO CG C N N 321 PRO CD C N N 322 PRO OXT O N N 323 PRO H H N N 324 PRO HA H N N 325 PRO HB2 H N N 326 PRO HB3 H N N 327 PRO HG2 H N N 328 PRO HG3 H N N 329 PRO HD2 H N N 330 PRO HD3 H N N 331 PRO HXT H N N 332 SER N N N N 333 SER CA C N S 334 SER C C N N 335 SER O O N N 336 SER CB C N N 337 SER OG O N N 338 SER OXT O N N 339 SER H H N N 340 SER H2 H N N 341 SER HA H N N 342 SER HB2 H N N 343 SER HB3 H N N 344 SER HG H N N 345 SER HXT H N N 346 THR N N N N 347 THR CA C N S 348 THR C C N N 349 THR O O N N 350 THR CB C N R 351 THR OG1 O N N 352 THR CG2 C N N 353 THR OXT O N N 354 THR H H N N 355 THR H2 H N N 356 THR HA H N N 357 THR HB H N N 358 THR HG1 H N N 359 THR HG21 H N N 360 THR HG22 H N N 361 THR HG23 H N N 362 THR HXT H N N 363 TRP N N N N 364 TRP CA C N S 365 TRP C C N N 366 TRP O O N N 367 TRP CB C N N 368 TRP CG C Y N 369 TRP CD1 C Y N 370 TRP CD2 C Y N 371 TRP NE1 N Y N 372 TRP CE2 C Y N 373 TRP CE3 C Y N 374 TRP CZ2 C Y N 375 TRP CZ3 C Y N 376 TRP CH2 C Y N 377 TRP OXT O N N 378 TRP H H N N 379 TRP H2 H N N 380 TRP HA H N N 381 TRP HB2 H N N 382 TRP HB3 H N N 383 TRP HD1 H N N 384 TRP HE1 H N N 385 TRP HE3 H N N 386 TRP HZ2 H N N 387 TRP HZ3 H N N 388 TRP HH2 H N N 389 TRP HXT H N N 390 TYR N N N N 391 TYR CA C N S 392 TYR C C N N 393 TYR O O N N 394 TYR CB C N N 395 TYR CG C Y N 396 TYR CD1 C Y N 397 TYR CD2 C Y N 398 TYR CE1 C Y N 399 TYR CE2 C Y N 400 TYR CZ C Y N 401 TYR OH O N N 402 TYR OXT O N N 403 TYR H H N N 404 TYR H2 H N N 405 TYR HA H N N 406 TYR HB2 H N N 407 TYR HB3 H N N 408 TYR HD1 H N N 409 TYR HD2 H N N 410 TYR HE1 H N N 411 TYR HE2 H N N 412 TYR HH H N N 413 TYR HXT H N N 414 VAL N N N N 415 VAL CA C N S 416 VAL C C N N 417 VAL O O N N 418 VAL CB C N N 419 VAL CG1 C N N 420 VAL CG2 C N N 421 VAL OXT O N N 422 VAL H H N N 423 VAL H2 H N N 424 VAL HA H N N 425 VAL HB H N N 426 VAL HG11 H N N 427 VAL HG12 H N N 428 VAL HG13 H N N 429 VAL HG21 H N N 430 VAL HG22 H N N 431 VAL HG23 H N N 432 VAL HXT H N N 433 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HL0 N C10 sing N N 150 HL0 N C11 sing N N 151 HL0 C1 C2 sing N N 152 HL0 O1 C10 doub N N 153 HL0 C2 C3 sing N N 154 HL0 O2 C13 sing N N 155 HL0 O2 C14 sing N N 156 HL0 C3 C4 sing N N 157 HL0 O3 C14 doub N N 158 HL0 C4 C5 sing N N 159 HL0 C5 C6 sing N N 160 HL0 C6 C7 sing N N 161 HL0 C7 C8 sing N N 162 HL0 C8 C9 sing N N 163 HL0 C9 C10 sing N N 164 HL0 C11 C12 sing N N 165 HL0 C11 C14 sing N N 166 HL0 C12 C13 sing N N 167 HL0 N HN sing N N 168 HL0 C1 H1 sing N N 169 HL0 C1 H1A sing N N 170 HL0 C1 H1B sing N N 171 HL0 C2 H2 sing N N 172 HL0 C2 H2A sing N N 173 HL0 C3 H3 sing N N 174 HL0 C3 H3A sing N N 175 HL0 C4 H4 sing N N 176 HL0 C4 H4A sing N N 177 HL0 C5 H5 sing N N 178 HL0 C5 H5A sing N N 179 HL0 C6 H6 sing N N 180 HL0 C6 H6A sing N N 181 HL0 C7 H7 sing N N 182 HL0 C7 H7A sing N N 183 HL0 C8 H8 sing N N 184 HL0 C8 H8A sing N N 185 HL0 C9 H9 sing N N 186 HL0 C9 H9A sing N N 187 HL0 C11 H11 sing N N 188 HL0 C12 H12 sing N N 189 HL0 C12 H12A sing N N 190 HL0 C13 H13 sing N N 191 HL0 C13 H13A sing N N 192 HOH O H1 sing N N 193 HOH O H2 sing N N 194 ILE N CA sing N N 195 ILE N H sing N N 196 ILE N H2 sing N N 197 ILE CA C sing N N 198 ILE CA CB sing N N 199 ILE CA HA sing N N 200 ILE C O doub N N 201 ILE C OXT sing N N 202 ILE CB CG1 sing N N 203 ILE CB CG2 sing N N 204 ILE CB HB sing N N 205 ILE CG1 CD1 sing N N 206 ILE CG1 HG12 sing N N 207 ILE CG1 HG13 sing N N 208 ILE CG2 HG21 sing N N 209 ILE CG2 HG22 sing N N 210 ILE CG2 HG23 sing N N 211 ILE CD1 HD11 sing N N 212 ILE CD1 HD12 sing N N 213 ILE CD1 HD13 sing N N 214 ILE OXT HXT sing N N 215 LEU N CA sing N N 216 LEU N H sing N N 217 LEU N H2 sing N N 218 LEU CA C sing N N 219 LEU CA CB sing N N 220 LEU CA HA sing N N 221 LEU C O doub N N 222 LEU C OXT sing N N 223 LEU CB CG sing N N 224 LEU CB HB2 sing N N 225 LEU CB HB3 sing N N 226 LEU CG CD1 sing N N 227 LEU CG CD2 sing N N 228 LEU CG HG sing N N 229 LEU CD1 HD11 sing N N 230 LEU CD1 HD12 sing N N 231 LEU CD1 HD13 sing N N 232 LEU CD2 HD21 sing N N 233 LEU CD2 HD22 sing N N 234 LEU CD2 HD23 sing N N 235 LEU OXT HXT sing N N 236 LYS N CA sing N N 237 LYS N H sing N N 238 LYS N H2 sing N N 239 LYS CA C sing N N 240 LYS CA CB sing N N 241 LYS CA HA sing N N 242 LYS C O doub N N 243 LYS C OXT sing N N 244 LYS CB CG sing N N 245 LYS CB HB2 sing N N 246 LYS CB HB3 sing N N 247 LYS CG CD sing N N 248 LYS CG HG2 sing N N 249 LYS CG HG3 sing N N 250 LYS CD CE sing N N 251 LYS CD HD2 sing N N 252 LYS CD HD3 sing N N 253 LYS CE NZ sing N N 254 LYS CE HE2 sing N N 255 LYS CE HE3 sing N N 256 LYS NZ HZ1 sing N N 257 LYS NZ HZ2 sing N N 258 LYS NZ HZ3 sing N N 259 LYS OXT HXT sing N N 260 MET N CA sing N N 261 MET N H sing N N 262 MET N H2 sing N N 263 MET CA C sing N N 264 MET CA CB sing N N 265 MET CA HA sing N N 266 MET C O doub N N 267 MET C OXT sing N N 268 MET CB CG sing N N 269 MET CB HB2 sing N N 270 MET CB HB3 sing N N 271 MET CG SD sing N N 272 MET CG HG2 sing N N 273 MET CG HG3 sing N N 274 MET SD CE sing N N 275 MET CE HE1 sing N N 276 MET CE HE2 sing N N 277 MET CE HE3 sing N N 278 MET OXT HXT sing N N 279 PHE N CA sing N N 280 PHE N H sing N N 281 PHE N H2 sing N N 282 PHE CA C sing N N 283 PHE CA CB sing N N 284 PHE CA HA sing N N 285 PHE C O doub N N 286 PHE C OXT sing N N 287 PHE CB CG sing N N 288 PHE CB HB2 sing N N 289 PHE CB HB3 sing N N 290 PHE CG CD1 doub Y N 291 PHE CG CD2 sing Y N 292 PHE CD1 CE1 sing Y N 293 PHE CD1 HD1 sing N N 294 PHE CD2 CE2 doub Y N 295 PHE CD2 HD2 sing N N 296 PHE CE1 CZ doub Y N 297 PHE CE1 HE1 sing N N 298 PHE CE2 CZ sing Y N 299 PHE CE2 HE2 sing N N 300 PHE CZ HZ sing N N 301 PHE OXT HXT sing N N 302 PRO N CA sing N N 303 PRO N CD sing N N 304 PRO N H sing N N 305 PRO CA C sing N N 306 PRO CA CB sing N N 307 PRO CA HA sing N N 308 PRO C O doub N N 309 PRO C OXT sing N N 310 PRO CB CG sing N N 311 PRO CB HB2 sing N N 312 PRO CB HB3 sing N N 313 PRO CG CD sing N N 314 PRO CG HG2 sing N N 315 PRO CG HG3 sing N N 316 PRO CD HD2 sing N N 317 PRO CD HD3 sing N N 318 PRO OXT HXT sing N N 319 SER N CA sing N N 320 SER N H sing N N 321 SER N H2 sing N N 322 SER CA C sing N N 323 SER CA CB sing N N 324 SER CA HA sing N N 325 SER C O doub N N 326 SER C OXT sing N N 327 SER CB OG sing N N 328 SER CB HB2 sing N N 329 SER CB HB3 sing N N 330 SER OG HG sing N N 331 SER OXT HXT sing N N 332 THR N CA sing N N 333 THR N H sing N N 334 THR N H2 sing N N 335 THR CA C sing N N 336 THR CA CB sing N N 337 THR CA HA sing N N 338 THR C O doub N N 339 THR C OXT sing N N 340 THR CB OG1 sing N N 341 THR CB CG2 sing N N 342 THR CB HB sing N N 343 THR OG1 HG1 sing N N 344 THR CG2 HG21 sing N N 345 THR CG2 HG22 sing N N 346 THR CG2 HG23 sing N N 347 THR OXT HXT sing N N 348 TRP N CA sing N N 349 TRP N H sing N N 350 TRP N H2 sing N N 351 TRP CA C sing N N 352 TRP CA CB sing N N 353 TRP CA HA sing N N 354 TRP C O doub N N 355 TRP C OXT sing N N 356 TRP CB CG sing N N 357 TRP CB HB2 sing N N 358 TRP CB HB3 sing N N 359 TRP CG CD1 doub Y N 360 TRP CG CD2 sing Y N 361 TRP CD1 NE1 sing Y N 362 TRP CD1 HD1 sing N N 363 TRP CD2 CE2 doub Y N 364 TRP CD2 CE3 sing Y N 365 TRP NE1 CE2 sing Y N 366 TRP NE1 HE1 sing N N 367 TRP CE2 CZ2 sing Y N 368 TRP CE3 CZ3 doub Y N 369 TRP CE3 HE3 sing N N 370 TRP CZ2 CH2 doub Y N 371 TRP CZ2 HZ2 sing N N 372 TRP CZ3 CH2 sing Y N 373 TRP CZ3 HZ3 sing N N 374 TRP CH2 HH2 sing N N 375 TRP OXT HXT sing N N 376 TYR N CA sing N N 377 TYR N H sing N N 378 TYR N H2 sing N N 379 TYR CA C sing N N 380 TYR CA CB sing N N 381 TYR CA HA sing N N 382 TYR C O doub N N 383 TYR C OXT sing N N 384 TYR CB CG sing N N 385 TYR CB HB2 sing N N 386 TYR CB HB3 sing N N 387 TYR CG CD1 doub Y N 388 TYR CG CD2 sing Y N 389 TYR CD1 CE1 sing Y N 390 TYR CD1 HD1 sing N N 391 TYR CD2 CE2 doub Y N 392 TYR CD2 HD2 sing N N 393 TYR CE1 CZ doub Y N 394 TYR CE1 HE1 sing N N 395 TYR CE2 CZ sing Y N 396 TYR CE2 HE2 sing N N 397 TYR CZ OH sing N N 398 TYR OH HH sing N N 399 TYR OXT HXT sing N N 400 VAL N CA sing N N 401 VAL N H sing N N 402 VAL N H2 sing N N 403 VAL CA C sing N N 404 VAL CA CB sing N N 405 VAL CA HA sing N N 406 VAL C O doub N N 407 VAL C OXT sing N N 408 VAL CB CG1 sing N N 409 VAL CB CG2 sing N N 410 VAL CB HB sing N N 411 VAL CG1 HG11 sing N N 412 VAL CG1 HG12 sing N N 413 VAL CG1 HG13 sing N N 414 VAL CG2 HG21 sing N N 415 VAL CG2 HG22 sing N N 416 VAL CG2 HG23 sing N N 417 VAL OXT HXT sing N N 418 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'N-[(3S)-2-oxotetrahydrofuran-3-yl]decanamide' HL0 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3PQ1 _pdbx_initial_refinement_model.details 'PDB ENTRY 3PQ1' #